Multiple sequence alignment - TraesCS3B01G083400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G083400 chr3B 100.000 9796 0 0 1 9796 52735870 52726075 0.000000e+00 18090.0
1 TraesCS3B01G083400 chr3B 97.143 35 1 0 9173 9207 52726665 52726631 1.060000e-04 60.2
2 TraesCS3B01G083400 chr3B 97.143 35 1 0 9206 9240 52726698 52726664 1.060000e-04 60.2
3 TraesCS3B01G083400 chr3D 93.922 9032 356 98 167 9143 30292450 30301343 0.000000e+00 13459.0
4 TraesCS3B01G083400 chr3D 95.679 162 7 0 1 162 30290719 30290880 2.710000e-65 261.0
5 TraesCS3B01G083400 chr3D 92.216 167 13 0 9624 9790 30301761 30301927 4.570000e-58 237.0
6 TraesCS3B01G083400 chr3A 94.047 8567 331 64 642 9143 42023966 42032418 0.000000e+00 12829.0
7 TraesCS3B01G083400 chr3A 83.857 223 25 8 9369 9589 42032491 42032704 1.670000e-47 202.0
8 TraesCS3B01G083400 chr3A 93.069 101 6 1 9690 9790 42034650 42034749 7.930000e-31 147.0
9 TraesCS3B01G083400 chr5B 94.986 718 30 6 1656 2370 517614319 517615033 0.000000e+00 1122.0
10 TraesCS3B01G083400 chr4B 96.078 459 14 4 1914 2370 523376788 523377244 0.000000e+00 745.0
11 TraesCS3B01G083400 chr1B 97.037 405 9 3 1967 2370 36984439 36984037 0.000000e+00 678.0
12 TraesCS3B01G083400 chr1B 96.814 408 9 4 1964 2370 292483541 292483945 0.000000e+00 678.0
13 TraesCS3B01G083400 chr1B 77.053 889 161 33 5565 6436 139665139 139666001 1.150000e-128 472.0
14 TraesCS3B01G083400 chr1B 78.308 733 130 24 3901 4623 139663381 139664094 6.980000e-121 446.0
15 TraesCS3B01G083400 chr1B 79.399 466 82 11 4959 5415 139664465 139664925 5.710000e-82 316.0
16 TraesCS3B01G083400 chr6B 96.577 409 10 3 1964 2370 719961334 719961740 0.000000e+00 675.0
17 TraesCS3B01G083400 chr2B 96.543 405 12 2 1967 2371 73347506 73347104 0.000000e+00 669.0
18 TraesCS3B01G083400 chrUn 96.543 405 10 4 1967 2370 461007718 461007317 0.000000e+00 667.0
19 TraesCS3B01G083400 chr1D 77.314 886 147 41 5565 6436 86920545 86921390 3.200000e-129 473.0
20 TraesCS3B01G083400 chr1D 77.520 734 134 21 3901 4623 86918793 86919506 7.080000e-111 412.0
21 TraesCS3B01G083400 chr1D 80.215 465 78 12 4959 5415 86919878 86920336 4.380000e-88 337.0
22 TraesCS3B01G083400 chr1A 78.095 735 128 24 3901 4623 82521997 82522710 1.510000e-117 435.0
23 TraesCS3B01G083400 chr1A 79.657 467 79 13 4959 5415 82523082 82523542 1.230000e-83 322.0
24 TraesCS3B01G083400 chr7A 98.958 192 1 1 6255 6445 254257417 254257226 9.420000e-90 342.0
25 TraesCS3B01G083400 chr2A 93.548 62 3 1 3014 3075 765872010 765872070 3.770000e-14 91.6
26 TraesCS3B01G083400 chr2A 93.443 61 3 1 3016 3076 765872009 765871950 1.360000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G083400 chr3B 52726075 52735870 9795 True 18090.000000 18090 100.000000 1 9796 1 chr3B.!!$R1 9795
1 TraesCS3B01G083400 chr3D 30290719 30301927 11208 False 4652.333333 13459 93.939000 1 9790 3 chr3D.!!$F1 9789
2 TraesCS3B01G083400 chr3A 42023966 42034749 10783 False 4392.666667 12829 90.324333 642 9790 3 chr3A.!!$F1 9148
3 TraesCS3B01G083400 chr5B 517614319 517615033 714 False 1122.000000 1122 94.986000 1656 2370 1 chr5B.!!$F1 714
4 TraesCS3B01G083400 chr1B 139663381 139666001 2620 False 411.333333 472 78.253333 3901 6436 3 chr1B.!!$F2 2535
5 TraesCS3B01G083400 chr1D 86918793 86921390 2597 False 407.333333 473 78.349667 3901 6436 3 chr1D.!!$F1 2535
6 TraesCS3B01G083400 chr1A 82521997 82523542 1545 False 378.500000 435 78.876000 3901 5415 2 chr1A.!!$F1 1514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 1745 0.399091 CCCAGGCTCAGACATAGGGA 60.399 60.000 0.00 0.00 36.96 4.20 F
975 2558 0.543749 CTCCAGCCCAGAAACCCTAG 59.456 60.000 0.00 0.00 0.00 3.02 F
1482 3082 0.532417 ATAGCAGCAGCAGCAGTAGC 60.532 55.000 12.92 1.77 45.49 3.58 F
2785 4407 0.036164 TGTATGCTGGGTTGCGAGTT 59.964 50.000 0.00 0.00 35.36 3.01 F
2789 4411 0.107831 TGCTGGGTTGCGAGTTTAGT 59.892 50.000 0.00 0.00 35.36 2.24 F
2893 4515 0.399806 GGAGGGCAGAAGAGGAGGAT 60.400 60.000 0.00 0.00 0.00 3.24 F
3430 5054 2.551459 GGCTGTGCATCCATATGAGAAC 59.449 50.000 3.65 0.00 34.84 3.01 F
5137 6803 1.156736 CTGGTGGTGAGCGTAAAAGG 58.843 55.000 0.00 0.00 0.00 3.11 F
5907 7747 1.663135 GATCTTCAAGCTCAAGACCGC 59.337 52.381 9.66 1.29 32.65 5.68 F
6615 8496 2.213499 CCAACTGACTCTGCTTTTCGT 58.787 47.619 0.00 0.00 0.00 3.85 F
8132 10014 1.076332 CACCCTTGTTCCGATTCGAC 58.924 55.000 7.83 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1045 2631 0.185175 GACTCCTCCTCCTCCTCCTC 59.815 65.000 0.00 0.0 0.00 3.71 R
2771 4393 0.796927 GACTAAACTCGCAACCCAGC 59.203 55.000 0.00 0.0 0.00 4.85 R
2866 4488 1.905215 TCTTCTGCCCTCCTCTTTGAG 59.095 52.381 0.00 0.0 0.00 3.02 R
3777 5401 1.002430 CAAGAACAGGGTCAGCTAGCA 59.998 52.381 18.83 0.0 0.00 3.49 R
4666 6296 1.330234 TCAGTGGTTGCAATGCATGT 58.670 45.000 9.39 0.0 38.76 3.21 R
4762 6397 3.577649 TTGAGTAGAGACCAAAGCTCG 57.422 47.619 0.00 0.0 37.46 5.03 R
5152 6818 2.415168 GCAGCACTTTCGTAACTGCATA 59.585 45.455 8.32 0.0 45.09 3.14 R
6593 8474 3.181469 ACGAAAAGCAGAGTCAGTTGGTA 60.181 43.478 0.00 0.0 0.00 3.25 R
7713 9595 2.136298 TCACCCAAGCAAAACAGTCA 57.864 45.000 0.00 0.0 0.00 3.41 R
8147 10029 0.251077 CCAGCTCTTGGGCACTTCTT 60.251 55.000 0.00 0.0 43.75 2.52 R
9695 11667 0.302288 TTCAACCGCGAAGAACAACG 59.698 50.000 8.23 0.0 0.00 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 1.568025 GACAACTTCGACGCCCAAC 59.432 57.895 0.00 0.00 0.00 3.77
162 163 3.885521 CGACCGAGACCGCTACCC 61.886 72.222 0.00 0.00 0.00 3.69
165 166 3.528370 CCGAGACCGCTACCCAGG 61.528 72.222 0.00 0.00 0.00 4.45
171 1737 2.759973 CCGCTACCCAGGCTCAGA 60.760 66.667 0.00 0.00 0.00 3.27
179 1745 0.399091 CCCAGGCTCAGACATAGGGA 60.399 60.000 0.00 0.00 36.96 4.20
192 1758 0.980754 ATAGGGATGTGTGGACGCCA 60.981 55.000 0.00 0.00 0.00 5.69
212 1778 0.843984 CATAGGACCCCCGGATTTGT 59.156 55.000 0.73 0.00 37.58 2.83
301 1867 3.272334 CGCAAGCATCGGGTAGGC 61.272 66.667 0.00 0.00 34.24 3.93
303 1869 2.588877 CAAGCATCGGGTAGGCCG 60.589 66.667 0.00 0.00 34.71 6.13
323 1889 2.802719 GGCCCAGTACTTTGGATCAAA 58.197 47.619 11.61 0.00 40.87 2.69
378 1944 2.518349 GTGTGTGGTGGTGGTGGG 60.518 66.667 0.00 0.00 0.00 4.61
408 1974 5.163683 GGGCGGGTTTCTTCTATTTACTTTC 60.164 44.000 0.00 0.00 0.00 2.62
516 2083 7.433719 TGACCATGTTTTTAAAGAATGTTCACG 59.566 33.333 0.00 0.00 0.00 4.35
702 2270 2.559330 GGCGTTCGCCGACAATTT 59.441 55.556 20.05 0.00 46.74 1.82
729 2301 4.181578 CCAACGAACGTTCTCCAGATAAT 58.818 43.478 24.80 0.00 36.00 1.28
730 2302 5.345702 CCAACGAACGTTCTCCAGATAATA 58.654 41.667 24.80 0.00 36.00 0.98
732 2304 6.311935 CCAACGAACGTTCTCCAGATAATAAA 59.688 38.462 24.80 0.00 36.00 1.40
733 2305 6.882458 ACGAACGTTCTCCAGATAATAAAC 57.118 37.500 24.80 0.00 0.00 2.01
734 2306 6.392354 ACGAACGTTCTCCAGATAATAAACA 58.608 36.000 24.80 0.00 0.00 2.83
735 2307 6.309737 ACGAACGTTCTCCAGATAATAAACAC 59.690 38.462 24.80 0.00 0.00 3.32
736 2308 6.237755 CGAACGTTCTCCAGATAATAAACACC 60.238 42.308 24.80 0.00 0.00 4.16
737 2309 6.295719 ACGTTCTCCAGATAATAAACACCT 57.704 37.500 0.00 0.00 0.00 4.00
738 2310 7.414222 ACGTTCTCCAGATAATAAACACCTA 57.586 36.000 0.00 0.00 0.00 3.08
739 2311 7.844009 ACGTTCTCCAGATAATAAACACCTAA 58.156 34.615 0.00 0.00 0.00 2.69
833 2408 2.954611 GGGAAGCCTCAAACGCAC 59.045 61.111 0.00 0.00 0.00 5.34
892 2468 3.477090 CGCCACATAAATAAAAGCGAACG 59.523 43.478 0.00 0.00 44.51 3.95
917 2493 1.204113 CCTCTGCTCCCACCCTTTCT 61.204 60.000 0.00 0.00 0.00 2.52
918 2494 0.695347 CTCTGCTCCCACCCTTTCTT 59.305 55.000 0.00 0.00 0.00 2.52
957 2540 3.470888 CTCGAACCCCCATCGCCT 61.471 66.667 0.00 0.00 40.04 5.52
958 2541 3.447025 CTCGAACCCCCATCGCCTC 62.447 68.421 0.00 0.00 40.04 4.70
959 2542 4.547367 CGAACCCCCATCGCCTCC 62.547 72.222 0.00 0.00 33.07 4.30
960 2543 3.407967 GAACCCCCATCGCCTCCA 61.408 66.667 0.00 0.00 0.00 3.86
961 2544 3.406595 GAACCCCCATCGCCTCCAG 62.407 68.421 0.00 0.00 0.00 3.86
975 2558 0.543749 CTCCAGCCCAGAAACCCTAG 59.456 60.000 0.00 0.00 0.00 3.02
981 2564 1.289244 CCCAGAAACCCTAGCCCCAT 61.289 60.000 0.00 0.00 0.00 4.00
1045 2631 1.075600 GTGGAGGAGGAGGAGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
1046 2632 1.230650 TGGAGGAGGAGGAGGAGGA 60.231 63.158 0.00 0.00 0.00 3.71
1047 2633 1.292941 TGGAGGAGGAGGAGGAGGAG 61.293 65.000 0.00 0.00 0.00 3.69
1048 2634 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1049 2635 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1050 2636 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1051 2637 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1052 2638 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1053 2639 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1054 2640 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1055 2641 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1056 2642 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1057 2643 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1058 2644 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1059 2645 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1060 2646 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1061 2647 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1062 2648 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1155 2741 3.151022 GAGGCGGAGGAGGAGGTG 61.151 72.222 0.00 0.00 0.00 4.00
1164 2750 2.053277 GGAGGAGGTGGACGAGGAC 61.053 68.421 0.00 0.00 0.00 3.85
1297 2891 4.484872 GCGTGGGGGCTAGGGTTC 62.485 72.222 0.00 0.00 0.00 3.62
1324 2918 3.858247 CTCGATTTAGAGGGTTTCCGTT 58.142 45.455 0.00 0.00 38.33 4.44
1325 2919 3.592059 TCGATTTAGAGGGTTTCCGTTG 58.408 45.455 0.00 0.00 38.33 4.10
1326 2920 2.676342 CGATTTAGAGGGTTTCCGTTGG 59.324 50.000 0.00 0.00 38.33 3.77
1328 2922 2.554370 TTAGAGGGTTTCCGTTGGTG 57.446 50.000 0.00 0.00 38.33 4.17
1329 2923 1.719529 TAGAGGGTTTCCGTTGGTGA 58.280 50.000 0.00 0.00 38.33 4.02
1333 2927 3.007635 GAGGGTTTCCGTTGGTGATTAG 58.992 50.000 0.00 0.00 38.33 1.73
1334 2928 2.374170 AGGGTTTCCGTTGGTGATTAGT 59.626 45.455 0.00 0.00 38.33 2.24
1341 2935 4.970711 TCCGTTGGTGATTAGTTTGGTTA 58.029 39.130 0.00 0.00 0.00 2.85
1342 2936 5.374921 TCCGTTGGTGATTAGTTTGGTTAA 58.625 37.500 0.00 0.00 0.00 2.01
1348 2946 9.139174 GTTGGTGATTAGTTTGGTTAATTCATG 57.861 33.333 0.00 0.00 0.00 3.07
1367 2965 0.600255 GGTTATCTGCATCCCGTCCG 60.600 60.000 0.00 0.00 0.00 4.79
1476 3076 6.486253 TTAACAATATATAGCAGCAGCAGC 57.514 37.500 3.17 0.46 45.49 5.25
1481 3081 2.808523 TATAGCAGCAGCAGCAGTAG 57.191 50.000 12.92 0.00 45.49 2.57
1482 3082 0.532417 ATAGCAGCAGCAGCAGTAGC 60.532 55.000 12.92 1.77 45.49 3.58
1486 3086 1.375652 AGCAGCAGCAGTAGCAGTG 60.376 57.895 3.17 0.00 45.49 3.66
1490 3090 2.897436 CAGCAGCAGTAGCAGTGATAA 58.103 47.619 0.00 0.00 45.49 1.75
1491 3091 3.464907 CAGCAGCAGTAGCAGTGATAAT 58.535 45.455 0.00 0.00 45.49 1.28
1492 3092 3.247886 CAGCAGCAGTAGCAGTGATAATG 59.752 47.826 11.30 11.30 45.49 1.90
1497 3097 6.459298 GCAGCAGTAGCAGTGATAATGATTTT 60.459 38.462 19.13 0.00 45.49 1.82
1547 3147 3.883669 AGATCTGGACTGAAATGAAGCC 58.116 45.455 0.00 0.00 0.00 4.35
1583 3183 3.690460 AGTGGCCCTTTTCATGTCTTAG 58.310 45.455 0.00 0.00 0.00 2.18
1584 3184 3.330701 AGTGGCCCTTTTCATGTCTTAGA 59.669 43.478 0.00 0.00 0.00 2.10
1585 3185 4.079253 GTGGCCCTTTTCATGTCTTAGAA 58.921 43.478 0.00 0.00 0.00 2.10
1586 3186 4.706962 GTGGCCCTTTTCATGTCTTAGAAT 59.293 41.667 0.00 0.00 0.00 2.40
1587 3187 4.706476 TGGCCCTTTTCATGTCTTAGAATG 59.294 41.667 0.00 0.00 0.00 2.67
1588 3188 4.706962 GGCCCTTTTCATGTCTTAGAATGT 59.293 41.667 0.00 0.00 0.00 2.71
1593 3193 8.960591 CCCTTTTCATGTCTTAGAATGTAATGT 58.039 33.333 0.00 0.00 0.00 2.71
1609 3209 6.978343 TGTAATGTAATGCAGTAGTTGTCC 57.022 37.500 0.00 0.00 0.00 4.02
1616 3216 1.339055 TGCAGTAGTTGTCCAGATGCC 60.339 52.381 0.00 0.00 0.00 4.40
1629 3229 1.199327 CAGATGCCTGCAGTCTTTGTG 59.801 52.381 13.81 0.00 33.07 3.33
1645 3245 5.739161 GTCTTTGTGTTCTTGTGCAAAGTAG 59.261 40.000 13.30 0.00 44.57 2.57
1652 3252 3.141398 TCTTGTGCAAAGTAGGAAGCAG 58.859 45.455 0.00 0.00 37.72 4.24
1692 3292 7.592938 CAATGGTGTTTGAGCTTAATCAGTTA 58.407 34.615 2.45 0.00 0.00 2.24
1734 3334 1.099689 TTATTTGCGCCTGCCTAACC 58.900 50.000 4.18 0.00 41.78 2.85
1962 3564 2.103388 CATGTGCGCATTTGATACACG 58.897 47.619 15.91 0.00 33.96 4.49
1965 3567 2.031595 TGTGCGCATTTGATACACGTTT 60.032 40.909 15.91 0.00 33.96 3.60
2339 3942 3.201708 CCATCCTCATTTCCTGTCTTCCT 59.798 47.826 0.00 0.00 0.00 3.36
2450 4053 0.537371 GCCCTACTGCACTGGTGTTT 60.537 55.000 2.64 0.00 0.00 2.83
2508 4111 1.736645 AGATGCACACGCGGTACAC 60.737 57.895 12.47 0.00 42.97 2.90
2521 4124 1.404986 CGGTACACGGTCAATGTCCAT 60.405 52.381 0.00 0.00 39.42 3.41
2522 4125 2.277084 GGTACACGGTCAATGTCCATC 58.723 52.381 0.00 0.00 0.00 3.51
2523 4126 2.093658 GGTACACGGTCAATGTCCATCT 60.094 50.000 0.00 0.00 0.00 2.90
2564 4167 2.135933 CGATGAGGCGACCTAAAATCC 58.864 52.381 0.00 0.00 31.76 3.01
2584 4187 5.843019 TCCTGTCTCCTTTTCTGGTTAAT 57.157 39.130 0.00 0.00 0.00 1.40
2585 4188 6.945636 TCCTGTCTCCTTTTCTGGTTAATA 57.054 37.500 0.00 0.00 0.00 0.98
2586 4189 6.947464 TCCTGTCTCCTTTTCTGGTTAATAG 58.053 40.000 0.00 0.00 0.00 1.73
2693 4296 9.802039 TTGGATTCTAAGTACACCTGTTAATTT 57.198 29.630 0.00 0.00 0.00 1.82
2771 4393 2.802816 GGCGCTCCTGTTATTCTGTATG 59.197 50.000 7.64 0.00 0.00 2.39
2776 4398 4.384056 CTCCTGTTATTCTGTATGCTGGG 58.616 47.826 0.00 0.00 0.00 4.45
2777 4399 3.780294 TCCTGTTATTCTGTATGCTGGGT 59.220 43.478 0.00 0.00 0.00 4.51
2785 4407 0.036164 TGTATGCTGGGTTGCGAGTT 59.964 50.000 0.00 0.00 35.36 3.01
2789 4411 0.107831 TGCTGGGTTGCGAGTTTAGT 59.892 50.000 0.00 0.00 35.36 2.24
2799 4421 5.163884 GGTTGCGAGTTTAGTCCATTTACTC 60.164 44.000 0.00 0.00 33.58 2.59
2808 4430 9.495382 AGTTTAGTCCATTTACTCCTAGATTCT 57.505 33.333 0.00 0.00 0.00 2.40
2815 4437 7.400339 TCCATTTACTCCTAGATTCTTGTGTCT 59.600 37.037 0.00 0.00 0.00 3.41
2864 4486 2.122056 ACTGTAGGGGACGCCCTT 59.878 61.111 5.89 5.41 44.66 3.95
2866 4488 2.686106 TGTAGGGGACGCCCTTCC 60.686 66.667 5.89 0.00 44.66 3.46
2893 4515 0.399806 GGAGGGCAGAAGAGGAGGAT 60.400 60.000 0.00 0.00 0.00 3.24
2909 4531 3.254657 GGAGGATGATGAAGAGTACCTCG 59.745 52.174 0.00 0.00 42.00 4.63
3046 4668 3.377172 CCTCAATAACCAACTTAAGCCGG 59.623 47.826 1.29 5.79 0.00 6.13
3127 4749 8.354426 TGACAATGAAATATGGCATACATTCAG 58.646 33.333 27.47 21.30 41.03 3.02
3140 4763 7.826744 TGGCATACATTCAGAAACACATAACTA 59.173 33.333 0.00 0.00 0.00 2.24
3207 4830 8.095792 TGATTATCAGCAACATTGTTTTCCAAT 58.904 29.630 0.00 0.00 44.73 3.16
3216 4839 5.058490 ACATTGTTTTCCAATCCAAGCAAG 58.942 37.500 0.00 0.00 41.93 4.01
3233 4856 6.220930 CAAGCAAGCATATATTTGATGGCTT 58.779 36.000 17.20 17.20 0.00 4.35
3322 4945 9.498176 TCATAAAGTTACACTTTTAAGAGACCC 57.502 33.333 7.17 0.00 45.38 4.46
3430 5054 2.551459 GGCTGTGCATCCATATGAGAAC 59.449 50.000 3.65 0.00 34.84 3.01
3596 5220 6.968335 TGCTAAAGACTTCCGTTTTGTAAAAC 59.032 34.615 9.58 9.58 43.61 2.43
3649 5273 6.758886 GGTTGACCAGATTATCTGTAGTTCTG 59.241 42.308 19.37 6.22 42.80 3.02
3743 5367 7.610580 TGGATGGGTCTTTTGTTTTATTTCT 57.389 32.000 0.00 0.00 0.00 2.52
3777 5401 4.818005 TCATATCGTCAAAAGCATGCTGAT 59.182 37.500 23.48 19.54 0.00 2.90
3849 5473 8.646004 TCCTTTCTAATAGGATGACATCTTCAG 58.354 37.037 14.95 6.44 37.77 3.02
3933 5558 7.086376 GCATAAATGGACAAATGCGAGATTAT 58.914 34.615 0.00 0.00 35.81 1.28
3957 5582 2.777692 ACTAGCTGGGCTTAATTGGCTA 59.222 45.455 0.85 0.00 40.44 3.93
3972 5597 4.617253 TTGGCTAATACGGCTGTATGAT 57.383 40.909 18.87 7.01 40.42 2.45
4262 5889 3.575965 AACTGGATGAACGAAATTGCC 57.424 42.857 0.00 0.00 0.00 4.52
4382 6012 6.316140 TCAGCTGGCATGTTAACTATACTTTG 59.684 38.462 15.13 0.00 0.00 2.77
4499 6129 3.648339 AATGCATTGAAGCGTTTCAGT 57.352 38.095 12.09 9.45 43.76 3.41
4650 6280 4.240096 CCTTTGGCAGTGCTATTTCTTTG 58.760 43.478 16.11 0.00 0.00 2.77
4762 6397 5.824904 ATGTATTGCAGAACAATCTCCAC 57.175 39.130 7.22 0.00 46.28 4.02
4851 6486 5.068591 AGTGGTTCCAAATTACTGGTGAAAC 59.931 40.000 0.00 0.00 37.74 2.78
5137 6803 1.156736 CTGGTGGTGAGCGTAAAAGG 58.843 55.000 0.00 0.00 0.00 3.11
5152 6818 5.391629 GCGTAAAAGGTTGCTTAACATAGCT 60.392 40.000 0.00 0.00 41.76 3.32
5245 6911 4.080863 ACTGGTGACCATCTTATTGAGACC 60.081 45.833 4.03 0.00 37.17 3.85
5421 7238 6.317140 TGCTTATTTTCTCACAGGTGATCATC 59.683 38.462 0.00 0.00 39.13 2.92
5428 7245 6.342338 TCTCACAGGTGATCATCTATCATG 57.658 41.667 8.51 5.37 46.21 3.07
5437 7254 7.124901 AGGTGATCATCTATCATGTACCATACC 59.875 40.741 6.73 0.00 46.21 2.73
5444 7261 9.302345 CATCTATCATGTACCATACCGATTTAC 57.698 37.037 0.00 0.00 0.00 2.01
5447 7264 7.905604 ATCATGTACCATACCGATTTACATG 57.094 36.000 11.96 11.96 46.02 3.21
5448 7265 6.227522 TCATGTACCATACCGATTTACATGG 58.772 40.000 16.17 0.00 45.27 3.66
5449 7266 4.382291 TGTACCATACCGATTTACATGGC 58.618 43.478 0.00 0.00 41.41 4.40
5450 7267 3.569194 ACCATACCGATTTACATGGCA 57.431 42.857 0.00 0.00 41.41 4.92
5451 7268 3.476552 ACCATACCGATTTACATGGCAG 58.523 45.455 0.00 0.00 41.41 4.85
5453 7270 3.498397 CCATACCGATTTACATGGCAGTC 59.502 47.826 0.00 0.00 32.12 3.51
5454 7271 4.380531 CATACCGATTTACATGGCAGTCT 58.619 43.478 0.00 0.00 0.00 3.24
5455 7272 5.510690 CCATACCGATTTACATGGCAGTCTA 60.511 44.000 0.00 0.00 32.12 2.59
5456 7273 4.060038 ACCGATTTACATGGCAGTCTAG 57.940 45.455 0.00 0.00 0.00 2.43
5462 7279 7.315890 CGATTTACATGGCAGTCTAGATATCA 58.684 38.462 5.32 0.00 0.00 2.15
5483 7300 7.912056 ATCACATATTAGGAAATCATGGTCG 57.088 36.000 0.00 0.00 0.00 4.79
5519 7336 3.207265 ACACATGCACCTTGTTACAGA 57.793 42.857 0.00 0.00 0.00 3.41
5907 7747 1.663135 GATCTTCAAGCTCAAGACCGC 59.337 52.381 9.66 1.29 32.65 5.68
5975 7815 3.810941 TGCACCGAGGTTTGTTAAGTTAG 59.189 43.478 0.00 0.00 0.00 2.34
6017 7857 3.343617 GCTTTTGGCAGGTATGTGTCTA 58.656 45.455 0.00 0.00 41.35 2.59
6071 7911 3.999663 AGGAAAAAGTGATTGAGAGAGCG 59.000 43.478 0.00 0.00 0.00 5.03
6437 8312 3.023119 ACAGTATGCACCTCTCTCTCTG 58.977 50.000 0.00 0.00 42.53 3.35
6438 8313 3.023119 CAGTATGCACCTCTCTCTCTGT 58.977 50.000 0.00 0.00 0.00 3.41
6533 8414 7.221452 GCTGAATTGTATGATTTTGATGGTGAC 59.779 37.037 0.00 0.00 0.00 3.67
6615 8496 2.213499 CCAACTGACTCTGCTTTTCGT 58.787 47.619 0.00 0.00 0.00 3.85
7152 9034 7.156876 TGTTTCCCAGTTGTCATTGATAATC 57.843 36.000 0.00 0.00 0.00 1.75
7154 9036 4.450976 TCCCAGTTGTCATTGATAATCGG 58.549 43.478 0.00 3.62 0.00 4.18
7215 9097 6.604795 CCAACCAGAAGAAAGATACCATTGAT 59.395 38.462 0.00 0.00 0.00 2.57
7508 9390 5.470098 AGACTTCAACACATTTATTCGTGCT 59.530 36.000 0.00 0.00 36.57 4.40
7615 9497 6.428159 GCTGAAGTTTTCAAGGAGAGATACAA 59.572 38.462 0.00 0.00 39.58 2.41
7643 9525 4.713553 TGAGTGGTAAGCAATTGAGTCAA 58.286 39.130 10.34 8.27 0.00 3.18
7651 9533 7.123098 TGGTAAGCAATTGAGTCAATTCATCAT 59.877 33.333 24.99 13.79 41.40 2.45
7713 9595 4.243007 GCAACTTGCCTCAATAACAACT 57.757 40.909 1.95 0.00 37.42 3.16
7728 9610 3.508744 ACAACTGACTGTTTTGCTTGG 57.491 42.857 0.00 0.00 36.63 3.61
7733 9615 2.426738 CTGACTGTTTTGCTTGGGTGAA 59.573 45.455 0.00 0.00 0.00 3.18
7743 9625 1.963515 GCTTGGGTGAATGGTCAACTT 59.036 47.619 0.00 0.00 41.62 2.66
7748 9630 5.523438 TGGGTGAATGGTCAACTTTAAAC 57.477 39.130 0.00 0.00 41.62 2.01
7961 9843 4.750598 GGGAAGTTCTATAACGAGGAATGC 59.249 45.833 2.25 0.00 40.73 3.56
7993 9875 2.252714 GGTATGCCCTCTCCCTTCTAG 58.747 57.143 0.00 0.00 0.00 2.43
8001 9883 2.630580 CCTCTCCCTTCTAGTGCATACC 59.369 54.545 0.00 0.00 0.00 2.73
8132 10014 1.076332 CACCCTTGTTCCGATTCGAC 58.924 55.000 7.83 0.00 0.00 4.20
8147 10029 0.179234 TCGACTGGTTTGTGAAGGCA 59.821 50.000 0.00 0.00 0.00 4.75
8217 10099 8.921670 GTCTAGTTGAGAAAGAGAATCAAGAAC 58.078 37.037 0.00 0.00 34.20 3.01
8231 10113 2.030274 TCAAGAACACGATGAGCGAGAA 60.030 45.455 0.00 0.00 44.57 2.87
8246 10128 1.301677 GAGAAAGGCAGGCACGGAAG 61.302 60.000 0.00 0.00 0.00 3.46
8305 10193 8.861033 TGAACATCTTGATTTTGTTCTTCTTG 57.139 30.769 14.05 0.00 45.93 3.02
8320 10208 6.312918 TGTTCTTCTTGCGACATTACTAATCC 59.687 38.462 0.00 0.00 0.00 3.01
8366 10254 2.254546 AGATGACACCAACGAAGCAA 57.745 45.000 0.00 0.00 0.00 3.91
8375 10263 2.948979 ACCAACGAAGCAAAAGATGACA 59.051 40.909 0.00 0.00 0.00 3.58
8392 10301 3.554934 TGACACCAACAAAGCAGAAGAT 58.445 40.909 0.00 0.00 0.00 2.40
8476 10385 4.642429 TCCAAGAAGGTAGCAGTTTCTTC 58.358 43.478 5.05 0.00 38.68 2.87
8486 10395 4.278678 AGCAGTTTCTTCTTGTTGAACG 57.721 40.909 0.00 0.00 0.00 3.95
8494 10403 1.295792 TCTTGTTGAACGTCACTGGC 58.704 50.000 0.00 0.00 0.00 4.85
8505 10414 1.608590 CGTCACTGGCCTTGATTTTGT 59.391 47.619 3.32 0.00 0.00 2.83
8506 10415 2.034558 CGTCACTGGCCTTGATTTTGTT 59.965 45.455 3.32 0.00 0.00 2.83
8507 10416 3.642705 GTCACTGGCCTTGATTTTGTTC 58.357 45.455 3.32 0.00 0.00 3.18
8513 10422 5.833131 ACTGGCCTTGATTTTGTTCTTCTTA 59.167 36.000 3.32 0.00 0.00 2.10
8516 10428 6.101997 GGCCTTGATTTTGTTCTTCTTATGG 58.898 40.000 0.00 0.00 0.00 2.74
8595 10507 3.502211 AGAAAATGACACCTACAAAGCGG 59.498 43.478 0.00 0.00 0.00 5.52
8682 10594 1.448985 GCTCGGTATGTCCAAGCAAA 58.551 50.000 0.00 0.00 45.02 3.68
8683 10595 1.810151 GCTCGGTATGTCCAAGCAAAA 59.190 47.619 0.00 0.00 45.02 2.44
8690 10602 5.410924 GGTATGTCCAAGCAAAATCCTTTC 58.589 41.667 0.00 0.00 35.97 2.62
8697 10609 4.038402 CCAAGCAAAATCCTTTCTGTCAGT 59.962 41.667 0.00 0.00 0.00 3.41
8698 10610 5.452356 CCAAGCAAAATCCTTTCTGTCAGTT 60.452 40.000 0.00 0.00 0.00 3.16
8699 10611 5.192327 AGCAAAATCCTTTCTGTCAGTTG 57.808 39.130 0.00 0.00 0.00 3.16
8740 10658 2.780714 AGAGATGATTATGCTGCTGCC 58.219 47.619 13.47 0.00 38.71 4.85
8791 10709 1.076438 CAGGGAAAGAAGGGGAAGGT 58.924 55.000 0.00 0.00 0.00 3.50
8800 10718 1.774894 AAGGGGAAGGTGTAAGCGCA 61.775 55.000 11.47 0.00 40.95 6.09
8816 10734 1.374252 GCAGGTGATCCGACGTTGT 60.374 57.895 1.30 0.00 39.05 3.32
8863 10781 0.729690 GGCTTCTTCCAGCGCTTAAG 59.270 55.000 18.92 18.92 41.12 1.85
8873 10791 2.037251 CCAGCGCTTAAGGCCTCTTATA 59.963 50.000 7.50 0.00 35.61 0.98
8922 10842 4.992319 TGTTGGTTAGGTTAATCACTGTCG 59.008 41.667 0.00 0.00 0.00 4.35
8937 10857 8.603242 AATCACTGTCGAAGTAAGTTTAATGT 57.397 30.769 0.00 0.00 36.83 2.71
8943 10863 9.135843 CTGTCGAAGTAAGTTTAATGTCATGTA 57.864 33.333 0.00 0.00 0.00 2.29
9020 10946 2.356194 GCCTTTTGGTGCTTGCGG 60.356 61.111 0.00 0.00 42.99 5.69
9048 10974 2.080693 TGGTATGCAAACGGCTACAAG 58.919 47.619 0.00 0.00 45.15 3.16
9052 10978 4.142469 GGTATGCAAACGGCTACAAGAATT 60.142 41.667 0.00 0.00 45.15 2.17
9092 11018 5.179742 TGCATTGAATTTCAATTTGCTCCAC 59.820 36.000 26.13 10.95 44.03 4.02
9105 11031 4.498894 TTGCTCCACATGAATCATCTCT 57.501 40.909 0.00 0.00 0.00 3.10
9110 11036 5.695816 GCTCCACATGAATCATCTCTAGTTC 59.304 44.000 0.00 0.00 0.00 3.01
9111 11037 6.462768 GCTCCACATGAATCATCTCTAGTTCT 60.463 42.308 0.00 0.00 0.00 3.01
9112 11038 7.048629 TCCACATGAATCATCTCTAGTTCTC 57.951 40.000 0.00 0.00 0.00 2.87
9138 11064 5.057149 CAGTAGTTTCTAACACAAGTGGCT 58.943 41.667 5.08 0.00 34.19 4.75
9143 11069 1.974957 TCTAACACAAGTGGCTAGCCA 59.025 47.619 32.88 32.88 45.02 4.75
9152 11078 1.993391 TGGCTAGCCACCTGTACCC 60.993 63.158 32.88 2.62 41.89 3.69
9153 11079 1.993391 GGCTAGCCACCTGTACCCA 60.993 63.158 29.33 0.00 35.81 4.51
9154 11080 1.522569 GCTAGCCACCTGTACCCAG 59.477 63.158 2.29 0.00 38.50 4.45
9155 11081 1.522569 CTAGCCACCTGTACCCAGC 59.477 63.158 0.00 0.00 37.38 4.85
9156 11082 1.229368 TAGCCACCTGTACCCAGCA 60.229 57.895 0.00 0.00 37.38 4.41
9157 11083 1.550130 TAGCCACCTGTACCCAGCAC 61.550 60.000 0.00 0.00 37.38 4.40
9158 11084 3.156714 CCACCTGTACCCAGCACA 58.843 61.111 0.00 0.00 37.38 4.57
9159 11085 1.454104 CCACCTGTACCCAGCACAA 59.546 57.895 0.00 0.00 37.38 3.33
9160 11086 0.606401 CCACCTGTACCCAGCACAAG 60.606 60.000 0.00 0.00 37.38 3.16
9161 11087 1.073199 ACCTGTACCCAGCACAAGC 59.927 57.895 0.00 0.00 37.38 4.01
9209 11135 3.839432 CGAGGTCCTCCGCCCTTC 61.839 72.222 13.54 0.00 39.05 3.46
9210 11136 2.683933 GAGGTCCTCCGCCCTTCA 60.684 66.667 7.78 0.00 39.05 3.02
9211 11137 2.203938 AGGTCCTCCGCCCTTCAA 60.204 61.111 0.00 0.00 39.05 2.69
9213 11139 1.452108 GGTCCTCCGCCCTTCAATG 60.452 63.158 0.00 0.00 0.00 2.82
9214 11140 1.299976 GTCCTCCGCCCTTCAATGT 59.700 57.895 0.00 0.00 0.00 2.71
9215 11141 0.322546 GTCCTCCGCCCTTCAATGTT 60.323 55.000 0.00 0.00 0.00 2.71
9216 11142 0.035439 TCCTCCGCCCTTCAATGTTC 60.035 55.000 0.00 0.00 0.00 3.18
9217 11143 0.322456 CCTCCGCCCTTCAATGTTCA 60.322 55.000 0.00 0.00 0.00 3.18
9218 11144 1.089920 CTCCGCCCTTCAATGTTCAG 58.910 55.000 0.00 0.00 0.00 3.02
9219 11145 0.400213 TCCGCCCTTCAATGTTCAGT 59.600 50.000 0.00 0.00 0.00 3.41
9220 11146 0.523072 CCGCCCTTCAATGTTCAGTG 59.477 55.000 0.00 0.00 0.00 3.66
9222 11148 0.244721 GCCCTTCAATGTTCAGTGCC 59.755 55.000 0.00 0.00 0.00 5.01
9224 11150 0.523072 CCTTCAATGTTCAGTGCCGG 59.477 55.000 0.00 0.00 0.00 6.13
9225 11151 0.109597 CTTCAATGTTCAGTGCCGGC 60.110 55.000 22.73 22.73 0.00 6.13
9227 11153 2.031919 AATGTTCAGTGCCGGCGA 59.968 55.556 23.90 10.59 0.00 5.54
9228 11154 2.034879 AATGTTCAGTGCCGGCGAG 61.035 57.895 23.90 14.28 0.00 5.03
9229 11155 3.958147 ATGTTCAGTGCCGGCGAGG 62.958 63.158 23.90 13.52 44.97 4.63
9230 11156 4.681978 GTTCAGTGCCGGCGAGGT 62.682 66.667 23.90 2.35 43.70 3.85
9231 11157 4.373116 TTCAGTGCCGGCGAGGTC 62.373 66.667 23.90 9.52 43.70 3.85
9275 11213 1.999634 AAAGGAGTGCTGGTGGTGCT 62.000 55.000 0.00 0.00 0.00 4.40
9278 11216 3.839353 GAGTGCTGGTGGTGCTGCT 62.839 63.158 0.00 0.00 0.00 4.24
9301 11239 2.187946 CGGTGAGGAGGTCATGGC 59.812 66.667 0.00 0.00 37.56 4.40
9302 11240 2.187946 GGTGAGGAGGTCATGGCG 59.812 66.667 0.00 0.00 37.56 5.69
9303 11241 2.512515 GTGAGGAGGTCATGGCGC 60.513 66.667 0.00 0.00 37.56 6.53
9304 11242 2.685017 TGAGGAGGTCATGGCGCT 60.685 61.111 7.64 0.00 0.00 5.92
9305 11243 2.202987 GAGGAGGTCATGGCGCTG 60.203 66.667 7.64 0.00 0.00 5.18
9306 11244 3.005539 AGGAGGTCATGGCGCTGT 61.006 61.111 7.64 0.00 0.00 4.40
9330 11297 5.431179 GGGGGTTCATTAGACTTTGTAGA 57.569 43.478 0.00 0.00 0.00 2.59
9331 11298 5.812286 GGGGGTTCATTAGACTTTGTAGAA 58.188 41.667 0.00 0.00 0.00 2.10
9361 11331 9.181805 GTTACATTTTCTAAAAAGAAGGCAGAC 57.818 33.333 0.00 0.00 0.00 3.51
9365 11335 7.823745 TTTTCTAAAAAGAAGGCAGACTCAT 57.176 32.000 0.00 0.00 0.00 2.90
9380 11350 5.616424 GCAGACTCATTTACAAGACTTGCTG 60.616 44.000 15.24 11.20 0.00 4.41
9404 11374 6.488006 TGAATAGCTCCTTCTAAATGGCATTC 59.512 38.462 14.04 0.00 0.00 2.67
9405 11375 3.560105 AGCTCCTTCTAAATGGCATTCC 58.440 45.455 14.04 0.00 0.00 3.01
9408 11378 4.530875 CTCCTTCTAAATGGCATTCCACT 58.469 43.478 14.04 0.00 46.92 4.00
9410 11380 6.073447 TCCTTCTAAATGGCATTCCACTTA 57.927 37.500 14.04 0.75 46.92 2.24
9440 11410 2.877335 CTCAACGGTAGTGGACTTAGC 58.123 52.381 0.00 0.00 0.00 3.09
9451 11421 2.766828 GTGGACTTAGCTAGGGTGATGT 59.233 50.000 7.87 0.00 0.00 3.06
9457 11427 2.559381 AGCTAGGGTGATGTCCTCTT 57.441 50.000 0.00 0.00 35.92 2.85
9464 11434 1.341383 GGTGATGTCCTCTTGCCCATT 60.341 52.381 0.00 0.00 0.00 3.16
9498 11468 5.993055 TCATCATGGACTCTTTATGCAAGA 58.007 37.500 0.00 0.00 39.39 3.02
9515 11485 5.580911 GCAAGATTTTTGAAATTGCGAGT 57.419 34.783 0.00 0.00 37.16 4.18
9528 11498 2.380084 TGCGAGTAGTGTGGGATTTC 57.620 50.000 0.00 0.00 0.00 2.17
9552 11523 6.425721 TCGTACCCTTTCAGAAATAAACACTG 59.574 38.462 0.00 0.00 0.00 3.66
9557 11529 5.796935 CCTTTCAGAAATAAACACTGCATCG 59.203 40.000 0.00 0.00 0.00 3.84
9584 11556 6.420306 GCAGCGATTCTCCATATATGTAGATG 59.580 42.308 8.65 5.44 0.00 2.90
9585 11557 7.682981 GCAGCGATTCTCCATATATGTAGATGA 60.683 40.741 8.65 0.00 0.00 2.92
9586 11558 8.358895 CAGCGATTCTCCATATATGTAGATGAT 58.641 37.037 8.65 1.27 0.00 2.45
9587 11559 8.358895 AGCGATTCTCCATATATGTAGATGATG 58.641 37.037 8.65 2.17 0.00 3.07
9588 11560 8.140628 GCGATTCTCCATATATGTAGATGATGT 58.859 37.037 8.65 0.00 0.00 3.06
9589 11561 9.460906 CGATTCTCCATATATGTAGATGATGTG 57.539 37.037 8.65 0.00 0.00 3.21
9590 11562 9.761504 GATTCTCCATATATGTAGATGATGTGG 57.238 37.037 8.65 0.00 34.19 4.17
9591 11563 8.670521 TTCTCCATATATGTAGATGATGTGGT 57.329 34.615 8.65 0.00 34.44 4.16
9592 11564 8.670521 TCTCCATATATGTAGATGATGTGGTT 57.329 34.615 11.73 0.00 34.44 3.67
9593 11565 8.534496 TCTCCATATATGTAGATGATGTGGTTG 58.466 37.037 11.73 0.00 34.44 3.77
9594 11566 8.206126 TCCATATATGTAGATGATGTGGTTGT 57.794 34.615 11.73 0.00 34.44 3.32
9595 11567 8.314021 TCCATATATGTAGATGATGTGGTTGTC 58.686 37.037 11.73 0.00 34.44 3.18
9596 11568 7.550551 CCATATATGTAGATGATGTGGTTGTCC 59.449 40.741 11.73 0.00 29.73 4.02
9597 11569 6.753913 ATATGTAGATGATGTGGTTGTCCT 57.246 37.500 0.00 0.00 34.23 3.85
9598 11570 4.471904 TGTAGATGATGTGGTTGTCCTC 57.528 45.455 0.00 0.00 34.23 3.71
9599 11571 3.197766 TGTAGATGATGTGGTTGTCCTCC 59.802 47.826 0.00 0.00 34.23 4.30
9600 11572 1.561542 AGATGATGTGGTTGTCCTCCC 59.438 52.381 0.00 0.00 34.23 4.30
9601 11573 0.253044 ATGATGTGGTTGTCCTCCCG 59.747 55.000 0.00 0.00 34.23 5.14
9602 11574 1.745489 GATGTGGTTGTCCTCCCGC 60.745 63.158 0.00 0.00 34.23 6.13
9603 11575 2.463589 GATGTGGTTGTCCTCCCGCA 62.464 60.000 0.00 0.00 44.71 5.69
9604 11576 2.063015 ATGTGGTTGTCCTCCCGCAA 62.063 55.000 0.00 0.00 43.89 4.85
9605 11577 1.527380 GTGGTTGTCCTCCCGCAAA 60.527 57.895 0.00 0.00 34.23 3.68
9606 11578 1.104577 GTGGTTGTCCTCCCGCAAAA 61.105 55.000 0.00 0.00 34.23 2.44
9607 11579 0.395862 TGGTTGTCCTCCCGCAAAAA 60.396 50.000 0.00 0.00 34.23 1.94
9667 11639 5.726980 ATAGCCAAACACAATGATGTTGT 57.273 34.783 2.89 0.00 42.01 3.32
9695 11667 5.645497 TGCTAAGCTTCTTCTGGAGATTTTC 59.355 40.000 0.00 0.00 33.49 2.29
9707 11679 3.059188 TGGAGATTTTCGTTGTTCTTCGC 60.059 43.478 0.00 0.00 0.00 4.70
9709 11681 2.096417 AGATTTTCGTTGTTCTTCGCGG 60.096 45.455 6.13 0.00 0.00 6.46
9745 13605 6.038356 CGAATGCAAAAATGCTCTATTTCCT 58.962 36.000 0.00 0.00 38.01 3.36
9790 13650 4.582656 TGATTGGTGAATTCGGAAGTTTGT 59.417 37.500 0.04 0.00 0.00 2.83
9791 13651 4.993029 TTGGTGAATTCGGAAGTTTGTT 57.007 36.364 0.04 0.00 0.00 2.83
9792 13652 4.561735 TGGTGAATTCGGAAGTTTGTTC 57.438 40.909 0.04 0.00 0.00 3.18
9793 13653 3.948473 TGGTGAATTCGGAAGTTTGTTCA 59.052 39.130 0.04 0.00 0.00 3.18
9794 13654 4.036262 TGGTGAATTCGGAAGTTTGTTCAG 59.964 41.667 0.04 0.00 0.00 3.02
9795 13655 3.975035 GTGAATTCGGAAGTTTGTTCAGC 59.025 43.478 0.04 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 1.680522 ATGTCTGAGCCTGGGTAGCG 61.681 60.000 0.00 0.00 34.64 4.26
162 163 2.045524 ACATCCCTATGTCTGAGCCTG 58.954 52.381 0.00 0.00 42.92 4.85
165 166 2.484417 CCACACATCCCTATGTCTGAGC 60.484 54.545 0.00 0.00 44.70 4.26
187 1753 3.087906 GGGGGTCCTATGTGGCGT 61.088 66.667 0.00 0.00 35.26 5.68
192 1758 0.843984 CAAATCCGGGGGTCCTATGT 59.156 55.000 0.00 0.00 0.00 2.29
195 1761 1.693404 CCTACAAATCCGGGGGTCCTA 60.693 57.143 0.00 0.00 0.00 2.94
198 1764 1.530283 CCCTACAAATCCGGGGGTC 59.470 63.158 0.00 0.00 35.49 4.46
199 1765 3.749785 CCCTACAAATCCGGGGGT 58.250 61.111 0.00 0.00 35.49 4.95
212 1778 1.077068 CTCGCAAATTGGGCCCCTA 60.077 57.895 22.27 7.94 0.00 3.53
297 1863 1.614226 AAAGTACTGGGCCGGCCTA 60.614 57.895 42.70 37.30 36.10 3.93
298 1864 2.933834 AAAGTACTGGGCCGGCCT 60.934 61.111 42.70 27.41 36.10 5.19
299 1865 2.750237 CAAAGTACTGGGCCGGCC 60.750 66.667 38.57 38.57 0.00 6.13
301 1867 0.463833 GATCCAAAGTACTGGGCCGG 60.464 60.000 11.83 11.83 37.06 6.13
303 1869 2.492088 GTTTGATCCAAAGTACTGGGCC 59.508 50.000 8.62 0.00 37.06 5.80
305 1871 4.398319 AGTGTTTGATCCAAAGTACTGGG 58.602 43.478 0.00 1.26 37.06 4.45
323 1889 3.451178 ACCTATCGCTTCCATACAAGTGT 59.549 43.478 0.00 0.00 35.68 3.55
352 1918 1.423450 CACCACACACACACACACG 59.577 57.895 0.00 0.00 0.00 4.49
353 1919 0.958382 ACCACCACACACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
354 1920 0.957888 CACCACCACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
355 1921 1.653094 CCACCACCACACACACACAC 61.653 60.000 0.00 0.00 0.00 3.82
384 1950 3.882444 AGTAAATAGAAGAAACCCGCCC 58.118 45.455 0.00 0.00 0.00 6.13
387 1953 5.941647 TGGGAAAGTAAATAGAAGAAACCCG 59.058 40.000 0.00 0.00 35.70 5.28
388 1954 6.717997 TGTGGGAAAGTAAATAGAAGAAACCC 59.282 38.462 0.00 0.00 0.00 4.11
408 1974 8.661352 ACATTTTTAGTCTTTGATTTTGTGGG 57.339 30.769 0.00 0.00 0.00 4.61
493 2060 7.922505 TCGTGAACATTCTTTAAAAACATGG 57.077 32.000 0.00 0.00 0.00 3.66
626 2193 6.021782 CGCGTATTGTAAAACAAATCATGGAC 60.022 38.462 0.00 0.00 41.96 4.02
628 2195 5.275695 GCGCGTATTGTAAAACAAATCATGG 60.276 40.000 8.43 0.00 41.96 3.66
686 2254 1.058057 GACAAATTGTCGGCGAACGC 61.058 55.000 12.92 10.81 43.86 4.84
702 2270 0.249573 GAGAACGTTCGTTGGGGACA 60.250 55.000 21.87 0.00 39.83 4.02
746 2318 1.439679 GTTGGGCTCGGTAAAGACTG 58.560 55.000 0.00 0.00 0.00 3.51
892 2468 3.005539 TGGGAGCAGAGGAGTGGC 61.006 66.667 0.00 0.00 0.00 5.01
957 2540 1.562672 GCTAGGGTTTCTGGGCTGGA 61.563 60.000 0.00 0.00 0.00 3.86
958 2541 1.077429 GCTAGGGTTTCTGGGCTGG 60.077 63.158 0.00 0.00 0.00 4.85
959 2542 1.077429 GGCTAGGGTTTCTGGGCTG 60.077 63.158 0.00 0.00 44.32 4.85
960 2543 2.309504 GGGCTAGGGTTTCTGGGCT 61.310 63.158 0.00 0.00 46.38 5.19
961 2544 2.275748 GGGCTAGGGTTTCTGGGC 59.724 66.667 0.00 0.00 46.43 5.36
962 2545 1.289244 ATGGGGCTAGGGTTTCTGGG 61.289 60.000 0.00 0.00 0.00 4.45
963 2546 0.183731 GATGGGGCTAGGGTTTCTGG 59.816 60.000 0.00 0.00 0.00 3.86
1045 2631 0.185175 GACTCCTCCTCCTCCTCCTC 59.815 65.000 0.00 0.00 0.00 3.71
1046 2632 1.293683 GGACTCCTCCTCCTCCTCCT 61.294 65.000 0.00 0.00 33.07 3.69
1047 2633 1.231928 GGACTCCTCCTCCTCCTCC 59.768 68.421 0.00 0.00 33.07 4.30
1048 2634 2.328051 AGGACTCCTCCTCCTCCTC 58.672 63.158 0.00 0.00 44.59 3.71
1049 2635 4.641800 AGGACTCCTCCTCCTCCT 57.358 61.111 0.00 0.00 44.59 3.69
1155 2741 1.500512 CCTCGATCTCGTCCTCGTCC 61.501 65.000 0.00 0.00 40.80 4.79
1164 2750 2.024871 GTGACGGCCTCGATCTCG 59.975 66.667 0.00 0.00 40.11 4.04
1209 2795 4.824515 CCGCCGTCCTCCTCCTCT 62.825 72.222 0.00 0.00 0.00 3.69
1227 2813 1.098712 CCTCCTCCTCGTCCTCTTCG 61.099 65.000 0.00 0.00 0.00 3.79
1230 2816 1.919771 CTCCTCCTCCTCGTCCTCT 59.080 63.158 0.00 0.00 0.00 3.69
1236 2822 4.507916 TCCGGCTCCTCCTCCTCG 62.508 72.222 0.00 0.00 0.00 4.63
1237 2823 2.520741 CTCCGGCTCCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
1238 2824 3.351885 ACTCCGGCTCCTCCTCCT 61.352 66.667 0.00 0.00 0.00 3.69
1274 2860 4.715130 TAGCCCCCACGCTCACCT 62.715 66.667 0.00 0.00 40.39 4.00
1297 2891 0.249489 CCCTCTAAATCGAGCACCCG 60.249 60.000 0.00 0.00 0.00 5.28
1324 2918 7.453126 ACCATGAATTAACCAAACTAATCACCA 59.547 33.333 0.00 0.00 0.00 4.17
1325 2919 7.836842 ACCATGAATTAACCAAACTAATCACC 58.163 34.615 0.00 0.00 0.00 4.02
1333 2927 7.319646 TGCAGATAACCATGAATTAACCAAAC 58.680 34.615 0.00 0.00 0.00 2.93
1334 2928 7.473735 TGCAGATAACCATGAATTAACCAAA 57.526 32.000 0.00 0.00 0.00 3.28
1341 2935 3.822735 CGGGATGCAGATAACCATGAATT 59.177 43.478 0.00 0.00 0.00 2.17
1342 2936 3.181440 ACGGGATGCAGATAACCATGAAT 60.181 43.478 0.00 0.00 0.00 2.57
1348 2946 0.600255 CGGACGGGATGCAGATAACC 60.600 60.000 0.00 0.00 0.00 2.85
1367 2965 6.581712 TGCTTCCAAATTATTATTGAAGCCC 58.418 36.000 21.81 7.22 42.91 5.19
1476 3076 8.333908 GTCTCAAAATCATTATCACTGCTACTG 58.666 37.037 0.00 0.00 0.00 2.74
1481 3081 9.443283 GTAATGTCTCAAAATCATTATCACTGC 57.557 33.333 0.00 0.00 36.74 4.40
1482 3082 9.941664 GGTAATGTCTCAAAATCATTATCACTG 57.058 33.333 0.00 0.00 36.07 3.66
1486 3086 9.125026 ACCTGGTAATGTCTCAAAATCATTATC 57.875 33.333 0.00 0.00 36.74 1.75
1490 3090 7.451255 TCAAACCTGGTAATGTCTCAAAATCAT 59.549 33.333 0.00 0.00 0.00 2.45
1491 3091 6.775142 TCAAACCTGGTAATGTCTCAAAATCA 59.225 34.615 0.00 0.00 0.00 2.57
1492 3092 7.214467 TCAAACCTGGTAATGTCTCAAAATC 57.786 36.000 0.00 0.00 0.00 2.17
1497 3097 7.990886 GGTATATTCAAACCTGGTAATGTCTCA 59.009 37.037 0.00 0.00 32.72 3.27
1583 3183 8.122952 GGACAACTACTGCATTACATTACATTC 58.877 37.037 0.00 0.00 0.00 2.67
1584 3184 7.609918 TGGACAACTACTGCATTACATTACATT 59.390 33.333 0.00 0.00 0.00 2.71
1585 3185 7.109501 TGGACAACTACTGCATTACATTACAT 58.890 34.615 0.00 0.00 0.00 2.29
1586 3186 6.468543 TGGACAACTACTGCATTACATTACA 58.531 36.000 0.00 0.00 0.00 2.41
1587 3187 6.816640 TCTGGACAACTACTGCATTACATTAC 59.183 38.462 0.00 0.00 0.00 1.89
1588 3188 6.941857 TCTGGACAACTACTGCATTACATTA 58.058 36.000 0.00 0.00 0.00 1.90
1593 3193 4.191544 GCATCTGGACAACTACTGCATTA 58.808 43.478 0.00 0.00 0.00 1.90
1609 3209 1.199327 CACAAAGACTGCAGGCATCTG 59.801 52.381 24.55 17.52 43.64 2.90
1616 3216 3.688272 CACAAGAACACAAAGACTGCAG 58.312 45.455 13.48 13.48 0.00 4.41
1629 3229 3.315191 TGCTTCCTACTTTGCACAAGAAC 59.685 43.478 13.35 0.00 0.00 3.01
1645 3245 2.045536 CACCTCTGCCCTGCTTCC 60.046 66.667 0.00 0.00 0.00 3.46
1692 3292 5.736951 TGCAAATATTACCAAAGCAGGTT 57.263 34.783 0.69 0.00 43.08 3.50
1965 3567 8.291191 TGATGAGAATGCAATATACACCAAAA 57.709 30.769 0.00 0.00 0.00 2.44
2134 3736 7.378181 CACTAACATAACCAAGGATTTGCTTT 58.622 34.615 0.00 0.00 32.79 3.51
2137 3739 5.102313 GCACTAACATAACCAAGGATTTGC 58.898 41.667 0.00 0.00 32.79 3.68
2138 3740 5.184864 TGGCACTAACATAACCAAGGATTTG 59.815 40.000 0.00 0.00 0.00 2.32
2139 3741 5.185056 GTGGCACTAACATAACCAAGGATTT 59.815 40.000 11.13 0.00 30.82 2.17
2264 3866 7.004555 TGGAAGTAGTGCTATGAGAGAAAAA 57.995 36.000 0.00 0.00 0.00 1.94
2265 3867 6.605471 TGGAAGTAGTGCTATGAGAGAAAA 57.395 37.500 0.00 0.00 0.00 2.29
2287 3890 4.329528 CCGTATGTTTGGGAAATGCAAATG 59.670 41.667 0.00 0.00 0.00 2.32
2508 4111 3.599343 TGAAGAAGATGGACATTGACCG 58.401 45.455 0.80 0.00 0.00 4.79
2521 4124 6.818142 TCGTTCTGCAATATGATTGAAGAAGA 59.182 34.615 18.81 15.42 42.88 2.87
2522 4125 7.008440 TCGTTCTGCAATATGATTGAAGAAG 57.992 36.000 18.81 13.95 42.88 2.85
2523 4126 6.983474 TCGTTCTGCAATATGATTGAAGAA 57.017 33.333 15.67 15.67 40.72 2.52
2564 4167 8.532819 ACTACTATTAACCAGAAAAGGAGACAG 58.467 37.037 0.00 0.00 0.00 3.51
2771 4393 0.796927 GACTAAACTCGCAACCCAGC 59.203 55.000 0.00 0.00 0.00 4.85
2776 4398 5.163884 GGAGTAAATGGACTAAACTCGCAAC 60.164 44.000 0.00 0.00 37.93 4.17
2777 4399 4.933400 GGAGTAAATGGACTAAACTCGCAA 59.067 41.667 0.00 0.00 37.93 4.85
2785 4407 9.268282 ACAAGAATCTAGGAGTAAATGGACTAA 57.732 33.333 0.00 0.00 0.00 2.24
2789 4411 7.400339 AGACACAAGAATCTAGGAGTAAATGGA 59.600 37.037 0.00 0.00 0.00 3.41
2799 4421 7.158021 AGAACAAAGAGACACAAGAATCTAGG 58.842 38.462 0.00 0.00 0.00 3.02
2808 4430 6.972328 GCAACAAATAGAACAAAGAGACACAA 59.028 34.615 0.00 0.00 0.00 3.33
2815 4437 8.081633 CCACATTAGCAACAAATAGAACAAAGA 58.918 33.333 0.00 0.00 0.00 2.52
2866 4488 1.905215 TCTTCTGCCCTCCTCTTTGAG 59.095 52.381 0.00 0.00 0.00 3.02
2883 4505 4.898861 GGTACTCTTCATCATCCTCCTCTT 59.101 45.833 0.00 0.00 0.00 2.85
2909 4531 3.269178 CAAGTGCATCTTCCTCCTCTTC 58.731 50.000 0.00 0.00 33.63 2.87
3023 4645 4.258543 CGGCTTAAGTTGGTTATTGAGGA 58.741 43.478 4.02 0.00 0.00 3.71
3027 4649 2.490115 TGCCGGCTTAAGTTGGTTATTG 59.510 45.455 29.70 0.00 0.00 1.90
3046 4668 5.747951 AGCAAGAAAAGAGTAGCATATGC 57.252 39.130 20.36 20.36 42.49 3.14
3140 4763 5.757808 GGTTCATTGCCACAATAAACTGTTT 59.242 36.000 10.98 10.98 0.00 2.83
3207 4830 5.279106 GCCATCAAATATATGCTTGCTTGGA 60.279 40.000 15.86 0.00 32.00 3.53
3260 4883 6.465084 AGTACAAGGAGTTCCACTCAAATAC 58.535 40.000 6.25 3.44 46.79 1.89
3633 5257 9.127277 ACTAGAAGTCCAGAACTACAGATAATC 57.873 37.037 0.00 0.00 37.17 1.75
3649 5273 8.794335 ATTAAGTTTCATGGAACTAGAAGTCC 57.206 34.615 19.88 0.59 38.86 3.85
3704 5328 9.799106 AAGACCCATCCATTATAAATAGTTCAG 57.201 33.333 0.00 0.00 0.00 3.02
3743 5367 9.944663 GCTTTTGACGATATGAAATAATTGGTA 57.055 29.630 0.00 0.00 29.06 3.25
3777 5401 1.002430 CAAGAACAGGGTCAGCTAGCA 59.998 52.381 18.83 0.00 0.00 3.49
3782 5406 4.911514 TTTTAACAAGAACAGGGTCAGC 57.088 40.909 0.00 0.00 0.00 4.26
3849 5473 9.158233 TGGTAGTTAACATATGCTAGACAAAAC 57.842 33.333 8.61 0.00 0.00 2.43
3933 5558 3.620488 CCAATTAAGCCCAGCTAGTTGA 58.380 45.455 8.34 0.00 38.25 3.18
3957 5582 3.243941 TGCCGTTATCATACAGCCGTATT 60.244 43.478 0.00 0.00 36.11 1.89
3972 5597 5.772672 AGCCAATATTCCATTAATGCCGTTA 59.227 36.000 10.11 0.00 0.00 3.18
4499 6129 7.503521 TTCATCAATAATAATGTAGCGCCAA 57.496 32.000 2.29 0.00 0.00 4.52
4544 6174 6.431543 TCATCGTCTTAGACAGAAGAGAGTTT 59.568 38.462 13.14 0.00 42.52 2.66
4661 6291 3.258872 AGTGGTTGCAATGCATGTTGTAT 59.741 39.130 9.39 0.00 38.76 2.29
4666 6296 1.330234 TCAGTGGTTGCAATGCATGT 58.670 45.000 9.39 0.00 38.76 3.21
4762 6397 3.577649 TTGAGTAGAGACCAAAGCTCG 57.422 47.619 0.00 0.00 37.46 5.03
5137 6803 5.741388 ACTGCATAGCTATGTTAAGCAAC 57.259 39.130 29.62 14.21 45.30 4.17
5152 6818 2.415168 GCAGCACTTTCGTAACTGCATA 59.585 45.455 8.32 0.00 45.09 3.14
5245 6911 3.119884 TCAGCATGAAAAACATACCTGCG 60.120 43.478 0.00 0.00 45.97 5.18
5428 7245 4.382291 TGCCATGTAAATCGGTATGGTAC 58.618 43.478 0.00 0.00 41.62 3.34
5437 7254 7.274468 GTGATATCTAGACTGCCATGTAAATCG 59.726 40.741 3.98 0.00 0.00 3.34
5444 7261 9.747293 CTAATATGTGATATCTAGACTGCCATG 57.253 37.037 3.98 0.00 0.00 3.66
5447 7264 8.526667 TCCTAATATGTGATATCTAGACTGCC 57.473 38.462 3.98 0.00 0.00 4.85
5462 7279 5.470098 GTGCGACCATGATTTCCTAATATGT 59.530 40.000 0.00 0.00 0.00 2.29
5538 7355 7.394359 AGTGATATGTCAAACAAAGCAAGGTAT 59.606 33.333 0.00 0.00 35.80 2.73
5626 7443 7.004555 TGTACTTCCATCTATTCGGCAATAT 57.995 36.000 0.00 0.00 0.00 1.28
5907 7747 2.148916 TTTGACCTATCCTATGCGCG 57.851 50.000 0.00 0.00 0.00 6.86
6071 7911 4.418392 CATCCAATGCAAGCTTCTTGTAC 58.582 43.478 0.00 0.00 0.00 2.90
6437 8312 6.640518 TCACCCATGTTACATTTAGAGAGAC 58.359 40.000 0.00 0.00 0.00 3.36
6438 8313 6.867519 TCACCCATGTTACATTTAGAGAGA 57.132 37.500 0.00 0.00 0.00 3.10
6533 8414 5.181009 TCAAGTGAGCAGATCATTACCTTG 58.819 41.667 9.44 9.44 40.92 3.61
6582 8463 7.551585 CAGAGTCAGTTGGTACTTGATAAGAT 58.448 38.462 0.00 0.00 30.26 2.40
6593 8474 3.181469 ACGAAAAGCAGAGTCAGTTGGTA 60.181 43.478 0.00 0.00 0.00 3.25
6615 8496 4.277423 CCTCGTTTTCCTCCTTTAAGCAAA 59.723 41.667 0.00 0.00 0.00 3.68
7215 9097 3.248024 ACCAGTACCTTCATCTTCACCA 58.752 45.455 0.00 0.00 0.00 4.17
7467 9349 5.047021 TGAAGTCTCTCTTAGTCCATGTTGG 60.047 44.000 0.00 0.00 36.18 3.77
7508 9390 7.100409 TGTCATTACGACCATATTTCTCACAA 58.900 34.615 0.00 0.00 44.71 3.33
7615 9497 4.074970 CAATTGCTTACCACTCAGTTCCT 58.925 43.478 0.00 0.00 0.00 3.36
7706 9588 4.142271 CCCAAGCAAAACAGTCAGTTGTTA 60.142 41.667 0.00 0.00 40.24 2.41
7713 9595 2.136298 TCACCCAAGCAAAACAGTCA 57.864 45.000 0.00 0.00 0.00 3.41
7728 9610 5.427036 TCGTTTAAAGTTGACCATTCACC 57.573 39.130 0.00 0.00 0.00 4.02
7733 9615 6.915843 GTGAACATTCGTTTAAAGTTGACCAT 59.084 34.615 0.00 0.00 34.75 3.55
7743 9625 4.710324 AGTCAGGGTGAACATTCGTTTAA 58.290 39.130 0.00 0.00 34.75 1.52
7748 9630 4.568359 CAGATTAGTCAGGGTGAACATTCG 59.432 45.833 0.00 0.00 0.00 3.34
7802 9684 8.682710 CCCCTTTCGATGTTTTTGATAATTCTA 58.317 33.333 0.00 0.00 0.00 2.10
7961 9843 1.600485 GGGCATACCATAAAACGGTCG 59.400 52.381 0.00 0.00 37.99 4.79
8001 9883 3.607422 TCATGTCACAAACTTGAAGCG 57.393 42.857 0.00 0.00 38.65 4.68
8132 10014 2.689983 ACTTCTTGCCTTCACAAACCAG 59.310 45.455 0.00 0.00 0.00 4.00
8147 10029 0.251077 CCAGCTCTTGGGCACTTCTT 60.251 55.000 0.00 0.00 43.75 2.52
8217 10099 0.737367 TGCCTTTCTCGCTCATCGTG 60.737 55.000 0.00 0.00 39.67 4.35
8231 10113 3.249189 TCCTTCCGTGCCTGCCTT 61.249 61.111 0.00 0.00 0.00 4.35
8246 10128 2.796557 ACCTTAGCAAGCCTTTTCTCC 58.203 47.619 0.00 0.00 0.00 3.71
8305 10193 4.054780 TCACCAGGATTAGTAATGTCGC 57.945 45.455 0.00 0.00 0.00 5.19
8320 10208 4.439700 GCATGACAAAGGAATGATCACCAG 60.440 45.833 0.00 0.00 0.00 4.00
8366 10254 3.953612 TCTGCTTTGTTGGTGTCATCTTT 59.046 39.130 0.00 0.00 0.00 2.52
8375 10263 2.549754 CGTCATCTTCTGCTTTGTTGGT 59.450 45.455 0.00 0.00 0.00 3.67
8392 10301 1.065600 GCTTGCTTTGTTGGCGTCA 59.934 52.632 0.00 0.00 0.00 4.35
8476 10385 0.307760 GGCCAGTGACGTTCAACAAG 59.692 55.000 0.00 0.00 0.00 3.16
8486 10395 3.319122 AGAACAAAATCAAGGCCAGTGAC 59.681 43.478 5.01 0.00 0.00 3.67
8494 10403 6.690530 TGCCATAAGAAGAACAAAATCAAGG 58.309 36.000 0.00 0.00 0.00 3.61
8505 10414 9.342308 CCAAGATTAGTAATGCCATAAGAAGAA 57.658 33.333 0.00 0.00 0.00 2.52
8506 10415 7.445402 GCCAAGATTAGTAATGCCATAAGAAGA 59.555 37.037 0.00 0.00 0.00 2.87
8507 10416 7.571983 CGCCAAGATTAGTAATGCCATAAGAAG 60.572 40.741 0.00 0.00 0.00 2.85
8513 10422 4.085357 TCGCCAAGATTAGTAATGCCAT 57.915 40.909 0.00 0.00 0.00 4.40
8516 10428 5.869753 ATGATCGCCAAGATTAGTAATGC 57.130 39.130 0.00 0.00 40.26 3.56
8595 10507 4.459089 GGAGCCGTCTCACCAGCC 62.459 72.222 0.00 0.00 41.13 4.85
8617 10529 1.821332 GCCGCTTCTTGGATGAGGG 60.821 63.158 5.65 0.00 29.98 4.30
8682 10594 4.141390 ACTGACCAACTGACAGAAAGGATT 60.141 41.667 10.08 0.00 35.85 3.01
8683 10595 3.392616 ACTGACCAACTGACAGAAAGGAT 59.607 43.478 10.08 0.00 35.85 3.24
8699 10611 3.426568 GCTTGCGCTGGACTGACC 61.427 66.667 9.73 0.00 39.54 4.02
8730 10648 1.222936 GGTCAGTAGGCAGCAGCAT 59.777 57.895 2.65 0.00 44.61 3.79
8740 10658 5.584253 TTTCAGCTTAGCTAGGTCAGTAG 57.416 43.478 6.35 0.00 36.40 2.57
8791 10709 1.153647 CGGATCACCTGCGCTTACA 60.154 57.895 9.73 0.00 0.00 2.41
8816 10734 2.839486 AACATCTCCTGACAAAGCGA 57.161 45.000 0.00 0.00 0.00 4.93
8818 10736 3.305608 CCCAAAACATCTCCTGACAAAGC 60.306 47.826 0.00 0.00 0.00 3.51
8819 10737 3.305608 GCCCAAAACATCTCCTGACAAAG 60.306 47.826 0.00 0.00 0.00 2.77
8820 10738 2.627699 GCCCAAAACATCTCCTGACAAA 59.372 45.455 0.00 0.00 0.00 2.83
8889 10807 5.880054 AACCTAACCAACAATTCATCGAG 57.120 39.130 0.00 0.00 0.00 4.04
8894 10812 7.504238 ACAGTGATTAACCTAACCAACAATTCA 59.496 33.333 0.00 0.00 0.00 2.57
8937 10857 2.476772 GTGGCGCCACAATACATGA 58.523 52.632 46.18 13.52 45.53 3.07
9014 10940 2.225019 GCATACCATCTTCATCCGCAAG 59.775 50.000 0.00 0.00 0.00 4.01
9020 10946 3.548818 GCCGTTTGCATACCATCTTCATC 60.549 47.826 1.46 0.00 40.77 2.92
9048 10974 9.815936 CAATGCATTTCCTTTCTAAAACAATTC 57.184 29.630 9.83 0.00 0.00 2.17
9052 10978 9.558396 AATTCAATGCATTTCCTTTCTAAAACA 57.442 25.926 9.83 0.00 0.00 2.83
9092 11018 6.814043 TGTGGAGAACTAGAGATGATTCATG 58.186 40.000 3.32 0.00 0.00 3.07
9105 11031 7.286087 TGTGTTAGAAACTACTGTGGAGAACTA 59.714 37.037 0.00 0.00 0.00 2.24
9110 11036 6.201044 CACTTGTGTTAGAAACTACTGTGGAG 59.799 42.308 0.00 0.00 0.00 3.86
9111 11037 6.046593 CACTTGTGTTAGAAACTACTGTGGA 58.953 40.000 0.00 0.00 0.00 4.02
9112 11038 5.236478 CCACTTGTGTTAGAAACTACTGTGG 59.764 44.000 0.00 0.00 35.17 4.17
9138 11064 1.229368 TGCTGGGTACAGGTGGCTA 60.229 57.895 0.00 0.00 45.04 3.93
9143 11069 1.073199 GCTTGTGCTGGGTACAGGT 59.927 57.895 0.00 0.00 45.04 4.00
9144 11070 3.987404 GCTTGTGCTGGGTACAGG 58.013 61.111 0.00 0.00 45.04 4.00
9158 11084 1.143684 TGGAAGGCTTCAAGTGAGCTT 59.856 47.619 27.17 0.00 34.82 3.74
9159 11085 0.767375 TGGAAGGCTTCAAGTGAGCT 59.233 50.000 27.17 0.00 0.00 4.09
9160 11086 1.471684 CATGGAAGGCTTCAAGTGAGC 59.528 52.381 27.17 9.67 0.00 4.26
9161 11087 2.787994 ACATGGAAGGCTTCAAGTGAG 58.212 47.619 27.17 13.12 0.00 3.51
9162 11088 2.957402 ACATGGAAGGCTTCAAGTGA 57.043 45.000 27.17 7.04 0.00 3.41
9163 11089 2.886523 TGAACATGGAAGGCTTCAAGTG 59.113 45.455 27.17 22.04 0.00 3.16
9164 11090 3.152341 CTGAACATGGAAGGCTTCAAGT 58.848 45.455 27.17 18.52 0.00 3.16
9165 11091 3.057736 CACTGAACATGGAAGGCTTCAAG 60.058 47.826 27.17 17.92 0.00 3.02
9166 11092 2.886523 CACTGAACATGGAAGGCTTCAA 59.113 45.455 27.17 18.35 0.00 2.69
9167 11093 2.507484 CACTGAACATGGAAGGCTTCA 58.493 47.619 27.17 14.47 0.00 3.02
9168 11094 1.200948 GCACTGAACATGGAAGGCTTC 59.799 52.381 18.98 18.98 0.00 3.86
9169 11095 1.251251 GCACTGAACATGGAAGGCTT 58.749 50.000 0.00 0.00 0.00 4.35
9170 11096 0.610232 GGCACTGAACATGGAAGGCT 60.610 55.000 0.00 0.00 0.00 4.58
9171 11097 1.885871 GGCACTGAACATGGAAGGC 59.114 57.895 0.00 0.00 0.00 4.35
9172 11098 1.308069 CCGGCACTGAACATGGAAGG 61.308 60.000 0.00 0.00 0.00 3.46
9173 11099 1.926511 GCCGGCACTGAACATGGAAG 61.927 60.000 24.80 0.00 0.00 3.46
9208 11134 2.324330 CGCCGGCACTGAACATTGA 61.324 57.895 28.98 0.00 0.00 2.57
9209 11135 2.176546 CGCCGGCACTGAACATTG 59.823 61.111 28.98 0.98 0.00 2.82
9210 11136 2.031919 TCGCCGGCACTGAACATT 59.968 55.556 28.98 0.00 0.00 2.71
9211 11137 2.434884 CTCGCCGGCACTGAACAT 60.435 61.111 28.98 0.00 0.00 2.71
9213 11139 4.681978 ACCTCGCCGGCACTGAAC 62.682 66.667 28.98 0.00 35.61 3.18
9214 11140 4.373116 GACCTCGCCGGCACTGAA 62.373 66.667 28.98 4.69 35.61 3.02
9238 11164 3.869272 GATCGCAACAGCAGCCGG 61.869 66.667 0.00 0.00 0.00 6.13
9249 11175 0.674581 CCAGCACTCCTTTGATCGCA 60.675 55.000 0.00 0.00 0.00 5.10
9292 11230 4.415150 CCCACAGCGCCATGACCT 62.415 66.667 2.29 0.00 0.00 3.85
9331 11298 9.914131 GCCTTCTTTTTAGAAAATGTAACTGAT 57.086 29.630 0.00 0.00 0.00 2.90
9347 11314 6.959639 TGTAAATGAGTCTGCCTTCTTTTT 57.040 33.333 0.00 0.00 0.00 1.94
9352 11319 5.241662 AGTCTTGTAAATGAGTCTGCCTTC 58.758 41.667 0.00 0.00 0.00 3.46
9380 11350 6.072230 GGAATGCCATTTAGAAGGAGCTATTC 60.072 42.308 3.45 3.45 0.00 1.75
9404 11374 4.035017 CGTTGAGCAAAACTGTTAAGTGG 58.965 43.478 0.00 0.00 36.51 4.00
9405 11375 4.035017 CCGTTGAGCAAAACTGTTAAGTG 58.965 43.478 0.00 0.00 36.51 3.16
9408 11378 4.877251 ACTACCGTTGAGCAAAACTGTTAA 59.123 37.500 0.00 0.00 31.17 2.01
9410 11380 3.064820 CACTACCGTTGAGCAAAACTGTT 59.935 43.478 4.41 0.00 31.17 3.16
9440 11410 1.139853 GGCAAGAGGACATCACCCTAG 59.860 57.143 0.00 0.00 33.36 3.02
9451 11421 3.524095 TGAAAAGAATGGGCAAGAGGA 57.476 42.857 0.00 0.00 0.00 3.71
9457 11427 7.438564 CATGATGATTATGAAAAGAATGGGCA 58.561 34.615 0.00 0.00 0.00 5.36
9464 11434 9.690913 AAAGAGTCCATGATGATTATGAAAAGA 57.309 29.630 0.00 0.00 0.00 2.52
9498 11468 5.920273 CCACACTACTCGCAATTTCAAAAAT 59.080 36.000 0.00 0.00 0.00 1.82
9509 11479 1.403647 CGAAATCCCACACTACTCGCA 60.404 52.381 0.00 0.00 0.00 5.10
9515 11485 2.823959 AGGGTACGAAATCCCACACTA 58.176 47.619 3.04 0.00 45.64 2.74
9528 11498 6.599437 CAGTGTTTATTTCTGAAAGGGTACG 58.401 40.000 8.95 0.00 0.00 3.67
9557 11529 1.996292 TATATGGAGAATCGCTGCGC 58.004 50.000 18.65 0.00 37.86 6.09
9568 11540 8.316946 ACAACCACATCATCTACATATATGGAG 58.683 37.037 17.75 17.75 40.20 3.86
9577 11549 3.197766 GGAGGACAACCACATCATCTACA 59.802 47.826 0.00 0.00 38.94 2.74
9584 11556 1.745489 GCGGGAGGACAACCACATC 60.745 63.158 0.00 0.00 38.94 3.06
9585 11557 2.063015 TTGCGGGAGGACAACCACAT 62.063 55.000 0.00 0.00 38.94 3.21
9586 11558 2.272230 TTTGCGGGAGGACAACCACA 62.272 55.000 0.00 0.00 38.94 4.17
9587 11559 1.104577 TTTTGCGGGAGGACAACCAC 61.105 55.000 0.00 0.00 38.94 4.16
9588 11560 0.395862 TTTTTGCGGGAGGACAACCA 60.396 50.000 0.00 0.00 38.94 3.67
9589 11561 2.421220 TTTTTGCGGGAGGACAACC 58.579 52.632 0.00 0.00 0.00 3.77
9617 11589 9.566432 AGAAAGACAATCACATCTTCTTTACTT 57.434 29.630 0.00 0.00 36.80 2.24
9623 11595 9.323985 GCTATTAGAAAGACAATCACATCTTCT 57.676 33.333 0.00 0.00 34.01 2.85
9624 11596 8.555361 GGCTATTAGAAAGACAATCACATCTTC 58.445 37.037 0.00 0.00 34.01 2.87
9625 11597 8.049117 TGGCTATTAGAAAGACAATCACATCTT 58.951 33.333 0.00 0.00 36.73 2.40
9626 11598 7.568349 TGGCTATTAGAAAGACAATCACATCT 58.432 34.615 0.00 0.00 0.00 2.90
9667 11639 7.321640 ATCTCCAGAAGAAGCTTAGCAGCAA 62.322 44.000 7.07 0.00 41.58 3.91
9695 11667 0.302288 TTCAACCGCGAAGAACAACG 59.698 50.000 8.23 0.00 0.00 4.10
9722 13582 7.037438 TGAGGAAATAGAGCATTTTTGCATTC 58.963 34.615 0.33 0.00 36.96 2.67
9745 13605 6.138967 TCAGATCCTCCTCACATAAGATTGA 58.861 40.000 0.00 0.00 0.00 2.57
9753 13613 3.136077 CACCAATCAGATCCTCCTCACAT 59.864 47.826 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.