Multiple sequence alignment - TraesCS3B01G083100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G083100 chr3B 100.000 5459 0 0 1 5459 52520161 52514703 0.000000e+00 10081
1 TraesCS3B01G083100 chr3B 96.475 1702 57 3 2186 3886 681350934 681352633 0.000000e+00 2808
2 TraesCS3B01G083100 chr3B 95.163 1261 61 0 3872 5132 681359615 681360875 0.000000e+00 1991
3 TraesCS3B01G083100 chr3B 95.796 1213 51 0 3920 5132 707597997 707596785 0.000000e+00 1958
4 TraesCS3B01G083100 chr3B 93.487 1044 48 5 3457 4480 340614538 340613495 0.000000e+00 1533
5 TraesCS3B01G083100 chr3B 92.224 1016 57 7 3454 4448 310608302 310609316 0.000000e+00 1419
6 TraesCS3B01G083100 chr3B 94.231 832 37 4 3 833 510236973 510237794 0.000000e+00 1260
7 TraesCS3B01G083100 chr3B 93.642 519 24 3 3454 3972 47160519 47161028 0.000000e+00 767
8 TraesCS3B01G083100 chr3B 96.173 392 15 0 2618 3009 47159561 47159952 4.610000e-180 641
9 TraesCS3B01G083100 chr3B 79.580 333 38 15 1875 2199 732435860 732435550 1.540000e-50 211
10 TraesCS3B01G083100 chr6B 97.207 1504 42 0 2965 4468 7341905 7340402 0.000000e+00 2545
11 TraesCS3B01G083100 chr6B 97.141 1504 43 0 2965 4468 7383325 7381822 0.000000e+00 2540
12 TraesCS3B01G083100 chr6B 96.210 1372 51 1 3761 5132 432007997 432009367 0.000000e+00 2244
13 TraesCS3B01G083100 chr6B 96.959 1118 34 0 1793 2910 432006874 432007991 0.000000e+00 1877
14 TraesCS3B01G083100 chr6B 96.406 779 28 0 3 781 432004173 432004951 0.000000e+00 1284
15 TraesCS3B01G083100 chr6B 93.163 863 53 5 876 1733 432005230 432006091 0.000000e+00 1262
16 TraesCS3B01G083100 chr6B 94.357 638 34 2 4498 5135 7340405 7339770 0.000000e+00 977
17 TraesCS3B01G083100 chr6B 89.853 611 51 6 156 758 391556393 391557000 0.000000e+00 774
18 TraesCS3B01G083100 chr2A 94.783 1495 76 2 3639 5133 27057151 27058643 0.000000e+00 2327
19 TraesCS3B01G083100 chr2A 93.744 1039 52 6 4 1030 38124766 38123729 0.000000e+00 1546
20 TraesCS3B01G083100 chr2A 95.084 773 38 0 2237 3009 475495001 475494229 0.000000e+00 1218
21 TraesCS3B01G083100 chr2A 88.934 732 64 11 156 872 545062398 545063127 0.000000e+00 887
22 TraesCS3B01G083100 chr7A 94.441 1493 70 1 3641 5133 594712220 594710741 0.000000e+00 2285
23 TraesCS3B01G083100 chr7A 94.253 435 24 1 2186 2620 661782452 661782885 0.000000e+00 664
24 TraesCS3B01G083100 chr7A 89.655 435 30 8 2186 2620 220922517 220922098 1.730000e-149 540
25 TraesCS3B01G083100 chr5A 95.036 1390 69 0 3748 5137 486467421 486466032 0.000000e+00 2185
26 TraesCS3B01G083100 chr5A 97.867 375 8 0 2636 3010 546947079 546947453 0.000000e+00 649
27 TraesCS3B01G083100 chr5A 93.364 437 26 2 2186 2620 381502338 381501903 1.280000e-180 643
28 TraesCS3B01G083100 chr5A 87.573 515 53 8 156 667 543166621 543167127 2.190000e-163 586
29 TraesCS3B01G083100 chr5A 86.142 534 62 9 156 685 517845198 517845723 2.850000e-157 566
30 TraesCS3B01G083100 chr5A 90.537 391 26 6 426 813 3478853 3478471 1.750000e-139 507
31 TraesCS3B01G083100 chr5A 88.988 336 28 3 1510 1845 600444128 600443802 1.830000e-109 407
32 TraesCS3B01G083100 chr5A 90.678 236 19 3 2324 2557 517689401 517689635 1.480000e-80 311
33 TraesCS3B01G083100 chr5A 87.732 269 28 3 2186 2454 623573402 623573139 5.310000e-80 309
34 TraesCS3B01G083100 chr5A 76.705 601 99 28 3 596 502846218 502846784 4.130000e-76 296
35 TraesCS3B01G083100 chr5A 93.671 158 8 2 1 158 193888087 193888242 9.140000e-58 235
36 TraesCS3B01G083100 chr5B 94.854 1302 55 6 3834 5134 61758108 61759398 0.000000e+00 2023
37 TraesCS3B01G083100 chr5B 93.598 328 20 1 1498 1825 590004050 590003724 6.360000e-134 488
38 TraesCS3B01G083100 chr5B 84.941 425 41 11 1078 1483 590004523 590004103 5.090000e-110 409
39 TraesCS3B01G083100 chr2B 96.125 1213 47 0 3920 5132 737566788 737568000 0.000000e+00 1980
40 TraesCS3B01G083100 chr2B 93.576 1043 53 8 3 1031 502006585 502007627 0.000000e+00 1543
41 TraesCS3B01G083100 chr2B 96.726 336 9 1 5124 5459 406496943 406497276 4.780000e-155 558
42 TraesCS3B01G083100 chr4A 93.558 1040 53 7 4 1031 422763148 422762111 0.000000e+00 1537
43 TraesCS3B01G083100 chr4A 90.374 561 46 6 317 872 306064649 306064092 0.000000e+00 730
44 TraesCS3B01G083100 chr4A 97.866 328 7 0 5132 5459 700323870 700323543 7.940000e-158 568
45 TraesCS3B01G083100 chr4A 86.278 532 60 10 160 685 404785341 404785865 2.850000e-157 566
46 TraesCS3B01G083100 chr4A 86.267 517 60 7 156 667 634155004 634155514 7.990000e-153 551
47 TraesCS3B01G083100 chr4A 91.341 358 27 4 457 811 536783 536427 2.290000e-133 486
48 TraesCS3B01G083100 chr4A 88.406 207 17 2 3 209 213627476 213627675 5.460000e-60 243
49 TraesCS3B01G083100 chr7B 89.933 1043 89 9 3 1031 725263354 725264394 0.000000e+00 1330
50 TraesCS3B01G083100 chr7B 97.859 327 7 0 5133 5459 211096631 211096957 2.850000e-157 566
51 TraesCS3B01G083100 chr7B 92.819 376 22 4 2186 2558 679350669 679351042 1.730000e-149 540
52 TraesCS3B01G083100 chr1A 96.119 773 30 0 2237 3009 424338539 424337767 0.000000e+00 1262
53 TraesCS3B01G083100 chr1A 94.253 435 24 1 2186 2620 526610636 526610203 0.000000e+00 664
54 TraesCS3B01G083100 chr1A 90.223 358 31 4 457 811 534688991 534688635 1.070000e-126 464
55 TraesCS3B01G083100 chr1A 94.690 226 12 0 2784 3009 419795975 419795750 8.700000e-93 351
56 TraesCS3B01G083100 chr1A 77.863 262 53 5 156 414 22171011 22170752 2.040000e-34 158
57 TraesCS3B01G083100 chr1A 77.824 239 50 2 169 404 18858976 18858738 1.580000e-30 145
58 TraesCS3B01G083100 chr5D 94.336 459 21 3 156 611 61847736 61848192 0.000000e+00 699
59 TraesCS3B01G083100 chr5D 97.561 328 8 0 5132 5459 378167664 378167337 3.690000e-156 562
60 TraesCS3B01G083100 chr5D 97.561 328 8 0 5132 5459 378174640 378174313 3.690000e-156 562
61 TraesCS3B01G083100 chr5D 93.784 370 18 3 156 522 419086542 419086175 7.990000e-153 551
62 TraesCS3B01G083100 chr5D 90.251 359 25 3 1496 1845 481431167 481430810 1.390000e-125 460
63 TraesCS3B01G083100 chr5D 86.118 425 39 9 1039 1456 481431656 481431245 1.800000e-119 440
64 TraesCS3B01G083100 chr5D 85.142 424 50 12 608 1031 61857467 61857877 6.540000e-114 422
65 TraesCS3B01G083100 chr5D 92.825 223 15 1 608 830 61849173 61849394 6.820000e-84 322
66 TraesCS3B01G083100 chr5D 88.889 216 19 4 2186 2400 499429781 499429570 1.510000e-65 261
67 TraesCS3B01G083100 chr5D 86.034 179 20 5 421 596 221497597 221497773 2.600000e-43 187
68 TraesCS3B01G083100 chr5D 85.083 181 22 5 424 601 238991 238813 4.340000e-41 180
69 TraesCS3B01G083100 chr5D 97.938 97 2 0 2461 2557 221499596 221499692 9.400000e-38 169
70 TraesCS3B01G083100 chr3A 88.014 584 51 8 464 1031 462633592 462634172 0.000000e+00 673
71 TraesCS3B01G083100 chr3A 94.131 426 24 1 2195 2620 31067174 31066750 0.000000e+00 647
72 TraesCS3B01G083100 chr3A 87.736 530 53 9 160 685 125409819 125409298 4.680000e-170 608
73 TraesCS3B01G083100 chr3A 87.767 515 54 6 156 667 45639188 45639696 1.310000e-165 593
74 TraesCS3B01G083100 chr3A 88.701 177 18 2 1863 2039 688682259 688682085 1.190000e-51 215
75 TraesCS3B01G083100 chr3A 89.809 157 14 2 2043 2199 688681965 688681811 3.330000e-47 200
76 TraesCS3B01G083100 chr2D 97.449 392 10 0 2618 3009 533819588 533819979 0.000000e+00 669
77 TraesCS3B01G083100 chr2D 76.602 671 114 29 5 668 353922850 353923484 4.080000e-86 329
78 TraesCS3B01G083100 chr2D 77.419 248 48 7 169 414 279109049 279108808 2.050000e-29 141
79 TraesCS3B01G083100 chr3D 87.586 580 64 8 171 744 568351416 568350839 0.000000e+00 665
80 TraesCS3B01G083100 chr3D 91.647 419 33 2 169 586 413350454 413350037 3.670000e-161 579
81 TraesCS3B01G083100 chr3D 88.337 463 37 8 585 1031 413349955 413349494 1.730000e-149 540
82 TraesCS3B01G083100 chr3D 86.009 436 47 11 255 686 92589707 92589282 6.450000e-124 455
83 TraesCS3B01G083100 chr1D 96.939 392 12 0 2618 3009 263327877 263328268 0.000000e+00 658
84 TraesCS3B01G083100 chr1D 93.548 155 10 0 4 158 41780079 41780233 1.180000e-56 231
85 TraesCS3B01G083100 chr1D 93.548 155 10 0 4 158 85855095 85855249 1.180000e-56 231
86 TraesCS3B01G083100 chr1D 93.548 155 10 0 4 158 266176108 266176262 1.180000e-56 231
87 TraesCS3B01G083100 chr1D 84.239 184 24 5 421 601 65739988 65740169 2.020000e-39 174
88 TraesCS3B01G083100 chr1D 95.918 98 4 0 2461 2558 65741936 65742033 5.660000e-35 159
89 TraesCS3B01G083100 chrUn 96.429 392 14 0 2618 3009 239204094 239204485 0.000000e+00 647
90 TraesCS3B01G083100 chrUn 97.561 328 8 0 5132 5459 365498089 365498416 3.690000e-156 562
91 TraesCS3B01G083100 chrUn 94.872 156 8 0 3 158 104822733 104822888 1.520000e-60 244
92 TraesCS3B01G083100 chrUn 92.949 156 11 0 3 158 411895611 411895766 1.530000e-55 228
93 TraesCS3B01G083100 chrUn 95.775 142 5 1 156 297 476550072 476550212 1.530000e-55 228
94 TraesCS3B01G083100 chrUn 92.903 155 11 0 4 158 142665542 142665388 5.500000e-55 226
95 TraesCS3B01G083100 chrUn 92.903 155 11 0 4 158 142666206 142666052 5.500000e-55 226
96 TraesCS3B01G083100 chrUn 92.357 157 10 2 3 158 22649435 22649590 7.120000e-54 222
97 TraesCS3B01G083100 chrUn 92.308 156 12 0 3 158 32311578 32311423 7.120000e-54 222
98 TraesCS3B01G083100 chrUn 92.308 156 12 0 3 158 355194522 355194367 7.120000e-54 222
99 TraesCS3B01G083100 chrUn 92.308 156 12 0 3 158 355238434 355238589 7.120000e-54 222
100 TraesCS3B01G083100 chrUn 92.308 156 12 0 3 158 396497808 396497653 7.120000e-54 222
101 TraesCS3B01G083100 chrUn 85.326 184 22 5 421 601 235244873 235245054 9.340000e-43 185
102 TraesCS3B01G083100 chrUn 84.783 184 23 5 421 601 24704592 24704773 4.340000e-41 180
103 TraesCS3B01G083100 chrUn 85.083 181 21 6 424 601 146573405 146573228 4.340000e-41 180
104 TraesCS3B01G083100 chrUn 88.406 138 6 4 426 563 476550212 476550339 2.040000e-34 158
105 TraesCS3B01G083100 chrUn 95.000 100 3 2 2461 2558 24706574 24706673 7.320000e-34 156
106 TraesCS3B01G083100 chrUn 84.564 149 18 5 456 601 168384882 168384736 5.700000e-30 143
107 TraesCS3B01G083100 chrUn 97.561 82 2 0 1687 1768 304779095 304779014 2.050000e-29 141
108 TraesCS3B01G083100 chrUn 91.919 99 8 0 2461 2559 200846697 200846795 7.370000e-29 139
109 TraesCS3B01G083100 chr6A 81.081 851 109 22 1038 1845 368498492 368497651 2.770000e-177 632
110 TraesCS3B01G083100 chr6A 86.328 512 59 8 160 667 426303006 426302502 1.030000e-151 547
111 TraesCS3B01G083100 chr6A 89.459 370 31 7 457 821 583051772 583051406 1.390000e-125 460
112 TraesCS3B01G083100 chr6A 91.089 202 18 0 2752 2953 542024055 542023854 1.940000e-69 274
113 TraesCS3B01G083100 chr6A 77.586 464 87 13 169 624 463740677 463741131 1.170000e-66 265
114 TraesCS3B01G083100 chr6A 78.680 394 59 16 3 389 99872410 99872035 7.070000e-59 239
115 TraesCS3B01G083100 chr6A 93.590 156 10 0 3 158 8550791 8550946 3.290000e-57 233
116 TraesCS3B01G083100 chr6A 93.038 158 11 0 1 158 390564273 390564430 1.180000e-56 231
117 TraesCS3B01G083100 chr4B 97.568 329 7 1 5132 5459 184679047 184678719 3.690000e-156 562
118 TraesCS3B01G083100 chr4B 97.561 328 8 0 5132 5459 260591466 260591139 3.690000e-156 562
119 TraesCS3B01G083100 chr4B 96.726 336 9 1 5124 5459 238043669 238043336 4.780000e-155 558
120 TraesCS3B01G083100 chr4B 86.375 389 31 13 426 813 667282304 667282671 6.580000e-109 405
121 TraesCS3B01G083100 chr4B 86.375 389 31 13 426 813 667297462 667297829 6.580000e-109 405
122 TraesCS3B01G083100 chr4B 83.578 341 33 9 426 766 341436185 341436502 1.150000e-76 298
123 TraesCS3B01G083100 chr4B 77.362 508 94 17 169 667 636655400 636654905 1.160000e-71 281
124 TraesCS3B01G083100 chr4B 78.880 393 77 4 169 558 186424110 186424499 1.510000e-65 261
125 TraesCS3B01G083100 chr4B 93.590 156 10 0 3 158 139871637 139871482 3.290000e-57 233
126 TraesCS3B01G083100 chr4B 95.775 142 5 1 156 297 667282164 667282304 1.530000e-55 228
127 TraesCS3B01G083100 chr4B 95.775 142 5 1 156 297 667297322 667297462 1.530000e-55 228
128 TraesCS3B01G083100 chr4B 80.080 251 48 2 156 404 1732112 1731862 9.340000e-43 185
129 TraesCS3B01G083100 chr1B 94.135 341 18 1 2220 2558 616649859 616650199 8.110000e-143 518
130 TraesCS3B01G083100 chr1B 91.061 358 28 4 457 811 672841258 672840902 1.060000e-131 481
131 TraesCS3B01G083100 chr1B 89.665 358 33 4 457 811 12120379 12120023 2.320000e-123 453
132 TraesCS3B01G083100 chr1B 90.855 339 29 2 2220 2558 619351037 619350701 2.320000e-123 453
133 TraesCS3B01G083100 chr1B 90.332 331 28 2 426 753 655552879 655553208 1.090000e-116 431
134 TraesCS3B01G083100 chr1B 76.804 582 99 23 4 580 52815928 52815378 1.490000e-75 294
135 TraesCS3B01G083100 chr7D 93.103 348 23 1 1498 1845 17139855 17139509 4.880000e-140 508
136 TraesCS3B01G083100 chr7D 85.946 185 19 7 421 601 173526301 173526482 2.010000e-44 191
137 TraesCS3B01G083100 chr7D 78.988 257 50 4 163 416 23397917 23398172 7.270000e-39 172
138 TraesCS3B01G083100 chr7D 79.747 237 44 4 170 403 575224666 575224901 9.400000e-38 169
139 TraesCS3B01G083100 chr7D 79.184 245 46 4 163 403 23396597 23396840 1.220000e-36 165
140 TraesCS3B01G083100 chr7D 97.561 82 2 0 1687 1768 494073833 494073914 2.050000e-29 141
141 TraesCS3B01G083100 chr6D 77.537 601 94 28 4 596 288780523 288781090 1.900000e-84 324
142 TraesCS3B01G083100 chr6D 91.304 207 18 0 2747 2953 284852563 284852769 3.220000e-72 283
143 TraesCS3B01G083100 chr6D 92.025 163 11 2 3 164 4874743 4874582 1.530000e-55 228
144 TraesCS3B01G083100 chr6D 92.949 156 11 0 3 158 150888881 150888726 1.530000e-55 228
145 TraesCS3B01G083100 chr6D 92.949 156 11 0 3 158 202938141 202937986 1.530000e-55 228
146 TraesCS3B01G083100 chr6D 92.903 155 11 0 4 158 221080144 221079990 5.500000e-55 226
147 TraesCS3B01G083100 chr6D 79.767 257 46 5 156 407 219295816 219295561 1.210000e-41 182
148 TraesCS3B01G083100 chr4D 93.548 155 9 1 4 158 12065117 12065270 4.250000e-56 230
149 TraesCS3B01G083100 chr4D 84.783 184 23 5 421 601 4184830 4185011 4.340000e-41 180
150 TraesCS3B01G083100 chr4D 96.939 98 3 0 2461 2558 4186792 4186889 1.220000e-36 165
151 TraesCS3B01G083100 chr4D 77.966 236 50 2 170 403 416246565 416246800 4.410000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G083100 chr3B 52514703 52520161 5458 True 10081.00 10081 100.0000 1 5459 1 chr3B.!!$R1 5458
1 TraesCS3B01G083100 chr3B 681350934 681352633 1699 False 2808.00 2808 96.4750 2186 3886 1 chr3B.!!$F3 1700
2 TraesCS3B01G083100 chr3B 681359615 681360875 1260 False 1991.00 1991 95.1630 3872 5132 1 chr3B.!!$F4 1260
3 TraesCS3B01G083100 chr3B 707596785 707597997 1212 True 1958.00 1958 95.7960 3920 5132 1 chr3B.!!$R3 1212
4 TraesCS3B01G083100 chr3B 340613495 340614538 1043 True 1533.00 1533 93.4870 3457 4480 1 chr3B.!!$R2 1023
5 TraesCS3B01G083100 chr3B 310608302 310609316 1014 False 1419.00 1419 92.2240 3454 4448 1 chr3B.!!$F1 994
6 TraesCS3B01G083100 chr3B 510236973 510237794 821 False 1260.00 1260 94.2310 3 833 1 chr3B.!!$F2 830
7 TraesCS3B01G083100 chr3B 47159561 47161028 1467 False 704.00 767 94.9075 2618 3972 2 chr3B.!!$F5 1354
8 TraesCS3B01G083100 chr6B 7381822 7383325 1503 True 2540.00 2540 97.1410 2965 4468 1 chr6B.!!$R1 1503
9 TraesCS3B01G083100 chr6B 7339770 7341905 2135 True 1761.00 2545 95.7820 2965 5135 2 chr6B.!!$R2 2170
10 TraesCS3B01G083100 chr6B 432004173 432009367 5194 False 1666.75 2244 95.6845 3 5132 4 chr6B.!!$F2 5129
11 TraesCS3B01G083100 chr6B 391556393 391557000 607 False 774.00 774 89.8530 156 758 1 chr6B.!!$F1 602
12 TraesCS3B01G083100 chr2A 27057151 27058643 1492 False 2327.00 2327 94.7830 3639 5133 1 chr2A.!!$F1 1494
13 TraesCS3B01G083100 chr2A 38123729 38124766 1037 True 1546.00 1546 93.7440 4 1030 1 chr2A.!!$R1 1026
14 TraesCS3B01G083100 chr2A 475494229 475495001 772 True 1218.00 1218 95.0840 2237 3009 1 chr2A.!!$R2 772
15 TraesCS3B01G083100 chr2A 545062398 545063127 729 False 887.00 887 88.9340 156 872 1 chr2A.!!$F2 716
16 TraesCS3B01G083100 chr7A 594710741 594712220 1479 True 2285.00 2285 94.4410 3641 5133 1 chr7A.!!$R2 1492
17 TraesCS3B01G083100 chr5A 486466032 486467421 1389 True 2185.00 2185 95.0360 3748 5137 1 chr5A.!!$R3 1389
18 TraesCS3B01G083100 chr5A 543166621 543167127 506 False 586.00 586 87.5730 156 667 1 chr5A.!!$F5 511
19 TraesCS3B01G083100 chr5A 517845198 517845723 525 False 566.00 566 86.1420 156 685 1 chr5A.!!$F4 529
20 TraesCS3B01G083100 chr5A 502846218 502846784 566 False 296.00 296 76.7050 3 596 1 chr5A.!!$F2 593
21 TraesCS3B01G083100 chr5B 61758108 61759398 1290 False 2023.00 2023 94.8540 3834 5134 1 chr5B.!!$F1 1300
22 TraesCS3B01G083100 chr5B 590003724 590004523 799 True 448.50 488 89.2695 1078 1825 2 chr5B.!!$R1 747
23 TraesCS3B01G083100 chr2B 737566788 737568000 1212 False 1980.00 1980 96.1250 3920 5132 1 chr2B.!!$F3 1212
24 TraesCS3B01G083100 chr2B 502006585 502007627 1042 False 1543.00 1543 93.5760 3 1031 1 chr2B.!!$F2 1028
25 TraesCS3B01G083100 chr4A 422762111 422763148 1037 True 1537.00 1537 93.5580 4 1031 1 chr4A.!!$R3 1027
26 TraesCS3B01G083100 chr4A 306064092 306064649 557 True 730.00 730 90.3740 317 872 1 chr4A.!!$R2 555
27 TraesCS3B01G083100 chr4A 404785341 404785865 524 False 566.00 566 86.2780 160 685 1 chr4A.!!$F2 525
28 TraesCS3B01G083100 chr4A 634155004 634155514 510 False 551.00 551 86.2670 156 667 1 chr4A.!!$F3 511
29 TraesCS3B01G083100 chr7B 725263354 725264394 1040 False 1330.00 1330 89.9330 3 1031 1 chr7B.!!$F3 1028
30 TraesCS3B01G083100 chr1A 424337767 424338539 772 True 1262.00 1262 96.1190 2237 3009 1 chr1A.!!$R4 772
31 TraesCS3B01G083100 chr5D 61847736 61849394 1658 False 510.50 699 93.5805 156 830 2 chr5D.!!$F2 674
32 TraesCS3B01G083100 chr5D 481430810 481431656 846 True 450.00 460 88.1845 1039 1845 2 chr5D.!!$R6 806
33 TraesCS3B01G083100 chr3A 462633592 462634172 580 False 673.00 673 88.0140 464 1031 1 chr3A.!!$F2 567
34 TraesCS3B01G083100 chr3A 125409298 125409819 521 True 608.00 608 87.7360 160 685 1 chr3A.!!$R2 525
35 TraesCS3B01G083100 chr3A 45639188 45639696 508 False 593.00 593 87.7670 156 667 1 chr3A.!!$F1 511
36 TraesCS3B01G083100 chr2D 353922850 353923484 634 False 329.00 329 76.6020 5 668 1 chr2D.!!$F1 663
37 TraesCS3B01G083100 chr3D 568350839 568351416 577 True 665.00 665 87.5860 171 744 1 chr3D.!!$R2 573
38 TraesCS3B01G083100 chr3D 413349494 413350454 960 True 559.50 579 89.9920 169 1031 2 chr3D.!!$R3 862
39 TraesCS3B01G083100 chrUn 142665388 142666206 818 True 226.00 226 92.9030 4 158 2 chrUn.!!$R7 154
40 TraesCS3B01G083100 chr6A 368497651 368498492 841 True 632.00 632 81.0810 1038 1845 1 chr6A.!!$R2 807
41 TraesCS3B01G083100 chr6A 426302502 426303006 504 True 547.00 547 86.3280 160 667 1 chr6A.!!$R3 507
42 TraesCS3B01G083100 chr4B 667282164 667282671 507 False 316.50 405 91.0750 156 813 2 chr4B.!!$F3 657
43 TraesCS3B01G083100 chr4B 667297322 667297829 507 False 316.50 405 91.0750 156 813 2 chr4B.!!$F4 657
44 TraesCS3B01G083100 chr1B 52815378 52815928 550 True 294.00 294 76.8040 4 580 1 chr1B.!!$R2 576
45 TraesCS3B01G083100 chr6D 288780523 288781090 567 False 324.00 324 77.5370 4 596 1 chr6D.!!$F2 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 1894 0.031111 AATCAGGACATCTCCCCCGA 60.031 55.000 0.00 0.0 37.25 5.14 F
1460 2946 0.039618 GTCTGCATTTCCCCCTTCCA 59.960 55.000 0.00 0.0 0.00 3.53 F
2507 4758 0.461961 TTTGTTTTGGAGCCCAACCG 59.538 50.000 6.19 0.0 43.82 4.44 F
2578 4829 1.201647 TGCCTCGCTCTACTGTTACAC 59.798 52.381 0.00 0.0 0.00 2.90 F
2712 4963 3.090790 TGCCTATGCTTGATTTCTGCAA 58.909 40.909 0.00 0.0 40.24 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2173 4424 0.819259 TCATAGGCAAGCATTCCCGC 60.819 55.000 0.00 0.0 0.00 6.13 R
2585 4836 1.081442 GCGTTGCAGTAACCCAAGC 60.081 57.895 0.00 0.0 35.84 4.01 R
3730 6322 3.068873 AGGTCAGCGCCAAAATTAAAACA 59.931 39.130 2.29 0.0 0.00 2.83 R
3838 6433 3.144506 ACTCAATCACCTTCACAGCAAG 58.855 45.455 0.00 0.0 0.00 4.01 R
4630 7265 3.128589 CACGTTTATTTCTGGGTCATGGG 59.871 47.826 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
265 434 4.810191 GTTAAAACCATGGGCATAACCA 57.190 40.909 18.09 0.00 46.24 3.67
635 1894 0.031111 AATCAGGACATCTCCCCCGA 60.031 55.000 0.00 0.00 37.25 5.14
653 1912 2.040178 CGAATCACCCTACCTTAGGCT 58.960 52.381 0.00 0.00 44.86 4.58
709 1972 2.122769 TTGACCCCCTCACCGTCA 60.123 61.111 0.00 0.00 34.80 4.35
767 2036 1.454847 CTCGTCCCCCTCTCTCCTG 60.455 68.421 0.00 0.00 0.00 3.86
803 2072 1.075600 CCCTCTCCCTCCCTCAGAC 60.076 68.421 0.00 0.00 0.00 3.51
872 2144 0.531090 GTAGACGTGGTGTTGTGGCA 60.531 55.000 0.00 0.00 0.00 4.92
874 2146 3.163110 GACGTGGTGTTGTGGCACG 62.163 63.158 13.77 0.00 43.79 5.34
878 2331 2.203153 GGTGTTGTGGCACGGACT 60.203 61.111 20.04 0.00 40.08 3.85
884 2337 2.280797 GTGGCACGGACTTGAGCA 60.281 61.111 0.00 0.00 0.00 4.26
936 2389 1.906105 TTCCTATTCCACGGCGCCTT 61.906 55.000 26.68 13.70 0.00 4.35
997 2453 1.825474 CTCCTCCTGGTCGTGTTGTAT 59.175 52.381 0.00 0.00 34.23 2.29
1011 2467 0.998928 TTGTATGCATGGTCCAGGGT 59.001 50.000 10.16 0.00 0.00 4.34
1131 2599 1.906824 GGACACGGTGAGGAGGACA 60.907 63.158 16.29 0.00 0.00 4.02
1154 2622 0.907704 ATGGGGTGCCTGTTCGACTA 60.908 55.000 0.00 0.00 0.00 2.59
1162 2630 0.242825 CCTGTTCGACTACTTCCGCA 59.757 55.000 0.00 0.00 0.00 5.69
1163 2631 1.336517 CCTGTTCGACTACTTCCGCAA 60.337 52.381 0.00 0.00 0.00 4.85
1164 2632 2.400399 CTGTTCGACTACTTCCGCAAA 58.600 47.619 0.00 0.00 0.00 3.68
1166 2634 2.034939 TGTTCGACTACTTCCGCAAAGA 59.965 45.455 3.02 0.00 38.44 2.52
1168 2636 1.610038 TCGACTACTTCCGCAAAGACA 59.390 47.619 3.02 0.00 38.44 3.41
1287 2766 2.510691 AACCCGTGCGCCTATTCG 60.511 61.111 4.18 1.87 0.00 3.34
1456 2938 0.332972 GAAGGTCTGCATTTCCCCCT 59.667 55.000 0.00 0.00 0.00 4.79
1458 2944 0.332972 AGGTCTGCATTTCCCCCTTC 59.667 55.000 0.00 0.00 0.00 3.46
1460 2946 0.039618 GTCTGCATTTCCCCCTTCCA 59.960 55.000 0.00 0.00 0.00 3.53
1466 2957 3.244840 TGCATTTCCCCCTTCCAATTTTG 60.245 43.478 0.00 0.00 0.00 2.44
1690 3219 1.980765 TCTTGCCACTTGAGACCTGAT 59.019 47.619 0.00 0.00 0.00 2.90
1780 3595 9.346005 TGTCTTTATATGCATGATGAGTTGATT 57.654 29.630 10.16 0.00 0.00 2.57
1871 4122 5.793026 TTCAGTTTGTTTGATGCCAAAAC 57.207 34.783 0.00 0.00 43.18 2.43
1935 4186 7.553881 TTGTTGCTATATTCTTTCTAGTGCC 57.446 36.000 0.00 0.00 0.00 5.01
1988 4239 4.065088 TGAGATTATAAATGTGGCGCTCC 58.935 43.478 7.64 0.00 0.00 4.70
2022 4273 8.512956 GCATTCTTTATTGTGCTCTCATGATAT 58.487 33.333 0.00 0.00 34.85 1.63
2052 4303 8.286097 GTGGAACAAGAGAAAGAGATTTTACTG 58.714 37.037 0.00 0.00 44.16 2.74
2146 4397 1.002087 AGACTCCGTGATTTTCCGCTT 59.998 47.619 0.00 0.00 0.00 4.68
2161 4412 2.670934 CTTGCTCCAAGCGCTGGT 60.671 61.111 12.58 0.00 46.26 4.00
2173 4424 0.802607 GCGCTGGTCGTTCCTCTTAG 60.803 60.000 0.00 0.00 41.07 2.18
2192 4443 0.819259 GCGGGAATGCTTGCCTATGA 60.819 55.000 0.00 0.00 39.30 2.15
2316 4567 6.710597 ATTACAGCAATCGTCCTAGTCTTA 57.289 37.500 0.00 0.00 0.00 2.10
2357 4608 2.346803 TGTTAGAACTTCGGATGCAGC 58.653 47.619 0.00 0.00 0.00 5.25
2407 4658 7.878547 TCCACAAGAAAATGTATATGCATCA 57.121 32.000 0.19 0.00 30.84 3.07
2409 4660 6.919662 CCACAAGAAAATGTATATGCATCACC 59.080 38.462 0.19 0.00 30.84 4.02
2507 4758 0.461961 TTTGTTTTGGAGCCCAACCG 59.538 50.000 6.19 0.00 43.82 4.44
2569 4820 3.002791 CAACTTGATTTGCCTCGCTCTA 58.997 45.455 0.00 0.00 0.00 2.43
2578 4829 1.201647 TGCCTCGCTCTACTGTTACAC 59.798 52.381 0.00 0.00 0.00 2.90
2585 4836 7.078851 CCTCGCTCTACTGTTACACTATATTG 58.921 42.308 0.00 0.00 0.00 1.90
2637 4888 7.701539 ACTACTGCATTTCATCAATTACCAA 57.298 32.000 0.00 0.00 0.00 3.67
2712 4963 3.090790 TGCCTATGCTTGATTTCTGCAA 58.909 40.909 0.00 0.00 40.24 4.08
2820 5071 7.027874 ACTTGTTTTGGTTATATCTCTCCCA 57.972 36.000 0.00 0.00 0.00 4.37
3209 5460 7.627585 AAATTTGTGTGATGATTCTGTTTCG 57.372 32.000 0.00 0.00 0.00 3.46
3449 6039 4.751600 TGTCTGCTTGTATATACTGCATGC 59.248 41.667 23.85 11.82 39.88 4.06
3451 6041 6.159293 GTCTGCTTGTATATACTGCATGCTA 58.841 40.000 23.85 3.94 40.05 3.49
3669 6261 6.623486 TGTCTTGTGTACTAGCGCTAAAATA 58.377 36.000 19.37 8.49 0.00 1.40
4105 6715 4.120792 TGCTCACTTTGCAAAAATGACA 57.879 36.364 17.63 16.72 37.51 3.58
4306 6917 4.349930 AGCCTGTTTTACTGTTTCCTCCTA 59.650 41.667 0.00 0.00 0.00 2.94
4520 7155 3.719268 ACCAGATGTACCAAATCTGCA 57.281 42.857 13.64 0.00 46.44 4.41
4630 7265 3.578716 TGATAGTACTGGGCCTGAATAGC 59.421 47.826 18.12 9.44 0.00 2.97
4862 7497 3.435026 GGCTAGGCCCATGTAGAAAATCA 60.435 47.826 4.61 0.00 44.06 2.57
4895 7543 2.229543 GCTGAATCTTGTGCCACATCAA 59.770 45.455 0.00 0.00 0.00 2.57
4939 7588 0.753867 GCCTAGGGAGGTTGCTAGTC 59.246 60.000 11.72 0.00 45.78 2.59
4948 7597 3.211045 GAGGTTGCTAGTCACCAAAACA 58.789 45.455 13.26 0.00 0.00 2.83
4952 7601 3.222173 TGCTAGTCACCAAAACACCAT 57.778 42.857 0.00 0.00 0.00 3.55
4972 7621 8.325787 ACACCATAGTAGACATATTTTGGTCAA 58.674 33.333 0.00 0.00 32.90 3.18
5045 7694 2.884639 GCCAGCTTTTGACCTTCTGTTA 59.115 45.455 0.00 0.00 0.00 2.41
5088 7737 6.511605 GCAAATGAAAAACCATGACCTTTCAC 60.512 38.462 14.37 3.63 39.78 3.18
5120 7769 3.880490 GTGGTGGTCACAAGTTCACATAA 59.120 43.478 3.40 0.00 45.39 1.90
5137 7786 8.721478 GTTCACATAATTCTTGTAGTGTGATGT 58.279 33.333 6.81 0.00 43.54 3.06
5138 7787 8.255394 TCACATAATTCTTGTAGTGTGATGTG 57.745 34.615 0.00 0.00 40.47 3.21
5139 7788 6.963242 CACATAATTCTTGTAGTGTGATGTGC 59.037 38.462 0.00 0.00 39.30 4.57
5140 7789 6.654582 ACATAATTCTTGTAGTGTGATGTGCA 59.345 34.615 0.00 0.00 0.00 4.57
5141 7790 7.337689 ACATAATTCTTGTAGTGTGATGTGCAT 59.662 33.333 0.00 0.00 0.00 3.96
5142 7791 6.579666 AATTCTTGTAGTGTGATGTGCATT 57.420 33.333 0.00 0.00 0.00 3.56
5143 7792 7.686438 AATTCTTGTAGTGTGATGTGCATTA 57.314 32.000 0.00 0.00 0.00 1.90
5144 7793 6.480524 TTCTTGTAGTGTGATGTGCATTAC 57.519 37.500 0.00 0.83 32.12 1.89
5145 7794 4.935205 TCTTGTAGTGTGATGTGCATTACC 59.065 41.667 0.00 0.00 30.96 2.85
5146 7795 3.258228 TGTAGTGTGATGTGCATTACCG 58.742 45.455 0.00 0.00 30.96 4.02
5147 7796 2.760634 AGTGTGATGTGCATTACCGA 57.239 45.000 0.00 0.00 0.00 4.69
5148 7797 2.621338 AGTGTGATGTGCATTACCGAG 58.379 47.619 0.00 0.00 0.00 4.63
5149 7798 2.233676 AGTGTGATGTGCATTACCGAGA 59.766 45.455 0.00 0.00 0.00 4.04
5150 7799 2.604914 GTGTGATGTGCATTACCGAGAG 59.395 50.000 0.00 0.00 0.00 3.20
5162 7811 4.932060 CGAGAGGGCCCAGAGATA 57.068 61.111 27.56 0.00 0.00 1.98
5163 7812 2.346597 CGAGAGGGCCCAGAGATAC 58.653 63.158 27.56 6.80 0.00 2.24
5164 7813 1.182385 CGAGAGGGCCCAGAGATACC 61.182 65.000 27.56 2.66 0.00 2.73
5165 7814 0.189822 GAGAGGGCCCAGAGATACCT 59.810 60.000 27.56 7.10 0.00 3.08
5166 7815 0.189822 AGAGGGCCCAGAGATACCTC 59.810 60.000 27.56 9.41 46.27 3.85
5168 7817 0.189822 AGGGCCCAGAGATACCTCTC 59.810 60.000 27.56 0.00 46.38 3.20
5169 7818 0.834261 GGGCCCAGAGATACCTCTCC 60.834 65.000 19.95 0.00 46.38 3.71
5170 7819 1.182385 GGCCCAGAGATACCTCTCCG 61.182 65.000 0.00 0.00 46.38 4.63
5171 7820 0.178987 GCCCAGAGATACCTCTCCGA 60.179 60.000 0.00 0.00 46.38 4.55
5172 7821 1.611519 CCCAGAGATACCTCTCCGAC 58.388 60.000 0.00 0.00 46.38 4.79
5173 7822 1.133761 CCCAGAGATACCTCTCCGACA 60.134 57.143 0.00 0.00 46.38 4.35
5174 7823 2.656002 CCAGAGATACCTCTCCGACAA 58.344 52.381 0.00 0.00 46.38 3.18
5175 7824 3.226777 CCAGAGATACCTCTCCGACAAT 58.773 50.000 0.00 0.00 46.38 2.71
5176 7825 3.254657 CCAGAGATACCTCTCCGACAATC 59.745 52.174 0.00 0.00 46.38 2.67
5177 7826 3.058570 CAGAGATACCTCTCCGACAATCG 60.059 52.174 0.00 0.00 46.38 3.34
5178 7827 4.057669 AGAGATACCTCTCCGACAATCGG 61.058 52.174 11.06 11.06 46.38 4.18
5189 7838 3.169207 CGACAATCGGAGTGACAAAAC 57.831 47.619 12.93 0.00 36.00 2.43
5190 7839 2.096417 CGACAATCGGAGTGACAAAACC 60.096 50.000 12.93 0.00 36.00 3.27
5191 7840 3.139077 GACAATCGGAGTGACAAAACCT 58.861 45.455 12.93 0.00 0.00 3.50
5192 7841 4.312443 GACAATCGGAGTGACAAAACCTA 58.688 43.478 12.93 0.00 0.00 3.08
5193 7842 4.710324 ACAATCGGAGTGACAAAACCTAA 58.290 39.130 12.93 0.00 0.00 2.69
5194 7843 5.313712 ACAATCGGAGTGACAAAACCTAAT 58.686 37.500 12.93 0.00 0.00 1.73
5195 7844 5.411669 ACAATCGGAGTGACAAAACCTAATC 59.588 40.000 12.93 0.00 0.00 1.75
5196 7845 4.884668 TCGGAGTGACAAAACCTAATCT 57.115 40.909 0.00 0.00 0.00 2.40
5197 7846 4.817517 TCGGAGTGACAAAACCTAATCTC 58.182 43.478 0.00 0.00 0.00 2.75
5198 7847 3.612860 CGGAGTGACAAAACCTAATCTCG 59.387 47.826 0.00 0.00 0.00 4.04
5199 7848 4.617530 CGGAGTGACAAAACCTAATCTCGA 60.618 45.833 0.00 0.00 0.00 4.04
5200 7849 5.235516 GGAGTGACAAAACCTAATCTCGAA 58.764 41.667 0.00 0.00 0.00 3.71
5201 7850 5.699458 GGAGTGACAAAACCTAATCTCGAAA 59.301 40.000 0.00 0.00 0.00 3.46
5202 7851 6.371825 GGAGTGACAAAACCTAATCTCGAAAT 59.628 38.462 0.00 0.00 0.00 2.17
5203 7852 7.548075 GGAGTGACAAAACCTAATCTCGAAATA 59.452 37.037 0.00 0.00 0.00 1.40
5204 7853 8.252964 AGTGACAAAACCTAATCTCGAAATAC 57.747 34.615 0.00 0.00 0.00 1.89
5205 7854 7.063074 AGTGACAAAACCTAATCTCGAAATACG 59.937 37.037 0.00 0.00 44.09 3.06
5207 7856 7.062605 TGACAAAACCTAATCTCGAAATACGAC 59.937 37.037 0.00 0.00 46.45 4.34
5208 7857 6.869913 ACAAAACCTAATCTCGAAATACGACA 59.130 34.615 0.00 0.00 46.45 4.35
5209 7858 7.385752 ACAAAACCTAATCTCGAAATACGACAA 59.614 33.333 0.00 0.00 46.45 3.18
5210 7859 6.882458 AACCTAATCTCGAAATACGACAAC 57.118 37.500 0.00 0.00 46.45 3.32
5211 7860 6.205101 ACCTAATCTCGAAATACGACAACT 57.795 37.500 0.00 0.00 46.45 3.16
5212 7861 6.264088 ACCTAATCTCGAAATACGACAACTC 58.736 40.000 0.00 0.00 46.45 3.01
5213 7862 6.127814 ACCTAATCTCGAAATACGACAACTCA 60.128 38.462 0.00 0.00 46.45 3.41
5214 7863 6.750501 CCTAATCTCGAAATACGACAACTCAA 59.249 38.462 0.00 0.00 46.45 3.02
5215 7864 6.390987 AATCTCGAAATACGACAACTCAAC 57.609 37.500 0.00 0.00 46.45 3.18
5216 7865 4.862350 TCTCGAAATACGACAACTCAACA 58.138 39.130 0.00 0.00 46.45 3.33
5217 7866 5.466819 TCTCGAAATACGACAACTCAACAT 58.533 37.500 0.00 0.00 46.45 2.71
5218 7867 5.344933 TCTCGAAATACGACAACTCAACATG 59.655 40.000 0.00 0.00 46.45 3.21
5219 7868 4.986034 TCGAAATACGACAACTCAACATGT 59.014 37.500 0.00 0.00 46.45 3.21
5220 7869 6.151004 TCGAAATACGACAACTCAACATGTA 58.849 36.000 0.00 0.00 46.45 2.29
5221 7870 6.088483 TCGAAATACGACAACTCAACATGTAC 59.912 38.462 0.00 0.00 46.45 2.90
5222 7871 6.476243 AAATACGACAACTCAACATGTACC 57.524 37.500 0.00 0.00 0.00 3.34
5223 7872 3.462483 ACGACAACTCAACATGTACCA 57.538 42.857 0.00 0.00 0.00 3.25
5224 7873 4.002906 ACGACAACTCAACATGTACCAT 57.997 40.909 0.00 0.00 0.00 3.55
5225 7874 4.385825 ACGACAACTCAACATGTACCATT 58.614 39.130 0.00 0.00 0.00 3.16
5226 7875 4.213270 ACGACAACTCAACATGTACCATTG 59.787 41.667 0.00 5.08 0.00 2.82
5227 7876 4.378356 CGACAACTCAACATGTACCATTGG 60.378 45.833 0.00 0.00 0.00 3.16
5228 7877 4.724399 ACAACTCAACATGTACCATTGGA 58.276 39.130 10.37 0.00 0.00 3.53
5229 7878 5.136828 ACAACTCAACATGTACCATTGGAA 58.863 37.500 10.37 0.00 0.00 3.53
5230 7879 5.596361 ACAACTCAACATGTACCATTGGAAA 59.404 36.000 10.37 0.00 0.00 3.13
5231 7880 5.705609 ACTCAACATGTACCATTGGAAAC 57.294 39.130 10.37 7.78 0.00 2.78
5232 7881 5.136828 ACTCAACATGTACCATTGGAAACA 58.863 37.500 10.37 13.21 39.83 2.83
5233 7882 5.009610 ACTCAACATGTACCATTGGAAACAC 59.990 40.000 10.37 2.45 42.67 3.32
5234 7883 4.279671 TCAACATGTACCATTGGAAACACC 59.720 41.667 10.37 0.00 42.67 4.16
5235 7884 4.112634 ACATGTACCATTGGAAACACCT 57.887 40.909 10.37 0.00 42.67 4.00
5236 7885 3.826157 ACATGTACCATTGGAAACACCTG 59.174 43.478 10.37 11.17 42.67 4.00
5237 7886 3.586470 TGTACCATTGGAAACACCTGT 57.414 42.857 10.37 0.00 42.67 4.00
5238 7887 4.708576 TGTACCATTGGAAACACCTGTA 57.291 40.909 10.37 0.00 42.67 2.74
5239 7888 4.647611 TGTACCATTGGAAACACCTGTAG 58.352 43.478 10.37 0.00 42.67 2.74
5240 7889 4.348461 TGTACCATTGGAAACACCTGTAGA 59.652 41.667 10.37 0.00 42.67 2.59
5241 7890 4.021102 ACCATTGGAAACACCTGTAGAG 57.979 45.455 10.37 0.00 42.67 2.43
5242 7891 2.749621 CCATTGGAAACACCTGTAGAGC 59.250 50.000 0.00 0.00 42.67 4.09
5243 7892 3.560025 CCATTGGAAACACCTGTAGAGCT 60.560 47.826 0.00 0.00 42.67 4.09
5244 7893 3.402628 TTGGAAACACCTGTAGAGCTC 57.597 47.619 5.27 5.27 42.67 4.09
5245 7894 1.623811 TGGAAACACCTGTAGAGCTCC 59.376 52.381 10.93 0.00 39.86 4.70
5246 7895 1.903183 GGAAACACCTGTAGAGCTCCT 59.097 52.381 10.93 0.10 35.41 3.69
5247 7896 2.303311 GGAAACACCTGTAGAGCTCCTT 59.697 50.000 10.93 0.00 35.41 3.36
5248 7897 3.244596 GGAAACACCTGTAGAGCTCCTTT 60.245 47.826 10.93 0.00 35.41 3.11
5249 7898 4.020485 GGAAACACCTGTAGAGCTCCTTTA 60.020 45.833 10.93 0.00 35.41 1.85
5250 7899 5.338463 GGAAACACCTGTAGAGCTCCTTTAT 60.338 44.000 10.93 0.00 35.41 1.40
5251 7900 6.127140 GGAAACACCTGTAGAGCTCCTTTATA 60.127 42.308 10.93 0.00 35.41 0.98
5252 7901 6.869206 AACACCTGTAGAGCTCCTTTATAA 57.131 37.500 10.93 0.00 0.00 0.98
5253 7902 7.439108 AACACCTGTAGAGCTCCTTTATAAT 57.561 36.000 10.93 0.00 0.00 1.28
5254 7903 7.056844 ACACCTGTAGAGCTCCTTTATAATC 57.943 40.000 10.93 0.00 0.00 1.75
5255 7904 6.611642 ACACCTGTAGAGCTCCTTTATAATCA 59.388 38.462 10.93 0.00 0.00 2.57
5256 7905 6.926272 CACCTGTAGAGCTCCTTTATAATCAC 59.074 42.308 10.93 0.00 0.00 3.06
5257 7906 6.042208 ACCTGTAGAGCTCCTTTATAATCACC 59.958 42.308 10.93 0.00 0.00 4.02
5258 7907 6.420913 TGTAGAGCTCCTTTATAATCACCC 57.579 41.667 10.93 0.00 0.00 4.61
5259 7908 5.903010 TGTAGAGCTCCTTTATAATCACCCA 59.097 40.000 10.93 0.00 0.00 4.51
5260 7909 5.559148 AGAGCTCCTTTATAATCACCCAG 57.441 43.478 10.93 0.00 0.00 4.45
5261 7910 4.971924 AGAGCTCCTTTATAATCACCCAGT 59.028 41.667 10.93 0.00 0.00 4.00
5262 7911 5.430089 AGAGCTCCTTTATAATCACCCAGTT 59.570 40.000 10.93 0.00 0.00 3.16
5263 7912 6.615726 AGAGCTCCTTTATAATCACCCAGTTA 59.384 38.462 10.93 0.00 0.00 2.24
5264 7913 6.592870 AGCTCCTTTATAATCACCCAGTTAC 58.407 40.000 0.00 0.00 0.00 2.50
5265 7914 5.465724 GCTCCTTTATAATCACCCAGTTACG 59.534 44.000 0.00 0.00 0.00 3.18
5266 7915 6.549433 TCCTTTATAATCACCCAGTTACGT 57.451 37.500 0.00 0.00 0.00 3.57
5267 7916 6.949715 TCCTTTATAATCACCCAGTTACGTT 58.050 36.000 0.00 0.00 0.00 3.99
5268 7917 6.819649 TCCTTTATAATCACCCAGTTACGTTG 59.180 38.462 0.00 0.00 0.00 4.10
5269 7918 6.596497 CCTTTATAATCACCCAGTTACGTTGT 59.404 38.462 0.00 0.00 0.00 3.32
5270 7919 6.971527 TTATAATCACCCAGTTACGTTGTG 57.028 37.500 0.00 0.00 0.00 3.33
5271 7920 3.478857 AATCACCCAGTTACGTTGTGA 57.521 42.857 0.00 6.41 39.95 3.58
5272 7921 2.228138 TCACCCAGTTACGTTGTGAC 57.772 50.000 0.00 0.00 31.45 3.67
5282 7931 3.721466 CGTTGTGACGTTTGGTAGC 57.279 52.632 0.00 0.00 44.08 3.58
5283 7932 0.931702 CGTTGTGACGTTTGGTAGCA 59.068 50.000 0.00 0.00 44.08 3.49
5284 7933 1.332552 CGTTGTGACGTTTGGTAGCAC 60.333 52.381 0.00 0.00 44.08 4.40
5285 7934 1.666700 GTTGTGACGTTTGGTAGCACA 59.333 47.619 0.00 0.34 37.66 4.57
5286 7935 1.292061 TGTGACGTTTGGTAGCACAC 58.708 50.000 1.04 1.04 34.85 3.82
5287 7936 1.292061 GTGACGTTTGGTAGCACACA 58.708 50.000 11.43 0.00 0.00 3.72
5288 7937 1.666700 GTGACGTTTGGTAGCACACAA 59.333 47.619 11.43 0.00 0.00 3.33
5289 7938 2.096174 GTGACGTTTGGTAGCACACAAA 59.904 45.455 11.43 0.00 34.48 2.83
5290 7939 2.353269 TGACGTTTGGTAGCACACAAAG 59.647 45.455 11.43 1.31 37.27 2.77
5291 7940 2.353579 GACGTTTGGTAGCACACAAAGT 59.646 45.455 11.43 4.36 37.27 2.66
5294 7943 3.426963 CGTTTGGTAGCACACAAAGTGTT 60.427 43.478 11.43 0.00 45.08 3.32
5295 7944 4.102649 GTTTGGTAGCACACAAAGTGTTC 58.897 43.478 6.34 0.00 45.08 3.18
5296 7945 2.294074 TGGTAGCACACAAAGTGTTCC 58.706 47.619 0.00 2.65 45.08 3.62
5297 7946 2.092646 TGGTAGCACACAAAGTGTTCCT 60.093 45.455 0.00 3.24 45.08 3.36
5298 7947 2.548480 GGTAGCACACAAAGTGTTCCTC 59.452 50.000 0.00 0.00 45.08 3.71
5299 7948 1.680338 AGCACACAAAGTGTTCCTCC 58.320 50.000 0.00 0.00 45.08 4.30
5300 7949 0.307760 GCACACAAAGTGTTCCTCCG 59.692 55.000 0.00 0.00 45.08 4.63
5301 7950 0.944386 CACACAAAGTGTTCCTCCGG 59.056 55.000 0.00 0.00 45.08 5.14
5302 7951 0.544697 ACACAAAGTGTTCCTCCGGT 59.455 50.000 0.00 0.00 45.08 5.28
5303 7952 1.764134 ACACAAAGTGTTCCTCCGGTA 59.236 47.619 0.00 0.00 45.08 4.02
5304 7953 2.171027 ACACAAAGTGTTCCTCCGGTAA 59.829 45.455 0.00 0.00 45.08 2.85
5305 7954 3.207778 CACAAAGTGTTCCTCCGGTAAA 58.792 45.455 0.00 0.00 0.00 2.01
5306 7955 3.002965 CACAAAGTGTTCCTCCGGTAAAC 59.997 47.826 0.00 5.38 0.00 2.01
5307 7956 2.159327 AAGTGTTCCTCCGGTAAACG 57.841 50.000 0.00 0.00 43.80 3.60
5325 7974 3.845781 ACGGGAGTTGCATAATCTCAT 57.154 42.857 0.00 0.00 43.33 2.90
5326 7975 4.955811 ACGGGAGTTGCATAATCTCATA 57.044 40.909 0.00 0.00 43.33 2.15
5327 7976 4.887748 ACGGGAGTTGCATAATCTCATAG 58.112 43.478 0.00 0.00 43.33 2.23
5328 7977 4.345257 ACGGGAGTTGCATAATCTCATAGT 59.655 41.667 0.00 0.00 43.33 2.12
5329 7978 5.163301 ACGGGAGTTGCATAATCTCATAGTT 60.163 40.000 0.00 0.00 43.33 2.24
5330 7979 5.178252 CGGGAGTTGCATAATCTCATAGTTG 59.822 44.000 0.00 0.00 0.00 3.16
5331 7980 6.058183 GGGAGTTGCATAATCTCATAGTTGT 58.942 40.000 0.00 0.00 0.00 3.32
5332 7981 7.217200 GGGAGTTGCATAATCTCATAGTTGTA 58.783 38.462 0.00 0.00 0.00 2.41
5333 7982 7.386299 GGGAGTTGCATAATCTCATAGTTGTAG 59.614 40.741 0.00 0.00 0.00 2.74
5334 7983 7.386299 GGAGTTGCATAATCTCATAGTTGTAGG 59.614 40.741 0.00 0.00 0.00 3.18
5335 7984 8.023021 AGTTGCATAATCTCATAGTTGTAGGA 57.977 34.615 0.00 0.00 0.00 2.94
5336 7985 8.486210 AGTTGCATAATCTCATAGTTGTAGGAA 58.514 33.333 0.00 0.00 0.00 3.36
5337 7986 8.552034 GTTGCATAATCTCATAGTTGTAGGAAC 58.448 37.037 0.00 0.00 0.00 3.62
5338 7987 7.791029 TGCATAATCTCATAGTTGTAGGAACA 58.209 34.615 0.00 0.00 0.00 3.18
5339 7988 8.432013 TGCATAATCTCATAGTTGTAGGAACAT 58.568 33.333 0.00 0.00 34.97 2.71
5340 7989 8.715998 GCATAATCTCATAGTTGTAGGAACATG 58.284 37.037 0.00 0.00 34.97 3.21
5341 7990 9.770097 CATAATCTCATAGTTGTAGGAACATGT 57.230 33.333 0.00 0.00 34.97 3.21
5351 8000 8.948631 AGTTGTAGGAACATGTATAAGTCATG 57.051 34.615 0.00 4.66 45.41 3.07
5352 8001 8.758829 AGTTGTAGGAACATGTATAAGTCATGA 58.241 33.333 0.00 0.00 43.47 3.07
5353 8002 9.378551 GTTGTAGGAACATGTATAAGTCATGAA 57.621 33.333 0.00 0.00 43.47 2.57
5354 8003 9.599866 TTGTAGGAACATGTATAAGTCATGAAG 57.400 33.333 0.00 0.00 43.47 3.02
5355 8004 8.977412 TGTAGGAACATGTATAAGTCATGAAGA 58.023 33.333 0.00 0.00 43.47 2.87
5356 8005 9.817809 GTAGGAACATGTATAAGTCATGAAGAA 57.182 33.333 0.00 0.00 43.47 2.52
5358 8007 9.388506 AGGAACATGTATAAGTCATGAAGAAAG 57.611 33.333 0.00 0.00 43.47 2.62
5359 8008 8.125448 GGAACATGTATAAGTCATGAAGAAAGC 58.875 37.037 0.00 0.00 43.47 3.51
5360 8009 8.565896 AACATGTATAAGTCATGAAGAAAGCA 57.434 30.769 0.00 0.00 43.47 3.91
5361 8010 8.565896 ACATGTATAAGTCATGAAGAAAGCAA 57.434 30.769 11.92 0.00 43.47 3.91
5362 8011 9.182214 ACATGTATAAGTCATGAAGAAAGCAAT 57.818 29.630 11.92 0.00 43.47 3.56
5365 8014 8.830580 TGTATAAGTCATGAAGAAAGCAATAGC 58.169 33.333 0.00 0.00 42.56 2.97
5366 8015 7.870509 ATAAGTCATGAAGAAAGCAATAGCA 57.129 32.000 0.00 0.00 45.49 3.49
5367 8016 6.579666 AAGTCATGAAGAAAGCAATAGCAA 57.420 33.333 0.00 0.00 45.49 3.91
5368 8017 6.579666 AGTCATGAAGAAAGCAATAGCAAA 57.420 33.333 0.00 0.00 45.49 3.68
5369 8018 6.985117 AGTCATGAAGAAAGCAATAGCAAAA 58.015 32.000 0.00 0.00 45.49 2.44
5370 8019 7.609056 AGTCATGAAGAAAGCAATAGCAAAAT 58.391 30.769 0.00 0.00 45.49 1.82
5371 8020 8.742777 AGTCATGAAGAAAGCAATAGCAAAATA 58.257 29.630 0.00 0.00 45.49 1.40
5372 8021 8.801913 GTCATGAAGAAAGCAATAGCAAAATAC 58.198 33.333 0.00 0.00 45.49 1.89
5373 8022 8.742777 TCATGAAGAAAGCAATAGCAAAATACT 58.257 29.630 0.00 0.00 45.49 2.12
5388 8037 8.915057 AGCAAAATACTATATGATCAAGTGCT 57.085 30.769 0.00 0.98 0.00 4.40
5397 8046 7.810282 ACTATATGATCAAGTGCTAAGCTAACG 59.190 37.037 0.00 0.00 0.00 3.18
5398 8047 3.521560 TGATCAAGTGCTAAGCTAACGG 58.478 45.455 0.00 0.00 0.00 4.44
5399 8048 3.194755 TGATCAAGTGCTAAGCTAACGGA 59.805 43.478 0.00 0.00 0.00 4.69
5400 8049 3.671008 TCAAGTGCTAAGCTAACGGAA 57.329 42.857 0.00 0.00 0.00 4.30
5401 8050 4.202245 TCAAGTGCTAAGCTAACGGAAT 57.798 40.909 0.00 0.00 0.00 3.01
5402 8051 3.932710 TCAAGTGCTAAGCTAACGGAATG 59.067 43.478 0.00 0.00 0.00 2.67
5403 8052 2.906354 AGTGCTAAGCTAACGGAATGG 58.094 47.619 0.00 0.00 0.00 3.16
5404 8053 1.940613 GTGCTAAGCTAACGGAATGGG 59.059 52.381 0.00 0.00 0.00 4.00
5405 8054 1.557832 TGCTAAGCTAACGGAATGGGT 59.442 47.619 0.00 0.00 0.00 4.51
5406 8055 2.210961 GCTAAGCTAACGGAATGGGTC 58.789 52.381 0.00 0.00 0.00 4.46
5407 8056 2.419574 GCTAAGCTAACGGAATGGGTCA 60.420 50.000 0.00 0.00 0.00 4.02
5408 8057 2.871096 AAGCTAACGGAATGGGTCAA 57.129 45.000 0.00 0.00 0.00 3.18
5409 8058 2.403252 AGCTAACGGAATGGGTCAAG 57.597 50.000 0.00 0.00 0.00 3.02
5410 8059 1.628846 AGCTAACGGAATGGGTCAAGT 59.371 47.619 0.00 0.00 0.00 3.16
5411 8060 2.007608 GCTAACGGAATGGGTCAAGTC 58.992 52.381 0.00 0.00 0.00 3.01
5412 8061 2.614481 GCTAACGGAATGGGTCAAGTCA 60.614 50.000 0.00 0.00 0.00 3.41
5413 8062 2.649531 AACGGAATGGGTCAAGTCAA 57.350 45.000 0.00 0.00 0.00 3.18
5414 8063 2.879103 ACGGAATGGGTCAAGTCAAT 57.121 45.000 0.00 0.00 0.00 2.57
5415 8064 2.711542 ACGGAATGGGTCAAGTCAATC 58.288 47.619 0.00 0.00 0.00 2.67
5416 8065 2.039746 ACGGAATGGGTCAAGTCAATCA 59.960 45.455 0.00 0.00 0.00 2.57
5417 8066 2.420022 CGGAATGGGTCAAGTCAATCAC 59.580 50.000 0.00 0.00 0.00 3.06
5418 8067 3.420893 GGAATGGGTCAAGTCAATCACA 58.579 45.455 0.00 0.00 0.00 3.58
5419 8068 4.019174 GGAATGGGTCAAGTCAATCACAT 58.981 43.478 0.00 0.00 0.00 3.21
5420 8069 4.096984 GGAATGGGTCAAGTCAATCACATC 59.903 45.833 0.00 0.00 0.00 3.06
5421 8070 3.786368 TGGGTCAAGTCAATCACATCA 57.214 42.857 0.00 0.00 0.00 3.07
5422 8071 4.305539 TGGGTCAAGTCAATCACATCAT 57.694 40.909 0.00 0.00 0.00 2.45
5423 8072 4.665451 TGGGTCAAGTCAATCACATCATT 58.335 39.130 0.00 0.00 0.00 2.57
5424 8073 4.701651 TGGGTCAAGTCAATCACATCATTC 59.298 41.667 0.00 0.00 0.00 2.67
5425 8074 4.946157 GGGTCAAGTCAATCACATCATTCT 59.054 41.667 0.00 0.00 0.00 2.40
5426 8075 5.065731 GGGTCAAGTCAATCACATCATTCTC 59.934 44.000 0.00 0.00 0.00 2.87
5427 8076 5.065731 GGTCAAGTCAATCACATCATTCTCC 59.934 44.000 0.00 0.00 0.00 3.71
5428 8077 5.879223 GTCAAGTCAATCACATCATTCTCCT 59.121 40.000 0.00 0.00 0.00 3.69
5429 8078 7.044181 GTCAAGTCAATCACATCATTCTCCTA 58.956 38.462 0.00 0.00 0.00 2.94
5430 8079 7.550551 GTCAAGTCAATCACATCATTCTCCTAA 59.449 37.037 0.00 0.00 0.00 2.69
5431 8080 8.270030 TCAAGTCAATCACATCATTCTCCTAAT 58.730 33.333 0.00 0.00 0.00 1.73
5432 8081 8.343366 CAAGTCAATCACATCATTCTCCTAATG 58.657 37.037 0.00 0.00 0.00 1.90
5433 8082 7.799081 AGTCAATCACATCATTCTCCTAATGA 58.201 34.615 3.13 3.13 40.50 2.57
5434 8083 8.438373 AGTCAATCACATCATTCTCCTAATGAT 58.562 33.333 7.28 7.28 45.40 2.45
5442 8091 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
5443 8092 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
5444 8093 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
5445 8094 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
5446 8095 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
5447 8096 5.600898 TCTCCTAATGATGTGATCCCGTTAA 59.399 40.000 0.00 0.00 0.00 2.01
5448 8097 6.270000 TCTCCTAATGATGTGATCCCGTTAAT 59.730 38.462 0.00 0.00 0.00 1.40
5449 8098 6.464222 TCCTAATGATGTGATCCCGTTAATC 58.536 40.000 0.00 0.00 0.00 1.75
5450 8099 6.042666 TCCTAATGATGTGATCCCGTTAATCA 59.957 38.462 0.00 0.00 0.00 2.57
5451 8100 6.710295 CCTAATGATGTGATCCCGTTAATCAA 59.290 38.462 0.00 0.00 35.04 2.57
5452 8101 7.228507 CCTAATGATGTGATCCCGTTAATCAAA 59.771 37.037 0.00 0.00 35.04 2.69
5453 8102 7.587037 AATGATGTGATCCCGTTAATCAAAT 57.413 32.000 0.00 0.00 34.46 2.32
5454 8103 6.375945 TGATGTGATCCCGTTAATCAAATG 57.624 37.500 0.00 0.00 32.39 2.32
5455 8104 6.118852 TGATGTGATCCCGTTAATCAAATGA 58.881 36.000 0.00 0.00 32.39 2.57
5456 8105 5.811399 TGTGATCCCGTTAATCAAATGAC 57.189 39.130 0.00 0.00 35.04 3.06
5457 8106 5.249420 TGTGATCCCGTTAATCAAATGACA 58.751 37.500 0.00 0.00 35.04 3.58
5458 8107 5.707764 TGTGATCCCGTTAATCAAATGACAA 59.292 36.000 0.00 0.00 35.04 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
265 434 1.895020 TTCCACCCGCAGCTACGAAT 61.895 55.000 8.21 0.00 34.06 3.34
653 1912 1.600957 GACGATCGGACGGTTCAGATA 59.399 52.381 20.98 0.00 36.86 1.98
709 1972 2.778850 TGTGTTAGGGTTAGTTGGGTGT 59.221 45.455 0.00 0.00 0.00 4.16
839 2111 1.471119 GTCTACGGTGAGGGTCATCA 58.529 55.000 0.00 0.00 0.00 3.07
872 2144 0.542232 AGTAGGGTGCTCAAGTCCGT 60.542 55.000 0.00 0.00 0.00 4.69
874 2146 0.537653 GGAGTAGGGTGCTCAAGTCC 59.462 60.000 0.00 0.00 34.83 3.85
878 2331 1.486211 GCTAGGAGTAGGGTGCTCAA 58.514 55.000 0.00 0.00 34.83 3.02
884 2337 1.153005 CGGTCGCTAGGAGTAGGGT 60.153 63.158 0.00 0.00 39.64 4.34
917 2370 1.906105 AAGGCGCCGTGGAATAGGAA 61.906 55.000 23.20 0.00 0.00 3.36
997 2453 4.408821 GCGACCCTGGACCATGCA 62.409 66.667 0.00 0.00 0.00 3.96
1131 2599 2.535317 AACAGGCACCCCATCCCT 60.535 61.111 0.00 0.00 0.00 4.20
1202 2670 2.312398 GACGGAGGAAGAGACGAGCG 62.312 65.000 0.00 0.00 0.00 5.03
1283 2762 4.155733 TGATCCGTGCCCGCGAAT 62.156 61.111 8.23 0.00 0.00 3.34
1287 2766 4.221422 TAGCTGATCCGTGCCCGC 62.221 66.667 0.00 0.00 0.00 6.13
1456 2938 5.060427 TGGAGAAGGAGACAAAATTGGAA 57.940 39.130 0.00 0.00 0.00 3.53
1458 2944 3.192212 GCTGGAGAAGGAGACAAAATTGG 59.808 47.826 0.00 0.00 0.00 3.16
1460 2946 3.425659 GGCTGGAGAAGGAGACAAAATT 58.574 45.455 0.00 0.00 0.00 1.82
1466 2957 1.671901 CCTCGGCTGGAGAAGGAGAC 61.672 65.000 6.86 0.00 46.23 3.36
1557 3086 3.322466 CACCCTCTTGCTCCCCGT 61.322 66.667 0.00 0.00 0.00 5.28
1690 3219 3.787785 TGCGTCACTAGTGAGACAAAAA 58.212 40.909 25.81 5.18 40.75 1.94
1871 4122 4.328983 GCATTTCATTCAGCAATGGTTCTG 59.671 41.667 0.00 0.00 40.08 3.02
1935 4186 9.713740 GCTGAATTCAGATTGTTAAGAATACAG 57.286 33.333 34.43 6.92 46.59 2.74
1988 4239 4.980434 GCACAATAAAGAATGCATAGCCAG 59.020 41.667 0.00 0.00 38.00 4.85
2022 4273 3.967326 TCTCTTTCTCTTGTTCCACCTCA 59.033 43.478 0.00 0.00 0.00 3.86
2068 4319 7.092891 TGAGGAAGAGATGCCATTTAGAAACTA 60.093 37.037 0.00 0.00 0.00 2.24
2108 4359 3.390311 AGTCTTCAACCCCGTTAACTTCT 59.610 43.478 3.71 0.00 0.00 2.85
2161 4412 1.136305 CATTCCCGCTAAGAGGAACGA 59.864 52.381 0.00 0.00 44.70 3.85
2173 4424 0.819259 TCATAGGCAAGCATTCCCGC 60.819 55.000 0.00 0.00 0.00 6.13
2332 4583 3.375299 GCATCCGAAGTTCTAACAATGCT 59.625 43.478 0.56 0.00 36.29 3.79
2357 4608 8.638685 AAATCACAGAAACAGTTGATGAAAAG 57.361 30.769 5.25 0.00 0.00 2.27
2507 4758 5.299782 AGCTAGCTTAGTACATACAGTCCAC 59.700 44.000 12.68 0.00 0.00 4.02
2569 4820 6.062258 ACCCAAGCAATATAGTGTAACAGT 57.938 37.500 1.67 0.00 41.43 3.55
2585 4836 1.081442 GCGTTGCAGTAACCCAAGC 60.081 57.895 0.00 0.00 35.84 4.01
2613 4864 7.701539 TTGGTAATTGATGAAATGCAGTAGT 57.298 32.000 0.00 0.00 0.00 2.73
2637 4888 6.344500 TGTGTTGGACATGCAACTAAATTTT 58.656 32.000 15.94 0.00 32.91 1.82
2733 4984 8.846943 ACTCACATCAGTTAACATCATTACAA 57.153 30.769 8.61 0.00 0.00 2.41
2820 5071 7.978099 AGAAGGAAATTGCCCATAATTAACT 57.022 32.000 0.00 0.00 30.47 2.24
2919 5170 7.922837 TCATCGTGAACTAGACATACGAATAA 58.077 34.615 15.70 6.29 45.30 1.40
3061 5312 1.609072 GGGCTGACACTGAAGAAAACC 59.391 52.381 0.00 0.00 0.00 3.27
3145 5396 1.605058 GCTTGGAGTCTGGCGGTAGA 61.605 60.000 0.00 0.00 0.00 2.59
3209 5460 3.056607 ACAGGCATTATGGCAACTGTTTC 60.057 43.478 20.59 0.00 46.46 2.78
3449 6039 8.918961 TTGGTTTCAGTAAACAACAACAATAG 57.081 30.769 3.66 0.00 45.68 1.73
3451 6041 8.785329 ATTTGGTTTCAGTAAACAACAACAAT 57.215 26.923 3.66 0.00 45.68 2.71
3730 6322 3.068873 AGGTCAGCGCCAAAATTAAAACA 59.931 39.130 2.29 0.00 0.00 2.83
3838 6433 3.144506 ACTCAATCACCTTCACAGCAAG 58.855 45.455 0.00 0.00 0.00 4.01
3890 6485 5.582269 ACAGTTCACATATCAAGAACCATCG 59.418 40.000 0.00 0.00 41.86 3.84
4105 6715 6.940867 GTGAAAGGGGACAATTTCTAGTACTT 59.059 38.462 0.00 0.00 36.78 2.24
4520 7155 7.523293 TCATTACACAGGAATTGTTCAACAT 57.477 32.000 0.00 0.00 38.16 2.71
4551 7186 4.917385 AGCAACATGTACACAGGGAATAA 58.083 39.130 0.00 0.00 30.95 1.40
4630 7265 3.128589 CACGTTTATTTCTGGGTCATGGG 59.871 47.826 0.00 0.00 0.00 4.00
4862 7497 1.005924 AGATTCAGCCCGGTCCAATTT 59.994 47.619 0.00 0.00 0.00 1.82
4895 7543 3.058160 GCATCCAGCGTGGCAAGT 61.058 61.111 1.69 0.00 37.47 3.16
4924 7572 0.178903 TGGTGACTAGCAACCTCCCT 60.179 55.000 13.93 0.00 31.36 4.20
4939 7588 8.506168 AATATGTCTACTATGGTGTTTTGGTG 57.494 34.615 0.00 0.00 0.00 4.17
4948 7597 9.747898 TTTTGACCAAAATATGTCTACTATGGT 57.252 29.630 4.00 0.00 42.31 3.55
4952 7601 9.275398 ACGTTTTTGACCAAAATATGTCTACTA 57.725 29.630 8.52 0.00 39.69 1.82
4972 7621 1.232119 GGAATGGTCGTGGACGTTTT 58.768 50.000 0.00 0.00 40.80 2.43
5045 7694 2.028130 TGCGACCTTTTTGTGACCAAT 58.972 42.857 0.00 0.00 0.00 3.16
5114 7763 6.963242 GCACATCACACTACAAGAATTATGTG 59.037 38.462 0.00 0.00 42.72 3.21
5120 7769 6.094048 GGTAATGCACATCACACTACAAGAAT 59.906 38.462 0.00 0.00 0.00 2.40
5137 7786 2.742116 GGGCCCTCTCGGTAATGCA 61.742 63.158 17.04 0.00 0.00 3.96
5138 7787 2.111251 GGGCCCTCTCGGTAATGC 59.889 66.667 17.04 0.00 0.00 3.56
5139 7788 1.048724 TCTGGGCCCTCTCGGTAATG 61.049 60.000 25.70 0.29 0.00 1.90
5140 7789 0.760945 CTCTGGGCCCTCTCGGTAAT 60.761 60.000 25.70 0.00 0.00 1.89
5141 7790 1.381327 CTCTGGGCCCTCTCGGTAA 60.381 63.158 25.70 0.00 0.00 2.85
5142 7791 1.656092 ATCTCTGGGCCCTCTCGGTA 61.656 60.000 25.70 0.00 0.00 4.02
5143 7792 1.656092 TATCTCTGGGCCCTCTCGGT 61.656 60.000 25.70 7.65 0.00 4.69
5144 7793 1.153989 TATCTCTGGGCCCTCTCGG 59.846 63.158 25.70 8.84 0.00 4.63
5145 7794 1.182385 GGTATCTCTGGGCCCTCTCG 61.182 65.000 25.70 9.01 0.00 4.04
5146 7795 0.189822 AGGTATCTCTGGGCCCTCTC 59.810 60.000 25.70 6.25 0.00 3.20
5147 7796 0.189822 GAGGTATCTCTGGGCCCTCT 59.810 60.000 25.70 7.22 38.90 3.69
5148 7797 2.753319 GAGGTATCTCTGGGCCCTC 58.247 63.158 25.70 4.48 37.07 4.30
5169 7818 2.096417 GGTTTTGTCACTCCGATTGTCG 60.096 50.000 0.00 0.00 40.07 4.35
5170 7819 3.139077 AGGTTTTGTCACTCCGATTGTC 58.861 45.455 0.00 0.00 0.00 3.18
5171 7820 3.208747 AGGTTTTGTCACTCCGATTGT 57.791 42.857 0.00 0.00 0.00 2.71
5172 7821 5.643777 AGATTAGGTTTTGTCACTCCGATTG 59.356 40.000 0.00 0.00 0.00 2.67
5173 7822 5.805728 AGATTAGGTTTTGTCACTCCGATT 58.194 37.500 0.00 0.00 0.00 3.34
5174 7823 5.420409 GAGATTAGGTTTTGTCACTCCGAT 58.580 41.667 0.00 0.00 0.00 4.18
5175 7824 4.617530 CGAGATTAGGTTTTGTCACTCCGA 60.618 45.833 0.00 0.00 0.00 4.55
5176 7825 3.612860 CGAGATTAGGTTTTGTCACTCCG 59.387 47.826 0.00 0.00 0.00 4.63
5177 7826 4.817517 TCGAGATTAGGTTTTGTCACTCC 58.182 43.478 0.00 0.00 0.00 3.85
5178 7827 6.780706 TTTCGAGATTAGGTTTTGTCACTC 57.219 37.500 0.00 0.00 0.00 3.51
5179 7828 7.063074 CGTATTTCGAGATTAGGTTTTGTCACT 59.937 37.037 0.00 0.00 42.86 3.41
5180 7829 7.062605 TCGTATTTCGAGATTAGGTTTTGTCAC 59.937 37.037 0.00 0.00 44.01 3.67
5181 7830 7.092079 TCGTATTTCGAGATTAGGTTTTGTCA 58.908 34.615 0.00 0.00 44.01 3.58
5182 7831 7.515957 TCGTATTTCGAGATTAGGTTTTGTC 57.484 36.000 0.00 0.00 44.01 3.18
5196 7845 4.986034 ACATGTTGAGTTGTCGTATTTCGA 59.014 37.500 0.00 0.00 46.83 3.71
5197 7846 5.264060 ACATGTTGAGTTGTCGTATTTCG 57.736 39.130 0.00 0.00 41.41 3.46
5198 7847 6.146510 TGGTACATGTTGAGTTGTCGTATTTC 59.853 38.462 2.30 0.00 0.00 2.17
5199 7848 5.992829 TGGTACATGTTGAGTTGTCGTATTT 59.007 36.000 2.30 0.00 0.00 1.40
5200 7849 5.543714 TGGTACATGTTGAGTTGTCGTATT 58.456 37.500 2.30 0.00 0.00 1.89
5201 7850 5.142061 TGGTACATGTTGAGTTGTCGTAT 57.858 39.130 2.30 0.00 0.00 3.06
5202 7851 4.587584 TGGTACATGTTGAGTTGTCGTA 57.412 40.909 2.30 0.00 0.00 3.43
5203 7852 3.462483 TGGTACATGTTGAGTTGTCGT 57.538 42.857 2.30 0.00 0.00 4.34
5208 7857 9.295308 GGTGTTTCCAATGGTACATGTTGAGTT 62.295 40.741 2.30 0.00 38.80 3.01
5209 7858 7.911054 GGTGTTTCCAATGGTACATGTTGAGT 61.911 42.308 2.30 0.00 38.80 3.41
5210 7859 5.564651 GGTGTTTCCAATGGTACATGTTGAG 60.565 44.000 2.30 0.00 38.80 3.02
5211 7860 4.279671 GGTGTTTCCAATGGTACATGTTGA 59.720 41.667 2.30 0.00 38.80 3.18
5212 7861 4.280677 AGGTGTTTCCAATGGTACATGTTG 59.719 41.667 2.30 0.00 40.79 3.33
5213 7862 4.280677 CAGGTGTTTCCAATGGTACATGTT 59.719 41.667 2.30 0.00 40.79 2.71
5214 7863 3.826157 CAGGTGTTTCCAATGGTACATGT 59.174 43.478 2.69 2.69 40.79 3.21
5215 7864 3.826157 ACAGGTGTTTCCAATGGTACATG 59.174 43.478 11.70 10.80 40.79 3.21
5216 7865 4.112634 ACAGGTGTTTCCAATGGTACAT 57.887 40.909 11.70 0.00 40.79 2.29
5217 7866 3.586470 ACAGGTGTTTCCAATGGTACA 57.414 42.857 0.00 2.47 40.71 2.90
5218 7867 4.901868 TCTACAGGTGTTTCCAATGGTAC 58.098 43.478 0.00 0.00 39.02 3.34
5219 7868 4.564821 GCTCTACAGGTGTTTCCAATGGTA 60.565 45.833 0.00 0.00 39.02 3.25
5220 7869 3.810743 GCTCTACAGGTGTTTCCAATGGT 60.811 47.826 0.00 0.00 39.02 3.55
5221 7870 2.749621 GCTCTACAGGTGTTTCCAATGG 59.250 50.000 0.00 0.00 39.02 3.16
5222 7871 3.679389 AGCTCTACAGGTGTTTCCAATG 58.321 45.455 0.00 0.00 39.02 2.82
5223 7872 3.307762 GGAGCTCTACAGGTGTTTCCAAT 60.308 47.826 14.64 0.00 39.02 3.16
5224 7873 2.038557 GGAGCTCTACAGGTGTTTCCAA 59.961 50.000 14.64 0.00 39.02 3.53
5225 7874 1.623811 GGAGCTCTACAGGTGTTTCCA 59.376 52.381 14.64 0.00 39.02 3.53
5226 7875 1.903183 AGGAGCTCTACAGGTGTTTCC 59.097 52.381 14.64 0.00 0.00 3.13
5227 7876 3.686916 AAGGAGCTCTACAGGTGTTTC 57.313 47.619 14.64 0.00 0.00 2.78
5228 7877 5.763876 ATAAAGGAGCTCTACAGGTGTTT 57.236 39.130 14.64 3.94 0.00 2.83
5229 7878 6.869206 TTATAAAGGAGCTCTACAGGTGTT 57.131 37.500 14.64 0.00 0.00 3.32
5230 7879 6.611642 TGATTATAAAGGAGCTCTACAGGTGT 59.388 38.462 14.64 0.00 0.00 4.16
5231 7880 6.926272 GTGATTATAAAGGAGCTCTACAGGTG 59.074 42.308 14.64 0.00 0.00 4.00
5232 7881 6.042208 GGTGATTATAAAGGAGCTCTACAGGT 59.958 42.308 14.64 0.00 0.00 4.00
5233 7882 6.459923 GGTGATTATAAAGGAGCTCTACAGG 58.540 44.000 14.64 0.00 0.00 4.00
5234 7883 6.042093 TGGGTGATTATAAAGGAGCTCTACAG 59.958 42.308 14.64 0.00 0.00 2.74
5235 7884 5.903010 TGGGTGATTATAAAGGAGCTCTACA 59.097 40.000 14.64 0.00 0.00 2.74
5236 7885 6.042208 ACTGGGTGATTATAAAGGAGCTCTAC 59.958 42.308 14.64 0.00 0.00 2.59
5237 7886 6.143915 ACTGGGTGATTATAAAGGAGCTCTA 58.856 40.000 14.64 0.00 0.00 2.43
5238 7887 4.971924 ACTGGGTGATTATAAAGGAGCTCT 59.028 41.667 14.64 0.00 0.00 4.09
5239 7888 5.297569 ACTGGGTGATTATAAAGGAGCTC 57.702 43.478 4.71 4.71 0.00 4.09
5240 7889 5.717119 AACTGGGTGATTATAAAGGAGCT 57.283 39.130 0.00 0.00 0.00 4.09
5241 7890 5.465724 CGTAACTGGGTGATTATAAAGGAGC 59.534 44.000 0.00 0.00 0.00 4.70
5242 7891 6.579865 ACGTAACTGGGTGATTATAAAGGAG 58.420 40.000 0.00 0.00 0.00 3.69
5243 7892 6.549433 ACGTAACTGGGTGATTATAAAGGA 57.451 37.500 0.00 0.00 0.00 3.36
5244 7893 6.596497 ACAACGTAACTGGGTGATTATAAAGG 59.404 38.462 0.00 0.00 0.00 3.11
5245 7894 7.332430 TCACAACGTAACTGGGTGATTATAAAG 59.668 37.037 0.00 0.00 33.88 1.85
5246 7895 7.118101 GTCACAACGTAACTGGGTGATTATAAA 59.882 37.037 0.00 0.00 40.23 1.40
5247 7896 6.591062 GTCACAACGTAACTGGGTGATTATAA 59.409 38.462 0.00 0.00 40.23 0.98
5248 7897 6.101332 GTCACAACGTAACTGGGTGATTATA 58.899 40.000 0.00 0.00 40.23 0.98
5249 7898 4.933400 GTCACAACGTAACTGGGTGATTAT 59.067 41.667 0.00 0.00 40.23 1.28
5250 7899 4.309099 GTCACAACGTAACTGGGTGATTA 58.691 43.478 0.00 0.00 40.23 1.75
5251 7900 3.135994 GTCACAACGTAACTGGGTGATT 58.864 45.455 0.00 0.00 40.23 2.57
5252 7901 2.762745 GTCACAACGTAACTGGGTGAT 58.237 47.619 0.00 0.00 40.23 3.06
5253 7902 1.536496 CGTCACAACGTAACTGGGTGA 60.536 52.381 0.00 0.00 43.94 4.02
5254 7903 0.856641 CGTCACAACGTAACTGGGTG 59.143 55.000 0.00 0.00 43.94 4.61
5255 7904 3.277652 CGTCACAACGTAACTGGGT 57.722 52.632 0.00 0.00 43.94 4.51
5265 7914 1.666700 TGTGCTACCAAACGTCACAAC 59.333 47.619 1.90 0.00 35.08 3.32
5266 7915 1.666700 GTGTGCTACCAAACGTCACAA 59.333 47.619 5.66 0.00 39.07 3.33
5267 7916 1.292061 GTGTGCTACCAAACGTCACA 58.708 50.000 0.34 0.34 35.57 3.58
5268 7917 1.292061 TGTGTGCTACCAAACGTCAC 58.708 50.000 0.00 0.00 31.47 3.67
5269 7918 2.025589 TTGTGTGCTACCAAACGTCA 57.974 45.000 0.00 0.00 31.47 4.35
5270 7919 2.353579 ACTTTGTGTGCTACCAAACGTC 59.646 45.455 0.00 0.00 31.47 4.34
5271 7920 2.096819 CACTTTGTGTGCTACCAAACGT 59.903 45.455 0.00 0.00 40.06 3.99
5272 7921 2.715268 CACTTTGTGTGCTACCAAACG 58.285 47.619 0.00 0.00 40.06 3.60
5273 7922 4.102649 GAACACTTTGTGTGCTACCAAAC 58.897 43.478 4.01 0.00 46.79 2.93
5274 7923 3.129638 GGAACACTTTGTGTGCTACCAAA 59.870 43.478 8.51 0.00 46.79 3.28
5275 7924 2.685897 GGAACACTTTGTGTGCTACCAA 59.314 45.455 8.51 0.00 46.79 3.67
5276 7925 2.092646 AGGAACACTTTGTGTGCTACCA 60.093 45.455 8.51 0.00 46.79 3.25
5277 7926 2.548480 GAGGAACACTTTGTGTGCTACC 59.452 50.000 8.51 8.09 46.79 3.18
5278 7927 2.548480 GGAGGAACACTTTGTGTGCTAC 59.452 50.000 8.51 3.85 46.79 3.58
5279 7928 2.805295 CGGAGGAACACTTTGTGTGCTA 60.805 50.000 8.51 0.00 46.79 3.49
5280 7929 1.680338 GGAGGAACACTTTGTGTGCT 58.320 50.000 8.51 2.39 46.79 4.40
5281 7930 0.307760 CGGAGGAACACTTTGTGTGC 59.692 55.000 4.01 2.15 46.79 4.57
5299 7948 2.012937 TATGCAACTCCCGTTTACCG 57.987 50.000 0.00 0.00 0.00 4.02
5300 7949 4.196971 AGATTATGCAACTCCCGTTTACC 58.803 43.478 0.00 0.00 0.00 2.85
5301 7950 4.873827 TGAGATTATGCAACTCCCGTTTAC 59.126 41.667 0.00 0.00 0.00 2.01
5302 7951 5.092554 TGAGATTATGCAACTCCCGTTTA 57.907 39.130 0.00 0.00 0.00 2.01
5303 7952 3.950397 TGAGATTATGCAACTCCCGTTT 58.050 40.909 0.00 0.00 0.00 3.60
5304 7953 3.627395 TGAGATTATGCAACTCCCGTT 57.373 42.857 0.00 0.00 0.00 4.44
5305 7954 3.845781 ATGAGATTATGCAACTCCCGT 57.154 42.857 0.00 0.00 0.00 5.28
5306 7955 4.887748 ACTATGAGATTATGCAACTCCCG 58.112 43.478 0.00 0.00 0.00 5.14
5307 7956 6.058183 ACAACTATGAGATTATGCAACTCCC 58.942 40.000 0.00 0.00 0.00 4.30
5308 7957 7.386299 CCTACAACTATGAGATTATGCAACTCC 59.614 40.741 0.00 0.00 0.00 3.85
5309 7958 8.144478 TCCTACAACTATGAGATTATGCAACTC 58.856 37.037 0.00 0.00 0.00 3.01
5310 7959 8.023021 TCCTACAACTATGAGATTATGCAACT 57.977 34.615 0.00 0.00 0.00 3.16
5311 7960 8.552034 GTTCCTACAACTATGAGATTATGCAAC 58.448 37.037 0.00 0.00 0.00 4.17
5312 7961 8.264347 TGTTCCTACAACTATGAGATTATGCAA 58.736 33.333 0.00 0.00 0.00 4.08
5313 7962 7.791029 TGTTCCTACAACTATGAGATTATGCA 58.209 34.615 0.00 0.00 0.00 3.96
5314 7963 8.715998 CATGTTCCTACAACTATGAGATTATGC 58.284 37.037 0.00 0.00 37.91 3.14
5315 7964 9.770097 ACATGTTCCTACAACTATGAGATTATG 57.230 33.333 0.00 0.00 37.91 1.90
5326 7975 8.758829 TCATGACTTATACATGTTCCTACAACT 58.241 33.333 2.30 0.00 43.56 3.16
5327 7976 8.942338 TCATGACTTATACATGTTCCTACAAC 57.058 34.615 2.30 0.00 43.56 3.32
5328 7977 9.599866 CTTCATGACTTATACATGTTCCTACAA 57.400 33.333 2.30 0.00 43.56 2.41
5329 7978 8.977412 TCTTCATGACTTATACATGTTCCTACA 58.023 33.333 2.30 0.00 43.56 2.74
5330 7979 9.817809 TTCTTCATGACTTATACATGTTCCTAC 57.182 33.333 2.30 0.00 43.56 3.18
5332 7981 9.388506 CTTTCTTCATGACTTATACATGTTCCT 57.611 33.333 2.30 0.00 43.56 3.36
5333 7982 8.125448 GCTTTCTTCATGACTTATACATGTTCC 58.875 37.037 2.30 0.00 43.56 3.62
5334 7983 8.668353 TGCTTTCTTCATGACTTATACATGTTC 58.332 33.333 2.30 0.00 43.56 3.18
5335 7984 8.565896 TGCTTTCTTCATGACTTATACATGTT 57.434 30.769 2.30 0.00 43.56 2.71
5336 7985 8.565896 TTGCTTTCTTCATGACTTATACATGT 57.434 30.769 2.69 2.69 43.56 3.21
5339 7988 8.830580 GCTATTGCTTTCTTCATGACTTATACA 58.169 33.333 0.00 0.00 36.03 2.29
5340 7989 8.830580 TGCTATTGCTTTCTTCATGACTTATAC 58.169 33.333 0.00 0.00 40.48 1.47
5341 7990 8.962884 TGCTATTGCTTTCTTCATGACTTATA 57.037 30.769 0.00 0.00 40.48 0.98
5342 7991 7.870509 TGCTATTGCTTTCTTCATGACTTAT 57.129 32.000 0.00 0.00 40.48 1.73
5343 7992 7.686438 TTGCTATTGCTTTCTTCATGACTTA 57.314 32.000 0.00 0.00 40.48 2.24
5344 7993 6.579666 TTGCTATTGCTTTCTTCATGACTT 57.420 33.333 0.00 0.00 40.48 3.01
5345 7994 6.579666 TTTGCTATTGCTTTCTTCATGACT 57.420 33.333 0.00 0.00 40.48 3.41
5346 7995 7.823149 ATTTTGCTATTGCTTTCTTCATGAC 57.177 32.000 0.00 0.00 40.48 3.06
5347 7996 8.742777 AGTATTTTGCTATTGCTTTCTTCATGA 58.257 29.630 0.00 0.00 40.48 3.07
5348 7997 8.922058 AGTATTTTGCTATTGCTTTCTTCATG 57.078 30.769 0.00 0.00 40.48 3.07
5363 8012 8.915057 AGCACTTGATCATATAGTATTTTGCT 57.085 30.769 0.00 0.00 0.00 3.91
5371 8020 7.810282 CGTTAGCTTAGCACTTGATCATATAGT 59.190 37.037 7.07 0.00 0.00 2.12
5372 8021 7.274468 CCGTTAGCTTAGCACTTGATCATATAG 59.726 40.741 7.07 0.00 0.00 1.31
5373 8022 7.039993 TCCGTTAGCTTAGCACTTGATCATATA 60.040 37.037 7.07 0.00 0.00 0.86
5374 8023 5.928839 CCGTTAGCTTAGCACTTGATCATAT 59.071 40.000 7.07 0.00 0.00 1.78
5375 8024 5.068591 TCCGTTAGCTTAGCACTTGATCATA 59.931 40.000 7.07 0.00 0.00 2.15
5376 8025 4.122776 CCGTTAGCTTAGCACTTGATCAT 58.877 43.478 7.07 0.00 0.00 2.45
5377 8026 3.194755 TCCGTTAGCTTAGCACTTGATCA 59.805 43.478 7.07 0.00 0.00 2.92
5378 8027 3.782046 TCCGTTAGCTTAGCACTTGATC 58.218 45.455 7.07 0.00 0.00 2.92
5379 8028 3.887621 TCCGTTAGCTTAGCACTTGAT 57.112 42.857 7.07 0.00 0.00 2.57
5380 8029 3.671008 TTCCGTTAGCTTAGCACTTGA 57.329 42.857 7.07 0.00 0.00 3.02
5381 8030 3.063997 CCATTCCGTTAGCTTAGCACTTG 59.936 47.826 7.07 0.00 0.00 3.16
5382 8031 3.270877 CCATTCCGTTAGCTTAGCACTT 58.729 45.455 7.07 0.00 0.00 3.16
5383 8032 2.420129 CCCATTCCGTTAGCTTAGCACT 60.420 50.000 7.07 0.00 0.00 4.40
5384 8033 1.940613 CCCATTCCGTTAGCTTAGCAC 59.059 52.381 7.07 0.00 0.00 4.40
5385 8034 1.557832 ACCCATTCCGTTAGCTTAGCA 59.442 47.619 7.07 0.00 0.00 3.49
5386 8035 2.210961 GACCCATTCCGTTAGCTTAGC 58.789 52.381 0.00 0.00 0.00 3.09
5387 8036 3.536956 TGACCCATTCCGTTAGCTTAG 57.463 47.619 0.00 0.00 0.00 2.18
5388 8037 3.262405 ACTTGACCCATTCCGTTAGCTTA 59.738 43.478 0.00 0.00 0.00 3.09
5389 8038 2.039879 ACTTGACCCATTCCGTTAGCTT 59.960 45.455 0.00 0.00 0.00 3.74
5390 8039 1.628846 ACTTGACCCATTCCGTTAGCT 59.371 47.619 0.00 0.00 0.00 3.32
5391 8040 2.007608 GACTTGACCCATTCCGTTAGC 58.992 52.381 0.00 0.00 0.00 3.09
5392 8041 3.328382 TGACTTGACCCATTCCGTTAG 57.672 47.619 0.00 0.00 0.00 2.34
5393 8042 3.773418 TTGACTTGACCCATTCCGTTA 57.227 42.857 0.00 0.00 0.00 3.18
5394 8043 2.649531 TTGACTTGACCCATTCCGTT 57.350 45.000 0.00 0.00 0.00 4.44
5395 8044 2.039746 TGATTGACTTGACCCATTCCGT 59.960 45.455 0.00 0.00 0.00 4.69
5396 8045 2.420022 GTGATTGACTTGACCCATTCCG 59.580 50.000 0.00 0.00 0.00 4.30
5397 8046 3.420893 TGTGATTGACTTGACCCATTCC 58.579 45.455 0.00 0.00 0.00 3.01
5398 8047 4.701651 TGATGTGATTGACTTGACCCATTC 59.298 41.667 0.00 0.00 0.00 2.67
5399 8048 4.665451 TGATGTGATTGACTTGACCCATT 58.335 39.130 0.00 0.00 0.00 3.16
5400 8049 4.305539 TGATGTGATTGACTTGACCCAT 57.694 40.909 0.00 0.00 0.00 4.00
5401 8050 3.786368 TGATGTGATTGACTTGACCCA 57.214 42.857 0.00 0.00 0.00 4.51
5402 8051 4.946157 AGAATGATGTGATTGACTTGACCC 59.054 41.667 0.00 0.00 0.00 4.46
5403 8052 5.065731 GGAGAATGATGTGATTGACTTGACC 59.934 44.000 0.00 0.00 0.00 4.02
5404 8053 5.879223 AGGAGAATGATGTGATTGACTTGAC 59.121 40.000 0.00 0.00 0.00 3.18
5405 8054 6.058553 AGGAGAATGATGTGATTGACTTGA 57.941 37.500 0.00 0.00 0.00 3.02
5406 8055 7.854557 TTAGGAGAATGATGTGATTGACTTG 57.145 36.000 0.00 0.00 0.00 3.16
5407 8056 8.270030 TCATTAGGAGAATGATGTGATTGACTT 58.730 33.333 0.00 0.00 32.21 3.01
5408 8057 7.799081 TCATTAGGAGAATGATGTGATTGACT 58.201 34.615 0.00 0.00 32.21 3.41
5409 8058 8.618702 ATCATTAGGAGAATGATGTGATTGAC 57.381 34.615 11.08 0.00 43.52 3.18
5418 8067 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
5419 8068 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
5420 8069 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
5421 8070 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
5422 8071 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
5423 8072 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
5424 8073 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
5425 8074 5.880164 TTAACGGGATCACATCATTAGGA 57.120 39.130 0.00 0.00 0.00 2.94
5426 8075 6.230472 TGATTAACGGGATCACATCATTAGG 58.770 40.000 0.00 0.00 0.00 2.69
5427 8076 7.728847 TTGATTAACGGGATCACATCATTAG 57.271 36.000 0.00 0.00 33.51 1.73
5428 8077 8.567104 CATTTGATTAACGGGATCACATCATTA 58.433 33.333 0.00 0.00 33.51 1.90
5429 8078 7.285172 TCATTTGATTAACGGGATCACATCATT 59.715 33.333 0.00 0.00 33.51 2.57
5430 8079 6.772233 TCATTTGATTAACGGGATCACATCAT 59.228 34.615 0.00 0.00 33.51 2.45
5431 8080 6.038161 GTCATTTGATTAACGGGATCACATCA 59.962 38.462 0.00 0.00 33.51 3.07
5432 8081 6.038161 TGTCATTTGATTAACGGGATCACATC 59.962 38.462 0.00 0.00 33.51 3.06
5433 8082 5.885352 TGTCATTTGATTAACGGGATCACAT 59.115 36.000 0.00 0.00 33.51 3.21
5434 8083 5.249420 TGTCATTTGATTAACGGGATCACA 58.751 37.500 0.00 0.00 33.51 3.58
5435 8084 5.811399 TGTCATTTGATTAACGGGATCAC 57.189 39.130 0.00 0.00 33.51 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.