Multiple sequence alignment - TraesCS3B01G083000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G083000 chr3B 100.000 2714 0 0 1 2714 52455978 52458691 0.000000e+00 5012
1 TraesCS3B01G083000 chr3B 89.536 1099 99 6 946 2043 52416443 52417526 0.000000e+00 1378
2 TraesCS3B01G083000 chr3B 87.055 842 92 13 946 1778 52553608 52554441 0.000000e+00 935
3 TraesCS3B01G083000 chr3B 76.972 317 63 8 2140 2450 52835593 52835281 3.590000e-39 172
4 TraesCS3B01G083000 chr7B 97.992 946 17 2 1 945 718894398 718893454 0.000000e+00 1640
5 TraesCS3B01G083000 chr5B 97.692 953 20 2 1 951 454313793 454314745 0.000000e+00 1637
6 TraesCS3B01G083000 chr2B 97.886 946 19 1 1 945 230094952 230094007 0.000000e+00 1635
7 TraesCS3B01G083000 chr2B 97.780 946 20 1 1 945 167789372 167790317 0.000000e+00 1629
8 TraesCS3B01G083000 chr4B 97.780 946 19 2 1 945 127674150 127673206 0.000000e+00 1629
9 TraesCS3B01G083000 chr4B 97.674 946 21 1 1 945 429666189 429665244 0.000000e+00 1624
10 TraesCS3B01G083000 chr4B 97.476 951 22 2 1 949 518107382 518108332 0.000000e+00 1622
11 TraesCS3B01G083000 chr1B 97.677 947 20 2 1 945 298141751 298140805 0.000000e+00 1626
12 TraesCS3B01G083000 chr1B 97.674 946 21 1 1 945 198672663 198671718 0.000000e+00 1624
13 TraesCS3B01G083000 chr3A 90.958 1106 92 4 939 2043 41611762 41612860 0.000000e+00 1482
14 TraesCS3B01G083000 chr3A 90.375 1039 68 9 939 1976 41050392 41051399 0.000000e+00 1336
15 TraesCS3B01G083000 chr3A 91.766 753 62 0 946 1698 41152258 41153010 0.000000e+00 1048
16 TraesCS3B01G083000 chr3A 88.876 845 91 1 946 1790 41218964 41219805 0.000000e+00 1037
17 TraesCS3B01G083000 chr3A 89.051 822 83 5 947 1765 41066773 41067590 0.000000e+00 1013
18 TraesCS3B01G083000 chr3A 89.189 814 77 6 928 1741 41539502 41540304 0.000000e+00 1005
19 TraesCS3B01G083000 chr3A 94.041 386 22 1 2070 2455 41051564 41051948 3.890000e-163 584
20 TraesCS3B01G083000 chr3A 90.640 203 14 3 1841 2043 41219820 41220017 5.760000e-67 265
21 TraesCS3B01G083000 chr3A 97.849 93 1 1 2454 2546 41051994 41052085 2.800000e-35 159
22 TraesCS3B01G083000 chr3D 89.176 813 86 2 946 1757 30008998 30009809 0.000000e+00 1013


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G083000 chr3B 52455978 52458691 2713 False 5012 5012 100.000000 1 2714 1 chr3B.!!$F2 2713
1 TraesCS3B01G083000 chr3B 52416443 52417526 1083 False 1378 1378 89.536000 946 2043 1 chr3B.!!$F1 1097
2 TraesCS3B01G083000 chr3B 52553608 52554441 833 False 935 935 87.055000 946 1778 1 chr3B.!!$F3 832
3 TraesCS3B01G083000 chr7B 718893454 718894398 944 True 1640 1640 97.992000 1 945 1 chr7B.!!$R1 944
4 TraesCS3B01G083000 chr5B 454313793 454314745 952 False 1637 1637 97.692000 1 951 1 chr5B.!!$F1 950
5 TraesCS3B01G083000 chr2B 230094007 230094952 945 True 1635 1635 97.886000 1 945 1 chr2B.!!$R1 944
6 TraesCS3B01G083000 chr2B 167789372 167790317 945 False 1629 1629 97.780000 1 945 1 chr2B.!!$F1 944
7 TraesCS3B01G083000 chr4B 127673206 127674150 944 True 1629 1629 97.780000 1 945 1 chr4B.!!$R1 944
8 TraesCS3B01G083000 chr4B 429665244 429666189 945 True 1624 1624 97.674000 1 945 1 chr4B.!!$R2 944
9 TraesCS3B01G083000 chr4B 518107382 518108332 950 False 1622 1622 97.476000 1 949 1 chr4B.!!$F1 948
10 TraesCS3B01G083000 chr1B 298140805 298141751 946 True 1626 1626 97.677000 1 945 1 chr1B.!!$R2 944
11 TraesCS3B01G083000 chr1B 198671718 198672663 945 True 1624 1624 97.674000 1 945 1 chr1B.!!$R1 944
12 TraesCS3B01G083000 chr3A 41611762 41612860 1098 False 1482 1482 90.958000 939 2043 1 chr3A.!!$F4 1104
13 TraesCS3B01G083000 chr3A 41152258 41153010 752 False 1048 1048 91.766000 946 1698 1 chr3A.!!$F2 752
14 TraesCS3B01G083000 chr3A 41066773 41067590 817 False 1013 1013 89.051000 947 1765 1 chr3A.!!$F1 818
15 TraesCS3B01G083000 chr3A 41539502 41540304 802 False 1005 1005 89.189000 928 1741 1 chr3A.!!$F3 813
16 TraesCS3B01G083000 chr3A 41050392 41052085 1693 False 693 1336 94.088333 939 2546 3 chr3A.!!$F5 1607
17 TraesCS3B01G083000 chr3A 41218964 41220017 1053 False 651 1037 89.758000 946 2043 2 chr3A.!!$F6 1097
18 TraesCS3B01G083000 chr3D 30008998 30009809 811 False 1013 1013 89.176000 946 1757 1 chr3D.!!$F1 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 208 0.320374 CGGTGGAGCTGTAAGTTGGA 59.68 55.0 0.0 0.0 35.3 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2058 0.03563 CAAGCTTCTCCTCCCACAGG 60.036 60.0 0.0 0.0 45.15 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 1.668419 AGGTTACATCGATGCAAGCC 58.332 50.000 28.32 24.17 33.25 4.35
206 208 0.320374 CGGTGGAGCTGTAAGTTGGA 59.680 55.000 0.00 0.00 35.30 3.53
227 229 3.202906 AGCAGTTCTAAACAAAGCGTCA 58.797 40.909 0.00 0.00 33.24 4.35
250 252 1.473257 GCGGGATCTACATGTGAAGCA 60.473 52.381 9.11 0.00 0.00 3.91
322 324 5.068723 GGAGTTCATTTCCGATCTAGGTGTA 59.931 44.000 0.00 0.00 0.00 2.90
327 329 6.675026 TCATTTCCGATCTAGGTGTAATACG 58.325 40.000 0.00 0.00 0.00 3.06
748 751 9.883142 TGATACATGTGTGAATACATAGACAAA 57.117 29.630 9.11 0.00 39.17 2.83
1002 1006 8.621286 GGTACCACCTATTTGTCTTCATTAATG 58.379 37.037 7.15 9.29 34.73 1.90
1004 1008 8.281212 ACCACCTATTTGTCTTCATTAATGTC 57.719 34.615 14.97 5.76 0.00 3.06
1016 1020 7.554118 GTCTTCATTAATGTCCTTGATCCTCAA 59.446 37.037 14.97 0.00 34.79 3.02
1058 1062 2.526450 CTTCCACCGATCTGGCAGCA 62.526 60.000 10.34 0.00 43.94 4.41
1258 1262 0.034380 AGTTGCTGCTGCTGATGGAT 60.034 50.000 17.00 0.00 40.48 3.41
1334 1338 1.571460 GACTGCTGCCTCGTTTGTG 59.429 57.895 0.00 0.00 0.00 3.33
1393 1397 0.318120 CCCGCAACAGCTTGGAAAAT 59.682 50.000 0.00 0.00 0.00 1.82
1402 1406 2.095263 CAGCTTGGAAAATACACCACCG 60.095 50.000 0.00 0.00 35.81 4.94
1559 1563 1.735571 GCGTGTATTTGGTTGTCCGAT 59.264 47.619 0.00 0.00 36.30 4.18
1727 1733 3.118592 AGCAGTTAGATGGCTCAAGGTAC 60.119 47.826 0.00 0.00 30.74 3.34
1778 1792 3.120095 TGAGCATTGCGTCTTTGATTCTG 60.120 43.478 2.38 0.00 0.00 3.02
1805 1819 4.568152 ACCATAATTCGCTTATGCAACC 57.432 40.909 10.41 0.00 43.62 3.77
1809 1823 3.840890 AATTCGCTTATGCAACCGAAA 57.159 38.095 14.77 0.00 42.08 3.46
1814 1828 4.162812 TCGCTTATGCAACCGAAATTTTC 58.837 39.130 0.00 0.00 39.64 2.29
1829 1844 6.650390 CCGAAATTTTCTTTGATTCCATTGGT 59.350 34.615 1.86 0.00 0.00 3.67
1836 1851 5.759059 TCTTTGATTCCATTGGTAGCAGAT 58.241 37.500 1.86 0.00 0.00 2.90
1857 1872 8.230486 GCAGATTGCAAGCGTATAAGTTATTAT 58.770 33.333 9.38 0.00 44.26 1.28
1881 1896 3.192541 TGCTCTAAGTTGCTTGTGTGA 57.807 42.857 0.00 0.00 0.00 3.58
1902 1921 8.283291 GTGTGAGTTCCTTCTTTAACTAACATG 58.717 37.037 8.28 0.00 44.83 3.21
1903 1922 7.041372 TGTGAGTTCCTTCTTTAACTAACATGC 60.041 37.037 2.01 0.00 40.57 4.06
1904 1923 6.995686 TGAGTTCCTTCTTTAACTAACATGCA 59.004 34.615 0.00 0.00 36.10 3.96
1905 1924 7.665559 TGAGTTCCTTCTTTAACTAACATGCAT 59.334 33.333 0.00 0.00 36.10 3.96
1906 1925 8.409358 AGTTCCTTCTTTAACTAACATGCATT 57.591 30.769 0.00 0.00 34.23 3.56
1921 1940 0.965439 GCATTGCACTGTAAACCCCA 59.035 50.000 3.15 0.00 0.00 4.96
1993 2038 2.746277 GGTGAAAGGCGGCGACAT 60.746 61.111 18.30 0.00 0.00 3.06
2013 2058 2.494059 TGTGCTTGTTCAAGGAGCTAC 58.506 47.619 13.35 0.00 37.32 3.58
2030 2075 0.413832 TACCTGTGGGAGGAGAAGCT 59.586 55.000 0.00 0.00 46.33 3.74
2043 2088 3.118075 AGGAGAAGCTTGAAGGATAAGGC 60.118 47.826 2.10 0.00 0.00 4.35
2044 2089 3.370953 GGAGAAGCTTGAAGGATAAGGCA 60.371 47.826 2.10 0.00 0.00 4.75
2045 2090 4.459330 GAGAAGCTTGAAGGATAAGGCAT 58.541 43.478 2.10 0.00 0.00 4.40
2046 2091 5.455326 GGAGAAGCTTGAAGGATAAGGCATA 60.455 44.000 2.10 0.00 0.00 3.14
2047 2092 6.006275 AGAAGCTTGAAGGATAAGGCATAA 57.994 37.500 2.10 0.00 0.00 1.90
2048 2093 6.060788 AGAAGCTTGAAGGATAAGGCATAAG 58.939 40.000 2.10 0.00 0.00 1.73
2049 2094 4.723309 AGCTTGAAGGATAAGGCATAAGG 58.277 43.478 0.00 0.00 0.00 2.69
2054 2099 2.143602 AGGATAAGGCATAAGGGGCAA 58.856 47.619 0.00 0.00 35.46 4.52
2066 2111 0.251077 AGGGGCAAAGCTCTGTTCTG 60.251 55.000 0.00 0.00 0.00 3.02
2071 2116 1.268899 GCAAAGCTCTGTTCTGTGCAT 59.731 47.619 0.00 0.00 42.78 3.96
2072 2117 2.485426 GCAAAGCTCTGTTCTGTGCATA 59.515 45.455 0.00 0.00 42.78 3.14
2091 2187 7.339212 TGTGCATACTGCCATAAAAATACTCTT 59.661 33.333 0.00 0.00 44.23 2.85
2092 2188 7.645340 GTGCATACTGCCATAAAAATACTCTTG 59.355 37.037 0.00 0.00 44.23 3.02
2111 2207 2.293170 TGTCTCATTTCGTTTGGTGCA 58.707 42.857 0.00 0.00 0.00 4.57
2130 2226 2.400399 CAACAAGCAAGCTGGTGAATG 58.600 47.619 2.27 0.00 29.24 2.67
2135 2231 1.884579 AGCAAGCTGGTGAATGAAGTG 59.115 47.619 0.00 0.00 0.00 3.16
2177 2273 4.478686 AGGTGCCCAGGAAATACTCTTATT 59.521 41.667 0.00 0.00 0.00 1.40
2178 2274 5.044105 AGGTGCCCAGGAAATACTCTTATTT 60.044 40.000 0.00 0.00 40.08 1.40
2210 2306 7.043656 CGTTTTATTTATTTCTGAATTCGGGCC 60.044 37.037 14.33 0.00 0.00 5.80
2215 2311 2.869503 TTCTGAATTCGGGCCGGAGC 62.870 60.000 27.98 14.66 38.76 4.70
2261 2357 7.897575 TGTGTTGCTTTCAGTTTTGTTTTAT 57.102 28.000 0.00 0.00 0.00 1.40
2284 2380 1.710996 TTTCCGAACTTGGGGCTGGA 61.711 55.000 0.00 0.00 0.00 3.86
2308 2404 3.805807 GCCTTTGCTGTACTGAACCTGTA 60.806 47.826 3.61 0.00 33.53 2.74
2349 2445 7.403312 TTGAATGTAACCGATGAATTCCATT 57.597 32.000 2.27 2.74 35.17 3.16
2364 2460 8.495361 TGAATTCCATTTTGGCATGATTTTAG 57.505 30.769 2.27 0.00 37.47 1.85
2415 2511 3.801114 AGTTTGTTTCTGAACTTGGGC 57.199 42.857 0.00 0.00 36.70 5.36
2419 2515 1.214175 TGTTTCTGAACTTGGGCCTGA 59.786 47.619 4.53 0.00 36.70 3.86
2435 2531 2.352960 GCCTGATACTTTGCTACAGTGC 59.647 50.000 0.00 0.00 0.00 4.40
2480 2623 9.388506 ACTACATTATCAGAAGGAATGTTTGAG 57.611 33.333 11.81 7.80 40.09 3.02
2546 2689 3.270433 AGGAAGTGGTGGATGATGGAAAT 59.730 43.478 0.00 0.00 0.00 2.17
2547 2690 3.382546 GGAAGTGGTGGATGATGGAAATG 59.617 47.826 0.00 0.00 0.00 2.32
2548 2691 4.272489 GAAGTGGTGGATGATGGAAATGA 58.728 43.478 0.00 0.00 0.00 2.57
2549 2692 4.531357 AGTGGTGGATGATGGAAATGAT 57.469 40.909 0.00 0.00 0.00 2.45
2550 2693 4.212716 AGTGGTGGATGATGGAAATGATG 58.787 43.478 0.00 0.00 0.00 3.07
2551 2694 2.960384 TGGTGGATGATGGAAATGATGC 59.040 45.455 0.00 0.00 0.00 3.91
2552 2695 2.298163 GGTGGATGATGGAAATGATGCC 59.702 50.000 0.00 0.00 0.00 4.40
2553 2696 2.960384 GTGGATGATGGAAATGATGCCA 59.040 45.455 0.00 0.00 38.78 4.92
2554 2697 3.385433 GTGGATGATGGAAATGATGCCAA 59.615 43.478 0.00 0.00 37.78 4.52
2555 2698 4.031611 TGGATGATGGAAATGATGCCAAA 58.968 39.130 0.00 0.00 37.78 3.28
2556 2699 4.141892 TGGATGATGGAAATGATGCCAAAC 60.142 41.667 0.00 0.00 37.78 2.93
2557 2700 4.100498 GGATGATGGAAATGATGCCAAACT 59.900 41.667 0.00 0.00 37.78 2.66
2558 2701 4.459390 TGATGGAAATGATGCCAAACTG 57.541 40.909 0.00 0.00 37.78 3.16
2559 2702 4.087907 TGATGGAAATGATGCCAAACTGA 58.912 39.130 0.00 0.00 37.78 3.41
2560 2703 3.940209 TGGAAATGATGCCAAACTGAC 57.060 42.857 0.00 0.00 0.00 3.51
2561 2704 3.229293 TGGAAATGATGCCAAACTGACA 58.771 40.909 0.00 0.00 0.00 3.58
2562 2705 3.005684 TGGAAATGATGCCAAACTGACAC 59.994 43.478 0.00 0.00 0.00 3.67
2563 2706 3.005684 GGAAATGATGCCAAACTGACACA 59.994 43.478 0.00 0.00 0.00 3.72
2564 2707 3.928727 AATGATGCCAAACTGACACAG 57.071 42.857 0.00 0.00 37.52 3.66
2565 2708 0.953727 TGATGCCAAACTGACACAGC 59.046 50.000 0.00 0.00 34.37 4.40
2566 2709 1.242076 GATGCCAAACTGACACAGCT 58.758 50.000 0.00 0.00 34.37 4.24
2567 2710 0.956633 ATGCCAAACTGACACAGCTG 59.043 50.000 13.48 13.48 34.37 4.24
2568 2711 1.008079 GCCAAACTGACACAGCTGC 60.008 57.895 15.27 0.00 34.37 5.25
2569 2712 1.727511 GCCAAACTGACACAGCTGCA 61.728 55.000 15.27 2.62 34.37 4.41
2570 2713 0.309922 CCAAACTGACACAGCTGCAG 59.690 55.000 15.27 15.54 34.37 4.41
2571 2714 1.302366 CAAACTGACACAGCTGCAGA 58.698 50.000 20.43 1.62 34.37 4.26
2572 2715 1.003116 CAAACTGACACAGCTGCAGAC 60.003 52.381 20.43 9.11 34.37 3.51
2573 2716 0.467384 AACTGACACAGCTGCAGACT 59.533 50.000 20.43 11.55 34.37 3.24
2574 2717 0.249784 ACTGACACAGCTGCAGACTG 60.250 55.000 26.43 26.43 41.08 3.51
2575 2718 0.033090 CTGACACAGCTGCAGACTGA 59.967 55.000 31.54 16.28 38.55 3.41
2576 2719 0.465287 TGACACAGCTGCAGACTGAA 59.535 50.000 31.54 17.56 38.55 3.02
2577 2720 1.146637 GACACAGCTGCAGACTGAAG 58.853 55.000 31.54 25.71 38.55 3.02
2578 2721 0.755079 ACACAGCTGCAGACTGAAGA 59.245 50.000 31.54 0.00 38.55 2.87
2579 2722 1.347050 ACACAGCTGCAGACTGAAGAT 59.653 47.619 31.54 4.71 38.55 2.40
2580 2723 1.732809 CACAGCTGCAGACTGAAGATG 59.267 52.381 31.54 24.38 44.77 2.90
2581 2724 1.338864 ACAGCTGCAGACTGAAGATGG 60.339 52.381 31.54 13.38 43.57 3.51
2582 2725 0.392729 AGCTGCAGACTGAAGATGGC 60.393 55.000 20.43 0.00 0.00 4.40
2583 2726 0.675837 GCTGCAGACTGAAGATGGCA 60.676 55.000 20.43 0.00 0.00 4.92
2584 2727 1.817357 CTGCAGACTGAAGATGGCAA 58.183 50.000 8.42 0.00 0.00 4.52
2585 2728 1.467734 CTGCAGACTGAAGATGGCAAC 59.532 52.381 8.42 0.00 0.00 4.17
2586 2729 0.445436 GCAGACTGAAGATGGCAACG 59.555 55.000 6.65 0.00 42.51 4.10
2587 2730 1.941209 GCAGACTGAAGATGGCAACGA 60.941 52.381 6.65 0.00 42.51 3.85
2588 2731 2.625737 CAGACTGAAGATGGCAACGAT 58.374 47.619 0.00 0.00 42.51 3.73
2589 2732 2.350804 CAGACTGAAGATGGCAACGATG 59.649 50.000 0.00 0.00 42.51 3.84
2590 2733 2.027745 AGACTGAAGATGGCAACGATGT 60.028 45.455 0.00 0.00 42.51 3.06
2591 2734 2.079158 ACTGAAGATGGCAACGATGTG 58.921 47.619 0.00 0.00 42.51 3.21
2592 2735 0.804364 TGAAGATGGCAACGATGTGC 59.196 50.000 0.00 0.00 44.14 4.57
2593 2736 0.247814 GAAGATGGCAACGATGTGCG 60.248 55.000 0.00 0.00 45.91 5.34
2594 2737 2.257286 AAGATGGCAACGATGTGCGC 62.257 55.000 0.00 0.00 45.91 6.09
2595 2738 3.037992 GATGGCAACGATGTGCGCA 62.038 57.895 5.66 5.66 45.91 6.09
2596 2739 2.526091 GATGGCAACGATGTGCGCAA 62.526 55.000 14.00 2.60 45.91 4.85
2597 2740 1.936436 ATGGCAACGATGTGCGCAAT 61.936 50.000 14.00 8.37 45.91 3.56
2598 2741 2.153945 GGCAACGATGTGCGCAATG 61.154 57.895 14.00 4.56 45.91 2.82
2599 2742 2.153945 GCAACGATGTGCGCAATGG 61.154 57.895 14.00 12.02 46.04 3.16
2600 2743 1.514657 CAACGATGTGCGCAATGGG 60.515 57.895 14.00 4.75 46.04 4.00
2601 2744 2.699768 AACGATGTGCGCAATGGGG 61.700 57.895 14.00 3.07 46.04 4.96
2602 2745 3.133464 CGATGTGCGCAATGGGGT 61.133 61.111 14.00 0.00 0.00 4.95
2603 2746 2.491152 GATGTGCGCAATGGGGTG 59.509 61.111 14.00 0.00 0.00 4.61
2604 2747 2.035469 ATGTGCGCAATGGGGTGA 59.965 55.556 14.00 0.00 0.00 4.02
2605 2748 1.594194 GATGTGCGCAATGGGGTGAA 61.594 55.000 14.00 0.00 0.00 3.18
2606 2749 1.597797 ATGTGCGCAATGGGGTGAAG 61.598 55.000 14.00 0.00 0.00 3.02
2607 2750 2.676121 TGCGCAATGGGGTGAAGG 60.676 61.111 8.16 0.00 0.00 3.46
2608 2751 2.676471 GCGCAATGGGGTGAAGGT 60.676 61.111 0.30 0.00 0.00 3.50
2609 2752 2.993471 GCGCAATGGGGTGAAGGTG 61.993 63.158 0.30 0.00 0.00 4.00
2610 2753 2.342650 CGCAATGGGGTGAAGGTGG 61.343 63.158 0.00 0.00 0.00 4.61
2611 2754 2.649129 GCAATGGGGTGAAGGTGGC 61.649 63.158 0.00 0.00 0.00 5.01
2612 2755 1.077265 CAATGGGGTGAAGGTGGCT 59.923 57.895 0.00 0.00 0.00 4.75
2613 2756 1.077265 AATGGGGTGAAGGTGGCTG 59.923 57.895 0.00 0.00 0.00 4.85
2614 2757 1.729267 AATGGGGTGAAGGTGGCTGT 61.729 55.000 0.00 0.00 0.00 4.40
2615 2758 1.729267 ATGGGGTGAAGGTGGCTGTT 61.729 55.000 0.00 0.00 0.00 3.16
2616 2759 1.152546 GGGGTGAAGGTGGCTGTTT 60.153 57.895 0.00 0.00 0.00 2.83
2617 2760 1.179174 GGGGTGAAGGTGGCTGTTTC 61.179 60.000 0.00 0.00 0.00 2.78
2618 2761 1.179174 GGGTGAAGGTGGCTGTTTCC 61.179 60.000 0.00 0.00 0.00 3.13
2619 2762 1.515521 GGTGAAGGTGGCTGTTTCCG 61.516 60.000 0.00 0.00 0.00 4.30
2620 2763 0.534203 GTGAAGGTGGCTGTTTCCGA 60.534 55.000 0.00 0.00 0.00 4.55
2621 2764 0.400213 TGAAGGTGGCTGTTTCCGAT 59.600 50.000 0.00 0.00 0.00 4.18
2622 2765 0.804989 GAAGGTGGCTGTTTCCGATG 59.195 55.000 0.00 0.00 0.00 3.84
2623 2766 0.110486 AAGGTGGCTGTTTCCGATGT 59.890 50.000 0.00 0.00 0.00 3.06
2624 2767 0.321653 AGGTGGCTGTTTCCGATGTC 60.322 55.000 0.00 0.00 0.00 3.06
2625 2768 1.305930 GGTGGCTGTTTCCGATGTCC 61.306 60.000 0.00 0.00 0.00 4.02
2626 2769 1.375396 TGGCTGTTTCCGATGTCCG 60.375 57.895 0.00 0.00 38.18 4.79
2636 2779 3.340727 CGATGTCCGGGAGTACAAC 57.659 57.895 0.00 0.00 33.91 3.32
2637 2780 0.179119 CGATGTCCGGGAGTACAACC 60.179 60.000 0.00 0.00 33.91 3.77
2638 2781 0.177373 GATGTCCGGGAGTACAACCC 59.823 60.000 15.45 15.45 43.57 4.11
2639 2782 1.269703 ATGTCCGGGAGTACAACCCC 61.270 60.000 18.34 13.25 44.09 4.95
2640 2783 1.611556 GTCCGGGAGTACAACCCCT 60.612 63.158 18.34 0.00 44.09 4.79
2641 2784 1.611261 TCCGGGAGTACAACCCCTG 60.611 63.158 18.34 11.23 44.09 4.45
2642 2785 1.916777 CCGGGAGTACAACCCCTGT 60.917 63.158 18.34 0.00 44.09 4.00
2643 2786 1.295423 CGGGAGTACAACCCCTGTG 59.705 63.158 18.34 5.00 44.09 3.66
2644 2787 1.683441 GGGAGTACAACCCCTGTGG 59.317 63.158 14.77 0.00 41.38 4.17
2655 2798 2.781681 CCCCTGTGGTAGTTACCTTG 57.218 55.000 9.58 0.75 46.58 3.61
2656 2799 1.982958 CCCCTGTGGTAGTTACCTTGT 59.017 52.381 9.58 0.00 46.58 3.16
2657 2800 2.374170 CCCCTGTGGTAGTTACCTTGTT 59.626 50.000 9.58 0.00 46.58 2.83
2658 2801 3.558533 CCCCTGTGGTAGTTACCTTGTTC 60.559 52.174 9.58 0.00 46.58 3.18
2659 2802 3.326880 CCCTGTGGTAGTTACCTTGTTCT 59.673 47.826 9.58 0.00 46.58 3.01
2660 2803 4.315803 CCTGTGGTAGTTACCTTGTTCTG 58.684 47.826 9.58 1.16 46.58 3.02
2661 2804 4.315803 CTGTGGTAGTTACCTTGTTCTGG 58.684 47.826 9.58 0.00 46.58 3.86
2662 2805 3.968649 TGTGGTAGTTACCTTGTTCTGGA 59.031 43.478 9.58 0.00 46.58 3.86
2663 2806 4.409574 TGTGGTAGTTACCTTGTTCTGGAA 59.590 41.667 9.58 0.00 46.58 3.53
2664 2807 4.753610 GTGGTAGTTACCTTGTTCTGGAAC 59.246 45.833 9.58 6.53 46.58 3.62
2665 2808 4.657039 TGGTAGTTACCTTGTTCTGGAACT 59.343 41.667 13.54 0.00 46.58 3.01
2666 2809 5.221581 TGGTAGTTACCTTGTTCTGGAACTC 60.222 44.000 13.54 0.00 46.58 3.01
2667 2810 5.011840 GGTAGTTACCTTGTTCTGGAACTCT 59.988 44.000 13.54 4.97 43.10 3.24
2668 2811 4.962155 AGTTACCTTGTTCTGGAACTCTG 58.038 43.478 13.54 5.47 41.67 3.35
2669 2812 2.938956 ACCTTGTTCTGGAACTCTGG 57.061 50.000 13.54 13.55 41.67 3.86
2670 2813 1.421646 ACCTTGTTCTGGAACTCTGGG 59.578 52.381 13.54 11.65 41.67 4.45
2671 2814 1.271597 CCTTGTTCTGGAACTCTGGGG 60.272 57.143 13.54 5.96 41.67 4.96
2672 2815 1.699634 CTTGTTCTGGAACTCTGGGGA 59.300 52.381 13.54 0.00 41.67 4.81
2673 2816 1.814429 TGTTCTGGAACTCTGGGGAA 58.186 50.000 13.54 0.00 41.67 3.97
2674 2817 1.420138 TGTTCTGGAACTCTGGGGAAC 59.580 52.381 13.54 0.00 41.67 3.62
2675 2818 1.700186 GTTCTGGAACTCTGGGGAACT 59.300 52.381 6.26 0.00 38.25 3.01
2676 2819 2.106684 GTTCTGGAACTCTGGGGAACTT 59.893 50.000 6.26 0.00 38.25 2.66
2677 2820 1.699634 TCTGGAACTCTGGGGAACTTG 59.300 52.381 0.00 0.00 0.00 3.16
2678 2821 1.699634 CTGGAACTCTGGGGAACTTGA 59.300 52.381 0.00 0.00 0.00 3.02
2679 2822 1.699634 TGGAACTCTGGGGAACTTGAG 59.300 52.381 0.00 0.00 36.33 3.02
2680 2823 1.611936 GGAACTCTGGGGAACTTGAGC 60.612 57.143 0.00 0.00 34.60 4.26
2681 2824 0.402121 AACTCTGGGGAACTTGAGCC 59.598 55.000 0.00 0.00 34.60 4.70
2682 2825 0.768221 ACTCTGGGGAACTTGAGCCA 60.768 55.000 0.00 0.00 34.60 4.75
2683 2826 0.401738 CTCTGGGGAACTTGAGCCAA 59.598 55.000 0.00 0.00 0.00 4.52
2684 2827 0.401738 TCTGGGGAACTTGAGCCAAG 59.598 55.000 11.87 11.87 45.85 3.61
2685 2828 0.401738 CTGGGGAACTTGAGCCAAGA 59.598 55.000 18.22 0.00 43.42 3.02
2686 2829 0.401738 TGGGGAACTTGAGCCAAGAG 59.598 55.000 18.22 0.00 43.42 2.85
2687 2830 0.962855 GGGGAACTTGAGCCAAGAGC 60.963 60.000 18.22 10.67 43.42 4.09
2705 2848 4.918201 GGAAGGCGAGGATGGCGG 62.918 72.222 0.00 0.00 42.57 6.13
2706 2849 3.849951 GAAGGCGAGGATGGCGGA 61.850 66.667 0.00 0.00 42.57 5.54
2707 2850 3.798954 GAAGGCGAGGATGGCGGAG 62.799 68.421 0.00 0.00 42.57 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.900182 TGACCGCTGTCCTGTGATCT 60.900 55.000 5.77 0.00 41.01 2.75
23 24 0.687354 ATGTTCTTGACCGCTGTCCT 59.313 50.000 5.77 0.00 41.01 3.85
131 132 2.933495 TCGTCCGGATTAGTGTCAAG 57.067 50.000 7.81 0.00 0.00 3.02
206 208 3.202906 TGACGCTTTGTTTAGAACTGCT 58.797 40.909 0.00 0.00 0.00 4.24
227 229 1.423584 TCACATGTAGATCCCGCCAT 58.576 50.000 0.00 0.00 0.00 4.40
250 252 5.261209 CTTCAGAAGCAGCTATGTACTCT 57.739 43.478 0.00 0.00 0.00 3.24
322 324 2.764010 TGGTCCTGATGCACTACGTATT 59.236 45.455 0.00 0.00 0.00 1.89
327 329 3.266510 TCATTGGTCCTGATGCACTAC 57.733 47.619 0.00 0.00 0.00 2.73
748 751 9.589461 AAGTAAGGCATACTAGTGACTATATGT 57.411 33.333 5.39 6.23 44.22 2.29
1011 1015 5.006068 CACACATGATCGTACATCTTTGAGG 59.994 44.000 0.00 0.00 0.00 3.86
1016 1020 3.860641 TGCACACATGATCGTACATCTT 58.139 40.909 0.00 0.00 0.00 2.40
1058 1062 9.918630 CAATTCTCAGATATTTCAAGTTTGGTT 57.081 29.630 0.00 0.00 0.00 3.67
1258 1262 1.383664 CAGCTCCATCCTCTCCCCA 60.384 63.158 0.00 0.00 0.00 4.96
1334 1338 0.893727 ACCGTGGAGTTGCAATTCCC 60.894 55.000 31.33 22.65 34.17 3.97
1393 1397 1.071071 CTCCTTCAAACCGGTGGTGTA 59.929 52.381 8.52 2.46 35.34 2.90
1402 1406 5.010282 TCCTAAATTGAGCTCCTTCAAACC 58.990 41.667 12.15 0.00 40.21 3.27
1559 1563 1.768870 GCCCCTCTACATGGCTTAAGA 59.231 52.381 6.67 0.00 42.01 2.10
1678 1682 4.499183 GAAGTGTAGACATCCAGGTCTTG 58.501 47.826 0.00 0.00 45.59 3.02
1727 1733 0.803117 CAGCAGGCAGTGTTCAGATG 59.197 55.000 0.00 0.00 0.00 2.90
1778 1792 2.566952 AAGCGAATTATGGTTGCTGC 57.433 45.000 0.00 0.00 35.77 5.25
1805 1819 7.656707 ACCAATGGAATCAAAGAAAATTTCG 57.343 32.000 6.16 0.00 34.02 3.46
1809 1823 7.178983 TCTGCTACCAATGGAATCAAAGAAAAT 59.821 33.333 6.16 0.00 0.00 1.82
1814 1828 6.270815 CAATCTGCTACCAATGGAATCAAAG 58.729 40.000 6.16 0.00 0.00 2.77
1829 1844 4.693283 ACTTATACGCTTGCAATCTGCTA 58.307 39.130 0.00 0.00 45.31 3.49
1836 1851 9.497030 CAACAATAATAACTTATACGCTTGCAA 57.503 29.630 0.00 0.00 0.00 4.08
1857 1872 3.694072 ACACAAGCAACTTAGAGCAACAA 59.306 39.130 4.59 0.00 0.00 2.83
1902 1921 0.965439 TGGGGTTTACAGTGCAATGC 59.035 50.000 15.18 0.00 0.00 3.56
1903 1922 1.067635 GCTGGGGTTTACAGTGCAATG 60.068 52.381 13.51 13.51 38.22 2.82
1904 1923 1.203050 AGCTGGGGTTTACAGTGCAAT 60.203 47.619 0.00 0.00 38.22 3.56
1905 1924 0.184933 AGCTGGGGTTTACAGTGCAA 59.815 50.000 0.00 0.00 38.22 4.08
1906 1925 1.060729 TAGCTGGGGTTTACAGTGCA 58.939 50.000 0.00 0.00 38.22 4.57
1933 1952 7.893658 ACTCTAAGAGGAAAATTACGAGAACA 58.106 34.615 0.00 0.00 33.35 3.18
1993 2038 2.494059 GTAGCTCCTTGAACAAGCACA 58.506 47.619 8.81 0.00 38.51 4.57
2013 2058 0.035630 CAAGCTTCTCCTCCCACAGG 60.036 60.000 0.00 0.00 45.15 4.00
2030 2075 3.436470 GCCCCTTATGCCTTATCCTTCAA 60.436 47.826 0.00 0.00 0.00 2.69
2043 2088 2.134789 ACAGAGCTTTGCCCCTTATG 57.865 50.000 3.74 0.00 0.00 1.90
2044 2089 2.310052 AGAACAGAGCTTTGCCCCTTAT 59.690 45.455 3.74 0.00 0.00 1.73
2045 2090 1.705186 AGAACAGAGCTTTGCCCCTTA 59.295 47.619 3.74 0.00 0.00 2.69
2046 2091 0.480252 AGAACAGAGCTTTGCCCCTT 59.520 50.000 3.74 0.00 0.00 3.95
2047 2092 0.251077 CAGAACAGAGCTTTGCCCCT 60.251 55.000 3.74 0.00 0.00 4.79
2048 2093 0.538287 ACAGAACAGAGCTTTGCCCC 60.538 55.000 3.74 0.00 0.00 5.80
2049 2094 0.595095 CACAGAACAGAGCTTTGCCC 59.405 55.000 3.74 0.00 0.00 5.36
2054 2099 3.332919 CAGTATGCACAGAACAGAGCTT 58.667 45.455 0.00 0.00 0.00 3.74
2071 2116 8.318412 TGAGACAAGAGTATTTTTATGGCAGTA 58.682 33.333 0.00 0.00 0.00 2.74
2072 2117 7.168219 TGAGACAAGAGTATTTTTATGGCAGT 58.832 34.615 0.00 0.00 0.00 4.40
2091 2187 2.293170 TGCACCAAACGAAATGAGACA 58.707 42.857 0.00 0.00 0.00 3.41
2092 2188 3.042887 GTTGCACCAAACGAAATGAGAC 58.957 45.455 0.00 0.00 0.00 3.36
2111 2207 2.309613 TCATTCACCAGCTTGCTTGTT 58.690 42.857 0.00 0.00 0.00 2.83
2130 2226 4.102649 CCCAAAGAAAAACACGACACTTC 58.897 43.478 0.00 0.00 0.00 3.01
2135 2231 2.459934 CTGCCCAAAGAAAAACACGAC 58.540 47.619 0.00 0.00 0.00 4.34
2215 2311 5.046663 ACATGGGTTTTAATACAGCAAAGGG 60.047 40.000 0.00 0.00 0.00 3.95
2234 2330 4.183101 ACAAAACTGAAAGCAACACATGG 58.817 39.130 0.00 0.00 37.60 3.66
2261 2357 2.823154 CAGCCCCAAGTTCGGAAATAAA 59.177 45.455 0.00 0.00 0.00 1.40
2269 2365 2.045926 CCTCCAGCCCCAAGTTCG 60.046 66.667 0.00 0.00 0.00 3.95
2284 2380 1.545651 GGTTCAGTACAGCAAAGGCCT 60.546 52.381 0.00 0.00 42.56 5.19
2290 2386 4.039852 TGTCATACAGGTTCAGTACAGCAA 59.960 41.667 0.00 0.00 0.00 3.91
2308 2404 2.925724 TCAAAGAACCAACCGTGTCAT 58.074 42.857 0.00 0.00 0.00 3.06
2349 2445 6.662865 TTCAAGGACTAAAATCATGCCAAA 57.337 33.333 0.00 0.00 0.00 3.28
2364 2460 5.006386 AGTTCATCACTTCCATTCAAGGAC 58.994 41.667 0.00 0.00 37.42 3.85
2415 2511 3.599343 TGCACTGTAGCAAAGTATCAGG 58.401 45.455 3.08 0.00 42.46 3.86
2435 2531 3.476552 AGTTCACCAGGTTACACATGTG 58.523 45.455 24.25 24.25 0.00 3.21
2546 2689 0.953727 GCTGTGTCAGTTTGGCATCA 59.046 50.000 0.00 0.00 33.03 3.07
2547 2690 1.068748 CAGCTGTGTCAGTTTGGCATC 60.069 52.381 5.25 0.00 33.03 3.91
2548 2691 0.956633 CAGCTGTGTCAGTTTGGCAT 59.043 50.000 5.25 0.00 33.03 4.40
2549 2692 1.727511 GCAGCTGTGTCAGTTTGGCA 61.728 55.000 16.64 0.00 33.43 4.92
2550 2693 1.008079 GCAGCTGTGTCAGTTTGGC 60.008 57.895 16.64 0.00 33.43 4.52
2551 2694 0.309922 CTGCAGCTGTGTCAGTTTGG 59.690 55.000 16.64 0.00 33.43 3.28
2552 2695 1.003116 GTCTGCAGCTGTGTCAGTTTG 60.003 52.381 16.64 0.00 33.43 2.93
2553 2696 1.134280 AGTCTGCAGCTGTGTCAGTTT 60.134 47.619 16.64 4.62 33.43 2.66
2554 2697 0.467384 AGTCTGCAGCTGTGTCAGTT 59.533 50.000 16.64 4.95 33.43 3.16
2555 2698 0.249784 CAGTCTGCAGCTGTGTCAGT 60.250 55.000 22.41 1.22 33.43 3.41
2556 2699 0.033090 TCAGTCTGCAGCTGTGTCAG 59.967 55.000 26.61 14.07 35.60 3.51
2557 2700 0.465287 TTCAGTCTGCAGCTGTGTCA 59.535 50.000 26.61 12.78 35.60 3.58
2558 2701 1.146637 CTTCAGTCTGCAGCTGTGTC 58.853 55.000 26.61 6.77 35.60 3.67
2559 2702 0.755079 TCTTCAGTCTGCAGCTGTGT 59.245 50.000 26.61 3.41 35.60 3.72
2560 2703 1.732809 CATCTTCAGTCTGCAGCTGTG 59.267 52.381 26.61 21.77 35.60 3.66
2561 2704 1.338864 CCATCTTCAGTCTGCAGCTGT 60.339 52.381 26.61 12.78 35.60 4.40
2562 2705 1.370609 CCATCTTCAGTCTGCAGCTG 58.629 55.000 23.86 23.86 35.43 4.24
2563 2706 0.392729 GCCATCTTCAGTCTGCAGCT 60.393 55.000 9.47 6.85 0.00 4.24
2564 2707 0.675837 TGCCATCTTCAGTCTGCAGC 60.676 55.000 9.47 4.26 0.00 5.25
2565 2708 1.467734 GTTGCCATCTTCAGTCTGCAG 59.532 52.381 7.63 7.63 0.00 4.41
2566 2709 1.527034 GTTGCCATCTTCAGTCTGCA 58.473 50.000 0.00 0.00 0.00 4.41
2567 2710 0.445436 CGTTGCCATCTTCAGTCTGC 59.555 55.000 0.00 0.00 0.00 4.26
2568 2711 2.084610 TCGTTGCCATCTTCAGTCTG 57.915 50.000 0.00 0.00 0.00 3.51
2569 2712 2.027745 ACATCGTTGCCATCTTCAGTCT 60.028 45.455 0.00 0.00 0.00 3.24
2570 2713 2.094894 CACATCGTTGCCATCTTCAGTC 59.905 50.000 0.00 0.00 0.00 3.51
2571 2714 2.079158 CACATCGTTGCCATCTTCAGT 58.921 47.619 0.00 0.00 0.00 3.41
2572 2715 1.202110 GCACATCGTTGCCATCTTCAG 60.202 52.381 0.00 0.00 36.42 3.02
2573 2716 0.804364 GCACATCGTTGCCATCTTCA 59.196 50.000 0.00 0.00 36.42 3.02
2574 2717 0.247814 CGCACATCGTTGCCATCTTC 60.248 55.000 0.00 0.00 39.53 2.87
2575 2718 1.796151 CGCACATCGTTGCCATCTT 59.204 52.632 0.00 0.00 39.53 2.40
2576 2719 2.753966 GCGCACATCGTTGCCATCT 61.754 57.895 0.30 0.00 39.53 2.90
2577 2720 2.277501 GCGCACATCGTTGCCATC 60.278 61.111 0.30 0.00 39.53 3.51
2578 2721 1.936436 ATTGCGCACATCGTTGCCAT 61.936 50.000 11.12 0.00 39.53 4.40
2579 2722 2.624868 ATTGCGCACATCGTTGCCA 61.625 52.632 11.12 0.00 39.53 4.92
2580 2723 2.153945 CATTGCGCACATCGTTGCC 61.154 57.895 11.12 0.00 39.53 4.52
2581 2724 2.153945 CCATTGCGCACATCGTTGC 61.154 57.895 11.12 0.00 41.07 4.17
2582 2725 1.514657 CCCATTGCGCACATCGTTG 60.515 57.895 11.12 0.88 41.07 4.10
2583 2726 2.699768 CCCCATTGCGCACATCGTT 61.700 57.895 11.12 0.00 41.07 3.85
2584 2727 3.133464 CCCCATTGCGCACATCGT 61.133 61.111 11.12 0.00 41.07 3.73
2585 2728 3.133464 ACCCCATTGCGCACATCG 61.133 61.111 11.12 0.00 42.12 3.84
2586 2729 1.594194 TTCACCCCATTGCGCACATC 61.594 55.000 11.12 0.00 0.00 3.06
2587 2730 1.597797 CTTCACCCCATTGCGCACAT 61.598 55.000 11.12 4.17 0.00 3.21
2588 2731 2.203408 TTCACCCCATTGCGCACA 60.203 55.556 11.12 1.31 0.00 4.57
2589 2732 2.568090 CTTCACCCCATTGCGCAC 59.432 61.111 11.12 0.00 0.00 5.34
2590 2733 2.676121 CCTTCACCCCATTGCGCA 60.676 61.111 5.66 5.66 0.00 6.09
2591 2734 2.676471 ACCTTCACCCCATTGCGC 60.676 61.111 0.00 0.00 0.00 6.09
2592 2735 2.342650 CCACCTTCACCCCATTGCG 61.343 63.158 0.00 0.00 0.00 4.85
2593 2736 2.649129 GCCACCTTCACCCCATTGC 61.649 63.158 0.00 0.00 0.00 3.56
2594 2737 1.077265 AGCCACCTTCACCCCATTG 59.923 57.895 0.00 0.00 0.00 2.82
2595 2738 1.077265 CAGCCACCTTCACCCCATT 59.923 57.895 0.00 0.00 0.00 3.16
2596 2739 1.729267 AACAGCCACCTTCACCCCAT 61.729 55.000 0.00 0.00 0.00 4.00
2597 2740 1.943730 AAACAGCCACCTTCACCCCA 61.944 55.000 0.00 0.00 0.00 4.96
2598 2741 1.152546 AAACAGCCACCTTCACCCC 60.153 57.895 0.00 0.00 0.00 4.95
2599 2742 1.179174 GGAAACAGCCACCTTCACCC 61.179 60.000 0.00 0.00 0.00 4.61
2600 2743 1.515521 CGGAAACAGCCACCTTCACC 61.516 60.000 0.00 0.00 0.00 4.02
2601 2744 0.534203 TCGGAAACAGCCACCTTCAC 60.534 55.000 0.00 0.00 0.00 3.18
2602 2745 0.400213 ATCGGAAACAGCCACCTTCA 59.600 50.000 0.00 0.00 0.00 3.02
2603 2746 0.804989 CATCGGAAACAGCCACCTTC 59.195 55.000 0.00 0.00 0.00 3.46
2604 2747 0.110486 ACATCGGAAACAGCCACCTT 59.890 50.000 0.00 0.00 0.00 3.50
2605 2748 0.321653 GACATCGGAAACAGCCACCT 60.322 55.000 0.00 0.00 0.00 4.00
2606 2749 1.305930 GGACATCGGAAACAGCCACC 61.306 60.000 0.00 0.00 0.00 4.61
2607 2750 1.635663 CGGACATCGGAAACAGCCAC 61.636 60.000 0.00 0.00 34.75 5.01
2608 2751 1.375396 CGGACATCGGAAACAGCCA 60.375 57.895 0.00 0.00 34.75 4.75
2609 2752 3.486263 CGGACATCGGAAACAGCC 58.514 61.111 0.00 0.00 34.75 4.85
2618 2761 0.179119 GGTTGTACTCCCGGACATCG 60.179 60.000 0.73 0.00 38.88 3.84
2619 2762 0.177373 GGGTTGTACTCCCGGACATC 59.823 60.000 0.73 0.00 35.27 3.06
2620 2763 1.269703 GGGGTTGTACTCCCGGACAT 61.270 60.000 0.73 0.00 45.46 3.06
2621 2764 1.914764 GGGGTTGTACTCCCGGACA 60.915 63.158 0.73 0.00 45.46 4.02
2622 2765 1.611556 AGGGGTTGTACTCCCGGAC 60.612 63.158 0.73 0.00 40.56 4.79
2623 2766 1.611261 CAGGGGTTGTACTCCCGGA 60.611 63.158 0.73 0.00 40.56 5.14
2624 2767 1.916777 ACAGGGGTTGTACTCCCGG 60.917 63.158 16.48 15.36 40.56 5.73
2625 2768 1.295423 CACAGGGGTTGTACTCCCG 59.705 63.158 16.48 12.12 40.56 5.14
2626 2769 1.683441 CCACAGGGGTTGTACTCCC 59.317 63.158 15.29 15.29 40.56 4.30
2639 2782 9.521701 AGTTCCAGAACAAGGTAACTACCACAG 62.522 44.444 12.76 0.63 44.94 3.66
2640 2783 7.823725 AGTTCCAGAACAAGGTAACTACCACA 61.824 42.308 12.76 0.00 44.94 4.17
2641 2784 5.454329 AGTTCCAGAACAAGGTAACTACCAC 60.454 44.000 12.76 0.00 44.94 4.16
2642 2785 4.657039 AGTTCCAGAACAAGGTAACTACCA 59.343 41.667 12.76 0.00 44.94 3.25
2643 2786 5.011840 AGAGTTCCAGAACAAGGTAACTACC 59.988 44.000 12.76 0.00 44.94 3.18
2644 2787 5.927115 CAGAGTTCCAGAACAAGGTAACTAC 59.073 44.000 12.76 0.00 44.94 2.73
2645 2788 5.011738 CCAGAGTTCCAGAACAAGGTAACTA 59.988 44.000 12.76 0.00 44.94 2.24
2646 2789 4.202367 CCAGAGTTCCAGAACAAGGTAACT 60.202 45.833 12.76 0.00 44.26 2.24
2647 2790 4.065789 CCAGAGTTCCAGAACAAGGTAAC 58.934 47.826 12.76 0.00 43.47 2.50
2648 2791 3.072476 CCCAGAGTTCCAGAACAAGGTAA 59.928 47.826 12.76 0.00 43.47 2.85
2649 2792 2.637872 CCCAGAGTTCCAGAACAAGGTA 59.362 50.000 12.76 0.00 43.47 3.08
2650 2793 1.421646 CCCAGAGTTCCAGAACAAGGT 59.578 52.381 12.76 0.00 43.47 3.50
2651 2794 1.271597 CCCCAGAGTTCCAGAACAAGG 60.272 57.143 12.76 10.17 43.47 3.61
2652 2795 1.699634 TCCCCAGAGTTCCAGAACAAG 59.300 52.381 12.76 2.37 43.47 3.16
2653 2796 1.814429 TCCCCAGAGTTCCAGAACAA 58.186 50.000 12.76 0.00 43.47 2.83
2654 2797 1.420138 GTTCCCCAGAGTTCCAGAACA 59.580 52.381 12.76 0.00 43.47 3.18
2655 2798 1.700186 AGTTCCCCAGAGTTCCAGAAC 59.300 52.381 2.19 2.19 41.45 3.01
2656 2799 2.106511 CAAGTTCCCCAGAGTTCCAGAA 59.893 50.000 0.00 0.00 0.00 3.02
2657 2800 1.699634 CAAGTTCCCCAGAGTTCCAGA 59.300 52.381 0.00 0.00 0.00 3.86
2658 2801 1.699634 TCAAGTTCCCCAGAGTTCCAG 59.300 52.381 0.00 0.00 0.00 3.86
2659 2802 1.699634 CTCAAGTTCCCCAGAGTTCCA 59.300 52.381 0.00 0.00 0.00 3.53
2660 2803 1.611936 GCTCAAGTTCCCCAGAGTTCC 60.612 57.143 0.00 0.00 0.00 3.62
2661 2804 1.611936 GGCTCAAGTTCCCCAGAGTTC 60.612 57.143 0.00 0.00 0.00 3.01
2662 2805 0.402121 GGCTCAAGTTCCCCAGAGTT 59.598 55.000 0.00 0.00 0.00 3.01
2663 2806 0.768221 TGGCTCAAGTTCCCCAGAGT 60.768 55.000 0.00 0.00 0.00 3.24
2664 2807 0.401738 TTGGCTCAAGTTCCCCAGAG 59.598 55.000 0.00 0.00 0.00 3.35
2665 2808 0.401738 CTTGGCTCAAGTTCCCCAGA 59.598 55.000 6.74 0.00 36.79 3.86
2666 2809 0.401738 TCTTGGCTCAAGTTCCCCAG 59.598 55.000 12.71 0.00 41.66 4.45
2667 2810 0.401738 CTCTTGGCTCAAGTTCCCCA 59.598 55.000 12.71 0.00 41.66 4.96
2668 2811 0.962855 GCTCTTGGCTCAAGTTCCCC 60.963 60.000 12.71 0.00 41.66 4.81
2669 2812 1.301677 CGCTCTTGGCTCAAGTTCCC 61.302 60.000 12.71 2.75 41.66 3.97
2670 2813 1.301677 CCGCTCTTGGCTCAAGTTCC 61.302 60.000 12.71 4.52 41.66 3.62
2671 2814 0.320771 TCCGCTCTTGGCTCAAGTTC 60.321 55.000 12.71 6.85 41.66 3.01
2672 2815 0.108585 TTCCGCTCTTGGCTCAAGTT 59.891 50.000 12.71 0.00 41.66 2.66
2673 2816 0.321122 CTTCCGCTCTTGGCTCAAGT 60.321 55.000 12.71 0.00 41.66 3.16
2674 2817 1.023513 CCTTCCGCTCTTGGCTCAAG 61.024 60.000 8.22 8.22 42.25 3.02
2675 2818 1.003355 CCTTCCGCTCTTGGCTCAA 60.003 57.895 0.00 0.00 39.13 3.02
2676 2819 2.665000 CCTTCCGCTCTTGGCTCA 59.335 61.111 0.00 0.00 39.13 4.26
2677 2820 2.821810 GCCTTCCGCTCTTGGCTC 60.822 66.667 0.00 0.00 41.92 4.70
2678 2821 4.767255 CGCCTTCCGCTCTTGGCT 62.767 66.667 0.00 0.00 42.90 4.75
2679 2822 4.760047 TCGCCTTCCGCTCTTGGC 62.760 66.667 0.00 0.00 41.76 4.52
2680 2823 2.510238 CTCGCCTTCCGCTCTTGG 60.510 66.667 0.00 0.00 36.73 3.61
2681 2824 2.303549 ATCCTCGCCTTCCGCTCTTG 62.304 60.000 0.00 0.00 36.73 3.02
2682 2825 2.060980 ATCCTCGCCTTCCGCTCTT 61.061 57.895 0.00 0.00 36.73 2.85
2683 2826 2.443016 ATCCTCGCCTTCCGCTCT 60.443 61.111 0.00 0.00 36.73 4.09
2684 2827 2.279784 CATCCTCGCCTTCCGCTC 60.280 66.667 0.00 0.00 36.73 5.03
2685 2828 3.854669 CCATCCTCGCCTTCCGCT 61.855 66.667 0.00 0.00 36.73 5.52
2688 2831 4.918201 CCGCCATCCTCGCCTTCC 62.918 72.222 0.00 0.00 0.00 3.46
2689 2832 3.798954 CTCCGCCATCCTCGCCTTC 62.799 68.421 0.00 0.00 0.00 3.46
2690 2833 3.854669 CTCCGCCATCCTCGCCTT 61.855 66.667 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.