AutoCloner

Multiple sequence alignment - TraesCS3B01G082300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G082300	chr3B	100.000	3596	0	0	1	3596	51943438	51947033	0.000000e+00	6641.0
1	TraesCS3B01G082300	chr3B	95.035	1974	59	21	1628	3596	51225942	51227881	0.000000e+00	3066.0
2	TraesCS3B01G082300	chr3B	95.062	729	20	5	2870	3596	52435355	52436069	0.000000e+00	1133.0
3	TraesCS3B01G082300	chr3B	90.798	815	41	14	850	1631	51224970	51225783	0.000000e+00	1059.0
4	TraesCS3B01G082300	chr3B	83.141	1216	89	43	1315	2432	52430678	52431875	0.000000e+00	1003.0
5	TraesCS3B01G082300	chr3B	83.161	1063	110	37	1083	2084	496063058	496064112	0.000000e+00	907.0
6	TraesCS3B01G082300	chr3B	82.599	931	78	33	2300	3166	51731278	51732188	0.000000e+00	745.0
7	TraesCS3B01G082300	chr3B	86.677	653	51	12	2967	3596	52779034	52778395	0.000000e+00	691.0
8	TraesCS3B01G082300	chr3B	81.706	891	106	29	1	851	51222428	51223301	0.000000e+00	689.0
9	TraesCS3B01G082300	chr3B	90.713	463	25	8	2428	2878	52434716	52435172	5.140000e-168	601.0
10	TraesCS3B01G082300	chr3B	86.242	298	16	17	2544	2827	52787076	52786790	2.100000e-77	300.0
11	TraesCS3B01G082300	chr3B	87.970	266	11	10	980	1241	52430403	52430651	9.760000e-76	294.0
12	TraesCS3B01G082300	chr3B	76.522	575	104	22	6	560	136103993	136103430	5.880000e-73	285.0
13	TraesCS3B01G082300	chr3B	74.770	543	105	24	47	563	222321679	222321143	7.820000e-52	215.0
14	TraesCS3B01G082300	chr3B	97.959	98	2	0	3490	3587	51770854	51770951	1.720000e-38	171.0
15	TraesCS3B01G082300	chr3B	90.909	55	5	0	2213	2267	52788645	52788591	1.380000e-09	75.0
16	TraesCS3B01G082300	chr3D	84.703	2896	218	84	1	2759	29966537	29969344	0.000000e+00	2686.0
17	TraesCS3B01G082300	chr3D	87.241	290	33	3	3221	3510	30063790	30064075	9.630000e-86	327.0
18	TraesCS3B01G082300	chr3D	88.593	263	20	7	2498	2759	30063090	30063343	9.690000e-81	311.0
19	TraesCS3B01G082300	chr3D	75.779	578	103	27	3	561	355793974	355794533	1.280000e-64	257.0
20	TraesCS3B01G082300	chr3D	86.321	212	10	5	2973	3166	30063491	30063701	2.810000e-51	213.0
21	TraesCS3B01G082300	chr3D	79.608	255	28	10	2827	3062	29969442	29969691	1.030000e-35	161.0
22	TraesCS3B01G082300	chr3A	91.612	1061	48	10	2307	3354	40915053	40916085	0.000000e+00	1428.0
23	TraesCS3B01G082300	chr3A	85.540	982	77	30	686	1628	40913082	40914037	0.000000e+00	966.0
24	TraesCS3B01G082300	chr3A	82.308	650	59	32	2447	3062	41602366	41602993	2.480000e-141	512.0
25	TraesCS3B01G082300	chr3A	85.714	343	35	5	3255	3590	41628639	41628974	2.050000e-92	350.0
26	TraesCS3B01G082300	chr3A	89.259	270	11	7	1628	1897	40914201	40914452	4.480000e-84	322.0
27	TraesCS3B01G082300	chr3A	83.508	382	21	10	2823	3167	41628232	41628608	5.790000e-83	318.0
28	TraesCS3B01G082300	chr3A	88.931	262	21	5	2498	2759	41627884	41628137	2.080000e-82	316.0
29	TraesCS3B01G082300	chr3A	76.603	577	105	24	3	560	579647850	579648415	1.260000e-74	291.0
30	TraesCS3B01G082300	chr3A	86.939	245	8	6	2091	2311	40914650	40914894	1.660000e-63	254.0
31	TraesCS3B01G082300	chr3A	83.636	275	27	7	2417	2688	41281456	41281715	3.590000e-60	243.0
32	TraesCS3B01G082300	chr3A	92.357	157	9	2	1933	2086	40914448	40914604	1.680000e-53	220.0
33	TraesCS3B01G082300	chr3A	74.704	423	85	12	29	430	703403570	703403149	6.170000e-38	169.0
34	TraesCS3B01G082300	chr3A	75.275	182	37	5	136	311	143228036	143228215	2.980000e-11	80.5
35	TraesCS3B01G082300	chr2D	77.414	580	99	25	3	561	579071612	579072180	2.080000e-82	316.0
36	TraesCS3B01G082300	chr1D	76.976	582	94	32	3	561	430064052	430064616	2.710000e-76	296.0
37	TraesCS3B01G082300	chr1D	75.397	504	80	33	84	560	446004724	446005210	1.690000e-48	204.0
38	TraesCS3B01G082300	chr7D	76.511	579	109	21	6	566	638315454	638314885	1.260000e-74	291.0
39	TraesCS3B01G082300	chr7D	76.000	500	88	23	83	561	260010706	260011194	2.790000e-56	230.0
40	TraesCS3B01G082300	chr7D	73.929	560	110	25	32	561	636774743	636775296	3.660000e-45	193.0
41	TraesCS3B01G082300	chr7D	76.702	382	65	18	189	560	226115459	226115092	1.320000e-44	191.0
42	TraesCS3B01G082300	chr6A	76.250	560	101	24	29	563	340380796	340380244	5.920000e-68	268.0
43	TraesCS3B01G082300	chr7B	75.758	528	85	26	6	515	594058905	594058403	3.610000e-55	226.0
44	TraesCS3B01G082300	chr7A	75.534	421	83	15	29	430	90129862	90129443	4.740000e-44	189.0
45	TraesCS3B01G082300	chr4A	91.667	60	3	2	1417	1475	410040607	410040665	8.270000e-12	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G082300	chr3B	51943438	51947033	3595	False	6641.000000	6641	100.000000	1	3596	1	chr3B.!!$F3	3595
1	TraesCS3B01G082300	chr3B	51222428	51227881	5453	False	1604.666667	3066	89.179667	1	3596	3	chr3B.!!$F5	3595
2	TraesCS3B01G082300	chr3B	496063058	496064112	1054	False	907.000000	907	83.161000	1083	2084	1	chr3B.!!$F4	1001
3	TraesCS3B01G082300	chr3B	52430403	52436069	5666	False	757.750000	1133	89.221500	980	3596	4	chr3B.!!$F6	2616
4	TraesCS3B01G082300	chr3B	51731278	51732188	910	False	745.000000	745	82.599000	2300	3166	1	chr3B.!!$F1	866
5	TraesCS3B01G082300	chr3B	52778395	52779034	639	True	691.000000	691	86.677000	2967	3596	1	chr3B.!!$R1	629
6	TraesCS3B01G082300	chr3B	136103430	136103993	563	True	285.000000	285	76.522000	6	560	1	chr3B.!!$R2	554
7	TraesCS3B01G082300	chr3B	222321143	222321679	536	True	215.000000	215	74.770000	47	563	1	chr3B.!!$R3	516
8	TraesCS3B01G082300	chr3D	29966537	29969691	3154	False	1423.500000	2686	82.155500	1	3062	2	chr3D.!!$F2	3061
9	TraesCS3B01G082300	chr3D	30063090	30064075	985	False	283.666667	327	87.385000	2498	3510	3	chr3D.!!$F3	1012
10	TraesCS3B01G082300	chr3D	355793974	355794533	559	False	257.000000	257	75.779000	3	561	1	chr3D.!!$F1	558
11	TraesCS3B01G082300	chr3A	40913082	40916085	3003	False	638.000000	1428	89.141400	686	3354	5	chr3A.!!$F5	2668
12	TraesCS3B01G082300	chr3A	41602366	41602993	627	False	512.000000	512	82.308000	2447	3062	1	chr3A.!!$F2	615
13	TraesCS3B01G082300	chr3A	41627884	41628974	1090	False	328.000000	350	86.051000	2498	3590	3	chr3A.!!$F6	1092
14	TraesCS3B01G082300	chr3A	579647850	579648415	565	False	291.000000	291	76.603000	3	560	1	chr3A.!!$F4	557
15	TraesCS3B01G082300	chr2D	579071612	579072180	568	False	316.000000	316	77.414000	3	561	1	chr2D.!!$F1	558
16	TraesCS3B01G082300	chr1D	430064052	430064616	564	False	296.000000	296	76.976000	3	561	1	chr1D.!!$F1	558
17	TraesCS3B01G082300	chr7D	638314885	638315454	569	True	291.000000	291	76.511000	6	566	1	chr7D.!!$R2	560
18	TraesCS3B01G082300	chr6A	340380244	340380796	552	True	268.000000	268	76.250000	29	563	1	chr6A.!!$R1	534
19	TraesCS3B01G082300	chr7B	594058403	594058905	502	True	226.000000	226	75.758000	6	515	1	chr7B.!!$R1	509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
593	634	0.949105	AGTACAAAGCGGGTCAAGCG	60.949	55.0	0.0	0.0	40.04	4.68	F
1771	3946	0.543749	CTTCCCCTGTGCCTCCTTAG	59.456	60.0	0.0	0.0	0.00	2.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1979	4171	0.811281	AAATAAACTGGAGCCGCTGC	59.189	50.0	4.68	4.68	37.95	5.25	R
3458	9119	1.024271	GTGAACAAGAAGCAGTGCCA	58.976	50.0	12.58	0.00	0.00	4.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
196	222	5.283457	AGGGTCTGTCTGATTATGCTAAC	57.717	43.478	0.00	0.00	0.00	2.34
197	223	4.716784	AGGGTCTGTCTGATTATGCTAACA	59.283	41.667	0.00	0.00	0.00	2.41
206	233	7.094377	TGTCTGATTATGCTAACAAAAAGGGAC	60.094	37.037	0.00	0.00	0.00	4.46
220	250	1.826385	AGGGACTTATGTGCTGCAAC	58.174	50.000	2.77	0.00	27.25	4.17
242	272	7.461107	CAACTAGTAATCCATTTGGTTACGTG	58.539	38.462	0.00	11.66	37.07	4.49
245	275	4.698304	AGTAATCCATTTGGTTACGTGGTG	59.302	41.667	0.00	0.00	37.07	4.17
258	288	3.361281	ACGTGGTGATAGGAGAGTGTA	57.639	47.619	0.00	0.00	0.00	2.90
412	446	2.549064	TATCAAGACATCATGGGCCG	57.451	50.000	0.00	0.00	0.00	6.13
433	467	1.519455	CATGACCCGCGAGAAGACC	60.519	63.158	8.23	0.00	0.00	3.85
451	485	2.335712	CCCCAACTCCTCGCTTTGC	61.336	63.158	0.00	0.00	0.00	3.68
456	490	3.494336	CTCCTCGCTTTGCTGCCG	61.494	66.667	0.00	0.00	0.00	5.69
471	505	2.434884	CCGCACTGCCGTGAAGAT	60.435	61.111	12.93	0.00	43.97	2.40
473	507	1.421485	CGCACTGCCGTGAAGATTC	59.579	57.895	12.93	0.00	43.97	2.52
474	508	1.796796	GCACTGCCGTGAAGATTCC	59.203	57.895	12.93	0.00	43.97	3.01
489	524	6.599244	GTGAAGATTCCTTTGATGGACACATA	59.401	38.462	0.00	0.00	35.58	2.29
502	537	7.154656	TGATGGACACATAAATTATCTCTCCG	58.845	38.462	0.00	0.00	37.47	4.63
566	607	9.081997	GCATGAGTATATGTGCTAGTAAAGATC	57.918	37.037	0.00	0.00	34.85	2.75
585	626	1.296056	CCACCGGAAGTACAAAGCGG	61.296	60.000	9.46	0.00	0.00	5.52
586	627	1.004200	ACCGGAAGTACAAAGCGGG	60.004	57.895	9.46	0.00	0.00	6.13
591	632	1.804748	GGAAGTACAAAGCGGGTCAAG	59.195	52.381	0.00	0.00	0.00	3.02
593	634	0.949105	AGTACAAAGCGGGTCAAGCG	60.949	55.000	0.00	0.00	40.04	4.68
601	642	2.004733	AGCGGGTCAAGCGTAATAAAC	58.995	47.619	0.00	0.00	40.04	2.01
602	643	1.733360	GCGGGTCAAGCGTAATAAACA	59.267	47.619	0.00	0.00	0.00	2.83
620	661	8.433421	AATAAACATTACATCGAGGTAGTTGG	57.567	34.615	19.62	10.68	0.00	3.77
636	677	1.680735	GTTGGTGACATGTTTCCTGCA	59.319	47.619	17.13	0.99	42.32	4.41
642	683	2.158623	TGACATGTTTCCTGCACTTCCT	60.159	45.455	0.00	0.00	0.00	3.36
644	685	4.263462	TGACATGTTTCCTGCACTTCCTAT	60.263	41.667	0.00	0.00	0.00	2.57
652	693	2.945668	CCTGCACTTCCTATAAACTGGC	59.054	50.000	0.00	0.00	0.00	4.85
672	722	2.159379	GCCAGGCATTTTTACTTCTCGG	60.159	50.000	6.55	0.00	0.00	4.63
737	790	5.298026	TGACGATGTTTCATCAGTTCCAAAA	59.702	36.000	9.81	0.00	0.00	2.44
1179	2942	4.280425	CCTCCTCATCTGATTCGAGATTCA	59.720	45.833	6.58	0.00	29.72	2.57
1304	3073	3.354467	ACTGTACACTCTGGTAGTAGCC	58.646	50.000	0.00	0.00	35.76	3.93
1310	3079	2.024305	CTGGTAGTAGCCGACGCG	59.976	66.667	3.53	3.53	41.18	6.01
1382	3156	6.032717	GCTCCTATCATCAAAGCTGAAAAAC	58.967	40.000	0.00	0.00	34.49	2.43
1546	3360	6.654122	GCTATGTAGCTTTCTGCATCTTAAC	58.346	40.000	4.81	0.00	43.21	2.01
1547	3361	5.725110	ATGTAGCTTTCTGCATCTTAACG	57.275	39.130	0.00	0.00	40.91	3.18
1569	3385	2.279935	TGCCAAACCGTAAACCTGAT	57.720	45.000	0.00	0.00	0.00	2.90
1586	3402	6.313519	ACCTGATAACAAGAATTAGGCTGA	57.686	37.500	0.00	0.00	34.30	4.26
1606	3422	5.006165	GCTGAGCAATGTACTCTGTATGTTC	59.994	44.000	0.00	0.00	36.00	3.18
1612	3428	8.914011	AGCAATGTACTCTGTATGTTCTACATA	58.086	33.333	0.00	0.00	39.88	2.29
1736	3907	7.449704	GCTGAATTTTCCATATCCCACTTCTAT	59.550	37.037	0.00	0.00	0.00	1.98
1771	3946	0.543749	CTTCCCCTGTGCCTCCTTAG	59.456	60.000	0.00	0.00	0.00	2.18
2072	4278	8.200364	AGTTTGGTTTCTGTTTCATTCATTTG	57.800	30.769	0.00	0.00	0.00	2.32
2104	4357	7.419711	TCTAGGATTTGTCCGAAGTTCTATT	57.580	36.000	0.56	0.00	34.28	1.73
2195	4471	1.572415	ACTGAATGCTGGGGATGGAAT	59.428	47.619	0.00	0.00	0.00	3.01
2658	7969	5.899120	CAAGTGTGCTCTAGTTACCTCTA	57.101	43.478	0.00	0.00	0.00	2.43
2957	8528	1.035139	AACTGAGGGCTTTGCTGTTG	58.965	50.000	0.00	0.00	0.00	3.33
3251	8900	1.412710	TCCTCGAGTGTGCTTTTCACT	59.587	47.619	12.31	0.00	46.86	3.41
3259	8908	3.319122	AGTGTGCTTTTCACTGATTTCCC	59.681	43.478	0.00	0.00	45.81	3.97
3278	8927	3.887110	TCCCGAAGATATTGTTCGCTCTA	59.113	43.478	13.14	0.12	44.37	2.43
3292	8941	5.186021	TGTTCGCTCTATTCTTCCTCTTCTT	59.814	40.000	0.00	0.00	0.00	2.52
3458	9119	0.908910	TGATCTGTATTGCGGTGGGT	59.091	50.000	0.00	0.00	0.00	4.51
3470	9131	2.113986	GTGGGTGGCACTGCTTCT	59.886	61.111	18.45	0.00	0.00	2.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
169	179	5.663106	AGCATAATCAGACAGACCCTTCTTA	59.337	40.000	0.00	0.00	0.00	2.10
196	222	3.005684	TGCAGCACATAAGTCCCTTTTTG	59.994	43.478	0.00	0.00	0.00	2.44
197	223	3.230134	TGCAGCACATAAGTCCCTTTTT	58.770	40.909	0.00	0.00	0.00	1.94
206	233	5.817296	TGGATTACTAGTTGCAGCACATAAG	59.183	40.000	0.00	0.00	0.00	1.73
220	250	6.036735	CACCACGTAACCAAATGGATTACTAG	59.963	42.308	6.42	6.51	38.94	2.57
242	272	4.202070	GCTTGACTACACTCTCCTATCACC	60.202	50.000	0.00	0.00	0.00	4.02
245	275	5.344884	GTTGCTTGACTACACTCTCCTATC	58.655	45.833	0.00	0.00	0.00	2.08
295	326	2.035442	GGCTGCCTCCTCGTTTCAC	61.035	63.158	12.43	0.00	0.00	3.18
296	327	2.347490	GGCTGCCTCCTCGTTTCA	59.653	61.111	12.43	0.00	0.00	2.69
412	446	0.108804	TCTTCTCGCGGGTCATGTTC	60.109	55.000	5.57	0.00	0.00	3.18
433	467	2.335712	GCAAAGCGAGGAGTTGGGG	61.336	63.158	0.00	0.00	0.00	4.96
471	505	9.699410	AGATAATTTATGTGTCCATCAAAGGAA	57.301	29.630	0.00	0.00	39.92	3.36
473	507	9.347240	AGAGATAATTTATGTGTCCATCAAAGG	57.653	33.333	0.00	0.00	32.29	3.11
489	524	5.694006	CGAGAAGCAATCGGAGAGATAATTT	59.306	40.000	0.00	0.00	43.63	1.82
566	607	1.296056	CCGCTTTGTACTTCCGGTGG	61.296	60.000	0.00	0.00	34.56	4.61
601	642	4.804139	GTCACCAACTACCTCGATGTAATG	59.196	45.833	2.14	4.66	0.00	1.90
602	643	4.464951	TGTCACCAACTACCTCGATGTAAT	59.535	41.667	2.14	0.00	0.00	1.89
620	661	2.030805	GGAAGTGCAGGAAACATGTCAC	60.031	50.000	0.00	1.50	0.00	3.67
636	677	2.092375	GCCTGGCCAGTTTATAGGAAGT	60.092	50.000	30.63	0.00	0.00	3.01
642	683	5.955355	AGTAAAAATGCCTGGCCAGTTTATA	59.045	36.000	30.63	15.03	32.54	0.98
644	685	4.156477	AGTAAAAATGCCTGGCCAGTTTA	58.844	39.130	30.63	23.02	32.54	2.01
652	693	3.343617	TCCGAGAAGTAAAAATGCCTGG	58.656	45.455	0.00	0.00	0.00	4.45
672	722	8.154649	TGTTTAACTTCAGAGTTTGAATCCTC	57.845	34.615	0.00	0.00	43.48	3.71
802	871	2.202492	CGAAGGCGAGGTCGAGTG	60.202	66.667	2.94	0.00	43.02	3.51
880	2631	9.642343	GGGTGGTAAATAAGAGAAGGAATTAAT	57.358	33.333	0.00	0.00	0.00	1.40
881	2632	8.057011	GGGGTGGTAAATAAGAGAAGGAATTAA	58.943	37.037	0.00	0.00	0.00	1.40
882	2633	7.184936	TGGGGTGGTAAATAAGAGAAGGAATTA	59.815	37.037	0.00	0.00	0.00	1.40
1044	2799	4.373116	GAGTTGGCGGCGTCCTGA	62.373	66.667	9.84	1.16	0.00	3.86
1179	2942	1.741770	GAAACAGGGCGCATCGACT	60.742	57.895	10.83	0.00	34.07	4.18
1304	3073	0.229753	GATTTCCTACATGCGCGTCG	59.770	55.000	8.43	0.00	0.00	5.12
1382	3156	9.893305	AAATCAATTTTACTCGTTTAGTCAAGG	57.107	29.630	0.00	0.00	39.80	3.61
1538	3352	2.223249	CGGTTTGGCATCCGTTAAGATG	60.223	50.000	18.92	1.29	45.37	2.90
1547	3361	1.201414	CAGGTTTACGGTTTGGCATCC	59.799	52.381	0.00	0.00	0.00	3.51
1569	3385	5.945784	ACATTGCTCAGCCTAATTCTTGTTA	59.054	36.000	0.00	0.00	0.00	2.41
1586	3402	7.170393	TGTAGAACATACAGAGTACATTGCT	57.830	36.000	0.00	0.00	0.00	3.91
1612	3428	7.665559	TCTGCTGTTTAGAAGTTCCACAAATAT	59.334	33.333	0.00	0.00	30.91	1.28
1736	3907	3.438183	GGGAAGTCAGAGGGTACAGTTA	58.562	50.000	0.00	0.00	0.00	2.24
1771	3946	0.820226	GAAAGGCCTGAGGATTTGCC	59.180	55.000	5.69	0.00	44.35	4.52
1798	3975	1.703014	GGAGGATGAGCATGGGAGCA	61.703	60.000	0.00	0.00	36.85	4.26
1799	3976	1.072852	GGAGGATGAGCATGGGAGC	59.927	63.158	0.00	0.00	0.00	4.70
1891	4077	3.201290	CATAGGGATCAGTGCACTTCAC	58.799	50.000	18.94	15.00	45.98	3.18
1898	4084	6.072452	GGCTAATTTAACATAGGGATCAGTGC	60.072	42.308	0.00	0.00	0.00	4.40
1979	4171	0.811281	AAATAAACTGGAGCCGCTGC	59.189	50.000	4.68	4.68	37.95	5.25
1980	4172	4.900635	AATAAATAAACTGGAGCCGCTG	57.099	40.909	0.00	0.00	0.00	5.18
1981	4173	5.914898	AAAATAAATAAACTGGAGCCGCT	57.085	34.783	0.00	0.00	0.00	5.52
1982	4174	5.290885	CCAAAAATAAATAAACTGGAGCCGC	59.709	40.000	0.00	0.00	0.00	6.53
1983	4175	6.394809	ACCAAAAATAAATAAACTGGAGCCG	58.605	36.000	0.00	0.00	0.00	5.52
2072	4278	5.717119	TCGGACAAATCCTAGAACTTGTAC	58.283	41.667	0.00	0.00	43.73	2.90
2104	4357	6.328148	TCCAGTCTTTAAACTTGGAGGTTCTA	59.672	38.462	6.51	0.00	0.00	2.10
2195	4471	3.499563	CCCAACCCTCCACATTGTCTTTA	60.500	47.826	0.00	0.00	0.00	1.85
2658	7969	4.600111	TGAGGTTCAACTTGGGGTTACTAT	59.400	41.667	0.00	0.00	36.23	2.12
2957	8528	6.038714	GCATATATATACTGGAAAGCCAAGCC	59.961	42.308	0.00	0.00	45.41	4.35
3251	8900	4.272504	GCGAACAATATCTTCGGGAAATCA	59.727	41.667	14.20	0.00	40.71	2.57
3259	8908	7.148885	GGAAGAATAGAGCGAACAATATCTTCG	60.149	40.741	9.94	9.94	42.78	3.79
3278	8927	5.070981	TCTGTGTGTGAAGAAGAGGAAGAAT	59.929	40.000	0.00	0.00	0.00	2.40
3292	8941	4.331968	ACAAACTTTTCCTCTGTGTGTGA	58.668	39.130	0.00	0.00	31.69	3.58
3332	8981	1.070105	CAACGGGGAAGGAACGACA	59.930	57.895	0.00	0.00	0.00	4.35
3458	9119	1.024271	GTGAACAAGAAGCAGTGCCA	58.976	50.000	12.58	0.00	0.00	4.92
3510	9171	5.011090	CTGCTTCTACACCTGCAGTATTA	57.989	43.478	13.81	0.00	45.31	0.98
3511	9172	3.866651	CTGCTTCTACACCTGCAGTATT	58.133	45.455	13.81	0.00	45.31	1.89

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.