Multiple sequence alignment - TraesCS3B01G081400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G081400 chr3B 100.000 3377 0 0 1 3377 51243017 51246393 0.000000e+00 6237
1 TraesCS3B01G081400 chr3B 87.087 3121 378 22 254 3364 52853778 52850673 0.000000e+00 3507
2 TraesCS3B01G081400 chr3B 85.752 3046 416 16 327 3364 52426330 52429365 0.000000e+00 3205
3 TraesCS3B01G081400 chr3B 84.778 3160 437 36 229 3369 52777840 52774706 0.000000e+00 3131
4 TraesCS3B01G081400 chr3B 86.092 2725 359 15 648 3364 52551643 52554355 0.000000e+00 2915
5 TraesCS3B01G081400 chr3B 94.962 655 31 1 126 780 51958315 51958967 0.000000e+00 1026
6 TraesCS3B01G081400 chr3B 98.611 72 1 0 1 72 51958246 51958317 9.840000e-26 128
7 TraesCS3B01G081400 chr3A 86.922 3311 406 21 71 3364 41047849 41051149 0.000000e+00 3690
8 TraesCS3B01G081400 chr3A 85.469 3200 430 31 197 3376 41149838 41153022 0.000000e+00 3301
9 TraesCS3B01G081400 chr3A 84.483 3364 476 36 13 3364 41536936 41540265 0.000000e+00 3278
10 TraesCS3B01G081400 chr3A 83.903 3187 492 19 188 3364 40936241 40939416 0.000000e+00 3024
11 TraesCS3B01G081400 chr3D 85.625 3360 443 28 19 3363 30006413 30009747 0.000000e+00 3493


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G081400 chr3B 51243017 51246393 3376 False 6237 6237 100.0000 1 3377 1 chr3B.!!$F1 3376
1 TraesCS3B01G081400 chr3B 52850673 52853778 3105 True 3507 3507 87.0870 254 3364 1 chr3B.!!$R2 3110
2 TraesCS3B01G081400 chr3B 52426330 52429365 3035 False 3205 3205 85.7520 327 3364 1 chr3B.!!$F2 3037
3 TraesCS3B01G081400 chr3B 52774706 52777840 3134 True 3131 3131 84.7780 229 3369 1 chr3B.!!$R1 3140
4 TraesCS3B01G081400 chr3B 52551643 52554355 2712 False 2915 2915 86.0920 648 3364 1 chr3B.!!$F3 2716
5 TraesCS3B01G081400 chr3B 51958246 51958967 721 False 577 1026 96.7865 1 780 2 chr3B.!!$F4 779
6 TraesCS3B01G081400 chr3A 41047849 41051149 3300 False 3690 3690 86.9220 71 3364 1 chr3A.!!$F2 3293
7 TraesCS3B01G081400 chr3A 41149838 41153022 3184 False 3301 3301 85.4690 197 3376 1 chr3A.!!$F3 3179
8 TraesCS3B01G081400 chr3A 41536936 41540265 3329 False 3278 3278 84.4830 13 3364 1 chr3A.!!$F4 3351
9 TraesCS3B01G081400 chr3A 40936241 40939416 3175 False 3024 3024 83.9030 188 3364 1 chr3A.!!$F1 3176
10 TraesCS3B01G081400 chr3D 30006413 30009747 3334 False 3493 3493 85.6250 19 3363 1 chr3D.!!$F1 3344

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 907 0.033601 TTGGTGGACTTGGTGCTTGT 60.034 50.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2607 2637 1.134907 TGCCGACCGAAGAATCCTAAC 60.135 52.381 0.0 0.0 0.0 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 5.798934 GCACAAGCAGATAAAATGACAGAAG 59.201 40.000 0.00 0.00 41.58 2.85
118 119 3.356529 AGACCTCAATACTTGGCCTTG 57.643 47.619 3.32 0.00 0.00 3.61
119 120 2.025887 AGACCTCAATACTTGGCCTTGG 60.026 50.000 3.32 0.00 0.00 3.61
120 121 1.992557 ACCTCAATACTTGGCCTTGGA 59.007 47.619 3.32 0.00 0.00 3.53
123 124 1.992557 TCAATACTTGGCCTTGGACCT 59.007 47.619 3.32 0.00 0.00 3.85
125 126 1.668826 ATACTTGGCCTTGGACCTCA 58.331 50.000 3.32 0.00 0.00 3.86
271 282 6.239008 CCTTTTGCCATTCTCTGAAACAAGTA 60.239 38.462 0.00 0.00 0.00 2.24
567 580 4.455533 TGATGTTGAAGAAATCTTGGACGG 59.544 41.667 0.00 0.00 36.11 4.79
573 586 1.913419 AGAAATCTTGGACGGGGCTAA 59.087 47.619 0.00 0.00 0.00 3.09
616 629 1.504912 CTGACCACCCTCCATCATCT 58.495 55.000 0.00 0.00 0.00 2.90
736 752 9.823098 CTCAACAAGAAGATAGAGAACATTTTG 57.177 33.333 0.00 0.00 0.00 2.44
737 753 8.292448 TCAACAAGAAGATAGAGAACATTTTGC 58.708 33.333 0.00 0.00 0.00 3.68
803 819 3.802866 GGAAATGGTCCAAAGTGCAAAA 58.197 40.909 0.00 0.00 46.97 2.44
890 907 0.033601 TTGGTGGACTTGGTGCTTGT 60.034 50.000 0.00 0.00 0.00 3.16
1001 1018 5.880901 TCAGAAAGTTAAAGGAGGCTTCAT 58.119 37.500 0.00 0.00 0.00 2.57
1032 1049 5.159209 GCATGGATTTCTGTTTCACAAGAG 58.841 41.667 0.00 0.00 0.00 2.85
1047 1064 5.839621 TCACAAGAGTACAGTGAAGTAACC 58.160 41.667 0.00 0.00 39.15 2.85
1134 1151 1.196354 CAGAGGAAGCTTGCAGAAACG 59.804 52.381 20.82 0.00 0.00 3.60
1152 1169 3.679824 ACGATCGAAGGGAAGAGTTTT 57.320 42.857 24.34 0.00 0.00 2.43
1177 1194 8.595362 TTTTCTAGTTCTAGATGATGTCTGGA 57.405 34.615 9.88 0.00 42.05 3.86
1230 1253 5.622914 GCCTGCATTACATGAAACAACATCT 60.623 40.000 0.00 0.00 0.00 2.90
1248 1271 7.494625 ACAACATCTGGAGTAATATTGGTAACG 59.505 37.037 0.00 0.00 42.51 3.18
1252 1275 7.172868 TCTGGAGTAATATTGGTAACGACAA 57.827 36.000 0.00 0.00 42.51 3.18
1287 1310 9.838339 CAAATTACAAGGAGAATAGGTGTAGAT 57.162 33.333 0.00 0.00 0.00 1.98
1394 1418 4.819630 AGTGCAGAATTTAAGAAACACGGA 59.180 37.500 0.00 0.00 32.22 4.69
1416 1440 6.195165 GGAGATTGAGATTGTTCGTAAATGC 58.805 40.000 0.00 0.00 0.00 3.56
1695 1719 0.972471 TCATCGAGGAGCAGCAAGGA 60.972 55.000 0.00 0.00 0.00 3.36
1756 1780 4.156922 AGCTAATACATCGGAATCTCCTCG 59.843 45.833 0.00 0.00 33.30 4.63
1777 1801 8.262227 TCCTCGAGCCAGATATTTTAAGTTTTA 58.738 33.333 6.99 0.00 0.00 1.52
2026 2053 8.150296 TCGAGGATGCATTATTCAAGAGATTTA 58.850 33.333 0.00 0.00 0.00 1.40
2053 2080 4.882427 TCCTTCGTGTTTTGGTATTGAACA 59.118 37.500 0.00 0.00 0.00 3.18
2054 2081 5.008217 TCCTTCGTGTTTTGGTATTGAACAG 59.992 40.000 0.00 0.00 34.29 3.16
2237 2264 1.896220 TCAGCAATGACCCTGTTGAC 58.104 50.000 0.00 0.00 30.20 3.18
2242 2269 2.154462 CAATGACCCTGTTGACCAGTC 58.846 52.381 0.00 0.00 39.74 3.51
2244 2271 1.507140 TGACCCTGTTGACCAGTCTT 58.493 50.000 0.00 0.00 39.74 3.01
2261 2288 8.367660 ACCAGTCTTAGATGTCTTGATCTTTA 57.632 34.615 0.00 0.00 34.42 1.85
2284 2311 8.592809 TTTATGGCACAGAAATAAATCAGGTTT 58.407 29.630 0.00 0.00 45.03 3.27
2287 2314 6.095377 GGCACAGAAATAAATCAGGTTTCAG 58.905 40.000 0.00 0.00 35.00 3.02
2325 2352 5.234543 ACTGAAGTTTCTCACTCGTTTAAGC 59.765 40.000 0.00 0.00 32.94 3.09
2328 2355 3.734735 AGTTTCTCACTCGTTTAAGCGAC 59.265 43.478 10.56 0.00 36.80 5.19
2376 2403 4.284829 TGCTGTTGTACAAGATGGATGA 57.715 40.909 8.98 0.00 0.00 2.92
2386 2413 6.775142 TGTACAAGATGGATGAAAGTTGGAAA 59.225 34.615 0.00 0.00 0.00 3.13
2411 2438 3.727726 TGTCTTCTTTGTCGCAGATGAA 58.272 40.909 0.00 0.00 40.67 2.57
2426 2453 6.092670 TCGCAGATGAAGTTTCTTTATCTTGG 59.907 38.462 12.04 8.50 0.00 3.61
2481 2508 1.859998 GCAGTGCTGACGGACAAAAAC 60.860 52.381 8.18 0.00 33.37 2.43
2514 2541 1.476085 CTAGCACTGGAGTGGAGTGAG 59.524 57.143 8.82 0.00 45.72 3.51
2532 2562 3.006323 GTGAGCGTGAGGGATCATATTCT 59.994 47.826 0.00 0.00 34.49 2.40
2561 2591 5.423886 AGAAGTTAGCAATACTGAGAAGGC 58.576 41.667 0.00 0.00 0.00 4.35
2562 2592 4.826274 AGTTAGCAATACTGAGAAGGCA 57.174 40.909 0.00 0.00 0.00 4.75
2569 2599 4.637534 GCAATACTGAGAAGGCATTTGAGA 59.362 41.667 0.00 0.00 0.00 3.27
2607 2637 4.192317 GCAACCTGGAAGACCTAAGTATG 58.808 47.826 0.00 0.00 34.07 2.39
2619 2649 9.752961 GAAGACCTAAGTATGTTAGGATTCTTC 57.247 37.037 19.94 19.94 43.24 2.87
2670 2700 6.331369 ACCACCTGTTTGTCTTCATTAATG 57.669 37.500 9.29 9.29 0.00 1.90
2672 2702 6.016276 ACCACCTGTTTGTCTTCATTAATGTC 60.016 38.462 14.97 5.76 0.00 3.06
2684 2714 5.178096 TCATTAATGTCCTTGCTCCTCAA 57.822 39.130 14.97 0.00 0.00 3.02
2798 2828 3.517296 TGGACCTGAATTTGTTGGCTA 57.483 42.857 0.00 0.00 0.00 3.93
2802 2832 4.220602 GGACCTGAATTTGTTGGCTACAAT 59.779 41.667 14.92 1.55 45.72 2.71
2812 2842 4.929479 TGTTGGCTACAATAAGGGTGATT 58.071 39.130 0.00 0.00 39.13 2.57
2817 2847 6.061441 TGGCTACAATAAGGGTGATTATGTG 58.939 40.000 0.00 0.00 0.00 3.21
2826 2856 9.693739 AATAAGGGTGATTATGTGTGTAATGAA 57.306 29.630 0.00 0.00 0.00 2.57
2832 2862 7.915397 GGTGATTATGTGTGTAATGAATTGGTC 59.085 37.037 0.00 0.00 0.00 4.02
2833 2863 8.458052 GTGATTATGTGTGTAATGAATTGGTCA 58.542 33.333 0.00 0.00 41.67 4.02
2851 2881 3.819337 GGTCACCTTCCCTAAACTTGAAC 59.181 47.826 0.00 0.00 0.00 3.18
2891 2921 2.589157 CCAACTGGGAGGCGTGGTA 61.589 63.158 0.00 0.00 40.01 3.25
2954 2984 1.140452 GGATGGAGCTGCTGAGATTCA 59.860 52.381 7.01 0.00 0.00 2.57
3004 3034 3.259425 CTGCTGCCTCGTTTGGTGC 62.259 63.158 0.00 0.00 0.00 5.01
3042 3072 2.591915 CCCGAAACTGAGGGCTCTA 58.408 57.895 0.00 0.00 41.34 2.43
3047 3077 0.984995 AAACTGAGGGCTCTACCACC 59.015 55.000 0.00 0.00 42.05 4.61
3049 3079 0.043334 ACTGAGGGCTCTACCACCAT 59.957 55.000 0.00 0.00 42.05 3.55
3068 3098 0.251653 TAGCTTGGAGAGGACACCGT 60.252 55.000 0.00 0.00 0.00 4.83
3082 3112 0.318441 CACCGTCAGCTTGAAGGAGA 59.682 55.000 19.32 0.00 46.88 3.71
3085 3115 1.472376 CCGTCAGCTTGAAGGAGATCC 60.472 57.143 10.94 0.00 46.88 3.36
3086 3116 3.796923 CCGTCAGCTTGAAGGAGATCCT 61.797 54.545 10.94 0.00 46.88 3.24
3192 3222 3.324246 GAGGATCTCCAACCTCCCA 57.676 57.895 0.00 0.00 44.70 4.37
3238 3268 4.730966 TGGTTGTCCAAACTTAAGCCATA 58.269 39.130 1.29 0.00 41.25 2.74
3253 3283 2.157786 AGCCATATAGAGGGGTTGGGAT 60.158 50.000 0.00 0.00 31.94 3.85
3307 3340 1.068921 GAGATCTCTTCCCGCTGGC 59.931 63.158 15.80 0.00 0.00 4.85
3334 3367 1.675801 CTCCAAGAGCAGCACCAGA 59.324 57.895 0.00 0.00 0.00 3.86
3340 3373 0.321021 AGAGCAGCACCAGAGACTTG 59.679 55.000 0.00 0.00 0.00 3.16
3342 3375 0.034616 AGCAGCACCAGAGACTTGAC 59.965 55.000 0.00 0.00 0.00 3.18
3364 3397 2.168728 GGTGAAGACCTGGATGTCTACC 59.831 54.545 0.00 0.00 44.68 3.18
3365 3398 2.832129 GTGAAGACCTGGATGTCTACCA 59.168 50.000 0.00 0.00 44.68 3.25
3373 3406 4.862902 CTGGATGTCTACCAGGTAGATG 57.137 50.000 28.82 13.13 45.21 2.90
3374 3407 3.576118 CTGGATGTCTACCAGGTAGATGG 59.424 52.174 28.82 13.37 45.21 3.51
3375 3408 2.300437 GGATGTCTACCAGGTAGATGGC 59.700 54.545 28.82 20.04 45.21 4.40
3376 3409 2.848678 TGTCTACCAGGTAGATGGCT 57.151 50.000 28.82 0.00 45.21 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.524316 TTTTATCTGCTTGTGCTTGCAT 57.476 36.364 0.00 0.00 38.59 3.96
81 82 2.644676 GTCTAAATCCCTGAGTTGGCC 58.355 52.381 0.00 0.00 0.00 5.36
118 119 2.620585 GGAGCTATGCAATTTGAGGTCC 59.379 50.000 15.10 15.10 46.15 4.46
119 120 3.282021 TGGAGCTATGCAATTTGAGGTC 58.718 45.455 0.00 4.15 36.04 3.85
120 121 3.370840 TGGAGCTATGCAATTTGAGGT 57.629 42.857 0.00 0.00 0.00 3.85
123 124 7.828508 AGAATAATGGAGCTATGCAATTTGA 57.171 32.000 0.00 0.00 0.00 2.69
567 580 5.047306 AGCTTGTTTCCTTTACATTTAGCCC 60.047 40.000 0.00 0.00 30.75 5.19
573 586 7.004691 AGGAAGTAGCTTGTTTCCTTTACATT 58.995 34.615 16.19 0.00 46.47 2.71
640 656 2.091885 ACAAGAGGAAACTGAAAGGCCA 60.092 45.455 5.01 0.00 44.43 5.36
736 752 8.613613 TGAATGTTAAAAATATCGTGTCATGC 57.386 30.769 0.00 0.00 0.00 4.06
795 811 5.012239 TGGAGCTTCTTATCATTTTGCACT 58.988 37.500 0.00 0.00 0.00 4.40
796 812 5.314923 TGGAGCTTCTTATCATTTTGCAC 57.685 39.130 0.00 0.00 0.00 4.57
798 814 6.803642 AGATTGGAGCTTCTTATCATTTTGC 58.196 36.000 9.47 0.00 0.00 3.68
803 819 7.114754 TCAACAAGATTGGAGCTTCTTATCAT 58.885 34.615 9.47 0.00 31.15 2.45
839 855 4.915809 TGGAATGTATGATCTCCTTCCCAT 59.084 41.667 12.99 0.00 32.90 4.00
890 907 7.575414 TTGTAAGACTTATTTTCCTTGTGCA 57.425 32.000 0.00 0.00 0.00 4.57
994 1011 1.265095 CCATGCGTGTATCATGAAGCC 59.735 52.381 0.00 0.00 42.84 4.35
1001 1018 3.872696 ACAGAAATCCATGCGTGTATCA 58.127 40.909 4.96 0.00 0.00 2.15
1047 1064 2.354203 CCGGAGAACCTCTTTCAGAAGG 60.354 54.545 0.00 0.00 36.57 3.46
1152 1169 8.595362 TCCAGACATCATCTAGAACTAGAAAA 57.405 34.615 14.25 7.16 44.44 2.29
1158 1175 6.385176 TGGAATTCCAGACATCATCTAGAACT 59.615 38.462 23.63 0.00 37.81 3.01
1230 1253 7.123098 TCTCTTGTCGTTACCAATATTACTCCA 59.877 37.037 0.00 0.00 0.00 3.86
1248 1271 8.498054 TCCTTGTAATTTGATCATCTCTTGTC 57.502 34.615 0.00 0.00 0.00 3.18
1287 1310 4.855715 GAGATCAACTCGATGGGTATGA 57.144 45.455 0.00 0.00 35.84 2.15
1394 1418 5.220662 CCGCATTTACGAACAATCTCAATCT 60.221 40.000 0.00 0.00 34.06 2.40
1416 1440 2.111999 TTGCAAGAGGGAGGTGACCG 62.112 60.000 0.00 0.00 0.00 4.79
1469 1493 4.720649 TTCCACTCATTCTCCGTTAGAG 57.279 45.455 0.00 0.00 44.75 2.43
1695 1719 8.972127 TCTTCTGCTATGTCTTCTATTAGTTGT 58.028 33.333 0.00 0.00 0.00 3.32
1756 1780 7.996385 TGGCTAAAACTTAAAATATCTGGCTC 58.004 34.615 0.00 0.00 0.00 4.70
1777 1801 2.029623 CATTTTGCATCTAGCCTGGCT 58.970 47.619 26.52 26.52 44.83 4.75
1932 1959 7.509659 ACTTCCACCTTATCCATACTAGGTAAG 59.490 40.741 0.00 0.00 38.93 2.34
2026 2053 1.981256 ACCAAAACACGAAGGAGCAT 58.019 45.000 0.00 0.00 0.00 3.79
2103 2130 6.583050 CAGTGTAATCTAGATTAAGTAGGCGC 59.417 42.308 23.61 16.70 35.30 6.53
2237 2264 9.258826 CATAAAGATCAAGACATCTAAGACTGG 57.741 37.037 0.00 0.00 32.46 4.00
2242 2269 7.496920 TGTGCCATAAAGATCAAGACATCTAAG 59.503 37.037 0.00 0.00 32.46 2.18
2244 2271 6.888105 TGTGCCATAAAGATCAAGACATCTA 58.112 36.000 0.00 0.00 32.46 1.98
2261 2288 6.211184 TGAAACCTGATTTATTTCTGTGCCAT 59.789 34.615 0.00 0.00 34.18 4.40
2284 2311 4.074799 TCAGTTTCCCTATCCCTTCTGA 57.925 45.455 0.00 0.00 0.00 3.27
2287 2314 4.846168 ACTTCAGTTTCCCTATCCCTTC 57.154 45.455 0.00 0.00 0.00 3.46
2310 2337 4.201891 GGATAGTCGCTTAAACGAGTGAGA 60.202 45.833 16.81 0.00 44.98 3.27
2325 2352 2.430694 TCCATCACCAACAGGATAGTCG 59.569 50.000 0.00 0.00 0.00 4.18
2328 2355 4.080919 TCACTTCCATCACCAACAGGATAG 60.081 45.833 0.00 0.00 0.00 2.08
2376 2403 7.441836 ACAAAGAAGACAACTTTTCCAACTTT 58.558 30.769 0.00 0.00 35.74 2.66
2386 2413 3.531538 TCTGCGACAAAGAAGACAACTT 58.468 40.909 0.00 0.00 39.24 2.66
2426 2453 4.457257 AGTGAGCTGCTCTTTCCAATTTAC 59.543 41.667 28.04 14.67 0.00 2.01
2514 2541 3.667497 TCAGAATATGATCCCTCACGC 57.333 47.619 0.00 0.00 33.22 5.34
2532 2562 7.896811 TCTCAGTATTGCTAACTTCTTCTTCA 58.103 34.615 0.00 0.00 0.00 3.02
2541 2571 4.826274 TGCCTTCTCAGTATTGCTAACT 57.174 40.909 0.00 0.00 0.00 2.24
2561 2591 5.235186 CGTGGAGGTATTAGCTTCTCAAATG 59.765 44.000 0.00 0.00 0.00 2.32
2562 2592 5.360591 CGTGGAGGTATTAGCTTCTCAAAT 58.639 41.667 0.00 0.00 0.00 2.32
2569 2599 2.629051 GTTGCGTGGAGGTATTAGCTT 58.371 47.619 0.00 0.00 0.00 3.74
2607 2637 1.134907 TGCCGACCGAAGAATCCTAAC 60.135 52.381 0.00 0.00 0.00 2.34
2670 2700 1.202818 ACACCTTTGAGGAGCAAGGAC 60.203 52.381 5.33 0.00 37.67 3.85
2672 2702 2.427506 GTACACCTTTGAGGAGCAAGG 58.572 52.381 0.07 0.00 37.67 3.61
2684 2714 2.289382 TGCACACATGATCGTACACCTT 60.289 45.455 0.00 0.00 0.00 3.50
2798 2828 8.902806 CATTACACACATAATCACCCTTATTGT 58.097 33.333 0.00 0.00 0.00 2.71
2802 2832 9.693739 AATTCATTACACACATAATCACCCTTA 57.306 29.630 0.00 0.00 0.00 2.69
2812 2842 6.480763 AGGTGACCAATTCATTACACACATA 58.519 36.000 3.63 0.00 36.32 2.29
2817 2847 4.157840 GGGAAGGTGACCAATTCATTACAC 59.842 45.833 3.63 0.00 36.32 2.90
2826 2856 4.105697 TCAAGTTTAGGGAAGGTGACCAAT 59.894 41.667 3.63 0.00 0.00 3.16
2832 2862 2.812011 CCGTTCAAGTTTAGGGAAGGTG 59.188 50.000 0.00 0.00 0.00 4.00
2833 2863 2.440627 ACCGTTCAAGTTTAGGGAAGGT 59.559 45.455 0.00 0.00 0.00 3.50
2851 2881 3.499918 GGCATATCCTTGAAGATCAACCG 59.500 47.826 0.00 0.00 32.21 4.44
2954 2984 5.378230 TGCAGATTGGACATCCTCTTTAT 57.622 39.130 0.00 0.00 36.82 1.40
3047 3077 1.202463 CGGTGTCCTCTCCAAGCTATG 60.202 57.143 0.00 0.00 0.00 2.23
3049 3079 0.251653 ACGGTGTCCTCTCCAAGCTA 60.252 55.000 0.00 0.00 0.00 3.32
3135 3165 4.657504 TCCACAATATCAAGGAGCTCAGAT 59.342 41.667 17.19 16.75 0.00 2.90
3149 3179 3.956199 CAGGCCTTCACAATCCACAATAT 59.044 43.478 0.00 0.00 0.00 1.28
3155 3185 0.329261 CTCCAGGCCTTCACAATCCA 59.671 55.000 0.00 0.00 0.00 3.41
3192 3222 2.923121 ACATGCAGTTCTGTCACTTGT 58.077 42.857 0.00 1.34 0.00 3.16
3238 3268 2.358195 GCAAACATCCCAACCCCTCTAT 60.358 50.000 0.00 0.00 0.00 1.98
3253 3283 2.913578 CCCCAGCTGCTGCAAACA 60.914 61.111 23.86 0.00 42.74 2.83
3307 3340 2.435586 CTCTTGGAGCCCACGCAG 60.436 66.667 0.00 0.00 37.52 5.18
3318 3351 0.673022 GTCTCTGGTGCTGCTCTTGG 60.673 60.000 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.