Multiple sequence alignment - TraesCS3B01G081100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G081100 chr3B 100.000 4148 0 0 1 4148 51158838 51162985 0.000000e+00 7661.0
1 TraesCS3B01G081100 chr3B 85.701 2189 260 30 1193 3335 51149022 51151203 0.000000e+00 2259.0
2 TraesCS3B01G081100 chr3B 86.814 1949 237 8 1193 3128 51143639 51145580 0.000000e+00 2158.0
3 TraesCS3B01G081100 chr3B 87.770 139 13 2 657 795 549763172 549763038 4.290000e-35 159.0
4 TraesCS3B01G081100 chr3B 77.083 144 23 7 3983 4116 593876231 593876088 1.600000e-09 75.0
5 TraesCS3B01G081100 chr3A 95.360 2694 119 2 436 3126 40870798 40873488 0.000000e+00 4277.0
6 TraesCS3B01G081100 chr3A 85.232 2194 263 31 1193 3335 40864249 40866432 0.000000e+00 2200.0
7 TraesCS3B01G081100 chr3A 87.186 1951 229 9 1193 3128 40859311 40861255 0.000000e+00 2198.0
8 TraesCS3B01G081100 chr3A 88.165 583 35 15 3471 4036 40873952 40874517 0.000000e+00 664.0
9 TraesCS3B01G081100 chr3A 90.000 340 27 4 3149 3481 40873545 40873884 2.290000e-117 433.0
10 TraesCS3B01G081100 chr3A 85.174 344 48 1 808 1148 40858965 40859308 2.370000e-92 350.0
11 TraesCS3B01G081100 chr3A 88.846 260 15 8 106 364 40870552 40870798 1.450000e-79 307.0
12 TraesCS3B01G081100 chr3A 92.079 101 7 1 1 101 40870402 40870501 1.550000e-29 141.0
13 TraesCS3B01G081100 chr3A 87.850 107 11 2 4043 4148 40874722 40874827 1.570000e-24 124.0
14 TraesCS3B01G081100 chr3A 79.487 117 12 9 3983 4088 25900532 25900647 5.750000e-09 73.1
15 TraesCS3B01G081100 chr3D 97.166 2011 52 4 1141 3147 29951250 29953259 0.000000e+00 3393.0
16 TraesCS3B01G081100 chr3D 87.628 1948 224 6 1194 3128 29940489 29942432 0.000000e+00 2246.0
17 TraesCS3B01G081100 chr3D 85.538 2192 261 29 1193 3335 29945633 29947817 0.000000e+00 2241.0
18 TraesCS3B01G081100 chr3D 88.608 1027 71 24 3149 4148 29953295 29954302 0.000000e+00 1206.0
19 TraesCS3B01G081100 chr3D 92.201 359 14 6 11 356 29950430 29950787 2.880000e-136 496.0
20 TraesCS3B01G081100 chr3D 90.734 259 24 0 808 1066 29950995 29951253 3.070000e-91 346.0
21 TraesCS3B01G081100 chr3D 91.509 212 13 3 448 654 29950792 29951003 1.890000e-73 287.0
22 TraesCS3B01G081100 chr3D 82.133 347 42 6 808 1151 29945304 29945633 3.160000e-71 279.0
23 TraesCS3B01G081100 chr3D 97.403 77 2 0 362 438 158453902 158453826 9.360000e-27 132.0
24 TraesCS3B01G081100 chr3D 89.610 77 8 0 657 733 422038415 422038339 9.490000e-17 99.0
25 TraesCS3B01G081100 chr3D 76.923 143 24 5 3983 4116 454266590 454266732 5.750000e-09 73.1
26 TraesCS3B01G081100 chr4B 91.228 114 8 1 659 770 616748395 616748508 2.000000e-33 154.0
27 TraesCS3B01G081100 chrUn 97.403 77 2 0 362 438 267898237 267898161 9.360000e-27 132.0
28 TraesCS3B01G081100 chrUn 97.403 77 2 0 362 438 351637766 351637842 9.360000e-27 132.0
29 TraesCS3B01G081100 chr7D 97.403 77 2 0 362 438 382037539 382037615 9.360000e-27 132.0
30 TraesCS3B01G081100 chr7D 97.403 77 2 0 362 438 579007823 579007747 9.360000e-27 132.0
31 TraesCS3B01G081100 chr4D 97.403 77 2 0 362 438 123672096 123672172 9.360000e-27 132.0
32 TraesCS3B01G081100 chr2D 97.403 77 2 0 362 438 521302210 521302134 9.360000e-27 132.0
33 TraesCS3B01G081100 chr1D 97.403 77 2 0 362 438 351088077 351088153 9.360000e-27 132.0
34 TraesCS3B01G081100 chr1A 97.403 77 2 0 362 438 278509988 278510064 9.360000e-27 132.0
35 TraesCS3B01G081100 chr4A 88.060 67 8 0 657 723 567705685 567705619 3.440000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G081100 chr3B 51158838 51162985 4147 False 7661.000000 7661 100.000000 1 4148 1 chr3B.!!$F1 4147
1 TraesCS3B01G081100 chr3B 51143639 51151203 7564 False 2208.500000 2259 86.257500 1193 3335 2 chr3B.!!$F2 2142
2 TraesCS3B01G081100 chr3A 40858965 40874827 15862 False 1188.222222 4277 88.876889 1 4148 9 chr3A.!!$F2 4147
3 TraesCS3B01G081100 chr3D 29940489 29954302 13813 False 1311.750000 3393 89.439625 11 4148 8 chr3D.!!$F2 4137

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 12355 0.535102 CCGCACACAAGGTCCTTCTT 60.535 55.0 0.00 0.00 0.00 2.52 F
430 12396 0.542702 ATTGTTCTGGGCCACCTTGG 60.543 55.0 0.00 0.00 41.55 3.61 F
1574 13547 0.179051 GCTTCTCAGGCTCCATGGAG 60.179 60.0 33.73 33.73 44.56 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 13407 1.019278 GGTTCTTGAGGCGATCGCAA 61.019 55.000 38.00 23.96 44.11 4.85 R
2427 19798 1.007271 CGTGGGCAGCTCTATACCG 60.007 63.158 0.00 0.00 0.00 4.02 R
3384 20796 0.098200 GCGGCGAAAGAAATACCACC 59.902 55.000 12.98 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 12094 9.110502 GTTAATTTGAGTCTACAATCTTAGGGG 57.889 37.037 0.00 0.00 0.00 4.79
136 12100 3.054655 GTCTACAATCTTAGGGGGCAACA 60.055 47.826 0.00 0.00 39.74 3.33
137 12101 2.514458 ACAATCTTAGGGGGCAACAG 57.486 50.000 0.00 0.00 39.74 3.16
196 12162 4.681074 TCTGTTCAATCAGGTGTACACA 57.319 40.909 26.51 7.66 36.25 3.72
203 12169 3.829886 ATCAGGTGTACACAAAATGCG 57.170 42.857 26.51 7.15 0.00 4.73
364 12330 5.114780 TCTTCTCATTATTGCTGCTCAGTC 58.885 41.667 0.00 0.00 0.00 3.51
365 12331 3.451526 TCTCATTATTGCTGCTCAGTCG 58.548 45.455 0.00 0.00 0.00 4.18
366 12332 3.118992 TCTCATTATTGCTGCTCAGTCGT 60.119 43.478 0.00 0.00 0.00 4.34
367 12333 2.931969 TCATTATTGCTGCTCAGTCGTG 59.068 45.455 0.00 0.00 0.00 4.35
369 12335 2.741759 TATTGCTGCTCAGTCGTGAA 57.258 45.000 0.00 0.00 30.14 3.18
370 12336 1.151668 ATTGCTGCTCAGTCGTGAAC 58.848 50.000 0.00 0.00 30.14 3.18
371 12337 0.880278 TTGCTGCTCAGTCGTGAACC 60.880 55.000 0.00 0.00 30.14 3.62
372 12338 2.375766 GCTGCTCAGTCGTGAACCG 61.376 63.158 0.00 0.00 38.13 4.44
374 12340 2.355837 GCTCAGTCGTGAACCGCA 60.356 61.111 0.00 0.00 36.19 5.69
375 12341 2.658707 GCTCAGTCGTGAACCGCAC 61.659 63.158 0.00 0.00 44.21 5.34
382 12348 3.821995 GTGAACCGCACACAAGGT 58.178 55.556 0.00 0.00 46.91 3.50
383 12349 1.647084 GTGAACCGCACACAAGGTC 59.353 57.895 0.00 0.00 46.91 3.85
384 12350 1.525077 TGAACCGCACACAAGGTCC 60.525 57.895 0.00 0.00 40.37 4.46
385 12351 1.227853 GAACCGCACACAAGGTCCT 60.228 57.895 0.00 0.00 40.37 3.85
386 12352 0.818040 GAACCGCACACAAGGTCCTT 60.818 55.000 0.00 0.00 40.37 3.36
387 12353 0.818040 AACCGCACACAAGGTCCTTC 60.818 55.000 0.00 0.00 40.37 3.46
388 12354 1.071471 CCGCACACAAGGTCCTTCT 59.929 57.895 0.00 0.00 0.00 2.85
389 12355 0.535102 CCGCACACAAGGTCCTTCTT 60.535 55.000 0.00 0.00 0.00 2.52
390 12356 1.270625 CCGCACACAAGGTCCTTCTTA 60.271 52.381 0.00 0.00 0.00 2.10
391 12357 2.489971 CGCACACAAGGTCCTTCTTAA 58.510 47.619 0.00 0.00 0.00 1.85
392 12358 2.875933 CGCACACAAGGTCCTTCTTAAA 59.124 45.455 0.00 0.00 0.00 1.52
393 12359 3.303791 CGCACACAAGGTCCTTCTTAAAC 60.304 47.826 0.00 0.00 0.00 2.01
394 12360 3.883489 GCACACAAGGTCCTTCTTAAACT 59.117 43.478 0.00 0.00 0.00 2.66
395 12361 5.061179 GCACACAAGGTCCTTCTTAAACTA 58.939 41.667 0.00 0.00 0.00 2.24
396 12362 5.179555 GCACACAAGGTCCTTCTTAAACTAG 59.820 44.000 0.00 0.00 0.00 2.57
397 12363 6.522054 CACACAAGGTCCTTCTTAAACTAGA 58.478 40.000 0.00 0.00 0.00 2.43
398 12364 6.990349 CACACAAGGTCCTTCTTAAACTAGAA 59.010 38.462 0.00 0.00 33.33 2.10
399 12365 7.497909 CACACAAGGTCCTTCTTAAACTAGAAA 59.502 37.037 0.00 0.00 33.96 2.52
400 12366 8.218488 ACACAAGGTCCTTCTTAAACTAGAAAT 58.782 33.333 0.00 0.00 33.96 2.17
401 12367 9.720769 CACAAGGTCCTTCTTAAACTAGAAATA 57.279 33.333 0.00 0.00 33.96 1.40
405 12371 9.945904 AGGTCCTTCTTAAACTAGAAATAAGTG 57.054 33.333 0.00 1.24 33.96 3.16
406 12372 9.939802 GGTCCTTCTTAAACTAGAAATAAGTGA 57.060 33.333 0.00 0.00 33.96 3.41
422 12388 9.087424 GAAATAAGTGAAATAATTGTTCTGGGC 57.913 33.333 5.58 0.00 0.00 5.36
423 12389 5.405935 AAGTGAAATAATTGTTCTGGGCC 57.594 39.130 0.00 0.00 0.00 5.80
424 12390 4.415596 AGTGAAATAATTGTTCTGGGCCA 58.584 39.130 5.85 5.85 0.00 5.36
425 12391 4.220602 AGTGAAATAATTGTTCTGGGCCAC 59.779 41.667 0.00 0.00 0.00 5.01
426 12392 3.513515 TGAAATAATTGTTCTGGGCCACC 59.486 43.478 0.00 0.00 37.24 4.61
427 12393 3.473113 AATAATTGTTCTGGGCCACCT 57.527 42.857 0.00 0.00 37.76 4.00
428 12394 2.990740 TAATTGTTCTGGGCCACCTT 57.009 45.000 0.00 0.00 37.76 3.50
429 12395 1.341080 AATTGTTCTGGGCCACCTTG 58.659 50.000 0.00 0.00 37.76 3.61
430 12396 0.542702 ATTGTTCTGGGCCACCTTGG 60.543 55.000 0.00 0.00 41.55 3.61
441 12407 1.314730 CCACCTTGGCTTTTGTACGT 58.685 50.000 0.00 0.00 0.00 3.57
442 12408 1.679153 CCACCTTGGCTTTTGTACGTT 59.321 47.619 0.00 0.00 0.00 3.99
443 12409 2.542824 CCACCTTGGCTTTTGTACGTTG 60.543 50.000 0.00 0.00 0.00 4.10
444 12410 2.356382 CACCTTGGCTTTTGTACGTTGA 59.644 45.455 0.00 0.00 0.00 3.18
445 12411 2.356695 ACCTTGGCTTTTGTACGTTGAC 59.643 45.455 0.00 0.00 0.00 3.18
446 12412 2.287368 CCTTGGCTTTTGTACGTTGACC 60.287 50.000 0.00 0.00 0.00 4.02
455 12421 5.738118 TTTGTACGTTGACCGAGAAAAAT 57.262 34.783 0.00 0.00 40.70 1.82
486 12452 4.321745 GTGCGTTGTCTGCTAATGATTTTG 59.678 41.667 0.00 0.00 0.00 2.44
558 12528 0.994995 CCATCTCGTTCAACTGCTCG 59.005 55.000 0.00 0.00 0.00 5.03
606 12576 4.506625 CCCAGGAAAGGTGTCAATGTCTTA 60.507 45.833 0.00 0.00 0.00 2.10
655 12625 7.105588 TGTACTAGAGGAGTATTTCGTGTACA 58.894 38.462 0.00 0.00 42.69 2.90
662 12632 6.608610 AGGAGTATTTCGTGTACAAAATTGC 58.391 36.000 10.07 5.46 0.00 3.56
664 12634 6.523201 GGAGTATTTCGTGTACAAAATTGCTG 59.477 38.462 10.07 0.00 0.00 4.41
688 12658 2.349580 CACACGATCTTTCATGCACGAT 59.650 45.455 0.00 0.00 0.00 3.73
689 12659 2.604914 ACACGATCTTTCATGCACGATC 59.395 45.455 2.36 2.36 0.00 3.69
718 12688 2.665165 ACAGGATTTTGAAGCCACACA 58.335 42.857 0.00 0.00 40.13 3.72
719 12689 3.030291 ACAGGATTTTGAAGCCACACAA 58.970 40.909 0.00 0.00 40.13 3.33
726 12696 6.146021 GGATTTTGAAGCCACACAAATTACAG 59.854 38.462 0.00 0.00 36.80 2.74
729 12699 5.437289 TGAAGCCACACAAATTACAGAAG 57.563 39.130 0.00 0.00 0.00 2.85
735 12705 4.074970 CACACAAATTACAGAAGGAGGCT 58.925 43.478 0.00 0.00 0.00 4.58
736 12706 4.074970 ACACAAATTACAGAAGGAGGCTG 58.925 43.478 0.00 0.00 39.26 4.85
754 12724 4.130118 GGCTGTCCAATGGTGTAGATTAG 58.870 47.826 0.00 0.00 0.00 1.73
765 12735 4.038282 TGGTGTAGATTAGTTGTCGTGTGT 59.962 41.667 0.00 0.00 0.00 3.72
769 12739 4.537135 AGATTAGTTGTCGTGTGTGGAT 57.463 40.909 0.00 0.00 0.00 3.41
770 12740 5.654603 AGATTAGTTGTCGTGTGTGGATA 57.345 39.130 0.00 0.00 0.00 2.59
771 12741 6.222038 AGATTAGTTGTCGTGTGTGGATAT 57.778 37.500 0.00 0.00 0.00 1.63
788 12758 5.409826 GTGGATATTCGTCCCTGAATTCATC 59.590 44.000 8.96 0.00 39.27 2.92
791 12761 2.579207 TCGTCCCTGAATTCATCGTC 57.421 50.000 8.96 0.00 0.00 4.20
801 12771 2.988010 ATTCATCGTCTGCCTAGCAA 57.012 45.000 0.00 0.00 38.41 3.91
827 12797 4.963373 TCTTTCGTGTATTCCAACTTCCA 58.037 39.130 0.00 0.00 0.00 3.53
857 12827 4.710423 TCTGCTCTTCACATACTGAGTC 57.290 45.455 0.00 0.00 0.00 3.36
925 12895 4.352039 CAATCAGACATGCTGCAAAGATC 58.648 43.478 6.36 2.02 44.52 2.75
941 12911 6.936335 TGCAAAGATCGTATGAATGGATGTAT 59.064 34.615 0.00 0.00 0.00 2.29
943 12913 7.624974 GCAAAGATCGTATGAATGGATGTATGG 60.625 40.741 0.00 0.00 0.00 2.74
1105 13075 1.505151 TTTGCATCCACCAGCCCCTA 61.505 55.000 0.00 0.00 0.00 3.53
1115 13085 1.503784 ACCAGCCCCTATGAGCTACTA 59.496 52.381 0.00 0.00 37.18 1.82
1151 13121 1.746220 TGTTTCCAACAAGGTTGGTCG 59.254 47.619 23.26 3.38 38.72 4.79
1163 13133 1.071642 TTGGTCGCGTTTCATGGGA 59.928 52.632 5.77 0.00 0.00 4.37
1326 13296 0.832626 TGATGCAGGACACCGATGAT 59.167 50.000 0.00 0.00 0.00 2.45
1343 13313 2.111384 TGATAAGGTCAGAGCACCTCC 58.889 52.381 1.66 0.00 46.97 4.30
1471 13444 4.074970 CAAGAACCTAAATGGCAGTGTCT 58.925 43.478 0.00 0.00 40.22 3.41
1479 13452 0.251354 ATGGCAGTGTCTGTAGGCTG 59.749 55.000 0.00 0.00 33.43 4.85
1574 13547 0.179051 GCTTCTCAGGCTCCATGGAG 60.179 60.000 33.73 33.73 44.56 3.86
1832 13817 0.250513 GAGCCAGTCCGAAATGAGGT 59.749 55.000 0.00 0.00 0.00 3.85
1898 13883 6.304356 TGAAGATATTATTTTGCAGCGAGG 57.696 37.500 0.00 0.00 0.00 4.63
1961 13946 2.789409 AGAAAACCAGCTAGGCGAAT 57.211 45.000 2.50 0.00 43.14 3.34
2052 14037 1.647084 GGTGTCTGTGAACAACCGC 59.353 57.895 0.00 0.00 30.31 5.68
2163 14148 3.845781 TGCCTGGAGATAAGATTGTCC 57.154 47.619 0.00 0.00 0.00 4.02
2178 14163 2.363795 TCCGGAAGCGGGAGTCAT 60.364 61.111 0.00 0.00 0.00 3.06
2389 19760 6.650390 GTGGCCATCATTACTGAAACAATTTT 59.350 34.615 9.72 0.00 34.37 1.82
2427 19798 1.499049 CGCCTAAGCTTCGGATTACC 58.501 55.000 20.66 1.66 36.60 2.85
2457 19828 4.636435 CCCACGCCAGGTTTCCGT 62.636 66.667 0.00 0.00 35.29 4.69
2534 19905 3.972133 TCCAAGTACCTCTCGAATACCA 58.028 45.455 0.00 0.00 0.00 3.25
2631 20002 5.741388 ATTGCATACTCCGAATGAAGAAC 57.259 39.130 0.00 0.00 0.00 3.01
2659 20030 5.760253 GGTGATGAGACAATAACCATCGATT 59.240 40.000 0.00 0.00 38.50 3.34
2901 20272 2.278849 TGCCATTGCATGTGAAGGG 58.721 52.632 6.07 6.07 44.23 3.95
3147 20518 1.063616 TGCGAGGACGAAGACGATTAG 59.936 52.381 0.00 0.00 42.66 1.73
3161 20566 5.420409 AGACGATTAGGAGGTTTGACAATC 58.580 41.667 0.00 0.00 0.00 2.67
3259 20664 5.125100 ACTGAGTACATTTTTGGCACATG 57.875 39.130 0.00 0.00 39.30 3.21
3263 20668 4.870363 AGTACATTTTTGGCACATGTGAC 58.130 39.130 29.80 27.68 39.30 3.67
3273 20685 4.606457 GGCACATGTGACAACTATCTTC 57.394 45.455 29.80 6.58 38.82 2.87
3335 20747 8.511604 ACAACAAATGATTATCTCCAACCTAG 57.488 34.615 0.00 0.00 0.00 3.02
3337 20749 8.400947 CAACAAATGATTATCTCCAACCTAGTG 58.599 37.037 0.00 0.00 0.00 2.74
3338 20750 6.543831 ACAAATGATTATCTCCAACCTAGTGC 59.456 38.462 0.00 0.00 0.00 4.40
3384 20796 2.675844 TCTGACAAACGGACAACAGTTG 59.324 45.455 12.03 12.03 34.94 3.16
3402 20814 1.444836 TGGTGGTATTTCTTTCGCCG 58.555 50.000 0.00 0.00 32.87 6.46
3531 21024 1.661112 GAACGAGGGATTTCTTCTGCG 59.339 52.381 0.00 0.00 0.00 5.18
3532 21025 0.741221 ACGAGGGATTTCTTCTGCGC 60.741 55.000 0.00 0.00 0.00 6.09
3534 21027 0.741221 GAGGGATTTCTTCTGCGCGT 60.741 55.000 8.43 0.00 0.00 6.01
3547 21040 0.672091 TGCGCGTTTCAGGCTAATCA 60.672 50.000 8.43 0.00 0.00 2.57
3555 21048 4.550831 CGTTTCAGGCTAATCAATAGTGCG 60.551 45.833 0.00 0.00 33.87 5.34
3564 21057 1.450134 CAATAGTGCGCCCTGCTCA 60.450 57.895 4.18 0.00 46.63 4.26
3599 21092 2.149578 CTTTGACTTCTGCTCCTGTGG 58.850 52.381 0.00 0.00 0.00 4.17
3600 21093 1.131638 TTGACTTCTGCTCCTGTGGT 58.868 50.000 0.00 0.00 0.00 4.16
3601 21094 2.009681 TGACTTCTGCTCCTGTGGTA 57.990 50.000 0.00 0.00 0.00 3.25
3615 21108 2.281517 TGTGGTAGTTCACAAACACCG 58.718 47.619 0.00 0.00 43.70 4.94
3637 21138 1.102978 GCCATTACCGCTGTCCAAAT 58.897 50.000 0.00 0.00 0.00 2.32
3642 21143 4.156922 CCATTACCGCTGTCCAAATTTACA 59.843 41.667 0.00 0.00 0.00 2.41
3668 21171 0.528684 ATACAGAGGAAAGCGAGCGC 60.529 55.000 6.78 6.78 42.33 5.92
3686 21189 2.456119 CGCTGGACGTCCAATGAGC 61.456 63.158 35.36 31.19 46.97 4.26
3706 21215 0.727398 GCTTACCAGTCACGCATTCC 59.273 55.000 0.00 0.00 0.00 3.01
3717 21226 2.024868 CGCATTCCGTCGAACACCA 61.025 57.895 0.00 0.00 0.00 4.17
3797 21306 4.394078 CGTCGCCGTCGTCCAAGA 62.394 66.667 0.00 0.00 36.96 3.02
3798 21307 2.181021 GTCGCCGTCGTCCAAGAT 59.819 61.111 0.00 0.00 36.96 2.40
3799 21308 1.872679 GTCGCCGTCGTCCAAGATC 60.873 63.158 0.00 0.00 36.96 2.75
3800 21309 2.044555 TCGCCGTCGTCCAAGATCT 61.045 57.895 0.00 0.00 36.96 2.75
3801 21310 1.874019 CGCCGTCGTCCAAGATCTG 60.874 63.158 0.00 0.00 0.00 2.90
3802 21311 2.167861 GCCGTCGTCCAAGATCTGC 61.168 63.158 0.00 0.00 0.00 4.26
3803 21312 1.519455 CCGTCGTCCAAGATCTGCC 60.519 63.158 0.00 0.00 0.00 4.85
3804 21313 1.513158 CGTCGTCCAAGATCTGCCT 59.487 57.895 0.00 0.00 0.00 4.75
3805 21314 0.803768 CGTCGTCCAAGATCTGCCTG 60.804 60.000 0.00 0.00 0.00 4.85
3806 21315 0.247736 GTCGTCCAAGATCTGCCTGT 59.752 55.000 0.00 0.00 0.00 4.00
3807 21316 0.532573 TCGTCCAAGATCTGCCTGTC 59.467 55.000 0.00 0.00 0.00 3.51
3808 21317 0.803768 CGTCCAAGATCTGCCTGTCG 60.804 60.000 0.00 0.00 0.00 4.35
3809 21318 0.532573 GTCCAAGATCTGCCTGTCGA 59.467 55.000 0.00 0.00 0.00 4.20
3810 21319 1.066858 GTCCAAGATCTGCCTGTCGAA 60.067 52.381 0.00 0.00 0.00 3.71
3811 21320 1.066858 TCCAAGATCTGCCTGTCGAAC 60.067 52.381 0.00 0.00 0.00 3.95
3812 21321 1.338105 CCAAGATCTGCCTGTCGAACA 60.338 52.381 0.00 0.00 0.00 3.18
3813 21322 2.416747 CAAGATCTGCCTGTCGAACAA 58.583 47.619 0.00 0.00 0.00 2.83
3814 21323 2.086054 AGATCTGCCTGTCGAACAAC 57.914 50.000 0.00 0.00 0.00 3.32
3815 21324 1.620819 AGATCTGCCTGTCGAACAACT 59.379 47.619 0.00 0.00 0.00 3.16
3818 21327 1.138069 TCTGCCTGTCGAACAACTTGA 59.862 47.619 0.00 0.00 0.00 3.02
3874 21383 1.878953 ACAACTTGACGCCGATCTTT 58.121 45.000 0.00 0.00 0.00 2.52
3876 21385 1.068474 AACTTGACGCCGATCTTTCG 58.932 50.000 0.00 0.00 45.08 3.46
3905 21414 2.811317 GCCTGTCGCTTGGAGACG 60.811 66.667 0.00 0.00 41.24 4.18
3909 21418 2.355837 GTCGCTTGGAGACGTGCA 60.356 61.111 0.00 0.00 0.00 4.57
3933 21442 0.602638 ATGACGCCGTCAGCTCAAAA 60.603 50.000 25.24 0.00 46.04 2.44
3934 21443 0.602638 TGACGCCGTCAGCTCAAAAT 60.603 50.000 17.22 0.00 37.67 1.82
3935 21444 0.179215 GACGCCGTCAGCTCAAAATG 60.179 55.000 13.23 0.00 40.39 2.32
3988 21497 1.804372 GCAACCAGAGACGGAGCATAG 60.804 57.143 0.00 0.00 33.04 2.23
4072 21780 6.700352 CCTGAACCCAACAAACAATCATAAT 58.300 36.000 0.00 0.00 0.00 1.28
4074 21782 8.310382 CCTGAACCCAACAAACAATCATAATTA 58.690 33.333 0.00 0.00 0.00 1.40
4090 21798 7.328277 TCATAATTAAAACCATTGACTCCCG 57.672 36.000 0.00 0.00 0.00 5.14
4108 21816 3.069872 TCCCGCACTGTACTAGACAAAAA 59.930 43.478 0.00 0.00 37.70 1.94
4130 21839 8.581253 AAAAGCCTTTTAGAGCATATACAACT 57.419 30.769 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.916358 AGGGATGGGTAAGCTGCACT 60.916 55.000 1.02 0.00 0.00 4.40
2 3 0.464554 GAGGGATGGGTAAGCTGCAC 60.465 60.000 1.02 0.00 0.00 4.57
5 6 0.179034 GCTGAGGGATGGGTAAGCTG 60.179 60.000 0.00 0.00 0.00 4.24
6 7 0.327000 AGCTGAGGGATGGGTAAGCT 60.327 55.000 0.00 0.00 36.21 3.74
7 8 0.548510 AAGCTGAGGGATGGGTAAGC 59.451 55.000 0.00 0.00 0.00 3.09
8 9 2.224402 GCTAAGCTGAGGGATGGGTAAG 60.224 54.545 0.00 0.00 0.00 2.34
11 12 1.348775 GGCTAAGCTGAGGGATGGGT 61.349 60.000 0.00 0.00 0.00 4.51
13 14 0.108207 CTGGCTAAGCTGAGGGATGG 59.892 60.000 0.00 0.00 0.00 3.51
14 15 0.835941 ACTGGCTAAGCTGAGGGATG 59.164 55.000 0.00 0.00 0.00 3.51
125 12089 2.208640 TGGGACTGTTGCCCCCTA 59.791 61.111 2.38 0.00 45.40 3.53
130 12094 1.227853 AACTCGTGGGACTGTTGCC 60.228 57.895 0.00 0.00 0.00 4.52
136 12100 2.352817 GAGGTGAACTCGTGGGACT 58.647 57.895 0.00 0.00 36.29 3.85
137 12101 4.990288 GAGGTGAACTCGTGGGAC 57.010 61.111 0.00 0.00 36.29 4.46
196 12162 3.108144 GCACGCTAAATCATCGCATTTT 58.892 40.909 0.00 0.00 0.00 1.82
203 12169 2.830772 TTGCTGCACGCTAAATCATC 57.169 45.000 0.00 0.00 40.11 2.92
225 12191 1.607628 CCCTGTCCTATTCTACCGACG 59.392 57.143 0.00 0.00 0.00 5.12
365 12331 1.647084 GACCTTGTGTGCGGTTCAC 59.353 57.895 0.00 0.00 45.82 3.18
366 12332 1.525077 GGACCTTGTGTGCGGTTCA 60.525 57.895 0.00 0.00 32.62 3.18
367 12333 0.818040 AAGGACCTTGTGTGCGGTTC 60.818 55.000 5.76 0.00 40.82 3.62
369 12335 1.227853 GAAGGACCTTGTGTGCGGT 60.228 57.895 12.68 0.00 40.82 5.68
370 12336 0.535102 AAGAAGGACCTTGTGTGCGG 60.535 55.000 12.68 0.00 40.82 5.69
371 12337 2.163818 TAAGAAGGACCTTGTGTGCG 57.836 50.000 12.68 0.00 40.82 5.34
372 12338 3.883489 AGTTTAAGAAGGACCTTGTGTGC 59.117 43.478 12.68 0.00 35.12 4.57
374 12340 6.742559 TCTAGTTTAAGAAGGACCTTGTGT 57.257 37.500 12.68 1.60 0.00 3.72
375 12341 8.622948 ATTTCTAGTTTAAGAAGGACCTTGTG 57.377 34.615 12.68 0.00 36.85 3.33
379 12345 9.945904 CACTTATTTCTAGTTTAAGAAGGACCT 57.054 33.333 12.72 0.00 36.85 3.85
380 12346 9.939802 TCACTTATTTCTAGTTTAAGAAGGACC 57.060 33.333 12.72 0.00 36.85 4.46
396 12362 9.087424 GCCCAGAACAATTATTTCACTTATTTC 57.913 33.333 2.68 0.00 0.00 2.17
397 12363 8.040727 GGCCCAGAACAATTATTTCACTTATTT 58.959 33.333 0.00 0.00 0.00 1.40
398 12364 7.180051 TGGCCCAGAACAATTATTTCACTTATT 59.820 33.333 0.00 0.00 0.00 1.40
399 12365 6.667414 TGGCCCAGAACAATTATTTCACTTAT 59.333 34.615 0.00 0.00 0.00 1.73
400 12366 6.013379 TGGCCCAGAACAATTATTTCACTTA 58.987 36.000 0.00 0.00 0.00 2.24
401 12367 4.837860 TGGCCCAGAACAATTATTTCACTT 59.162 37.500 0.00 0.00 0.00 3.16
402 12368 4.220602 GTGGCCCAGAACAATTATTTCACT 59.779 41.667 0.00 0.00 0.00 3.41
403 12369 4.494484 GTGGCCCAGAACAATTATTTCAC 58.506 43.478 0.00 0.00 0.00 3.18
404 12370 3.513515 GGTGGCCCAGAACAATTATTTCA 59.486 43.478 0.00 0.00 0.00 2.69
405 12371 3.769300 AGGTGGCCCAGAACAATTATTTC 59.231 43.478 0.00 0.00 0.00 2.17
406 12372 3.790126 AGGTGGCCCAGAACAATTATTT 58.210 40.909 0.00 0.00 0.00 1.40
407 12373 3.473113 AGGTGGCCCAGAACAATTATT 57.527 42.857 0.00 0.00 0.00 1.40
408 12374 3.099141 CAAGGTGGCCCAGAACAATTAT 58.901 45.455 0.00 0.00 0.00 1.28
409 12375 2.524306 CAAGGTGGCCCAGAACAATTA 58.476 47.619 0.00 0.00 0.00 1.40
410 12376 1.341080 CAAGGTGGCCCAGAACAATT 58.659 50.000 0.00 0.00 0.00 2.32
411 12377 0.542702 CCAAGGTGGCCCAGAACAAT 60.543 55.000 0.00 0.00 0.00 2.71
412 12378 1.152567 CCAAGGTGGCCCAGAACAA 60.153 57.895 0.00 0.00 0.00 2.83
413 12379 2.520458 CCAAGGTGGCCCAGAACA 59.480 61.111 0.00 0.00 0.00 3.18
422 12388 1.314730 ACGTACAAAAGCCAAGGTGG 58.685 50.000 0.00 0.00 41.55 4.61
423 12389 2.356382 TCAACGTACAAAAGCCAAGGTG 59.644 45.455 0.00 0.00 0.00 4.00
424 12390 2.356695 GTCAACGTACAAAAGCCAAGGT 59.643 45.455 0.00 0.00 0.00 3.50
425 12391 2.287368 GGTCAACGTACAAAAGCCAAGG 60.287 50.000 0.00 0.00 0.00 3.61
426 12392 2.601266 CGGTCAACGTACAAAAGCCAAG 60.601 50.000 0.00 0.00 37.93 3.61
427 12393 1.331138 CGGTCAACGTACAAAAGCCAA 59.669 47.619 0.00 0.00 37.93 4.52
428 12394 0.938713 CGGTCAACGTACAAAAGCCA 59.061 50.000 0.00 0.00 37.93 4.75
429 12395 1.193874 CTCGGTCAACGTACAAAAGCC 59.806 52.381 0.00 0.00 44.69 4.35
430 12396 2.129607 TCTCGGTCAACGTACAAAAGC 58.870 47.619 0.00 0.00 44.69 3.51
431 12397 4.782252 TTTCTCGGTCAACGTACAAAAG 57.218 40.909 0.00 0.00 44.69 2.27
432 12398 5.542616 TTTTTCTCGGTCAACGTACAAAA 57.457 34.783 0.00 0.00 44.69 2.44
433 12399 5.293814 TCATTTTTCTCGGTCAACGTACAAA 59.706 36.000 0.00 0.00 44.69 2.83
434 12400 4.809958 TCATTTTTCTCGGTCAACGTACAA 59.190 37.500 0.00 0.00 44.69 2.41
435 12401 4.370049 TCATTTTTCTCGGTCAACGTACA 58.630 39.130 0.00 0.00 44.69 2.90
436 12402 4.977741 TCATTTTTCTCGGTCAACGTAC 57.022 40.909 0.00 0.00 44.69 3.67
437 12403 5.051816 ACTTCATTTTTCTCGGTCAACGTA 58.948 37.500 0.00 0.00 44.69 3.57
438 12404 3.875134 ACTTCATTTTTCTCGGTCAACGT 59.125 39.130 0.00 0.00 44.69 3.99
439 12405 4.468095 ACTTCATTTTTCTCGGTCAACG 57.532 40.909 0.00 0.00 46.11 4.10
440 12406 5.469084 ACCTACTTCATTTTTCTCGGTCAAC 59.531 40.000 0.00 0.00 0.00 3.18
441 12407 5.468746 CACCTACTTCATTTTTCTCGGTCAA 59.531 40.000 0.00 0.00 0.00 3.18
442 12408 4.994852 CACCTACTTCATTTTTCTCGGTCA 59.005 41.667 0.00 0.00 0.00 4.02
443 12409 4.142881 GCACCTACTTCATTTTTCTCGGTC 60.143 45.833 0.00 0.00 0.00 4.79
444 12410 3.751698 GCACCTACTTCATTTTTCTCGGT 59.248 43.478 0.00 0.00 0.00 4.69
445 12411 3.181520 CGCACCTACTTCATTTTTCTCGG 60.182 47.826 0.00 0.00 0.00 4.63
446 12412 3.432252 ACGCACCTACTTCATTTTTCTCG 59.568 43.478 0.00 0.00 0.00 4.04
455 12421 1.872237 GCAGACAACGCACCTACTTCA 60.872 52.381 0.00 0.00 0.00 3.02
486 12452 4.644103 ATCTGCAGTTCATGTTTATGGC 57.356 40.909 14.67 0.00 34.97 4.40
524 12494 4.072839 CGAGATGGACATACAGGCTACTA 58.927 47.826 0.00 0.00 0.00 1.82
606 12576 4.833380 TCAAGCTAGCGGAACCTAATATCT 59.167 41.667 9.55 0.00 0.00 1.98
655 12625 2.294233 AGATCGTGTGCACAGCAATTTT 59.706 40.909 22.40 0.65 41.47 1.82
662 12632 2.726989 GCATGAAAGATCGTGTGCACAG 60.727 50.000 22.40 14.50 43.28 3.66
664 12634 1.197492 TGCATGAAAGATCGTGTGCAC 59.803 47.619 10.75 10.75 43.28 4.57
669 12639 2.862536 AGATCGTGCATGAAAGATCGTG 59.137 45.455 20.05 0.00 42.94 4.35
718 12688 3.330701 TGGACAGCCTCCTTCTGTAATTT 59.669 43.478 0.00 0.00 44.09 1.82
719 12689 2.912956 TGGACAGCCTCCTTCTGTAATT 59.087 45.455 0.00 0.00 44.09 1.40
726 12696 0.329596 ACCATTGGACAGCCTCCTTC 59.670 55.000 10.37 0.00 40.26 3.46
729 12699 0.618458 TACACCATTGGACAGCCTCC 59.382 55.000 10.37 0.00 39.97 4.30
735 12705 6.121776 ACAACTAATCTACACCATTGGACA 57.878 37.500 10.37 0.00 0.00 4.02
736 12706 5.291128 CGACAACTAATCTACACCATTGGAC 59.709 44.000 10.37 0.00 0.00 4.02
754 12724 2.991190 ACGAATATCCACACACGACAAC 59.009 45.455 0.00 0.00 0.00 3.32
765 12735 5.551233 GATGAATTCAGGGACGAATATCCA 58.449 41.667 14.54 0.00 40.96 3.41
769 12739 4.341235 AGACGATGAATTCAGGGACGAATA 59.659 41.667 23.32 0.00 34.49 1.75
770 12740 3.133003 AGACGATGAATTCAGGGACGAAT 59.867 43.478 23.32 13.64 37.20 3.34
771 12741 2.496070 AGACGATGAATTCAGGGACGAA 59.504 45.455 23.32 0.00 0.00 3.85
788 12758 2.125912 AGCGTTGCTAGGCAGACG 60.126 61.111 14.88 16.39 40.61 4.18
791 12761 0.723981 GAAAGAGCGTTGCTAGGCAG 59.276 55.000 14.88 0.00 39.88 4.85
801 12771 2.735134 GTTGGAATACACGAAAGAGCGT 59.265 45.455 0.00 0.00 46.88 5.07
827 12797 2.092968 TGTGAAGAGCAGAACAACAGGT 60.093 45.455 0.00 0.00 0.00 4.00
857 12827 5.119588 GGATCAATTGCATTGTGAACAGTTG 59.880 40.000 0.00 0.00 41.02 3.16
908 12878 2.105006 ACGATCTTTGCAGCATGTCT 57.895 45.000 0.00 0.00 39.31 3.41
925 12895 6.455647 ACTGTACCATACATCCATTCATACG 58.544 40.000 0.00 0.00 38.15 3.06
941 12911 2.760650 CTGCCTATGACTGACTGTACCA 59.239 50.000 0.00 0.00 0.00 3.25
943 12913 2.796383 CGCTGCCTATGACTGACTGTAC 60.796 54.545 0.00 0.00 0.00 2.90
957 12927 2.031163 GACTTGTCACCGCTGCCT 59.969 61.111 0.00 0.00 0.00 4.75
960 12930 2.320587 GCTGGACTTGTCACCGCTG 61.321 63.158 3.08 0.00 0.00 5.18
994 12964 1.885157 CCGTGTTTGCCATGATGCT 59.115 52.632 0.00 0.00 31.20 3.79
1070 13040 7.977853 GTGGATGCAAAATAAACTCTGAATCAT 59.022 33.333 0.00 0.00 0.00 2.45
1105 13075 8.663209 ATTGATAGTTGAGGATAGTAGCTCAT 57.337 34.615 0.00 0.00 0.00 2.90
1151 13121 1.453155 AGATGTGTCCCATGAAACGC 58.547 50.000 0.00 0.00 32.56 4.84
1163 13133 8.807118 TGTAGATCTTACAAGAAGAAGATGTGT 58.193 33.333 0.00 0.00 41.43 3.72
1343 13313 3.450457 AGTTCTAATGGCAGTCTCTCCAG 59.550 47.826 0.00 0.00 35.57 3.86
1437 13407 1.019278 GGTTCTTGAGGCGATCGCAA 61.019 55.000 38.00 23.96 44.11 4.85
1440 13410 2.579207 TTAGGTTCTTGAGGCGATCG 57.421 50.000 11.69 11.69 0.00 3.69
1471 13444 5.435686 AACTGTCCATTATTCAGCCTACA 57.564 39.130 0.00 0.00 33.12 2.74
1727 13712 3.040795 GGAAAAACTTTTCGGCTTCGAC 58.959 45.455 8.44 0.00 45.68 4.20
1832 13817 2.325583 AAGCAGAACCTTGTCGAACA 57.674 45.000 0.00 0.00 0.00 3.18
1898 13883 3.354948 TGGTGGATATATCTGCCATGC 57.645 47.619 18.38 1.75 33.66 4.06
1961 13946 5.909477 TCTTTCGTGTTTTACCTCTCTTCA 58.091 37.500 0.00 0.00 0.00 3.02
2034 14019 1.092921 TGCGGTTGTTCACAGACACC 61.093 55.000 0.00 0.00 0.00 4.16
2163 14148 3.380479 TTTATATGACTCCCGCTTCCG 57.620 47.619 0.00 0.00 0.00 4.30
2178 14163 8.421784 GGTGTAGTGATGACCTTCTGATTTATA 58.578 37.037 0.00 0.00 0.00 0.98
2389 19760 1.794714 GGCCCACCTTCTCTATCTGA 58.205 55.000 0.00 0.00 0.00 3.27
2427 19798 1.007271 CGTGGGCAGCTCTATACCG 60.007 63.158 0.00 0.00 0.00 4.02
2457 19828 7.148423 CGTGTGTTCTTATTCATTTCATCTGGA 60.148 37.037 0.00 0.00 0.00 3.86
2534 19905 7.038160 TGGATTCCCATTTTGATGAAATCTGTT 60.038 33.333 0.00 0.00 40.16 3.16
2631 20002 4.000325 TGGTTATTGTCTCATCACCAACG 59.000 43.478 0.00 0.00 31.24 4.10
2659 20030 2.589540 CACCCTATTCCTGGCGCA 59.410 61.111 10.83 0.00 0.00 6.09
2901 20272 2.026822 TGGCCTCTCAATCCTTTCTGAC 60.027 50.000 3.32 0.00 0.00 3.51
3161 20566 1.335872 GCGGTCACTTTGGTGGATTTG 60.336 52.381 0.00 0.00 43.17 2.32
3196 20601 3.967332 CAAAGGCATTTGGGAGTTGAT 57.033 42.857 15.86 0.00 41.80 2.57
3259 20664 9.515020 TTGAAACAAATTGAAGATAGTTGTCAC 57.485 29.630 0.00 0.00 31.41 3.67
3331 20743 9.614792 AACATAAACTTTTAGGATAGCACTAGG 57.385 33.333 0.63 0.00 0.00 3.02
3365 20777 1.740585 CCAACTGTTGTCCGTTTGTCA 59.259 47.619 18.38 0.00 0.00 3.58
3366 20778 1.741145 ACCAACTGTTGTCCGTTTGTC 59.259 47.619 18.38 0.00 0.00 3.18
3384 20796 0.098200 GCGGCGAAAGAAATACCACC 59.902 55.000 12.98 0.00 0.00 4.61
3402 20814 1.321474 TAGCCATGCCTTGCTATTGC 58.679 50.000 0.00 0.00 39.00 3.56
3531 21024 4.786609 GCACTATTGATTAGCCTGAAACGC 60.787 45.833 0.00 0.00 0.00 4.84
3532 21025 4.550831 CGCACTATTGATTAGCCTGAAACG 60.551 45.833 0.00 0.00 0.00 3.60
3534 21027 3.312421 GCGCACTATTGATTAGCCTGAAA 59.688 43.478 0.30 0.00 0.00 2.69
3547 21040 2.989639 TGAGCAGGGCGCACTATT 59.010 55.556 14.30 2.37 46.13 1.73
3555 21048 2.282745 AAGCCAAGTGAGCAGGGC 60.283 61.111 0.00 0.00 46.77 5.19
3582 21075 1.895798 CTACCACAGGAGCAGAAGTCA 59.104 52.381 0.00 0.00 0.00 3.41
3584 21077 2.016905 ACTACCACAGGAGCAGAAGT 57.983 50.000 0.00 0.00 0.00 3.01
3599 21092 0.233848 CGGCGGTGTTTGTGAACTAC 59.766 55.000 0.00 0.00 36.70 2.73
3600 21093 1.500512 GCGGCGGTGTTTGTGAACTA 61.501 55.000 9.78 0.00 36.70 2.24
3601 21094 2.830285 GCGGCGGTGTTTGTGAACT 61.830 57.895 9.78 0.00 36.70 3.01
3615 21108 3.573491 GACAGCGGTAATGGCGGC 61.573 66.667 0.00 0.00 35.00 6.53
3628 21121 6.597672 TGTATGCCTACTGTAAATTTGGACAG 59.402 38.462 16.24 16.24 46.95 3.51
3637 21138 6.614694 TTTCCTCTGTATGCCTACTGTAAA 57.385 37.500 0.74 1.97 0.00 2.01
3642 21143 2.101582 CGCTTTCCTCTGTATGCCTACT 59.898 50.000 0.74 0.00 0.00 2.57
3673 21176 0.645868 GTAAGCGCTCATTGGACGTC 59.354 55.000 12.06 7.13 0.00 4.34
3686 21189 0.370273 GAATGCGTGACTGGTAAGCG 59.630 55.000 0.00 0.00 0.00 4.68
3706 21215 0.874175 TGCTCTGTTGGTGTTCGACG 60.874 55.000 0.00 0.00 32.34 5.12
3797 21306 2.146342 CAAGTTGTTCGACAGGCAGAT 58.854 47.619 0.00 0.00 0.00 2.90
3798 21307 1.138069 TCAAGTTGTTCGACAGGCAGA 59.862 47.619 2.11 0.00 0.00 4.26
3799 21308 1.261619 GTCAAGTTGTTCGACAGGCAG 59.738 52.381 2.11 0.00 0.00 4.85
3800 21309 1.295792 GTCAAGTTGTTCGACAGGCA 58.704 50.000 2.11 0.00 0.00 4.75
3801 21310 0.232303 CGTCAAGTTGTTCGACAGGC 59.768 55.000 14.40 0.00 0.00 4.85
3802 21311 0.232303 GCGTCAAGTTGTTCGACAGG 59.768 55.000 20.46 2.46 0.00 4.00
3803 21312 0.232303 GGCGTCAAGTTGTTCGACAG 59.768 55.000 20.46 4.53 0.00 3.51
3804 21313 0.460459 TGGCGTCAAGTTGTTCGACA 60.460 50.000 20.87 20.87 39.02 4.35
3805 21314 0.042448 GTGGCGTCAAGTTGTTCGAC 60.042 55.000 20.46 18.90 0.00 4.20
3806 21315 1.155424 GGTGGCGTCAAGTTGTTCGA 61.155 55.000 20.46 0.00 0.00 3.71
3807 21316 1.157870 AGGTGGCGTCAAGTTGTTCG 61.158 55.000 14.95 14.95 0.00 3.95
3808 21317 1.002792 GAAGGTGGCGTCAAGTTGTTC 60.003 52.381 2.11 0.00 0.00 3.18
3809 21318 1.021968 GAAGGTGGCGTCAAGTTGTT 58.978 50.000 2.11 0.00 0.00 2.83
3810 21319 0.180406 AGAAGGTGGCGTCAAGTTGT 59.820 50.000 2.11 0.00 0.00 3.32
3811 21320 1.002468 CAAGAAGGTGGCGTCAAGTTG 60.002 52.381 0.00 0.00 0.00 3.16
3812 21321 1.134220 TCAAGAAGGTGGCGTCAAGTT 60.134 47.619 0.00 0.00 0.00 2.66
3813 21322 0.468226 TCAAGAAGGTGGCGTCAAGT 59.532 50.000 0.00 0.00 0.00 3.16
3814 21323 1.734465 GATCAAGAAGGTGGCGTCAAG 59.266 52.381 0.00 0.00 0.00 3.02
3815 21324 1.347707 AGATCAAGAAGGTGGCGTCAA 59.652 47.619 0.00 0.00 0.00 3.18
3818 21327 0.674895 GCAGATCAAGAAGGTGGCGT 60.675 55.000 0.00 0.00 0.00 5.68
3888 21397 2.811317 CGTCTCCAAGCGACAGGC 60.811 66.667 0.00 0.00 44.05 4.85
3905 21414 2.502510 CGGCGTCATTGCTTGCAC 60.503 61.111 0.00 0.00 34.52 4.57
3909 21418 2.680913 GCTGACGGCGTCATTGCTT 61.681 57.895 38.91 1.91 41.94 3.91
3933 21442 1.490490 AGGATGCATTCGGTGGTACAT 59.510 47.619 0.00 0.00 44.52 2.29
3934 21443 0.908910 AGGATGCATTCGGTGGTACA 59.091 50.000 0.00 0.00 0.00 2.90
3935 21444 2.102588 ACTAGGATGCATTCGGTGGTAC 59.897 50.000 0.00 0.00 0.00 3.34
4010 21519 5.627499 ACTTGAGCGCTAAATTTCATTGA 57.373 34.783 11.50 0.00 0.00 2.57
4072 21780 2.554893 GTGCGGGAGTCAATGGTTTTAA 59.445 45.455 0.00 0.00 0.00 1.52
4074 21782 0.958822 GTGCGGGAGTCAATGGTTTT 59.041 50.000 0.00 0.00 0.00 2.43
4090 21798 4.065789 AGGCTTTTTGTCTAGTACAGTGC 58.934 43.478 0.00 0.00 39.87 4.40
4108 21816 6.058183 CCAGTTGTATATGCTCTAAAAGGCT 58.942 40.000 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.