Multiple sequence alignment - TraesCS3B01G080700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G080700 chr3B 100.000 2559 0 0 1 2559 50960372 50957814 0.000000e+00 4726.0
1 TraesCS3B01G080700 chr3B 94.307 685 34 4 6 689 50655239 50654559 0.000000e+00 1044.0
2 TraesCS3B01G080700 chr3B 88.677 733 46 14 680 1406 50654757 50654056 0.000000e+00 859.0
3 TraesCS3B01G080700 chr3B 87.933 721 44 19 680 1390 50942799 50943486 0.000000e+00 809.0
4 TraesCS3B01G080700 chr3B 86.319 709 64 18 700 1384 421532419 421531720 0.000000e+00 741.0
5 TraesCS3B01G080700 chr3B 83.261 687 64 26 32 689 50942332 50942996 3.670000e-163 584.0
6 TraesCS3B01G080700 chr3B 94.231 104 6 0 2111 2214 50944080 50944183 2.640000e-35 159.0
7 TraesCS3B01G080700 chr3B 87.619 105 9 4 2120 2223 51010228 51010127 4.470000e-23 119.0
8 TraesCS3B01G080700 chr3B 92.405 79 5 1 1448 1526 50943547 50943624 7.480000e-21 111.0
9 TraesCS3B01G080700 chr3B 78.723 188 17 12 1416 1600 50653917 50653750 1.250000e-18 104.0
10 TraesCS3B01G080700 chr3B 97.500 40 1 0 6 45 50941453 50941492 4.570000e-08 69.4
11 TraesCS3B01G080700 chr3D 87.129 1383 79 37 680 2052 29861849 29860556 0.000000e+00 1476.0
12 TraesCS3B01G080700 chr3D 86.359 953 74 17 680 1600 29812800 29811872 0.000000e+00 989.0
13 TraesCS3B01G080700 chr3D 89.764 762 37 20 1830 2559 29800004 29799252 0.000000e+00 937.0
14 TraesCS3B01G080700 chr3D 88.452 788 49 17 680 1459 29801280 29800527 0.000000e+00 913.0
15 TraesCS3B01G080700 chr3D 88.936 705 55 9 680 1380 29790106 29789421 0.000000e+00 848.0
16 TraesCS3B01G080700 chr3D 92.600 527 29 3 2038 2559 29852995 29852474 0.000000e+00 749.0
17 TraesCS3B01G080700 chr3D 86.319 709 71 16 695 1384 299744802 299745503 0.000000e+00 749.0
18 TraesCS3B01G080700 chr3D 92.043 465 25 5 225 681 29862118 29861658 0.000000e+00 643.0
19 TraesCS3B01G080700 chr3D 87.273 550 33 12 146 676 29813144 29812613 6.100000e-166 593.0
20 TraesCS3B01G080700 chr3D 95.276 254 7 2 1555 1805 29800248 29799997 5.130000e-107 398.0
21 TraesCS3B01G080700 chr3D 85.215 372 39 14 329 689 29801447 29801081 4.020000e-98 368.0
22 TraesCS3B01G080700 chr3D 92.562 242 17 1 441 681 29790155 29789914 1.880000e-91 346.0
23 TraesCS3B01G080700 chr3D 79.003 381 43 22 33 405 29790511 29790160 2.560000e-55 226.0
24 TraesCS3B01G080700 chr3D 86.087 115 7 2 1448 1562 29800511 29800406 5.790000e-22 115.0
25 TraesCS3B01G080700 chr3D 100.000 44 0 0 2087 2130 29799813 29799770 5.870000e-12 82.4
26 TraesCS3B01G080700 chr3D 89.062 64 5 1 8 71 29863389 29863328 7.590000e-11 78.7
27 TraesCS3B01G080700 chr3D 97.500 40 1 0 6 45 29797781 29797742 4.570000e-08 69.4
28 TraesCS3B01G080700 chr7B 85.576 929 78 29 680 1597 707946986 707946103 0.000000e+00 922.0
29 TraesCS3B01G080700 chr7B 91.220 205 14 4 487 689 707946989 707946787 2.510000e-70 276.0
30 TraesCS3B01G080700 chr3A 84.318 931 70 28 680 1579 40390397 40389512 0.000000e+00 841.0
31 TraesCS3B01G080700 chr3A 87.068 781 53 15 680 1444 40556516 40555768 0.000000e+00 839.0
32 TraesCS3B01G080700 chr3A 86.471 680 49 20 6 681 40556965 40556325 0.000000e+00 706.0
33 TraesCS3B01G080700 chr3A 84.908 709 81 16 695 1384 436274418 436273717 0.000000e+00 693.0
34 TraesCS3B01G080700 chr3A 83.026 542 45 21 162 681 40390722 40390206 5.020000e-122 448.0
35 TraesCS3B01G080700 chr3A 92.742 248 12 5 2030 2276 40389167 40388925 1.130000e-93 353.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G080700 chr3B 50957814 50960372 2558 True 4726.000000 4726 100.000000 1 2559 1 chr3B.!!$R1 2558
1 TraesCS3B01G080700 chr3B 421531720 421532419 699 True 741.000000 741 86.319000 700 1384 1 chr3B.!!$R3 684
2 TraesCS3B01G080700 chr3B 50653750 50655239 1489 True 669.000000 1044 87.235667 6 1600 3 chr3B.!!$R4 1594
3 TraesCS3B01G080700 chr3B 50941453 50944183 2730 False 346.480000 809 91.066000 6 2214 5 chr3B.!!$F1 2208
4 TraesCS3B01G080700 chr3D 29811872 29813144 1272 True 791.000000 989 86.816000 146 1600 2 chr3D.!!$R4 1454
5 TraesCS3B01G080700 chr3D 29852474 29852995 521 True 749.000000 749 92.600000 2038 2559 1 chr3D.!!$R1 521
6 TraesCS3B01G080700 chr3D 299744802 299745503 701 False 749.000000 749 86.319000 695 1384 1 chr3D.!!$F1 689
7 TraesCS3B01G080700 chr3D 29860556 29863389 2833 True 732.566667 1476 89.411333 8 2052 3 chr3D.!!$R5 2044
8 TraesCS3B01G080700 chr3D 29789421 29790511 1090 True 473.333333 848 86.833667 33 1380 3 chr3D.!!$R2 1347
9 TraesCS3B01G080700 chr3D 29797742 29801447 3705 True 411.828571 937 91.756286 6 2559 7 chr3D.!!$R3 2553
10 TraesCS3B01G080700 chr7B 707946103 707946989 886 True 599.000000 922 88.398000 487 1597 2 chr7B.!!$R1 1110
11 TraesCS3B01G080700 chr3A 40555768 40556965 1197 True 772.500000 839 86.769500 6 1444 2 chr3A.!!$R3 1438
12 TraesCS3B01G080700 chr3A 436273717 436274418 701 True 693.000000 693 84.908000 695 1384 1 chr3A.!!$R1 689
13 TraesCS3B01G080700 chr3A 40388925 40390722 1797 True 547.333333 841 86.695333 162 2276 3 chr3A.!!$R2 2114

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
720 2704 0.39086 CATCCTCCTCGCGATTCCTT 59.609 55.0 10.36 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2536 5034 0.107831 TTGTCCTGCTGCTTAACGGT 59.892 50.0 0.0 0.0 0.0 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 900 6.095440 TCTCATGTTCGATTACTGATCAGACA 59.905 38.462 29.27 19.65 35.20 3.41
47 901 6.809869 TCATGTTCGATTACTGATCAGACAT 58.190 36.000 29.27 20.90 39.00 3.06
55 909 8.579863 TCGATTACTGATCAGACATATGTTCAT 58.420 33.333 29.27 4.55 34.23 2.57
105 959 3.426426 CGGCCGTAGATGCTATTACTCTC 60.426 52.174 19.50 0.00 0.00 3.20
119 973 3.362399 CTCTCATGGGCACTCGCGT 62.362 63.158 5.77 0.00 39.92 6.01
265 2201 8.099537 ACCATGATCATCATCAATCTACCTAAC 58.900 37.037 4.86 0.00 42.53 2.34
278 2214 4.874970 TCTACCTAACCGTCTTTGTTCAC 58.125 43.478 0.00 0.00 0.00 3.18
281 2224 2.223377 CCTAACCGTCTTTGTTCACAGC 59.777 50.000 0.00 0.00 0.00 4.40
450 2424 1.078848 GCTCCCAGTGATCTGCGTT 60.079 57.895 0.00 0.00 40.09 4.84
499 2481 4.148825 CCCGTTAGCTCGCTGCCT 62.149 66.667 0.85 0.00 44.23 4.75
621 2605 4.767255 GGGGCGCTCACCTGTCAG 62.767 72.222 10.74 0.00 0.00 3.51
626 2610 4.687215 GCTCACCTGTCAGCGGCA 62.687 66.667 1.45 0.00 0.00 5.69
627 2611 2.267006 CTCACCTGTCAGCGGCAT 59.733 61.111 1.45 0.00 0.00 4.40
628 2612 2.046988 TCACCTGTCAGCGGCATG 60.047 61.111 1.45 0.00 0.00 4.06
629 2613 3.129502 CACCTGTCAGCGGCATGG 61.130 66.667 1.45 0.00 0.00 3.66
661 2645 4.463879 CTCCCCGGCTGCTGACTG 62.464 72.222 10.70 0.00 0.00 3.51
669 2653 3.720193 CTGCTGACTGTGCGCCAC 61.720 66.667 4.18 3.72 34.56 5.01
719 2703 1.467678 CCATCCTCCTCGCGATTCCT 61.468 60.000 10.36 0.00 0.00 3.36
720 2704 0.390860 CATCCTCCTCGCGATTCCTT 59.609 55.000 10.36 0.00 0.00 3.36
721 2705 0.676736 ATCCTCCTCGCGATTCCTTC 59.323 55.000 10.36 0.00 0.00 3.46
733 2717 1.614241 ATTCCTTCCTCCACGTCGGG 61.614 60.000 0.00 0.00 34.36 5.14
789 2773 4.830765 TGGCATGTAGACCGCGCC 62.831 66.667 0.00 0.00 43.28 6.53
917 2902 4.736896 GTCCGACGCACACTCCCC 62.737 72.222 0.00 0.00 0.00 4.81
1004 2992 1.212616 GCGGCTATACTCTGCAAGTG 58.787 55.000 10.59 0.00 39.11 3.16
1040 3028 0.178068 CTAGCATTAGCACCACCCGT 59.822 55.000 0.00 0.00 45.49 5.28
1041 3029 0.177141 TAGCATTAGCACCACCCGTC 59.823 55.000 0.00 0.00 45.49 4.79
1042 3030 2.461110 GCATTAGCACCACCCGTCG 61.461 63.158 0.00 0.00 41.58 5.12
1043 3031 1.813753 CATTAGCACCACCCGTCGG 60.814 63.158 3.60 3.60 0.00 4.79
1044 3032 3.675619 ATTAGCACCACCCGTCGGC 62.676 63.158 5.50 0.00 0.00 5.54
1051 3039 4.873129 CACCCGTCGGCCAGATCG 62.873 72.222 5.50 7.86 0.00 3.69
1081 3101 0.539051 CTGCCAGTACCAGCTAGCTT 59.461 55.000 16.46 3.98 0.00 3.74
1135 3166 3.019564 GCTTGTGATTCCCTGCATACTT 58.980 45.455 0.00 0.00 0.00 2.24
1143 3179 4.689612 TTCCCTGCATACTTAAGCTAGG 57.310 45.455 1.29 3.56 0.00 3.02
1329 3371 3.414700 CCGCCTGAAGTGCACGTC 61.415 66.667 23.70 23.70 0.00 4.34
1359 3406 2.098233 GCCGGCGAAACGAATCTGA 61.098 57.895 12.58 0.00 35.47 3.27
1464 3676 2.821546 TCGTGCTCGCTAAATATGCTT 58.178 42.857 2.69 0.00 36.96 3.91
1465 3677 2.539688 TCGTGCTCGCTAAATATGCTTG 59.460 45.455 2.69 0.00 36.96 4.01
1507 3723 9.472361 GTTGCCTACTCGTATAGATATTGAAAA 57.528 33.333 0.00 0.00 0.00 2.29
1526 3746 5.337578 AAAAGTAGGCTTGTGCTTTTCAA 57.662 34.783 0.00 0.00 36.73 2.69
1527 3747 4.574599 AAGTAGGCTTGTGCTTTTCAAG 57.425 40.909 0.00 0.00 43.31 3.02
1528 3748 3.555966 AGTAGGCTTGTGCTTTTCAAGT 58.444 40.909 0.00 0.00 42.67 3.16
1529 3749 3.954258 AGTAGGCTTGTGCTTTTCAAGTT 59.046 39.130 0.00 0.75 42.67 2.66
1530 3750 3.893326 AGGCTTGTGCTTTTCAAGTTT 57.107 38.095 7.35 0.00 42.67 2.66
1531 3751 4.206477 AGGCTTGTGCTTTTCAAGTTTT 57.794 36.364 7.35 0.00 42.67 2.43
1532 3752 4.183865 AGGCTTGTGCTTTTCAAGTTTTC 58.816 39.130 7.35 0.00 42.67 2.29
1533 3753 3.932089 GGCTTGTGCTTTTCAAGTTTTCA 59.068 39.130 7.35 0.00 42.67 2.69
1534 3754 4.571984 GGCTTGTGCTTTTCAAGTTTTCAT 59.428 37.500 7.35 0.00 42.67 2.57
1535 3755 5.277011 GGCTTGTGCTTTTCAAGTTTTCATC 60.277 40.000 7.35 0.00 42.67 2.92
1536 3756 5.555069 GCTTGTGCTTTTCAAGTTTTCATCG 60.555 40.000 7.35 0.00 42.67 3.84
1537 3757 5.242069 TGTGCTTTTCAAGTTTTCATCGA 57.758 34.783 0.00 0.00 0.00 3.59
1538 3758 5.034152 TGTGCTTTTCAAGTTTTCATCGAC 58.966 37.500 0.00 0.00 0.00 4.20
1539 3759 4.441087 GTGCTTTTCAAGTTTTCATCGACC 59.559 41.667 0.00 0.00 0.00 4.79
1540 3760 4.097135 TGCTTTTCAAGTTTTCATCGACCA 59.903 37.500 0.00 0.00 0.00 4.02
1541 3761 4.676924 GCTTTTCAAGTTTTCATCGACCAG 59.323 41.667 0.00 0.00 0.00 4.00
1615 4004 0.984230 TCTGAGACCGGCCTTCAATT 59.016 50.000 0.00 0.00 0.00 2.32
1724 4119 6.962686 TCATTGCATGCTCTTGTATATGTTC 58.037 36.000 20.33 0.00 0.00 3.18
1783 4183 2.675348 GCATCTGGTAAGAGTCAACAGC 59.325 50.000 0.00 0.00 35.37 4.40
1832 4265 7.591057 TGTTGATTTTTCTTACAGCAGAATTCG 59.409 33.333 0.00 0.00 32.69 3.34
1864 4299 7.877097 CCTTCCACAAATCTTCTCTCCTATATG 59.123 40.741 0.00 0.00 0.00 1.78
2009 4450 3.559811 GGAGGGAGTAGCTAGTAGCCTAC 60.560 56.522 18.65 17.79 43.77 3.18
2061 4526 6.806388 TTATGCATTCAGCTATATGGTGTG 57.194 37.500 3.54 0.00 45.94 3.82
2132 4624 6.604171 ACATCTGCCCACATTCATATTTCTA 58.396 36.000 0.00 0.00 0.00 2.10
2289 4781 0.557238 TATACACAGGCCCGGTCCTA 59.443 55.000 2.27 0.00 33.95 2.94
2299 4792 1.064979 GCCCGGTCCTAAGATTTTGGA 60.065 52.381 0.00 0.00 0.00 3.53
2308 4801 1.800229 AAGATTTTGGAGCCCGGGGT 61.800 55.000 28.94 28.94 0.00 4.95
2309 4802 2.037208 ATTTTGGAGCCCGGGGTG 59.963 61.111 34.05 0.00 0.00 4.61
2398 4891 5.853282 GTCGAAAGAAAGATGAACATGGTTG 59.147 40.000 0.00 0.00 45.01 3.77
2440 4933 4.329545 GAGGTGGCCGCTGGACAA 62.330 66.667 17.49 0.00 45.35 3.18
2488 4986 0.388520 CTCATTGTGGTCGCGTGAGA 60.389 55.000 13.57 0.00 38.81 3.27
2497 4995 0.730265 GTCGCGTGAGAGAGTGATCT 59.270 55.000 5.77 0.00 41.70 2.75
2536 5034 5.371526 GGAGCATAGGAGATCAAACATTGA 58.628 41.667 0.00 0.00 45.01 2.57
2540 5038 3.703001 AGGAGATCAAACATTGACCGT 57.297 42.857 0.00 0.00 43.48 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 900 6.066690 CCTCCTCAAACATCCATGAACATAT 58.933 40.000 0.00 0.00 0.00 1.78
47 901 5.191522 TCCTCCTCAAACATCCATGAACATA 59.808 40.000 0.00 0.00 0.00 2.29
55 909 4.289410 TCTCAAATCCTCCTCAAACATCCA 59.711 41.667 0.00 0.00 0.00 3.41
265 2201 0.042188 CGTGCTGTGAACAAAGACGG 60.042 55.000 0.00 0.00 0.00 4.79
281 2224 2.452813 GCCACACCAGCGATACGTG 61.453 63.158 0.00 0.00 0.00 4.49
450 2424 1.948145 GCTAGCTAGCTAGAACCGTCA 59.052 52.381 42.59 15.67 46.56 4.35
475 2457 2.901042 GAGCTAACGGGAGGTGGG 59.099 66.667 0.00 0.00 0.00 4.61
604 2588 4.767255 CTGACAGGTGAGCGCCCC 62.767 72.222 2.29 1.07 0.00 5.80
609 2593 3.965539 ATGCCGCTGACAGGTGAGC 62.966 63.158 4.26 0.49 36.45 4.26
610 2594 2.104859 CATGCCGCTGACAGGTGAG 61.105 63.158 4.26 0.00 0.00 3.51
611 2595 2.046988 CATGCCGCTGACAGGTGA 60.047 61.111 4.26 0.00 0.00 4.02
612 2596 3.129502 CCATGCCGCTGACAGGTG 61.130 66.667 4.26 0.00 0.00 4.00
644 2628 4.463879 CAGTCAGCAGCCGGGGAG 62.464 72.222 2.18 0.00 0.00 4.30
652 2636 3.720193 GTGGCGCACAGTCAGCAG 61.720 66.667 10.83 0.00 33.59 4.24
694 2678 3.237741 CGAGGAGGATGGAGGGCC 61.238 72.222 0.00 0.00 0.00 5.80
695 2679 3.934962 GCGAGGAGGATGGAGGGC 61.935 72.222 0.00 0.00 0.00 5.19
696 2680 3.610669 CGCGAGGAGGATGGAGGG 61.611 72.222 0.00 0.00 0.00 4.30
697 2681 1.467678 AATCGCGAGGAGGATGGAGG 61.468 60.000 16.66 0.00 0.00 4.30
698 2682 0.038709 GAATCGCGAGGAGGATGGAG 60.039 60.000 16.66 0.00 0.00 3.86
699 2683 1.464376 GGAATCGCGAGGAGGATGGA 61.464 60.000 16.66 0.00 0.00 3.41
700 2684 1.005630 GGAATCGCGAGGAGGATGG 60.006 63.158 16.66 0.00 0.00 3.51
701 2685 0.390860 AAGGAATCGCGAGGAGGATG 59.609 55.000 16.66 0.00 0.00 3.51
702 2686 0.676736 GAAGGAATCGCGAGGAGGAT 59.323 55.000 16.66 0.00 0.00 3.24
703 2687 1.392710 GGAAGGAATCGCGAGGAGGA 61.393 60.000 16.66 0.00 0.00 3.71
704 2688 1.068250 GGAAGGAATCGCGAGGAGG 59.932 63.158 16.66 0.00 0.00 4.30
929 2914 2.644418 GAAATGTGGCAGCACGCA 59.356 55.556 0.00 0.00 45.17 5.24
936 2921 0.178938 ATGTGTGGGGAAATGTGGCA 60.179 50.000 0.00 0.00 0.00 4.92
1004 2992 2.408050 CTAGCTGTGTTGGTGTCTGAC 58.592 52.381 0.00 0.00 0.00 3.51
1044 3032 4.100084 TGGGCAGTGGCGATCTGG 62.100 66.667 10.99 0.00 42.47 3.86
1046 3034 3.005539 AGTGGGCAGTGGCGATCT 61.006 61.111 10.99 5.90 42.47 2.75
1047 3035 2.821366 CAGTGGGCAGTGGCGATC 60.821 66.667 10.99 3.61 42.47 3.69
1057 3045 2.045926 CTGGTACTGGCAGTGGGC 60.046 66.667 29.65 18.18 43.74 5.36
1058 3046 1.264749 TAGCTGGTACTGGCAGTGGG 61.265 60.000 29.65 16.40 0.00 4.61
1135 3166 1.202533 GCGCCATGAGAACCTAGCTTA 60.203 52.381 0.00 0.00 0.00 3.09
1170 3209 2.022129 CTTGGACGACGTGGCTCAC 61.022 63.158 4.58 0.00 0.00 3.51
1246 3288 3.861797 CCTTCCTATGCCGCCCGT 61.862 66.667 0.00 0.00 0.00 5.28
1359 3406 2.282462 CTCTTGGCGGGCAGGTTT 60.282 61.111 13.23 0.00 0.00 3.27
1464 3676 3.541632 GCAACTAGGCATAGCTAAACCA 58.458 45.455 15.63 3.77 31.66 3.67
1465 3677 2.879026 GGCAACTAGGCATAGCTAAACC 59.121 50.000 5.07 1.97 43.51 3.27
1526 3746 2.851195 ACAAGCTGGTCGATGAAAACT 58.149 42.857 0.00 0.00 0.00 2.66
1527 3747 3.626028 AACAAGCTGGTCGATGAAAAC 57.374 42.857 0.00 0.00 0.00 2.43
1528 3748 4.213270 CAGTAACAAGCTGGTCGATGAAAA 59.787 41.667 0.00 0.00 0.00 2.29
1529 3749 3.745975 CAGTAACAAGCTGGTCGATGAAA 59.254 43.478 0.00 0.00 0.00 2.69
1530 3750 3.325870 CAGTAACAAGCTGGTCGATGAA 58.674 45.455 0.00 0.00 0.00 2.57
1531 3751 2.930887 GCAGTAACAAGCTGGTCGATGA 60.931 50.000 0.00 0.00 34.73 2.92
1532 3752 1.394917 GCAGTAACAAGCTGGTCGATG 59.605 52.381 0.00 0.00 34.73 3.84
1533 3753 1.001974 TGCAGTAACAAGCTGGTCGAT 59.998 47.619 0.00 0.00 34.73 3.59
1534 3754 0.391228 TGCAGTAACAAGCTGGTCGA 59.609 50.000 0.00 0.00 34.73 4.20
1535 3755 1.225855 TTGCAGTAACAAGCTGGTCG 58.774 50.000 0.00 0.00 34.73 4.79
1536 3756 5.371115 TTTATTGCAGTAACAAGCTGGTC 57.629 39.130 0.46 0.00 34.73 4.02
1537 3757 5.301805 AGTTTTATTGCAGTAACAAGCTGGT 59.698 36.000 0.46 0.00 34.73 4.00
1538 3758 5.630680 CAGTTTTATTGCAGTAACAAGCTGG 59.369 40.000 0.46 0.00 34.73 4.85
1539 3759 6.437928 TCAGTTTTATTGCAGTAACAAGCTG 58.562 36.000 0.46 6.24 37.06 4.24
1540 3760 6.633500 TCAGTTTTATTGCAGTAACAAGCT 57.367 33.333 0.46 0.00 31.96 3.74
1541 3761 9.226345 GATATCAGTTTTATTGCAGTAACAAGC 57.774 33.333 0.46 0.00 31.96 4.01
1570 3959 8.851145 ACAGTAAGGTAGTGATGTATACTGATG 58.149 37.037 14.79 0.00 40.56 3.07
1576 3965 8.491958 TCTCAGACAGTAAGGTAGTGATGTATA 58.508 37.037 0.00 0.00 33.36 1.47
1577 3966 7.283580 GTCTCAGACAGTAAGGTAGTGATGTAT 59.716 40.741 0.00 0.00 33.36 2.29
1638 4027 5.079406 CGAAAATTTGTGATGTACGGAGTG 58.921 41.667 0.00 0.00 45.73 3.51
1681 4070 1.470098 GATTCGGCAGAGCAACAACAT 59.530 47.619 0.00 0.00 0.00 2.71
1724 4119 2.241722 CGAGCACCAAAAGTTTATGCG 58.758 47.619 11.59 0.00 36.86 4.73
1783 4183 4.141959 ACAAAATGAAATTGGATAGCCGGG 60.142 41.667 2.18 0.00 36.10 5.73
1832 4265 7.043961 AGAGAAGATTTGTGGAAGGAAAAAC 57.956 36.000 0.00 0.00 0.00 2.43
1905 4340 2.412870 TCAGCAAAGTGTGGTCGTATG 58.587 47.619 0.00 0.00 35.13 2.39
2233 4725 8.585018 ACATATCCAATGATCGACACAACTATA 58.415 33.333 0.00 0.00 32.18 1.31
2234 4726 7.445121 ACATATCCAATGATCGACACAACTAT 58.555 34.615 0.00 0.00 32.18 2.12
2235 4727 6.816136 ACATATCCAATGATCGACACAACTA 58.184 36.000 0.00 0.00 32.18 2.24
2236 4728 5.674525 ACATATCCAATGATCGACACAACT 58.325 37.500 0.00 0.00 32.18 3.16
2237 4729 5.991328 ACATATCCAATGATCGACACAAC 57.009 39.130 0.00 0.00 32.18 3.32
2238 4730 6.112058 TGAACATATCCAATGATCGACACAA 58.888 36.000 0.00 0.00 32.18 3.33
2289 4781 1.000359 CCCCGGGCTCCAAAATCTT 60.000 57.895 17.73 0.00 0.00 2.40
2299 4792 0.996583 TTCTAATTTCACCCCGGGCT 59.003 50.000 17.73 0.00 0.00 5.19
2308 4801 5.466127 AAGGGGCCTACATTCTAATTTCA 57.534 39.130 0.84 0.00 0.00 2.69
2309 4802 7.891498 TTTAAGGGGCCTACATTCTAATTTC 57.109 36.000 0.84 0.00 0.00 2.17
2398 4891 3.245519 GGAAGCGATTTCGAAGATGGTAC 59.754 47.826 3.77 0.00 43.02 3.34
2437 4930 0.824759 GATAGGAGACCGCACCTTGT 59.175 55.000 0.00 0.00 36.45 3.16
2440 4933 3.843304 CGATAGGAGACCGCACCT 58.157 61.111 0.00 0.00 38.70 4.00
2488 4986 6.601613 CCTAGCCGAATATTCTAGATCACTCT 59.398 42.308 13.45 0.24 33.44 3.24
2536 5034 0.107831 TTGTCCTGCTGCTTAACGGT 59.892 50.000 0.00 0.00 0.00 4.83
2540 5038 3.650647 CCCTTGTCCTGCTGCTTAA 57.349 52.632 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.