Multiple sequence alignment - TraesCS3B01G080100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G080100 chr3B 100.000 2648 0 0 1 2648 50655436 50652789 0.000000e+00 4891.0
1 TraesCS3B01G080100 chr3B 87.234 1175 97 30 224 1365 50942332 50943486 0.000000e+00 1290.0
2 TraesCS3B01G080100 chr3B 92.542 885 48 7 1 878 50960557 50959684 0.000000e+00 1253.0
3 TraesCS3B01G080100 chr3B 88.677 733 46 14 680 1381 50959693 50958967 0.000000e+00 859.0
4 TraesCS3B01G080100 chr3B 86.495 311 22 9 1901 2195 50943710 50944016 9.140000e-85 324.0
5 TraesCS3B01G080100 chr3B 93.413 167 11 0 1737 1903 263271168 263271002 5.660000e-62 248.0
6 TraesCS3B01G080100 chr3B 91.111 135 7 5 1376 1506 760589116 760588983 7.530000e-41 178.0
7 TraesCS3B01G080100 chr3B 90.977 133 9 3 1377 1507 793003108 793003239 2.710000e-40 176.0
8 TraesCS3B01G080100 chr3B 75.719 313 43 21 1903 2195 421531268 421530969 2.770000e-25 126.0
9 TraesCS3B01G080100 chr3B 80.838 167 9 9 1520 1663 50943494 50943660 2.790000e-20 110.0
10 TraesCS3B01G080100 chr3B 78.723 188 17 12 1520 1687 50958957 50958773 1.300000e-18 104.0
11 TraesCS3B01G080100 chr3A 87.554 1390 114 25 1 1381 40557153 40555814 0.000000e+00 1554.0
12 TraesCS3B01G080100 chr3A 85.930 1059 84 29 352 1375 40390722 40389694 0.000000e+00 1070.0
13 TraesCS3B01G080100 chr3A 86.306 314 19 9 1901 2195 40555508 40555200 1.180000e-83 320.0
14 TraesCS3B01G080100 chr3A 90.066 151 9 4 2028 2173 40389290 40389141 9.670000e-45 191.0
15 TraesCS3B01G080100 chr3A 83.553 152 10 3 1589 1729 40555665 40555518 7.690000e-26 128.0
16 TraesCS3B01G080100 chr3A 75.719 313 43 21 1903 2195 436273266 436272967 2.770000e-25 126.0
17 TraesCS3B01G080100 chr3A 78.000 250 18 18 1520 1744 436273597 436273360 3.580000e-24 122.0
18 TraesCS3B01G080100 chr3A 80.838 167 9 9 1520 1663 40389685 40389519 2.790000e-20 110.0
19 TraesCS3B01G080100 chr3A 86.905 84 6 2 1901 1983 436273360 436273281 3.630000e-14 89.8
20 TraesCS3B01G080100 chr3A 84.337 83 1 6 1504 1574 40555816 40555734 1.320000e-08 71.3
21 TraesCS3B01G080100 chr3D 86.434 1091 75 28 336 1381 29813144 29812082 0.000000e+00 1127.0
22 TraesCS3B01G080100 chr3D 89.069 924 57 16 415 1314 29862118 29861215 0.000000e+00 1107.0
23 TraesCS3B01G080100 chr3D 87.769 883 70 15 520 1381 29801446 29800581 0.000000e+00 998.0
24 TraesCS3B01G080100 chr3D 90.688 741 47 7 631 1355 29790155 29789421 0.000000e+00 966.0
25 TraesCS3B01G080100 chr3D 80.134 1042 112 56 374 1356 299744495 299745500 0.000000e+00 689.0
26 TraesCS3B01G080100 chr3D 87.898 314 15 8 1901 2195 29811824 29811515 5.420000e-92 348.0
27 TraesCS3B01G080100 chr3D 79.837 367 42 18 233 593 29790502 29790162 3.410000e-59 239.0
28 TraesCS3B01G080100 chr3D 93.210 162 11 0 1741 1902 410670224 410670063 3.410000e-59 239.0
29 TraesCS3B01G080100 chr3D 90.909 132 8 4 1377 1505 236672423 236672553 9.740000e-40 174.0
30 TraesCS3B01G080100 chr3D 89.744 117 7 1 1576 1687 29861122 29861006 7.640000e-31 145.0
31 TraesCS3B01G080100 chr3D 88.034 117 8 3 1596 1706 29789198 29789082 1.650000e-27 134.0
32 TraesCS3B01G080100 chr3D 78.800 250 16 16 1520 1744 299745624 299745861 1.650000e-27 134.0
33 TraesCS3B01G080100 chr3D 81.366 161 15 9 2042 2195 299746100 299746252 1.670000e-22 117.0
34 TraesCS3B01G080100 chr7B 90.098 717 46 10 677 1373 707946989 707946278 0.000000e+00 907.0
35 TraesCS3B01G080100 chr7B 95.133 452 20 2 2197 2648 501778303 501777854 0.000000e+00 712.0
36 TraesCS3B01G080100 chr7B 94.481 453 25 0 2196 2648 616758446 616758898 0.000000e+00 699.0
37 TraesCS3B01G080100 chr7B 91.791 268 11 2 1901 2157 707946052 707945785 1.940000e-96 363.0
38 TraesCS3B01G080100 chr7B 92.638 163 12 0 1740 1902 131081709 131081547 4.410000e-58 235.0
39 TraesCS3B01G080100 chr7B 90.909 132 8 4 1381 1509 72021755 72021885 9.740000e-40 174.0
40 TraesCS3B01G080100 chr7B 88.732 142 12 3 1378 1516 311539751 311539611 1.260000e-38 171.0
41 TraesCS3B01G080100 chrUn 97.111 450 13 0 2199 2648 48652651 48652202 0.000000e+00 760.0
42 TraesCS3B01G080100 chrUn 96.247 453 17 0 2196 2648 185212930 185212478 0.000000e+00 743.0
43 TraesCS3B01G080100 chr4A 96.689 453 13 2 2196 2648 738577161 738576711 0.000000e+00 752.0
44 TraesCS3B01G080100 chr4A 94.923 453 22 1 2196 2648 686548214 686547763 0.000000e+00 708.0
45 TraesCS3B01G080100 chr6B 95.364 453 21 0 2196 2648 31717399 31717851 0.000000e+00 721.0
46 TraesCS3B01G080100 chr6B 95.364 453 20 1 2196 2648 561020981 561020530 0.000000e+00 719.0
47 TraesCS3B01G080100 chr6B 89.928 139 10 3 1377 1512 120808767 120808904 2.710000e-40 176.0
48 TraesCS3B01G080100 chr4B 94.702 453 24 0 2196 2648 27288313 27288765 0.000000e+00 704.0
49 TraesCS3B01G080100 chr4B 90.341 176 13 3 1733 1906 437160910 437161083 7.370000e-56 228.0
50 TraesCS3B01G080100 chr7D 91.329 173 15 0 1730 1902 414094944 414094772 1.230000e-58 237.0
51 TraesCS3B01G080100 chr2D 92.638 163 12 0 1741 1903 56540995 56541157 4.410000e-58 235.0
52 TraesCS3B01G080100 chr1D 92.216 167 12 1 1740 1906 37884066 37883901 4.410000e-58 235.0
53 TraesCS3B01G080100 chr7A 92.169 166 12 1 1737 1902 206711954 206712118 1.580000e-57 233.0
54 TraesCS3B01G080100 chr7A 100.000 30 0 0 52 81 152508655 152508626 3.680000e-04 56.5
55 TraesCS3B01G080100 chr1B 91.228 171 14 1 1741 1911 645897499 645897330 5.700000e-57 231.0
56 TraesCS3B01G080100 chr2B 92.248 129 6 4 1380 1505 677014527 677014654 2.090000e-41 180.0
57 TraesCS3B01G080100 chr5B 90.769 130 8 4 1381 1507 96878943 96879071 1.260000e-38 171.0
58 TraesCS3B01G080100 chr5B 88.732 142 12 4 1376 1514 557532297 557532157 1.260000e-38 171.0
59 TraesCS3B01G080100 chr2A 79.808 104 21 0 1 104 583814534 583814637 2.830000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G080100 chr3B 50652789 50655436 2647 True 4891.000000 4891 100.000000 1 2648 1 chr3B.!!$R1 2647
1 TraesCS3B01G080100 chr3B 50958773 50960557 1784 True 738.666667 1253 86.647333 1 1687 3 chr3B.!!$R5 1686
2 TraesCS3B01G080100 chr3B 50942332 50944016 1684 False 574.666667 1290 84.855667 224 2195 3 chr3B.!!$F2 1971
3 TraesCS3B01G080100 chr3A 40555200 40557153 1953 True 518.325000 1554 85.437500 1 2195 4 chr3A.!!$R2 2194
4 TraesCS3B01G080100 chr3A 40389141 40390722 1581 True 457.000000 1070 85.611333 352 2173 3 chr3A.!!$R1 1821
5 TraesCS3B01G080100 chr3D 29800581 29801446 865 True 998.000000 998 87.769000 520 1381 1 chr3D.!!$R1 861
6 TraesCS3B01G080100 chr3D 29811515 29813144 1629 True 737.500000 1127 87.166000 336 2195 2 chr3D.!!$R4 1859
7 TraesCS3B01G080100 chr3D 29861006 29862118 1112 True 626.000000 1107 89.406500 415 1687 2 chr3D.!!$R5 1272
8 TraesCS3B01G080100 chr3D 29789082 29790502 1420 True 446.333333 966 86.186333 233 1706 3 chr3D.!!$R3 1473
9 TraesCS3B01G080100 chr3D 299744495 299746252 1757 False 313.333333 689 80.100000 374 2195 3 chr3D.!!$F2 1821
10 TraesCS3B01G080100 chr7B 707945785 707946989 1204 True 635.000000 907 90.944500 677 2157 2 chr7B.!!$R4 1480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 567 0.247736 GCCGGAGAGAAGAAGCAGAA 59.752 55.0 5.05 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2360 3078 0.035725 AGGCGTAACTTGGGGTAAGC 60.036 55.0 0.0 0.0 40.16 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 7.428282 TTTATGTGTGTATGTTCACGTTGAT 57.572 32.000 0.00 0.00 40.74 2.57
107 108 6.747125 TGAATTTGTGCTCATTGTGTTACAT 58.253 32.000 0.00 0.00 0.00 2.29
108 109 7.880105 TGAATTTGTGCTCATTGTGTTACATA 58.120 30.769 0.00 0.00 0.00 2.29
109 110 8.522003 TGAATTTGTGCTCATTGTGTTACATAT 58.478 29.630 0.00 0.00 0.00 1.78
110 111 9.357652 GAATTTGTGCTCATTGTGTTACATATT 57.642 29.630 0.00 10.43 0.00 1.28
111 112 8.915871 ATTTGTGCTCATTGTGTTACATATTC 57.084 30.769 0.00 0.00 0.00 1.75
112 113 7.686438 TTGTGCTCATTGTGTTACATATTCT 57.314 32.000 0.00 0.00 0.00 2.40
113 114 8.785329 TTGTGCTCATTGTGTTACATATTCTA 57.215 30.769 0.00 0.00 0.00 2.10
114 115 8.785329 TGTGCTCATTGTGTTACATATTCTAA 57.215 30.769 0.00 0.00 0.00 2.10
115 116 8.664798 TGTGCTCATTGTGTTACATATTCTAAC 58.335 33.333 0.00 0.00 0.00 2.34
116 117 8.883731 GTGCTCATTGTGTTACATATTCTAACT 58.116 33.333 0.00 0.00 0.00 2.24
229 233 9.020813 TCTTTTATTCTCTCATGTTCGATTACG 57.979 33.333 0.00 0.00 41.26 3.18
259 265 3.201353 TGTTCACGGATGTTTGAGGAA 57.799 42.857 0.00 0.00 0.00 3.36
295 301 3.670895 CGGCCGTAGATGCTATTACTCTG 60.671 52.174 19.50 0.00 0.00 3.35
530 567 0.247736 GCCGGAGAGAAGAAGCAGAA 59.752 55.000 5.05 0.00 0.00 3.02
638 713 4.098654 GCTAAAGACTCCTAGTGATCTGCA 59.901 45.833 0.00 0.00 0.00 4.41
734 813 2.995574 CCTTCCTCCACGTCGGGT 60.996 66.667 0.00 0.00 34.36 5.28
786 867 1.596934 CCACTGGCATGTAGACCGT 59.403 57.895 6.18 0.00 0.00 4.83
855 1127 4.320456 CCCGGCTGCTGACTGTGT 62.320 66.667 10.70 0.00 0.00 3.72
980 1253 2.355412 GCCGTCCTATAAAACCCACACT 60.355 50.000 0.00 0.00 0.00 3.55
1051 1360 2.489275 CCACCAACACCACTGCCAC 61.489 63.158 0.00 0.00 0.00 5.01
1082 1423 1.725557 TAGCCTGCGCTTAGACCTCG 61.726 60.000 9.73 0.00 45.55 4.63
1085 1426 1.377366 CCTGCGCTTAGACCTCGAGA 61.377 60.000 15.71 0.00 0.00 4.04
1373 1832 2.664402 AGCATGAATGTATCCACCCC 57.336 50.000 0.00 0.00 0.00 4.95
1381 1840 7.998383 GCATGAATGTATCCACCCCAATATATA 59.002 37.037 0.00 0.00 0.00 0.86
1382 1841 9.342308 CATGAATGTATCCACCCCAATATATAC 57.658 37.037 0.00 0.00 0.00 1.47
1383 1842 8.694171 TGAATGTATCCACCCCAATATATACT 57.306 34.615 0.00 0.00 0.00 2.12
1384 1843 8.768397 TGAATGTATCCACCCCAATATATACTC 58.232 37.037 0.00 0.00 0.00 2.59
1386 1845 5.968167 TGTATCCACCCCAATATATACTCCC 59.032 44.000 0.00 0.00 0.00 4.30
1387 1846 4.796185 TCCACCCCAATATATACTCCCT 57.204 45.455 0.00 0.00 0.00 4.20
1388 1847 4.695606 TCCACCCCAATATATACTCCCTC 58.304 47.826 0.00 0.00 0.00 4.30
1389 1848 3.780850 CCACCCCAATATATACTCCCTCC 59.219 52.174 0.00 0.00 0.00 4.30
1390 1849 3.451178 CACCCCAATATATACTCCCTCCG 59.549 52.174 0.00 0.00 0.00 4.63
1391 1850 3.078612 ACCCCAATATATACTCCCTCCGT 59.921 47.826 0.00 0.00 0.00 4.69
1392 1851 3.705072 CCCCAATATATACTCCCTCCGTC 59.295 52.174 0.00 0.00 0.00 4.79
1393 1852 3.705072 CCCAATATATACTCCCTCCGTCC 59.295 52.174 0.00 0.00 0.00 4.79
1394 1853 3.380637 CCAATATATACTCCCTCCGTCCG 59.619 52.174 0.00 0.00 0.00 4.79
1395 1854 2.795231 TATATACTCCCTCCGTCCGG 57.205 55.000 0.00 0.00 0.00 5.14
1396 1855 0.039326 ATATACTCCCTCCGTCCGGG 59.961 60.000 0.00 0.00 43.38 5.73
1401 1860 3.001406 CCCTCCGTCCGGGAACTT 61.001 66.667 0.00 0.00 46.61 2.66
1402 1861 2.264794 CCTCCGTCCGGGAACTTG 59.735 66.667 0.00 0.00 46.61 3.16
1403 1862 2.580601 CCTCCGTCCGGGAACTTGT 61.581 63.158 0.00 0.00 46.61 3.16
1404 1863 1.080025 CTCCGTCCGGGAACTTGTC 60.080 63.158 0.00 0.00 46.61 3.18
1405 1864 1.812686 CTCCGTCCGGGAACTTGTCA 61.813 60.000 0.00 0.00 46.61 3.58
1406 1865 1.189524 TCCGTCCGGGAACTTGTCAT 61.190 55.000 0.00 0.00 43.62 3.06
1407 1866 0.739813 CCGTCCGGGAACTTGTCATC 60.740 60.000 0.00 0.00 38.47 2.92
1408 1867 0.037697 CGTCCGGGAACTTGTCATCA 60.038 55.000 0.00 0.00 0.00 3.07
1409 1868 1.606994 CGTCCGGGAACTTGTCATCAA 60.607 52.381 0.00 0.00 0.00 2.57
1410 1869 2.500229 GTCCGGGAACTTGTCATCAAA 58.500 47.619 0.00 0.00 32.87 2.69
1411 1870 2.882137 GTCCGGGAACTTGTCATCAAAA 59.118 45.455 0.00 0.00 32.87 2.44
1412 1871 3.316868 GTCCGGGAACTTGTCATCAAAAA 59.683 43.478 0.00 0.00 32.87 1.94
1413 1872 4.022329 GTCCGGGAACTTGTCATCAAAAAT 60.022 41.667 0.00 0.00 32.87 1.82
1414 1873 4.022416 TCCGGGAACTTGTCATCAAAAATG 60.022 41.667 0.00 0.00 32.87 2.32
1415 1874 4.022416 CCGGGAACTTGTCATCAAAAATGA 60.022 41.667 0.00 0.00 32.87 2.57
1416 1875 5.508825 CCGGGAACTTGTCATCAAAAATGAA 60.509 40.000 0.00 0.00 32.87 2.57
1417 1876 6.158598 CGGGAACTTGTCATCAAAAATGAAT 58.841 36.000 0.00 0.00 32.87 2.57
1418 1877 7.312154 CGGGAACTTGTCATCAAAAATGAATA 58.688 34.615 0.00 0.00 32.87 1.75
1419 1878 7.485913 CGGGAACTTGTCATCAAAAATGAATAG 59.514 37.037 0.00 0.00 32.87 1.73
1420 1879 8.522830 GGGAACTTGTCATCAAAAATGAATAGA 58.477 33.333 0.00 0.00 32.87 1.98
1421 1880 9.912634 GGAACTTGTCATCAAAAATGAATAGAA 57.087 29.630 0.00 0.00 32.87 2.10
1423 1882 9.918630 AACTTGTCATCAAAAATGAATAGAAGG 57.081 29.630 0.00 0.00 32.87 3.46
1424 1883 9.300681 ACTTGTCATCAAAAATGAATAGAAGGA 57.699 29.630 0.00 0.00 32.87 3.36
1425 1884 9.784680 CTTGTCATCAAAAATGAATAGAAGGAG 57.215 33.333 0.00 0.00 32.87 3.69
1426 1885 9.519191 TTGTCATCAAAAATGAATAGAAGGAGA 57.481 29.630 0.00 0.00 0.00 3.71
1427 1886 9.690913 TGTCATCAAAAATGAATAGAAGGAGAT 57.309 29.630 0.00 0.00 0.00 2.75
1428 1887 9.947669 GTCATCAAAAATGAATAGAAGGAGATG 57.052 33.333 0.00 0.00 0.00 2.90
1429 1888 9.690913 TCATCAAAAATGAATAGAAGGAGATGT 57.309 29.630 0.00 0.00 32.23 3.06
1439 1898 9.552695 TGAATAGAAGGAGATGTATCCATATGT 57.447 33.333 1.24 0.00 42.26 2.29
1481 1940 8.814931 ACATCCTTTTTATCCATTTTGATGACA 58.185 29.630 0.00 0.00 33.22 3.58
1482 1941 9.656040 CATCCTTTTTATCCATTTTGATGACAA 57.344 29.630 0.00 0.00 31.12 3.18
1483 1942 9.880157 ATCCTTTTTATCCATTTTGATGACAAG 57.120 29.630 0.00 0.00 37.32 3.16
1484 1943 8.869109 TCCTTTTTATCCATTTTGATGACAAGT 58.131 29.630 0.00 0.00 37.32 3.16
1491 1950 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
1492 1951 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
1493 1952 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
1494 1953 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
1495 1954 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1496 1955 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1497 1956 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1498 1957 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1499 1958 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1500 1959 2.301009 ACAAGTATTTTCGGACGGAGGT 59.699 45.455 0.00 0.00 0.00 3.85
1501 1960 3.511146 ACAAGTATTTTCGGACGGAGGTA 59.489 43.478 0.00 0.00 0.00 3.08
1502 1961 4.110482 CAAGTATTTTCGGACGGAGGTAG 58.890 47.826 0.00 0.00 0.00 3.18
1503 1962 3.359950 AGTATTTTCGGACGGAGGTAGT 58.640 45.455 0.00 0.00 0.00 2.73
1504 1963 4.526970 AGTATTTTCGGACGGAGGTAGTA 58.473 43.478 0.00 0.00 0.00 1.82
1505 1964 5.136105 AGTATTTTCGGACGGAGGTAGTAT 58.864 41.667 0.00 0.00 0.00 2.12
1506 1965 3.788333 TTTTCGGACGGAGGTAGTATG 57.212 47.619 0.00 0.00 0.00 2.39
1507 1966 2.715749 TTCGGACGGAGGTAGTATGA 57.284 50.000 0.00 0.00 0.00 2.15
1508 1967 2.251409 TCGGACGGAGGTAGTATGAG 57.749 55.000 0.00 0.00 0.00 2.90
1509 1968 1.764723 TCGGACGGAGGTAGTATGAGA 59.235 52.381 0.00 0.00 0.00 3.27
1510 1969 1.872313 CGGACGGAGGTAGTATGAGAC 59.128 57.143 0.00 0.00 0.00 3.36
1511 1970 2.744166 CGGACGGAGGTAGTATGAGACA 60.744 54.545 0.00 0.00 0.00 3.41
1512 1971 2.879646 GGACGGAGGTAGTATGAGACAG 59.120 54.545 0.00 0.00 0.00 3.51
1513 1972 3.543665 GACGGAGGTAGTATGAGACAGT 58.456 50.000 0.00 0.00 0.00 3.55
1518 1977 4.521256 GGAGGTAGTATGAGACAGTGATCC 59.479 50.000 0.00 0.00 0.00 3.36
1577 2048 1.823797 TAATTAACCCACCGTGTGCC 58.176 50.000 0.00 0.00 31.34 5.01
1582 2053 4.690719 CCCACCGTGTGCCGCTTA 62.691 66.667 0.00 0.00 34.38 3.09
1583 2054 2.666862 CCACCGTGTGCCGCTTAA 60.667 61.111 0.00 0.00 34.38 1.85
1585 2056 1.582610 CCACCGTGTGCCGCTTAATT 61.583 55.000 0.00 0.00 34.38 1.40
1592 2122 3.000925 CGTGTGCCGCTTAATTAACCTAG 59.999 47.826 0.00 0.00 0.00 3.02
1694 2257 5.174398 CACTACCTTACTGTTTGTGTACGTG 59.826 44.000 0.00 0.00 0.00 4.49
1707 2270 0.232303 GTACGTGTGTGCTGTTGCTC 59.768 55.000 0.00 0.00 40.48 4.26
1708 2271 1.212455 TACGTGTGTGCTGTTGCTCG 61.212 55.000 0.00 0.00 40.48 5.03
1709 2272 2.237066 CGTGTGTGCTGTTGCTCGA 61.237 57.895 0.00 0.00 40.48 4.04
1710 2273 1.560004 CGTGTGTGCTGTTGCTCGAT 61.560 55.000 0.00 0.00 40.48 3.59
1729 2292 0.748729 TCTGCCGATCATTGCATGCA 60.749 50.000 18.46 18.46 36.79 3.96
1730 2293 0.313987 CTGCCGATCATTGCATGCAT 59.686 50.000 23.37 6.15 36.79 3.96
1731 2294 0.031449 TGCCGATCATTGCATGCATG 59.969 50.000 23.37 22.70 31.31 4.06
1732 2295 0.031585 GCCGATCATTGCATGCATGT 59.968 50.000 26.79 10.91 0.00 3.21
1743 2310 7.170277 TCATTGCATGCATGTTCCTATATACT 58.830 34.615 26.79 0.00 0.00 2.12
1744 2311 7.335171 TCATTGCATGCATGTTCCTATATACTC 59.665 37.037 26.79 6.83 0.00 2.59
1745 2312 5.491070 TGCATGCATGTTCCTATATACTCC 58.509 41.667 26.79 6.41 0.00 3.85
1746 2313 4.878397 GCATGCATGTTCCTATATACTCCC 59.122 45.833 26.79 1.51 0.00 4.30
1747 2314 5.338708 GCATGCATGTTCCTATATACTCCCT 60.339 44.000 26.79 0.00 0.00 4.20
1748 2315 6.344500 CATGCATGTTCCTATATACTCCCTC 58.656 44.000 18.91 0.00 0.00 4.30
1749 2316 4.777896 TGCATGTTCCTATATACTCCCTCC 59.222 45.833 0.00 0.00 0.00 4.30
1750 2317 4.142138 GCATGTTCCTATATACTCCCTCCG 60.142 50.000 0.00 0.00 0.00 4.63
1751 2318 4.736611 TGTTCCTATATACTCCCTCCGT 57.263 45.455 0.00 0.00 0.00 4.69
1752 2319 5.070823 TGTTCCTATATACTCCCTCCGTT 57.929 43.478 0.00 0.00 0.00 4.44
1753 2320 5.075493 TGTTCCTATATACTCCCTCCGTTC 58.925 45.833 0.00 0.00 0.00 3.95
1754 2321 4.313020 TCCTATATACTCCCTCCGTTCC 57.687 50.000 0.00 0.00 0.00 3.62
1755 2322 3.921486 TCCTATATACTCCCTCCGTTCCT 59.079 47.826 0.00 0.00 0.00 3.36
1756 2323 5.103687 TCCTATATACTCCCTCCGTTCCTA 58.896 45.833 0.00 0.00 0.00 2.94
1757 2324 5.553162 TCCTATATACTCCCTCCGTTCCTAA 59.447 44.000 0.00 0.00 0.00 2.69
1758 2325 6.045931 TCCTATATACTCCCTCCGTTCCTAAA 59.954 42.308 0.00 0.00 0.00 1.85
1759 2326 6.896307 CCTATATACTCCCTCCGTTCCTAAAT 59.104 42.308 0.00 0.00 0.00 1.40
1760 2327 8.057623 CCTATATACTCCCTCCGTTCCTAAATA 58.942 40.741 0.00 0.00 0.00 1.40
1761 2328 9.643735 CTATATACTCCCTCCGTTCCTAAATAT 57.356 37.037 0.00 0.00 0.00 1.28
1764 2331 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1765 2332 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1766 2333 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1767 2334 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1768 2335 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1769 2336 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1770 2337 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1771 2338 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1788 2355 8.410673 AGTCTTTGTAGAGATTTCACTGTAGA 57.589 34.615 0.00 0.00 0.00 2.59
1789 2356 8.301002 AGTCTTTGTAGAGATTTCACTGTAGAC 58.699 37.037 0.00 0.00 0.00 2.59
1790 2357 8.301002 GTCTTTGTAGAGATTTCACTGTAGACT 58.699 37.037 0.00 0.00 0.00 3.24
1791 2358 9.516546 TCTTTGTAGAGATTTCACTGTAGACTA 57.483 33.333 0.00 0.00 0.00 2.59
1798 2365 9.221933 AGAGATTTCACTGTAGACTATATACGG 57.778 37.037 0.00 0.00 35.92 4.02
1799 2366 9.217278 GAGATTTCACTGTAGACTATATACGGA 57.783 37.037 0.00 0.00 34.29 4.69
1800 2367 9.221933 AGATTTCACTGTAGACTATATACGGAG 57.778 37.037 0.00 0.00 34.29 4.63
1801 2368 6.798315 TTCACTGTAGACTATATACGGAGC 57.202 41.667 0.00 0.00 34.29 4.70
1802 2369 5.861727 TCACTGTAGACTATATACGGAGCA 58.138 41.667 0.00 0.00 34.29 4.26
1803 2370 6.293698 TCACTGTAGACTATATACGGAGCAA 58.706 40.000 0.00 0.00 34.29 3.91
1804 2371 6.769341 TCACTGTAGACTATATACGGAGCAAA 59.231 38.462 0.00 0.00 34.29 3.68
1805 2372 7.041303 TCACTGTAGACTATATACGGAGCAAAG 60.041 40.741 0.00 0.00 34.29 2.77
1806 2373 6.771749 ACTGTAGACTATATACGGAGCAAAGT 59.228 38.462 0.00 0.00 34.29 2.66
1807 2374 6.967135 TGTAGACTATATACGGAGCAAAGTG 58.033 40.000 0.00 0.00 0.00 3.16
1808 2375 6.769341 TGTAGACTATATACGGAGCAAAGTGA 59.231 38.462 0.00 0.00 0.00 3.41
1809 2376 6.320494 AGACTATATACGGAGCAAAGTGAG 57.680 41.667 0.00 0.00 0.00 3.51
1810 2377 5.828859 AGACTATATACGGAGCAAAGTGAGT 59.171 40.000 0.00 0.00 0.00 3.41
1811 2378 5.833082 ACTATATACGGAGCAAAGTGAGTG 58.167 41.667 0.00 0.00 0.00 3.51
1812 2379 5.593095 ACTATATACGGAGCAAAGTGAGTGA 59.407 40.000 0.00 0.00 0.00 3.41
1813 2380 3.678056 ATACGGAGCAAAGTGAGTGAA 57.322 42.857 0.00 0.00 0.00 3.18
1814 2381 2.550830 ACGGAGCAAAGTGAGTGAAT 57.449 45.000 0.00 0.00 0.00 2.57
1815 2382 2.417719 ACGGAGCAAAGTGAGTGAATC 58.582 47.619 0.00 0.00 0.00 2.52
1816 2383 2.037772 ACGGAGCAAAGTGAGTGAATCT 59.962 45.455 0.00 0.00 0.00 2.40
1817 2384 3.258372 ACGGAGCAAAGTGAGTGAATCTA 59.742 43.478 0.00 0.00 0.00 1.98
1818 2385 3.614616 CGGAGCAAAGTGAGTGAATCTAC 59.385 47.826 0.00 0.00 0.00 2.59
1819 2386 4.569943 GGAGCAAAGTGAGTGAATCTACA 58.430 43.478 0.00 0.00 0.00 2.74
1820 2387 4.390297 GGAGCAAAGTGAGTGAATCTACAC 59.610 45.833 0.00 0.00 40.60 2.90
1833 2400 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
1834 2401 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
1835 2402 9.534565 GTGAATCTACACTCTAAAATGCATCTA 57.465 33.333 0.00 0.00 37.73 1.98
1897 2464 8.959705 AAAGACTTATATTTAAGAACGGAGGG 57.040 34.615 9.58 0.00 38.56 4.30
1898 2465 7.909485 AGACTTATATTTAAGAACGGAGGGA 57.091 36.000 9.58 0.00 38.56 4.20
1899 2466 7.953752 AGACTTATATTTAAGAACGGAGGGAG 58.046 38.462 9.58 0.00 38.56 4.30
1986 2590 4.038642 GGCCGGCTATCCAATTTCATTTTA 59.961 41.667 28.56 0.00 0.00 1.52
2197 2915 9.944376 ATATATGGTGTTCATGGTACTATTCAC 57.056 33.333 0.00 9.09 37.30 3.18
2198 2916 5.755409 TGGTGTTCATGGTACTATTCACT 57.245 39.130 14.04 0.00 0.00 3.41
2199 2917 6.860790 TGGTGTTCATGGTACTATTCACTA 57.139 37.500 14.04 8.72 0.00 2.74
2200 2918 6.636705 TGGTGTTCATGGTACTATTCACTAC 58.363 40.000 14.04 5.78 0.00 2.73
2201 2919 6.047231 GGTGTTCATGGTACTATTCACTACC 58.953 44.000 14.04 9.29 34.08 3.18
2202 2920 5.747197 GTGTTCATGGTACTATTCACTACCG 59.253 44.000 0.00 0.00 35.99 4.02
2203 2921 5.163488 TGTTCATGGTACTATTCACTACCGG 60.163 44.000 0.00 0.00 35.99 5.28
2204 2922 4.795469 TCATGGTACTATTCACTACCGGA 58.205 43.478 9.46 0.00 35.99 5.14
2205 2923 5.202765 TCATGGTACTATTCACTACCGGAA 58.797 41.667 9.46 0.00 35.99 4.30
2206 2924 4.989279 TGGTACTATTCACTACCGGAAC 57.011 45.455 9.46 0.00 35.99 3.62
2207 2925 4.343231 TGGTACTATTCACTACCGGAACA 58.657 43.478 9.46 0.00 35.99 3.18
2208 2926 4.400251 TGGTACTATTCACTACCGGAACAG 59.600 45.833 9.46 4.49 35.99 3.16
2209 2927 4.202090 GGTACTATTCACTACCGGAACAGG 60.202 50.000 9.46 0.00 37.30 4.00
2210 2928 2.764572 ACTATTCACTACCGGAACAGGG 59.235 50.000 9.46 2.97 35.02 4.45
2211 2929 0.252197 ATTCACTACCGGAACAGGGC 59.748 55.000 9.46 0.00 35.02 5.19
2212 2930 1.833787 TTCACTACCGGAACAGGGCC 61.834 60.000 9.46 0.00 35.02 5.80
2213 2931 3.007323 ACTACCGGAACAGGGCCC 61.007 66.667 16.46 16.46 35.02 5.80
2214 2932 2.687566 CTACCGGAACAGGGCCCT 60.688 66.667 22.28 22.28 35.02 5.19
2215 2933 1.382146 CTACCGGAACAGGGCCCTA 60.382 63.158 28.13 4.94 35.02 3.53
2216 2934 0.763223 CTACCGGAACAGGGCCCTAT 60.763 60.000 28.13 12.06 35.02 2.57
2217 2935 1.052124 TACCGGAACAGGGCCCTATG 61.052 60.000 28.13 17.80 35.02 2.23
2218 2936 2.203209 CGGAACAGGGCCCTATGC 60.203 66.667 28.13 20.74 40.16 3.14
2219 2937 2.746375 CGGAACAGGGCCCTATGCT 61.746 63.158 28.13 5.00 40.92 3.79
2220 2938 1.152881 GGAACAGGGCCCTATGCTG 60.153 63.158 28.13 16.05 40.92 4.41
2221 2939 1.635817 GGAACAGGGCCCTATGCTGA 61.636 60.000 28.13 0.00 40.92 4.26
2222 2940 0.464554 GAACAGGGCCCTATGCTGAC 60.465 60.000 28.13 8.23 40.92 3.51
2223 2941 2.109799 CAGGGCCCTATGCTGACG 59.890 66.667 28.13 5.33 40.92 4.35
2224 2942 3.164269 AGGGCCCTATGCTGACGG 61.164 66.667 27.42 0.00 40.92 4.79
2225 2943 4.937431 GGGCCCTATGCTGACGGC 62.937 72.222 17.04 0.00 40.92 5.68
2227 2945 4.175337 GCCCTATGCTGACGGCCA 62.175 66.667 2.24 0.00 40.92 5.36
2228 2946 2.831770 CCCTATGCTGACGGCCAT 59.168 61.111 2.24 0.00 40.92 4.40
2229 2947 2.057830 CCCTATGCTGACGGCCATA 58.942 57.895 2.24 1.53 40.92 2.74
2230 2948 0.615331 CCCTATGCTGACGGCCATAT 59.385 55.000 2.24 0.00 40.92 1.78
2231 2949 1.406069 CCCTATGCTGACGGCCATATC 60.406 57.143 2.24 0.00 40.92 1.63
2232 2950 1.552337 CCTATGCTGACGGCCATATCT 59.448 52.381 2.24 0.00 40.92 1.98
2233 2951 2.760650 CCTATGCTGACGGCCATATCTA 59.239 50.000 2.24 0.00 40.92 1.98
2234 2952 3.386078 CCTATGCTGACGGCCATATCTAT 59.614 47.826 2.24 0.00 40.92 1.98
2235 2953 2.749280 TGCTGACGGCCATATCTATG 57.251 50.000 2.24 0.00 40.92 2.23
2236 2954 1.338105 TGCTGACGGCCATATCTATGC 60.338 52.381 2.24 4.53 40.92 3.14
2237 2955 2.009042 GCTGACGGCCATATCTATGCC 61.009 57.143 2.24 0.00 34.27 4.40
2239 2957 0.530744 GACGGCCATATCTATGCCGA 59.469 55.000 26.60 0.00 46.45 5.54
2240 2958 0.246635 ACGGCCATATCTATGCCGAC 59.753 55.000 26.60 5.20 46.45 4.79
2241 2959 0.802222 CGGCCATATCTATGCCGACG 60.802 60.000 16.48 7.08 46.45 5.12
2242 2960 0.460284 GGCCATATCTATGCCGACGG 60.460 60.000 10.29 10.29 32.40 4.79
2261 2979 4.760047 CCCCGTCGGCCTTGTCTG 62.760 72.222 5.50 0.00 0.00 3.51
2262 2980 4.760047 CCCGTCGGCCTTGTCTGG 62.760 72.222 5.50 0.00 0.00 3.86
2263 2981 4.760047 CCGTCGGCCTTGTCTGGG 62.760 72.222 0.00 0.00 0.00 4.45
2269 2987 3.833304 GCCTTGTCTGGGCTATGC 58.167 61.111 0.00 0.00 45.57 3.14
2281 2999 3.540211 GCTATGCCGACAGCCATAT 57.460 52.632 0.00 0.00 42.71 1.78
2282 3000 1.363744 GCTATGCCGACAGCCATATC 58.636 55.000 0.00 0.00 42.71 1.63
2283 3001 2.009042 GCTATGCCGACAGCCATATCC 61.009 57.143 0.00 0.00 42.71 2.59
2284 3002 1.276138 CTATGCCGACAGCCATATCCA 59.724 52.381 0.00 0.00 42.71 3.41
2285 3003 0.035881 ATGCCGACAGCCATATCCAG 59.964 55.000 0.00 0.00 42.71 3.86
2286 3004 1.302033 GCCGACAGCCATATCCAGG 60.302 63.158 0.00 0.00 34.35 4.45
2292 3010 2.357517 GCCATATCCAGGCCGTCG 60.358 66.667 0.00 0.00 46.50 5.12
2293 3011 2.343758 CCATATCCAGGCCGTCGG 59.656 66.667 6.99 6.99 0.00 4.79
2304 3022 1.274770 GCCGTCGGCGTAATAAAGC 59.725 57.895 22.50 0.00 39.62 3.51
2310 3028 1.929376 GGCGTAATAAAGCCGTCGG 59.071 57.895 6.99 6.99 44.22 4.79
2311 3029 1.493134 GGCGTAATAAAGCCGTCGGG 61.493 60.000 14.38 0.00 44.22 5.14
2321 3039 3.043419 CCGTCGGGCTATCCAGAG 58.957 66.667 2.34 0.00 37.24 3.35
2322 3040 1.528542 CCGTCGGGCTATCCAGAGA 60.529 63.158 2.34 0.00 37.24 3.10
2323 3041 0.896019 CCGTCGGGCTATCCAGAGAT 60.896 60.000 2.34 0.00 37.24 2.75
2324 3042 1.613520 CCGTCGGGCTATCCAGAGATA 60.614 57.143 2.34 0.00 37.24 1.98
2325 3043 2.370349 CGTCGGGCTATCCAGAGATAT 58.630 52.381 0.00 0.00 37.24 1.63
2326 3044 2.098280 CGTCGGGCTATCCAGAGATATG 59.902 54.545 0.00 0.00 37.24 1.78
2327 3045 2.103373 TCGGGCTATCCAGAGATATGC 58.897 52.381 0.00 0.00 34.44 3.14
2328 3046 1.137872 CGGGCTATCCAGAGATATGCC 59.862 57.143 11.77 11.77 42.52 4.40
2329 3047 1.137872 GGGCTATCCAGAGATATGCCG 59.862 57.143 12.94 0.00 43.28 5.69
2330 3048 2.103373 GGCTATCCAGAGATATGCCGA 58.897 52.381 0.00 0.00 38.42 5.54
2331 3049 2.159170 GGCTATCCAGAGATATGCCGAC 60.159 54.545 0.00 0.00 38.42 4.79
2332 3050 2.478709 GCTATCCAGAGATATGCCGACG 60.479 54.545 0.00 0.00 34.44 5.12
2333 3051 0.891373 ATCCAGAGATATGCCGACGG 59.109 55.000 10.29 10.29 0.00 4.79
2334 3052 3.779975 TATCCAGAGATATGCCGACGGC 61.780 54.545 31.85 31.85 40.59 5.68
2370 3088 4.397832 GCCGTCGGCTTACCCCAA 62.398 66.667 28.98 0.00 46.69 4.12
2371 3089 2.125269 CCGTCGGCTTACCCCAAG 60.125 66.667 0.00 0.00 37.31 3.61
2372 3090 2.660802 CGTCGGCTTACCCCAAGT 59.339 61.111 0.00 0.00 36.55 3.16
2373 3091 1.004200 CGTCGGCTTACCCCAAGTT 60.004 57.895 0.00 0.00 36.55 2.66
2374 3092 0.247185 CGTCGGCTTACCCCAAGTTA 59.753 55.000 0.00 0.00 36.55 2.24
2375 3093 1.730501 GTCGGCTTACCCCAAGTTAC 58.269 55.000 0.00 0.00 36.55 2.50
2376 3094 0.247185 TCGGCTTACCCCAAGTTACG 59.753 55.000 0.00 0.00 36.55 3.18
2377 3095 1.363885 CGGCTTACCCCAAGTTACGC 61.364 60.000 0.00 0.00 36.55 4.42
2378 3096 1.028330 GGCTTACCCCAAGTTACGCC 61.028 60.000 0.00 0.00 36.55 5.68
2379 3097 0.035725 GCTTACCCCAAGTTACGCCT 60.036 55.000 0.00 0.00 36.55 5.52
2380 3098 1.207811 GCTTACCCCAAGTTACGCCTA 59.792 52.381 0.00 0.00 36.55 3.93
2381 3099 2.897436 CTTACCCCAAGTTACGCCTAC 58.103 52.381 0.00 0.00 0.00 3.18
2382 3100 1.935799 TACCCCAAGTTACGCCTACA 58.064 50.000 0.00 0.00 0.00 2.74
2383 3101 0.611714 ACCCCAAGTTACGCCTACAG 59.388 55.000 0.00 0.00 0.00 2.74
2384 3102 0.743345 CCCCAAGTTACGCCTACAGC 60.743 60.000 0.00 0.00 38.52 4.40
2404 3122 2.972505 CCGTCGGCATACATGGGC 60.973 66.667 0.00 0.00 0.00 5.36
2405 3123 2.972505 CGTCGGCATACATGGGCC 60.973 66.667 13.51 13.51 46.80 5.80
2409 3127 2.972505 GGCATACATGGGCCGTCG 60.973 66.667 9.17 0.00 40.93 5.12
2410 3128 2.972505 GCATACATGGGCCGTCGG 60.973 66.667 6.99 6.99 0.00 4.79
2445 3163 4.498520 CGATCCCGCTCGTGCTGT 62.499 66.667 7.97 0.00 36.97 4.40
2446 3164 2.887568 GATCCCGCTCGTGCTGTG 60.888 66.667 7.97 0.00 36.97 3.66
2453 3171 2.432456 CTCGTGCTGTGCGGCTAA 60.432 61.111 0.00 0.00 0.00 3.09
2454 3172 2.730672 CTCGTGCTGTGCGGCTAAC 61.731 63.158 0.00 0.00 0.00 2.34
2456 3174 3.788766 GTGCTGTGCGGCTAACGG 61.789 66.667 0.00 0.00 44.51 4.44
2472 3190 2.430921 GGCGTCCGATCTATGCCG 60.431 66.667 11.19 0.00 39.14 5.69
2473 3191 2.643272 GCGTCCGATCTATGCCGA 59.357 61.111 0.00 0.00 0.00 5.54
2474 3192 1.729838 GCGTCCGATCTATGCCGAC 60.730 63.158 0.00 0.00 0.00 4.79
2475 3193 1.440518 CGTCCGATCTATGCCGACG 60.441 63.158 0.00 0.00 0.00 5.12
2476 3194 1.081376 GTCCGATCTATGCCGACGG 60.081 63.158 10.29 10.29 44.09 4.79
2516 3234 2.910688 CATAGATGCCCTTACCACGT 57.089 50.000 0.00 0.00 0.00 4.49
2517 3235 2.755650 CATAGATGCCCTTACCACGTC 58.244 52.381 0.00 0.00 0.00 4.34
2518 3236 1.855295 TAGATGCCCTTACCACGTCA 58.145 50.000 0.00 0.00 0.00 4.35
2519 3237 1.204146 AGATGCCCTTACCACGTCAT 58.796 50.000 0.00 0.00 0.00 3.06
2520 3238 1.139058 AGATGCCCTTACCACGTCATC 59.861 52.381 2.35 2.35 0.00 2.92
2521 3239 0.179084 ATGCCCTTACCACGTCATCG 60.179 55.000 0.00 0.00 43.34 3.84
2522 3240 1.252215 TGCCCTTACCACGTCATCGA 61.252 55.000 0.00 0.00 40.62 3.59
2523 3241 0.104304 GCCCTTACCACGTCATCGAT 59.896 55.000 0.00 0.00 40.62 3.59
2524 3242 1.868519 GCCCTTACCACGTCATCGATC 60.869 57.143 0.00 0.00 40.62 3.69
2525 3243 1.269621 CCCTTACCACGTCATCGATCC 60.270 57.143 0.00 0.00 40.62 3.36
2526 3244 1.599667 CCTTACCACGTCATCGATCCG 60.600 57.143 11.37 11.37 40.62 4.18
2527 3245 1.332686 CTTACCACGTCATCGATCCGA 59.667 52.381 18.03 1.41 41.13 4.55
2528 3246 0.942252 TACCACGTCATCGATCCGAG 59.058 55.000 18.03 11.37 39.91 4.63
2529 3247 1.008424 CCACGTCATCGATCCGAGG 60.008 63.158 18.03 15.65 39.91 4.63
2530 3248 1.658717 CACGTCATCGATCCGAGGC 60.659 63.158 18.03 0.00 39.91 4.70
2531 3249 2.427575 CGTCATCGATCCGAGGCG 60.428 66.667 8.00 0.83 39.91 5.52
2532 3250 2.731348 GTCATCGATCCGAGGCGC 60.731 66.667 0.00 0.00 39.91 6.53
2533 3251 3.216292 TCATCGATCCGAGGCGCA 61.216 61.111 10.83 0.00 39.91 6.09
2534 3252 3.032609 CATCGATCCGAGGCGCAC 61.033 66.667 10.83 0.96 39.91 5.34
2535 3253 4.286320 ATCGATCCGAGGCGCACC 62.286 66.667 10.83 0.00 39.91 5.01
2547 3265 3.687102 CGCACCGACCACCACCTA 61.687 66.667 0.00 0.00 0.00 3.08
2548 3266 2.987125 GCACCGACCACCACCTAT 59.013 61.111 0.00 0.00 0.00 2.57
2549 3267 1.449601 GCACCGACCACCACCTATG 60.450 63.158 0.00 0.00 0.00 2.23
2550 3268 1.449601 CACCGACCACCACCTATGC 60.450 63.158 0.00 0.00 0.00 3.14
2551 3269 2.189521 CCGACCACCACCTATGCC 59.810 66.667 0.00 0.00 0.00 4.40
2552 3270 2.202878 CGACCACCACCTATGCCG 60.203 66.667 0.00 0.00 0.00 5.69
2553 3271 2.717044 CGACCACCACCTATGCCGA 61.717 63.158 0.00 0.00 0.00 5.54
2554 3272 1.153429 GACCACCACCTATGCCGAC 60.153 63.158 0.00 0.00 0.00 4.79
2555 3273 2.202878 CCACCACCTATGCCGACG 60.203 66.667 0.00 0.00 0.00 5.12
2556 3274 2.202878 CACCACCTATGCCGACGG 60.203 66.667 10.29 10.29 0.00 4.79
2589 3307 2.634815 AGATGCCACATCACTGATCC 57.365 50.000 10.02 0.00 0.00 3.36
2590 3308 1.202615 AGATGCCACATCACTGATCCG 60.203 52.381 10.02 0.00 0.00 4.18
2591 3309 0.816825 ATGCCACATCACTGATCCGC 60.817 55.000 0.00 0.00 0.00 5.54
2592 3310 2.528743 GCCACATCACTGATCCGCG 61.529 63.158 0.00 0.00 0.00 6.46
2593 3311 1.884464 CCACATCACTGATCCGCGG 60.884 63.158 22.12 22.12 0.00 6.46
2594 3312 2.202932 ACATCACTGATCCGCGGC 60.203 61.111 23.51 8.29 0.00 6.53
2595 3313 3.333189 CATCACTGATCCGCGGCG 61.333 66.667 23.51 16.78 0.00 6.46
2613 3331 2.190313 CGCCAGCAATCTGCCCTA 59.810 61.111 0.00 0.00 46.52 3.53
2614 3332 1.228063 CGCCAGCAATCTGCCCTAT 60.228 57.895 0.00 0.00 46.52 2.57
2615 3333 1.512996 CGCCAGCAATCTGCCCTATG 61.513 60.000 0.00 0.00 46.52 2.23
2616 3334 1.803366 GCCAGCAATCTGCCCTATGC 61.803 60.000 0.00 0.00 46.52 3.14
2617 3335 1.177256 CCAGCAATCTGCCCTATGCC 61.177 60.000 0.00 0.00 46.52 4.40
2618 3336 1.228063 AGCAATCTGCCCTATGCCG 60.228 57.895 0.00 0.00 46.52 5.69
2619 3337 2.912624 GCAATCTGCCCTATGCCGC 61.913 63.158 0.00 0.00 37.42 6.53
2620 3338 1.526686 CAATCTGCCCTATGCCGCA 60.527 57.895 0.00 0.00 40.16 5.69
2623 3341 4.559063 CTGCCCTATGCCGCAGCT 62.559 66.667 0.00 0.00 45.39 4.24
2624 3342 3.160748 TGCCCTATGCCGCAGCTA 61.161 61.111 0.00 0.00 40.80 3.32
2625 3343 2.348998 GCCCTATGCCGCAGCTAT 59.651 61.111 0.00 0.00 40.80 2.97
2626 3344 2.037136 GCCCTATGCCGCAGCTATG 61.037 63.158 0.00 0.00 40.80 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.412386 ACGTCAGCAAATAGAAAAGCCT 58.588 40.909 0.00 0.00 0.00 4.58
88 89 7.686438 AGAATATGTAACACAATGAGCACAA 57.314 32.000 0.00 0.00 0.00 3.33
116 117 9.712305 GCTCAAAATGGAGTAGCTATAGAATAA 57.288 33.333 3.21 0.00 37.24 1.40
229 233 2.672961 TCCGTGAACATGTCTGATCC 57.327 50.000 0.00 0.00 0.00 3.36
259 265 1.077429 GGCCGGCCTTCTCAAATCT 60.077 57.895 38.76 0.00 0.00 2.40
295 301 1.813753 TTTAGCGCGAGTGCCCATC 60.814 57.895 12.10 0.00 38.08 3.51
518 547 2.533266 TCGTTGCTTCTGCTTCTTCT 57.467 45.000 0.00 0.00 40.48 2.85
530 567 2.557805 CTGCATGCGTTCGTTGCT 59.442 55.556 14.09 0.00 37.28 3.91
553 593 5.277345 GCAATTCGGTGCGGATATATATTCC 60.277 44.000 0.00 0.00 34.21 3.01
593 639 1.300233 GGCATCTCGATCGGGTGAC 60.300 63.158 15.95 11.14 0.00 3.67
638 713 1.970092 AGCTAGCTAGAACCGTCGAT 58.030 50.000 25.15 0.00 0.00 3.59
800 1072 2.285773 ATGCCGCTGACAGGTGAGA 61.286 57.895 4.26 0.00 0.00 3.27
980 1253 1.065764 CAGAGTATAGCCGCGTGCA 59.934 57.895 19.30 7.89 44.83 4.57
1082 1423 1.372582 TGCAGCCGAATCACAATCTC 58.627 50.000 0.00 0.00 0.00 2.75
1085 1426 3.884693 TGATTATGCAGCCGAATCACAAT 59.115 39.130 12.82 0.00 35.26 2.71
1264 1615 2.279580 CGCGCAGTCATAGTCGTCG 61.280 63.158 8.75 0.00 0.00 5.12
1373 1832 3.380637 CCGGACGGAGGGAGTATATATTG 59.619 52.174 4.40 0.00 37.50 1.90
1386 1845 1.080025 GACAAGTTCCCGGACGGAG 60.080 63.158 13.13 2.58 43.39 4.63
1387 1846 1.189524 ATGACAAGTTCCCGGACGGA 61.190 55.000 13.13 0.00 39.68 4.69
1388 1847 0.739813 GATGACAAGTTCCCGGACGG 60.740 60.000 0.73 3.25 0.00 4.79
1389 1848 0.037697 TGATGACAAGTTCCCGGACG 60.038 55.000 0.73 0.00 0.00 4.79
1390 1849 2.178912 TTGATGACAAGTTCCCGGAC 57.821 50.000 0.73 0.00 0.00 4.79
1391 1850 2.940994 TTTGATGACAAGTTCCCGGA 57.059 45.000 0.73 0.00 37.32 5.14
1392 1851 4.022416 TCATTTTTGATGACAAGTTCCCGG 60.022 41.667 0.00 0.00 37.32 5.73
1393 1852 5.119931 TCATTTTTGATGACAAGTTCCCG 57.880 39.130 0.00 0.00 37.32 5.14
1394 1853 8.522830 TCTATTCATTTTTGATGACAAGTTCCC 58.477 33.333 0.00 0.00 37.32 3.97
1395 1854 9.912634 TTCTATTCATTTTTGATGACAAGTTCC 57.087 29.630 0.00 0.00 37.32 3.62
1397 1856 9.918630 CCTTCTATTCATTTTTGATGACAAGTT 57.081 29.630 0.00 0.00 37.32 2.66
1398 1857 9.300681 TCCTTCTATTCATTTTTGATGACAAGT 57.699 29.630 0.00 0.00 37.32 3.16
1399 1858 9.784680 CTCCTTCTATTCATTTTTGATGACAAG 57.215 33.333 0.00 0.00 37.32 3.16
1400 1859 9.519191 TCTCCTTCTATTCATTTTTGATGACAA 57.481 29.630 0.00 0.00 0.00 3.18
1401 1860 9.690913 ATCTCCTTCTATTCATTTTTGATGACA 57.309 29.630 0.00 0.00 0.00 3.58
1402 1861 9.947669 CATCTCCTTCTATTCATTTTTGATGAC 57.052 33.333 0.00 0.00 31.18 3.06
1403 1862 9.690913 ACATCTCCTTCTATTCATTTTTGATGA 57.309 29.630 0.00 0.00 33.11 2.92
1455 1914 8.814931 TGTCATCAAAATGGATAAAAAGGATGT 58.185 29.630 0.00 0.00 33.29 3.06
1456 1915 9.656040 TTGTCATCAAAATGGATAAAAAGGATG 57.344 29.630 0.00 0.00 33.42 3.51
1457 1916 9.880157 CTTGTCATCAAAATGGATAAAAAGGAT 57.120 29.630 0.00 0.00 33.42 3.24
1458 1917 8.869109 ACTTGTCATCAAAATGGATAAAAAGGA 58.131 29.630 0.00 0.00 33.42 3.36
1466 1925 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
1467 1926 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
1468 1927 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
1469 1928 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1470 1929 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1471 1930 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1472 1931 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1473 1932 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1474 1933 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1475 1934 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1476 1935 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1477 1936 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1478 1937 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1479 1938 2.301009 ACCTCCGTCCGAAAATACTTGT 59.699 45.455 0.00 0.00 0.00 3.16
1480 1939 2.968675 ACCTCCGTCCGAAAATACTTG 58.031 47.619 0.00 0.00 0.00 3.16
1481 1940 3.766051 ACTACCTCCGTCCGAAAATACTT 59.234 43.478 0.00 0.00 0.00 2.24
1482 1941 3.359950 ACTACCTCCGTCCGAAAATACT 58.640 45.455 0.00 0.00 0.00 2.12
1483 1942 3.790152 ACTACCTCCGTCCGAAAATAC 57.210 47.619 0.00 0.00 0.00 1.89
1484 1943 5.132502 TCATACTACCTCCGTCCGAAAATA 58.867 41.667 0.00 0.00 0.00 1.40
1485 1944 3.956199 TCATACTACCTCCGTCCGAAAAT 59.044 43.478 0.00 0.00 0.00 1.82
1486 1945 3.355378 TCATACTACCTCCGTCCGAAAA 58.645 45.455 0.00 0.00 0.00 2.29
1487 1946 2.947652 CTCATACTACCTCCGTCCGAAA 59.052 50.000 0.00 0.00 0.00 3.46
1488 1947 2.171237 TCTCATACTACCTCCGTCCGAA 59.829 50.000 0.00 0.00 0.00 4.30
1489 1948 1.764723 TCTCATACTACCTCCGTCCGA 59.235 52.381 0.00 0.00 0.00 4.55
1490 1949 1.872313 GTCTCATACTACCTCCGTCCG 59.128 57.143 0.00 0.00 0.00 4.79
1491 1950 2.879646 CTGTCTCATACTACCTCCGTCC 59.120 54.545 0.00 0.00 0.00 4.79
1492 1951 3.312973 CACTGTCTCATACTACCTCCGTC 59.687 52.174 0.00 0.00 0.00 4.79
1493 1952 3.054582 TCACTGTCTCATACTACCTCCGT 60.055 47.826 0.00 0.00 0.00 4.69
1494 1953 3.542648 TCACTGTCTCATACTACCTCCG 58.457 50.000 0.00 0.00 0.00 4.63
1495 1954 4.521256 GGATCACTGTCTCATACTACCTCC 59.479 50.000 0.00 0.00 0.00 4.30
1496 1955 5.133941 TGGATCACTGTCTCATACTACCTC 58.866 45.833 0.00 0.00 0.00 3.85
1497 1956 5.130705 TGGATCACTGTCTCATACTACCT 57.869 43.478 0.00 0.00 0.00 3.08
1498 1957 4.279671 CCTGGATCACTGTCTCATACTACC 59.720 50.000 0.00 0.00 0.00 3.18
1499 1958 4.890581 ACCTGGATCACTGTCTCATACTAC 59.109 45.833 0.00 0.00 0.00 2.73
1500 1959 4.889995 CACCTGGATCACTGTCTCATACTA 59.110 45.833 0.00 0.00 0.00 1.82
1501 1960 3.703556 CACCTGGATCACTGTCTCATACT 59.296 47.826 0.00 0.00 0.00 2.12
1502 1961 3.449018 ACACCTGGATCACTGTCTCATAC 59.551 47.826 0.00 0.00 0.00 2.39
1503 1962 3.448660 CACACCTGGATCACTGTCTCATA 59.551 47.826 0.00 0.00 0.00 2.15
1504 1963 2.235650 CACACCTGGATCACTGTCTCAT 59.764 50.000 0.00 0.00 0.00 2.90
1505 1964 1.620323 CACACCTGGATCACTGTCTCA 59.380 52.381 0.00 0.00 0.00 3.27
1506 1965 1.674221 GCACACCTGGATCACTGTCTC 60.674 57.143 0.00 0.00 0.00 3.36
1507 1966 0.322975 GCACACCTGGATCACTGTCT 59.677 55.000 0.00 0.00 0.00 3.41
1508 1967 0.322975 AGCACACCTGGATCACTGTC 59.677 55.000 0.00 0.00 0.00 3.51
1509 1968 0.767375 AAGCACACCTGGATCACTGT 59.233 50.000 0.00 0.00 0.00 3.55
1510 1969 1.901591 AAAGCACACCTGGATCACTG 58.098 50.000 0.00 0.00 0.00 3.66
1511 1970 2.624838 CAAAAAGCACACCTGGATCACT 59.375 45.455 0.00 0.00 0.00 3.41
1512 1971 2.863704 GCAAAAAGCACACCTGGATCAC 60.864 50.000 0.00 0.00 44.79 3.06
1513 1972 1.340889 GCAAAAAGCACACCTGGATCA 59.659 47.619 0.00 0.00 44.79 2.92
1592 2122 7.437793 AGCCTACTTTCAGTATCTATACGAC 57.562 40.000 0.00 0.00 38.28 4.34
1619 2153 3.424962 GCAGTAACAGTCGATGAAAAGCC 60.425 47.826 0.00 0.00 0.00 4.35
1694 2257 0.441533 CAGATCGAGCAACAGCACAC 59.558 55.000 2.38 0.00 0.00 3.82
1729 2292 5.272405 ACGGAGGGAGTATATAGGAACAT 57.728 43.478 0.00 0.00 0.00 2.71
1730 2293 4.736611 ACGGAGGGAGTATATAGGAACA 57.263 45.455 0.00 0.00 0.00 3.18
1731 2294 4.462132 GGAACGGAGGGAGTATATAGGAAC 59.538 50.000 0.00 0.00 0.00 3.62
1732 2295 4.356190 AGGAACGGAGGGAGTATATAGGAA 59.644 45.833 0.00 0.00 0.00 3.36
1743 2310 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1744 2311 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1745 2312 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
1746 2313 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
1762 2329 8.861086 TCTACAGTGAAATCTCTACAAAGACTT 58.139 33.333 0.00 0.00 0.00 3.01
1763 2330 8.301002 GTCTACAGTGAAATCTCTACAAAGACT 58.699 37.037 0.00 0.00 0.00 3.24
1764 2331 8.301002 AGTCTACAGTGAAATCTCTACAAAGAC 58.699 37.037 0.00 0.00 0.00 3.01
1765 2332 8.410673 AGTCTACAGTGAAATCTCTACAAAGA 57.589 34.615 0.00 0.00 0.00 2.52
1772 2339 9.221933 CCGTATATAGTCTACAGTGAAATCTCT 57.778 37.037 0.00 0.00 0.00 3.10
1773 2340 9.217278 TCCGTATATAGTCTACAGTGAAATCTC 57.783 37.037 0.00 0.00 0.00 2.75
1774 2341 9.221933 CTCCGTATATAGTCTACAGTGAAATCT 57.778 37.037 0.00 0.00 0.00 2.40
1775 2342 7.964011 GCTCCGTATATAGTCTACAGTGAAATC 59.036 40.741 0.00 0.00 0.00 2.17
1776 2343 7.447545 TGCTCCGTATATAGTCTACAGTGAAAT 59.552 37.037 0.00 0.00 0.00 2.17
1777 2344 6.769341 TGCTCCGTATATAGTCTACAGTGAAA 59.231 38.462 0.00 0.00 0.00 2.69
1778 2345 6.293698 TGCTCCGTATATAGTCTACAGTGAA 58.706 40.000 0.00 0.00 0.00 3.18
1779 2346 5.861727 TGCTCCGTATATAGTCTACAGTGA 58.138 41.667 0.00 0.00 0.00 3.41
1780 2347 6.555812 TTGCTCCGTATATAGTCTACAGTG 57.444 41.667 0.00 0.00 0.00 3.66
1781 2348 6.771749 ACTTTGCTCCGTATATAGTCTACAGT 59.228 38.462 0.00 0.00 0.00 3.55
1782 2349 7.041303 TCACTTTGCTCCGTATATAGTCTACAG 60.041 40.741 0.00 0.00 0.00 2.74
1783 2350 6.769341 TCACTTTGCTCCGTATATAGTCTACA 59.231 38.462 0.00 0.00 0.00 2.74
1784 2351 7.041235 ACTCACTTTGCTCCGTATATAGTCTAC 60.041 40.741 0.00 0.00 0.00 2.59
1785 2352 6.996879 ACTCACTTTGCTCCGTATATAGTCTA 59.003 38.462 0.00 0.00 0.00 2.59
1786 2353 5.828859 ACTCACTTTGCTCCGTATATAGTCT 59.171 40.000 0.00 0.00 0.00 3.24
1787 2354 5.915758 CACTCACTTTGCTCCGTATATAGTC 59.084 44.000 0.00 0.00 0.00 2.59
1788 2355 5.593095 TCACTCACTTTGCTCCGTATATAGT 59.407 40.000 0.00 0.00 0.00 2.12
1789 2356 6.073327 TCACTCACTTTGCTCCGTATATAG 57.927 41.667 0.00 0.00 0.00 1.31
1790 2357 6.459670 TTCACTCACTTTGCTCCGTATATA 57.540 37.500 0.00 0.00 0.00 0.86
1791 2358 5.339008 TTCACTCACTTTGCTCCGTATAT 57.661 39.130 0.00 0.00 0.00 0.86
1792 2359 4.794278 TTCACTCACTTTGCTCCGTATA 57.206 40.909 0.00 0.00 0.00 1.47
1793 2360 3.678056 TTCACTCACTTTGCTCCGTAT 57.322 42.857 0.00 0.00 0.00 3.06
1794 2361 3.258372 AGATTCACTCACTTTGCTCCGTA 59.742 43.478 0.00 0.00 0.00 4.02
1795 2362 2.037772 AGATTCACTCACTTTGCTCCGT 59.962 45.455 0.00 0.00 0.00 4.69
1796 2363 2.693069 AGATTCACTCACTTTGCTCCG 58.307 47.619 0.00 0.00 0.00 4.63
1797 2364 4.390297 GTGTAGATTCACTCACTTTGCTCC 59.610 45.833 0.00 0.00 35.68 4.70
1798 2365 5.233988 AGTGTAGATTCACTCACTTTGCTC 58.766 41.667 0.00 0.00 44.07 4.26
1799 2366 5.220710 AGTGTAGATTCACTCACTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
1809 2376 8.430801 AGATGCATTTTAGAGTGTAGATTCAC 57.569 34.615 0.00 0.00 38.46 3.18
1851 2418 9.694137 GTCTTTATAGCGATTCCACTATAAACT 57.306 33.333 15.75 0.00 42.31 2.66
1852 2419 9.694137 AGTCTTTATAGCGATTCCACTATAAAC 57.306 33.333 15.75 11.38 42.31 2.01
1872 2439 8.765517 TCCCTCCGTTCTTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 39.65 2.52
1873 2440 8.315220 TCCCTCCGTTCTTAAATATAAGTCTT 57.685 34.615 0.00 0.00 39.65 3.01
1874 2441 7.564292 ACTCCCTCCGTTCTTAAATATAAGTCT 59.436 37.037 0.00 0.00 39.65 3.24
1875 2442 7.724287 ACTCCCTCCGTTCTTAAATATAAGTC 58.276 38.462 0.00 0.00 39.65 3.01
1876 2443 7.672122 ACTCCCTCCGTTCTTAAATATAAGT 57.328 36.000 0.00 0.00 39.65 2.24
1877 2444 9.640963 CATACTCCCTCCGTTCTTAAATATAAG 57.359 37.037 0.00 0.00 39.97 1.73
1878 2445 9.151177 ACATACTCCCTCCGTTCTTAAATATAA 57.849 33.333 0.00 0.00 0.00 0.98
1879 2446 8.716674 ACATACTCCCTCCGTTCTTAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
1880 2447 7.613551 ACATACTCCCTCCGTTCTTAAATAT 57.386 36.000 0.00 0.00 0.00 1.28
1881 2448 7.270047 CAACATACTCCCTCCGTTCTTAAATA 58.730 38.462 0.00 0.00 0.00 1.40
1882 2449 5.952347 ACATACTCCCTCCGTTCTTAAAT 57.048 39.130 0.00 0.00 0.00 1.40
1883 2450 5.484715 CAACATACTCCCTCCGTTCTTAAA 58.515 41.667 0.00 0.00 0.00 1.52
1884 2451 4.081309 CCAACATACTCCCTCCGTTCTTAA 60.081 45.833 0.00 0.00 0.00 1.85
1885 2452 3.449737 CCAACATACTCCCTCCGTTCTTA 59.550 47.826 0.00 0.00 0.00 2.10
1886 2453 2.236395 CCAACATACTCCCTCCGTTCTT 59.764 50.000 0.00 0.00 0.00 2.52
1887 2454 1.831736 CCAACATACTCCCTCCGTTCT 59.168 52.381 0.00 0.00 0.00 3.01
1888 2455 1.742750 GCCAACATACTCCCTCCGTTC 60.743 57.143 0.00 0.00 0.00 3.95
1889 2456 0.252197 GCCAACATACTCCCTCCGTT 59.748 55.000 0.00 0.00 0.00 4.44
1890 2457 0.907704 TGCCAACATACTCCCTCCGT 60.908 55.000 0.00 0.00 0.00 4.69
1891 2458 0.469917 ATGCCAACATACTCCCTCCG 59.530 55.000 0.00 0.00 33.67 4.63
1892 2459 3.857157 TTATGCCAACATACTCCCTCC 57.143 47.619 0.00 0.00 38.50 4.30
1893 2460 4.781934 AGTTTATGCCAACATACTCCCTC 58.218 43.478 0.00 0.00 38.50 4.30
1894 2461 4.862641 AGTTTATGCCAACATACTCCCT 57.137 40.909 0.00 0.00 38.50 4.20
1895 2462 5.394115 CCAAAGTTTATGCCAACATACTCCC 60.394 44.000 0.00 0.00 38.50 4.30
1896 2463 5.185056 ACCAAAGTTTATGCCAACATACTCC 59.815 40.000 0.00 0.00 38.50 3.85
1897 2464 6.092748 CACCAAAGTTTATGCCAACATACTC 58.907 40.000 0.00 0.00 38.50 2.59
1898 2465 5.566627 GCACCAAAGTTTATGCCAACATACT 60.567 40.000 11.32 0.00 38.50 2.12
1899 2466 4.625311 GCACCAAAGTTTATGCCAACATAC 59.375 41.667 11.32 0.00 38.50 2.39
1986 2590 4.574599 AAGCTTCAAGAAAAATCAGCGT 57.425 36.364 0.00 0.00 32.31 5.07
2049 2761 2.673368 CAGCAAACCGTATCTTCCAGAC 59.327 50.000 0.00 0.00 0.00 3.51
2133 2847 9.573133 CATAAATAGGTTCAAAAGGTCATTGAC 57.427 33.333 8.34 8.34 36.57 3.18
2173 2890 8.034313 AGTGAATAGTACCATGAACACCATAT 57.966 34.615 0.00 0.00 33.31 1.78
2174 2891 7.432148 AGTGAATAGTACCATGAACACCATA 57.568 36.000 0.00 0.00 33.31 2.74
2175 2892 6.313519 AGTGAATAGTACCATGAACACCAT 57.686 37.500 0.00 0.00 35.44 3.55
2176 2893 5.755409 AGTGAATAGTACCATGAACACCA 57.245 39.130 0.00 0.00 0.00 4.17
2187 2905 4.202090 CCCTGTTCCGGTAGTGAATAGTAC 60.202 50.000 0.00 0.00 31.31 2.73
2195 2913 2.267961 GGCCCTGTTCCGGTAGTG 59.732 66.667 0.00 0.00 0.00 2.74
2196 2914 2.172229 TAGGGCCCTGTTCCGGTAGT 62.172 60.000 35.81 5.66 0.00 2.73
2197 2915 0.763223 ATAGGGCCCTGTTCCGGTAG 60.763 60.000 35.81 0.00 0.00 3.18
2198 2916 1.052124 CATAGGGCCCTGTTCCGGTA 61.052 60.000 35.81 12.49 0.00 4.02
2199 2917 2.042261 ATAGGGCCCTGTTCCGGT 59.958 61.111 35.81 8.02 0.00 5.28
2200 2918 2.510906 CATAGGGCCCTGTTCCGG 59.489 66.667 35.81 12.16 0.00 5.14
2201 2919 2.203209 GCATAGGGCCCTGTTCCG 60.203 66.667 35.81 17.20 36.11 4.30
2202 2920 1.152881 CAGCATAGGGCCCTGTTCC 60.153 63.158 35.81 20.19 46.50 3.62
2203 2921 0.464554 GTCAGCATAGGGCCCTGTTC 60.465 60.000 35.81 23.13 46.50 3.18
2204 2922 1.609783 GTCAGCATAGGGCCCTGTT 59.390 57.895 35.81 19.16 46.50 3.16
2205 2923 2.735772 CGTCAGCATAGGGCCCTGT 61.736 63.158 35.81 26.87 46.50 4.00
2206 2924 2.109799 CGTCAGCATAGGGCCCTG 59.890 66.667 35.81 21.10 46.50 4.45
2207 2925 3.164269 CCGTCAGCATAGGGCCCT 61.164 66.667 31.35 31.35 46.50 5.19
2208 2926 4.937431 GCCGTCAGCATAGGGCCC 62.937 72.222 16.46 16.46 46.50 5.80
2211 2929 0.615331 ATATGGCCGTCAGCATAGGG 59.385 55.000 0.00 0.00 46.50 3.53
2212 2930 1.552337 AGATATGGCCGTCAGCATAGG 59.448 52.381 0.00 0.00 46.50 2.57
2213 2931 4.366586 CATAGATATGGCCGTCAGCATAG 58.633 47.826 0.00 0.00 46.50 2.23
2214 2932 3.430790 GCATAGATATGGCCGTCAGCATA 60.431 47.826 0.00 0.00 46.50 3.14
2215 2933 2.679059 GCATAGATATGGCCGTCAGCAT 60.679 50.000 0.00 0.00 46.50 3.79
2216 2934 1.338105 GCATAGATATGGCCGTCAGCA 60.338 52.381 0.00 0.00 46.50 4.41
2217 2935 1.363744 GCATAGATATGGCCGTCAGC 58.636 55.000 0.00 0.04 42.60 4.26
2244 2962 4.760047 CAGACAAGGCCGACGGGG 62.760 72.222 17.22 0.00 39.58 5.73
2245 2963 4.760047 CCAGACAAGGCCGACGGG 62.760 72.222 17.22 0.56 0.00 5.28
2246 2964 4.760047 CCCAGACAAGGCCGACGG 62.760 72.222 10.29 10.29 0.00 4.79
2253 2971 4.567318 GGCATAGCCCAGACAAGG 57.433 61.111 0.00 0.00 44.06 3.61
2268 2986 1.302033 CCTGGATATGGCTGTCGGC 60.302 63.158 0.00 0.00 40.90 5.54
2269 2987 1.302033 GCCTGGATATGGCTGTCGG 60.302 63.158 0.00 0.00 46.38 4.79
2270 2988 4.368391 GCCTGGATATGGCTGTCG 57.632 61.111 0.00 0.00 46.38 4.35
2276 2994 2.343758 CCGACGGCCTGGATATGG 59.656 66.667 0.00 0.00 0.00 2.74
2277 2995 2.357517 GCCGACGGCCTGGATATG 60.358 66.667 28.74 0.00 44.06 1.78
2286 3004 1.274770 GCTTTATTACGCCGACGGC 59.725 57.895 29.10 29.10 46.75 5.68
2287 3005 1.929376 GGCTTTATTACGCCGACGG 59.071 57.895 10.29 10.29 46.04 4.79
2292 3010 1.493134 CCCGACGGCTTTATTACGCC 61.493 60.000 8.86 0.00 42.86 5.68
2293 3011 1.929376 CCCGACGGCTTTATTACGC 59.071 57.895 8.86 0.00 0.00 4.42
2304 3022 0.896019 ATCTCTGGATAGCCCGACGG 60.896 60.000 6.99 6.99 37.93 4.79
2305 3023 1.822506 TATCTCTGGATAGCCCGACG 58.177 55.000 0.00 0.00 37.93 5.12
2306 3024 2.159170 GCATATCTCTGGATAGCCCGAC 60.159 54.545 0.00 0.00 37.78 4.79
2307 3025 2.103373 GCATATCTCTGGATAGCCCGA 58.897 52.381 0.00 0.00 37.78 5.14
2308 3026 1.137872 GGCATATCTCTGGATAGCCCG 59.862 57.143 0.00 0.00 39.72 6.13
2309 3027 1.137872 CGGCATATCTCTGGATAGCCC 59.862 57.143 0.00 7.33 40.93 5.19
2310 3028 2.103373 TCGGCATATCTCTGGATAGCC 58.897 52.381 0.00 0.00 40.79 3.93
2311 3029 2.478709 CGTCGGCATATCTCTGGATAGC 60.479 54.545 0.00 0.00 37.78 2.97
2312 3030 2.098280 CCGTCGGCATATCTCTGGATAG 59.902 54.545 0.00 0.00 37.78 2.08
2313 3031 2.092323 CCGTCGGCATATCTCTGGATA 58.908 52.381 0.00 0.00 38.60 2.59
2314 3032 0.891373 CCGTCGGCATATCTCTGGAT 59.109 55.000 0.00 0.00 36.07 3.41
2315 3033 2.341452 CCGTCGGCATATCTCTGGA 58.659 57.895 0.00 0.00 0.00 3.86
2316 3034 4.974792 CCGTCGGCATATCTCTGG 57.025 61.111 0.00 0.00 0.00 3.86
2354 3072 2.125269 CTTGGGGTAAGCCGACGG 60.125 66.667 10.29 10.29 34.97 4.79
2355 3073 0.247185 TAACTTGGGGTAAGCCGACG 59.753 55.000 0.00 0.00 40.16 5.12
2356 3074 1.730501 GTAACTTGGGGTAAGCCGAC 58.269 55.000 0.00 0.00 40.16 4.79
2357 3075 0.247185 CGTAACTTGGGGTAAGCCGA 59.753 55.000 0.00 0.00 40.16 5.54
2358 3076 1.363885 GCGTAACTTGGGGTAAGCCG 61.364 60.000 0.00 0.00 40.16 5.52
2359 3077 1.028330 GGCGTAACTTGGGGTAAGCC 61.028 60.000 2.71 2.71 40.16 4.35
2360 3078 0.035725 AGGCGTAACTTGGGGTAAGC 60.036 55.000 0.00 0.00 40.16 3.09
2361 3079 2.234414 TGTAGGCGTAACTTGGGGTAAG 59.766 50.000 0.00 0.00 42.30 2.34
2362 3080 2.234414 CTGTAGGCGTAACTTGGGGTAA 59.766 50.000 0.00 0.00 0.00 2.85
2363 3081 1.826720 CTGTAGGCGTAACTTGGGGTA 59.173 52.381 0.00 0.00 0.00 3.69
2364 3082 0.611714 CTGTAGGCGTAACTTGGGGT 59.388 55.000 0.00 0.00 0.00 4.95
2365 3083 0.743345 GCTGTAGGCGTAACTTGGGG 60.743 60.000 0.00 0.00 0.00 4.96
2366 3084 2.763651 GCTGTAGGCGTAACTTGGG 58.236 57.895 0.00 0.00 0.00 4.12
2387 3105 2.972505 GCCCATGTATGCCGACGG 60.973 66.667 10.29 10.29 0.00 4.79
2388 3106 2.972505 GGCCCATGTATGCCGACG 60.973 66.667 0.00 0.00 38.00 5.12
2392 3110 2.972505 CGACGGCCCATGTATGCC 60.973 66.667 0.00 7.83 44.41 4.40
2393 3111 2.972505 CCGACGGCCCATGTATGC 60.973 66.667 0.00 0.00 0.00 3.14
2394 3112 2.972505 GCCGACGGCCCATGTATG 60.973 66.667 28.74 0.00 44.06 2.39
2436 3154 2.432456 TTAGCCGCACAGCACGAG 60.432 61.111 0.00 0.00 34.23 4.18
2437 3155 2.736995 GTTAGCCGCACAGCACGA 60.737 61.111 0.00 0.00 34.23 4.35
2438 3156 4.134187 CGTTAGCCGCACAGCACG 62.134 66.667 0.00 0.00 34.23 5.34
2439 3157 3.788766 CCGTTAGCCGCACAGCAC 61.789 66.667 0.00 0.00 34.23 4.40
2455 3173 2.430921 CGGCATAGATCGGACGCC 60.431 66.667 8.03 8.03 39.45 5.68
2456 3174 1.729838 GTCGGCATAGATCGGACGC 60.730 63.158 5.58 0.00 0.00 5.19
2457 3175 1.440518 CGTCGGCATAGATCGGACG 60.441 63.158 8.27 8.27 45.63 4.79
2458 3176 1.081376 CCGTCGGCATAGATCGGAC 60.081 63.158 0.00 0.00 43.22 4.79
2459 3177 3.351450 CCGTCGGCATAGATCGGA 58.649 61.111 0.00 0.00 43.22 4.55
2497 3215 2.102420 TGACGTGGTAAGGGCATCTATG 59.898 50.000 0.00 0.00 0.00 2.23
2498 3216 2.394632 TGACGTGGTAAGGGCATCTAT 58.605 47.619 0.00 0.00 0.00 1.98
2499 3217 1.855295 TGACGTGGTAAGGGCATCTA 58.145 50.000 0.00 0.00 0.00 1.98
2500 3218 1.204146 ATGACGTGGTAAGGGCATCT 58.796 50.000 0.00 0.00 34.82 2.90
2501 3219 1.583054 GATGACGTGGTAAGGGCATC 58.417 55.000 0.00 0.00 46.43 3.91
2502 3220 0.179084 CGATGACGTGGTAAGGGCAT 60.179 55.000 0.00 0.00 42.66 4.40
2503 3221 1.216977 CGATGACGTGGTAAGGGCA 59.783 57.895 0.00 0.00 32.70 5.36
2504 3222 0.104304 ATCGATGACGTGGTAAGGGC 59.896 55.000 0.00 0.00 40.69 5.19
2505 3223 1.269621 GGATCGATGACGTGGTAAGGG 60.270 57.143 0.54 0.00 40.69 3.95
2506 3224 1.599667 CGGATCGATGACGTGGTAAGG 60.600 57.143 0.54 0.00 40.69 2.69
2507 3225 1.332686 TCGGATCGATGACGTGGTAAG 59.667 52.381 0.54 0.00 40.69 2.34
2508 3226 1.332686 CTCGGATCGATGACGTGGTAA 59.667 52.381 0.54 0.00 40.69 2.85
2509 3227 0.942252 CTCGGATCGATGACGTGGTA 59.058 55.000 0.54 0.00 40.69 3.25
2510 3228 1.725557 CCTCGGATCGATGACGTGGT 61.726 60.000 22.30 0.00 40.69 4.16
2511 3229 1.008424 CCTCGGATCGATGACGTGG 60.008 63.158 19.32 19.32 40.69 4.94
2512 3230 1.658717 GCCTCGGATCGATGACGTG 60.659 63.158 0.54 8.33 40.69 4.49
2513 3231 2.722487 GCCTCGGATCGATGACGT 59.278 61.111 0.54 0.00 40.69 4.34
2514 3232 2.427575 CGCCTCGGATCGATGACG 60.428 66.667 0.54 7.78 34.61 4.35
2515 3233 2.731348 GCGCCTCGGATCGATGAC 60.731 66.667 0.54 0.00 34.61 3.06
2516 3234 3.216292 TGCGCCTCGGATCGATGA 61.216 61.111 0.54 0.00 34.61 2.92
2517 3235 3.032609 GTGCGCCTCGGATCGATG 61.033 66.667 0.54 0.00 34.61 3.84
2518 3236 4.286320 GGTGCGCCTCGGATCGAT 62.286 66.667 9.68 0.00 34.61 3.59
2530 3248 3.014085 ATAGGTGGTGGTCGGTGCG 62.014 63.158 0.00 0.00 0.00 5.34
2531 3249 1.449601 CATAGGTGGTGGTCGGTGC 60.450 63.158 0.00 0.00 0.00 5.01
2532 3250 1.449601 GCATAGGTGGTGGTCGGTG 60.450 63.158 0.00 0.00 0.00 4.94
2533 3251 2.666098 GGCATAGGTGGTGGTCGGT 61.666 63.158 0.00 0.00 0.00 4.69
2534 3252 2.189521 GGCATAGGTGGTGGTCGG 59.810 66.667 0.00 0.00 0.00 4.79
2535 3253 2.202878 CGGCATAGGTGGTGGTCG 60.203 66.667 0.00 0.00 0.00 4.79
2536 3254 1.153429 GTCGGCATAGGTGGTGGTC 60.153 63.158 0.00 0.00 0.00 4.02
2537 3255 2.987125 GTCGGCATAGGTGGTGGT 59.013 61.111 0.00 0.00 0.00 4.16
2538 3256 2.202878 CGTCGGCATAGGTGGTGG 60.203 66.667 0.00 0.00 0.00 4.61
2539 3257 2.202878 CCGTCGGCATAGGTGGTG 60.203 66.667 0.00 0.00 0.00 4.17
2567 3285 4.001652 GGATCAGTGATGTGGCATCTATG 58.998 47.826 11.20 8.54 0.00 2.23
2568 3286 3.306571 CGGATCAGTGATGTGGCATCTAT 60.307 47.826 11.20 0.00 0.00 1.98
2569 3287 2.036346 CGGATCAGTGATGTGGCATCTA 59.964 50.000 11.20 0.00 0.00 1.98
2570 3288 1.202615 CGGATCAGTGATGTGGCATCT 60.203 52.381 11.20 0.00 0.00 2.90
2571 3289 1.224075 CGGATCAGTGATGTGGCATC 58.776 55.000 11.20 2.44 0.00 3.91
2572 3290 0.816825 GCGGATCAGTGATGTGGCAT 60.817 55.000 11.20 0.00 0.00 4.40
2573 3291 1.450134 GCGGATCAGTGATGTGGCA 60.450 57.895 11.20 0.00 0.00 4.92
2574 3292 2.528743 CGCGGATCAGTGATGTGGC 61.529 63.158 11.20 9.67 0.00 5.01
2575 3293 1.884464 CCGCGGATCAGTGATGTGG 60.884 63.158 24.07 9.42 0.00 4.17
2576 3294 2.528743 GCCGCGGATCAGTGATGTG 61.529 63.158 33.48 3.68 0.00 3.21
2577 3295 2.202932 GCCGCGGATCAGTGATGT 60.203 61.111 33.48 0.00 0.00 3.06
2578 3296 3.333189 CGCCGCGGATCAGTGATG 61.333 66.667 33.48 0.00 0.00 3.07
2598 3316 2.338381 GCATAGGGCAGATTGCTGG 58.662 57.895 0.67 0.00 44.28 4.85
2608 3326 2.037136 CATAGCTGCGGCATAGGGC 61.037 63.158 21.93 3.07 41.70 5.19
2609 3327 2.037136 GCATAGCTGCGGCATAGGG 61.037 63.158 21.93 5.31 38.92 3.53
2610 3328 3.571119 GCATAGCTGCGGCATAGG 58.429 61.111 21.93 11.77 38.92 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.