Multiple sequence alignment - TraesCS3B01G079900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G079900 chr3B 100.000 2868 0 0 1696 4563 50531887 50534754 0.000000e+00 5297.0
1 TraesCS3B01G079900 chr3B 100.000 1223 0 0 1 1223 50530192 50531414 0.000000e+00 2259.0
2 TraesCS3B01G079900 chr3B 81.095 1206 133 56 1696 2854 50417784 50418941 0.000000e+00 876.0
3 TraesCS3B01G079900 chr3B 82.653 392 47 17 67 446 50417370 50417752 1.220000e-85 327.0
4 TraesCS3B01G079900 chr3B 84.191 272 35 4 3112 3375 50418940 50419211 1.630000e-64 257.0
5 TraesCS3B01G079900 chr3B 86.014 143 13 6 2641 2777 53199661 53199520 3.680000e-31 147.0
6 TraesCS3B01G079900 chr3B 84.559 136 19 2 2678 2812 50413847 50413981 2.860000e-27 134.0
7 TraesCS3B01G079900 chr3B 85.470 117 11 3 2670 2780 50231146 50231262 2.880000e-22 117.0
8 TraesCS3B01G079900 chr3A 89.555 1168 87 14 1696 2850 40283598 40284743 0.000000e+00 1448.0
9 TraesCS3B01G079900 chr3A 92.699 589 43 0 3111 3699 40284745 40285333 0.000000e+00 850.0
10 TraesCS3B01G079900 chr3A 80.687 1165 125 55 1696 2826 40188695 40189793 0.000000e+00 813.0
11 TraesCS3B01G079900 chr3A 80.645 992 132 45 1 970 40187369 40188322 0.000000e+00 713.0
12 TraesCS3B01G079900 chr3A 89.391 575 47 7 3826 4390 40285618 40286188 0.000000e+00 712.0
13 TraesCS3B01G079900 chr3A 79.044 272 41 14 3385 3648 40190178 40190441 6.070000e-39 172.0
14 TraesCS3B01G079900 chr3A 83.088 136 21 2 2678 2812 40185671 40185805 6.200000e-24 122.0
15 TraesCS3B01G079900 chr3D 89.113 1093 90 17 1775 2854 29622969 29624045 0.000000e+00 1332.0
16 TraesCS3B01G079900 chr3D 85.714 1162 110 28 1696 2820 29619304 29620446 0.000000e+00 1175.0
17 TraesCS3B01G079900 chr3D 91.921 656 52 1 3112 3767 29624044 29624698 0.000000e+00 917.0
18 TraesCS3B01G079900 chr3D 87.897 661 66 13 1 652 29617972 29618627 0.000000e+00 765.0
19 TraesCS3B01G079900 chr3D 80.392 969 120 40 1 952 29621688 29622603 0.000000e+00 673.0
20 TraesCS3B01G079900 chr3D 91.471 340 24 5 3779 4113 29624767 29625106 3.220000e-126 462.0
21 TraesCS3B01G079900 chr3D 90.438 251 16 8 718 962 29618656 29618904 1.580000e-84 324.0
22 TraesCS3B01G079900 chr3D 89.151 212 23 0 1009 1220 29619021 29619232 9.730000e-67 265.0
23 TraesCS3B01G079900 chr3D 82.397 267 44 2 3112 3375 29620483 29620749 3.550000e-56 230.0
24 TraesCS3B01G079900 chr3D 84.163 221 31 3 1005 1223 29622724 29622942 1.290000e-50 211.0
25 TraesCS3B01G079900 chr3D 78.827 307 49 9 3385 3680 29620837 29621138 4.660000e-45 193.0
26 TraesCS3B01G079900 chr3D 90.816 98 5 3 4390 4487 291320321 291320228 1.330000e-25 128.0
27 TraesCS3B01G079900 chr2A 86.641 262 32 3 2853 3113 529559146 529559405 2.080000e-73 287.0
28 TraesCS3B01G079900 chr2A 84.644 267 40 1 2852 3117 705885085 705885351 9.730000e-67 265.0
29 TraesCS3B01G079900 chr6A 86.466 266 27 6 2852 3116 94311146 94310889 2.690000e-72 283.0
30 TraesCS3B01G079900 chr5D 85.283 265 36 2 2852 3116 486826673 486826412 2.090000e-68 270.0
31 TraesCS3B01G079900 chr5D 89.899 99 6 3 4390 4487 250145658 250145563 1.720000e-24 124.0
32 TraesCS3B01G079900 chr7A 84.733 262 40 0 2853 3114 261822111 261822372 3.500000e-66 263.0
33 TraesCS3B01G079900 chr7D 84.411 263 39 2 2855 3116 82852056 82851795 1.630000e-64 257.0
34 TraesCS3B01G079900 chr7D 88.288 111 8 4 4378 4487 424852851 424852957 1.330000e-25 128.0
35 TraesCS3B01G079900 chr7D 87.069 116 10 4 4373 4487 252284110 252283999 4.790000e-25 126.0
36 TraesCS3B01G079900 chr4D 84.351 262 34 3 2853 3113 422939864 422940119 2.730000e-62 250.0
37 TraesCS3B01G079900 chr4D 88.288 111 7 5 4378 4487 190653944 190654049 1.330000e-25 128.0
38 TraesCS3B01G079900 chr1D 83.643 269 41 3 2853 3120 469062574 469062308 2.730000e-62 250.0
39 TraesCS3B01G079900 chr5A 83.582 268 40 2 2849 3113 490827085 490826819 9.800000e-62 248.0
40 TraesCS3B01G079900 chr6D 88.288 111 7 5 4378 4487 77298531 77298636 1.330000e-25 128.0
41 TraesCS3B01G079900 chr2D 90.816 98 5 3 4390 4487 31319381 31319288 1.330000e-25 128.0
42 TraesCS3B01G079900 chr1B 86.842 114 11 3 4360 4472 436383776 436383666 1.720000e-24 124.0
43 TraesCS3B01G079900 chr1B 86.842 114 12 3 4367 4479 550460493 550460382 1.720000e-24 124.0
44 TraesCS3B01G079900 chr5B 94.595 37 0 2 2150 2185 406539069 406539104 6.380000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G079900 chr3B 50530192 50534754 4562 False 3778.000000 5297 100.000000 1 4563 2 chr3B.!!$F3 4562
1 TraesCS3B01G079900 chr3B 50413847 50419211 5364 False 398.500000 876 83.124500 67 3375 4 chr3B.!!$F2 3308
2 TraesCS3B01G079900 chr3A 40283598 40286188 2590 False 1003.333333 1448 90.548333 1696 4390 3 chr3A.!!$F2 2694
3 TraesCS3B01G079900 chr3A 40185671 40190441 4770 False 455.000000 813 80.866000 1 3648 4 chr3A.!!$F1 3647
4 TraesCS3B01G079900 chr3D 29617972 29625106 7134 False 595.181818 1332 86.498545 1 4113 11 chr3D.!!$F1 4112

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 3869 0.387565 TTATCATAGCACGCGAGCCA 59.612 50.0 24.84 12.58 34.23 4.75 F
1113 4684 0.249155 GATTTGCACATGGGATGCCG 60.249 55.0 0.00 0.00 42.69 5.69 F
1189 4760 1.017387 CCGAATGCCAGGTTAGCTTC 58.983 55.0 0.00 0.00 0.00 3.86 F
2851 10090 0.824109 AGCGAATGATCCGGAACTCA 59.176 50.0 9.01 9.68 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2286 9476 0.529378 GGAGAAAACCGGCTCTCGTA 59.471 55.000 17.83 0.0 39.23 3.43 R
2843 10082 0.669077 CGGAGGGAGTATGAGTTCCG 59.331 60.000 0.00 0.0 41.15 4.30 R
2859 10098 1.070445 TGCGAAGTAAAAAGGACCGGA 59.930 47.619 9.46 0.0 0.00 5.14 R
3774 11226 0.108585 CCTCTCTCTCTCTCTCCCCG 59.891 65.000 0.00 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 1735 7.596995 GCCATTTATTTAGTTTTGCACACACTA 59.403 33.333 0.00 0.00 0.00 2.74
48 1747 2.618045 GCACACACTAGGCCCACTTATT 60.618 50.000 0.00 0.00 0.00 1.40
65 1764 6.269315 CACTTATTAGCGAGAGTGAGACATT 58.731 40.000 0.00 0.00 41.46 2.71
123 3581 0.895559 CTCCCTGGCCAAGTCCAAAC 60.896 60.000 7.01 0.00 35.36 2.93
125 3583 1.153756 CCTGGCCAAGTCCAAACCT 59.846 57.895 7.01 0.00 35.36 3.50
133 3591 1.699634 CAAGTCCAAACCTCCCTCTCA 59.300 52.381 0.00 0.00 0.00 3.27
160 3620 0.913451 AGAGCTTGCAGATCTGGGGT 60.913 55.000 23.89 0.00 39.86 4.95
164 3624 3.626996 TTGCAGATCTGGGGTGCGG 62.627 63.158 23.89 0.00 40.23 5.69
183 3643 4.601794 CAACCCTGGCCAGCCACA 62.602 66.667 28.39 0.00 41.89 4.17
190 3650 3.971702 GGCCAGCCACACTTCCCT 61.972 66.667 3.12 0.00 35.81 4.20
191 3651 2.360475 GCCAGCCACACTTCCCTC 60.360 66.667 0.00 0.00 0.00 4.30
284 3748 2.717580 TGTCACCGCCGCTATATTAG 57.282 50.000 0.00 0.00 0.00 1.73
288 3752 2.747989 TCACCGCCGCTATATTAGAGAG 59.252 50.000 0.00 0.00 0.00 3.20
389 3869 0.387565 TTATCATAGCACGCGAGCCA 59.612 50.000 24.84 12.58 34.23 4.75
425 3905 1.349259 GCAATACGCGTCGTCCTTGT 61.349 55.000 18.63 0.00 41.54 3.16
486 3966 3.610821 GCCATAGTTGTGGTCCGTTTTTC 60.611 47.826 0.00 0.00 41.47 2.29
487 3967 3.566322 CCATAGTTGTGGTCCGTTTTTCA 59.434 43.478 0.00 0.00 34.46 2.69
488 3968 4.320202 CCATAGTTGTGGTCCGTTTTTCAG 60.320 45.833 0.00 0.00 34.46 3.02
489 3969 2.718563 AGTTGTGGTCCGTTTTTCAGT 58.281 42.857 0.00 0.00 0.00 3.41
490 3970 3.876341 AGTTGTGGTCCGTTTTTCAGTA 58.124 40.909 0.00 0.00 0.00 2.74
499 3979 7.114388 GTGGTCCGTTTTTCAGTATTTTCATTC 59.886 37.037 0.00 0.00 0.00 2.67
504 3984 9.549509 CCGTTTTTCAGTATTTTCATTCGATTA 57.450 29.630 0.00 0.00 0.00 1.75
575 4060 9.911138 AAAATTTGAGCACACTTTTTGAAAATT 57.089 22.222 0.00 0.00 0.00 1.82
579 4064 8.994429 TTGAGCACACTTTTTGAAAATTAGAA 57.006 26.923 0.00 0.00 0.00 2.10
660 4145 6.845272 TTTTTGAAATTGCAAACGCTTTTC 57.155 29.167 11.31 9.31 37.48 2.29
662 4147 2.537625 TGAAATTGCAAACGCTTTTCGG 59.462 40.909 1.71 0.00 43.86 4.30
664 4149 2.050477 ATTGCAAACGCTTTTCGGAG 57.950 45.000 1.71 0.00 43.86 4.63
666 4151 1.234821 TGCAAACGCTTTTCGGAGAT 58.765 45.000 0.00 0.00 43.86 2.75
902 4391 9.670719 TTTCTTGGAAAAACACAAACAATTTTC 57.329 25.926 0.00 0.00 39.73 2.29
1005 4533 9.927668 AAAAATAGACAAAACGGATTCAATGAT 57.072 25.926 0.00 0.00 0.00 2.45
1006 4534 9.927668 AAAATAGACAAAACGGATTCAATGATT 57.072 25.926 0.00 0.00 0.00 2.57
1007 4535 8.915871 AATAGACAAAACGGATTCAATGATTG 57.084 30.769 0.00 0.00 0.00 2.67
1014 4585 3.758023 ACGGATTCAATGATTGTGCTCAA 59.242 39.130 4.93 3.31 37.98 3.02
1021 4592 5.202765 TCAATGATTGTGCTCAATATGGGT 58.797 37.500 13.66 0.00 43.33 4.51
1059 4630 0.759959 TAGGGTCGTTTTCCTGTGCA 59.240 50.000 0.00 0.00 34.75 4.57
1060 4631 0.535102 AGGGTCGTTTTCCTGTGCAG 60.535 55.000 0.00 0.00 31.11 4.41
1071 4642 1.134521 TCCTGTGCAGTTCAACGACTT 60.135 47.619 0.00 0.00 0.00 3.01
1089 4660 1.878088 CTTTGCTGCACTGAGTGACAT 59.122 47.619 18.18 0.00 35.23 3.06
1101 4672 4.256110 CTGAGTGACATGTAGGATTTGCA 58.744 43.478 0.00 0.00 0.00 4.08
1107 4678 3.720949 CATGTAGGATTTGCACATGGG 57.279 47.619 0.00 0.00 43.68 4.00
1109 4680 3.668141 TGTAGGATTTGCACATGGGAT 57.332 42.857 0.00 0.00 0.00 3.85
1113 4684 0.249155 GATTTGCACATGGGATGCCG 60.249 55.000 0.00 0.00 42.69 5.69
1117 4688 3.879682 CACATGGGATGCCGCACG 61.880 66.667 0.00 0.00 38.09 5.34
1167 4738 1.483827 CTGATCCAGCCTGTTAGAGCA 59.516 52.381 0.00 0.00 0.00 4.26
1189 4760 1.017387 CCGAATGCCAGGTTAGCTTC 58.983 55.000 0.00 0.00 0.00 3.86
1195 4766 1.271379 TGCCAGGTTAGCTTCAAGGTC 60.271 52.381 0.00 0.00 0.00 3.85
1196 4767 1.271379 GCCAGGTTAGCTTCAAGGTCA 60.271 52.381 0.00 0.00 0.00 4.02
1794 5377 3.629719 GCAAGCTTGCGATGATTTTTC 57.370 42.857 33.75 6.12 45.11 2.29
1797 5380 4.201561 GCAAGCTTGCGATGATTTTTCTTC 60.202 41.667 33.75 4.81 45.11 2.87
1950 9117 3.165875 TCCACGGCCCATTTCAAATTTA 58.834 40.909 0.00 0.00 0.00 1.40
2032 9199 6.470877 GTGAACTAGTTTTGAATTCGCAAACA 59.529 34.615 24.33 14.66 37.48 2.83
2044 9225 7.913423 TGAATTCGCAAACATTTTTGAATTCA 58.087 26.923 23.71 23.71 44.83 2.57
2068 9249 8.298854 TCATGAACTTCATTCGAATTTGTGAAT 58.701 29.630 8.21 0.00 40.56 2.57
2070 9251 8.284557 TGAACTTCATTCGAATTTGTGAATTG 57.715 30.769 8.21 2.85 40.56 2.32
2100 9281 5.671493 ACTTCGTAGGATTTTCCGATTCAT 58.329 37.500 0.00 0.00 42.75 2.57
2154 9336 6.428159 AGCTTTCGTAGACATTTGTGAATTCT 59.572 34.615 7.05 0.00 34.32 2.40
2184 9371 9.891828 ACTTTTTCAAATTCACAAACCTTTTTC 57.108 25.926 0.00 0.00 0.00 2.29
2315 9505 1.798813 CGGTTTTCTCCTTTGTCGAGG 59.201 52.381 0.00 0.00 38.20 4.63
2397 9587 2.434843 CCGAGAGCTACATGGGCCA 61.435 63.158 9.61 9.61 0.00 5.36
2422 9632 1.953559 CCTTTCAGGCGCTATAAGCA 58.046 50.000 7.64 0.00 42.58 3.91
2423 9633 1.599542 CCTTTCAGGCGCTATAAGCAC 59.400 52.381 7.64 0.00 42.58 4.40
2518 9731 4.340950 GGTGATTGAAACTTGGAAGGAACA 59.659 41.667 0.00 0.00 0.00 3.18
2594 9814 7.987750 AATATATACAGAGAGAAGAGCGACA 57.012 36.000 0.00 0.00 0.00 4.35
2613 9833 5.342525 GCGACACGAACAATACTCCTATATG 59.657 44.000 0.00 0.00 0.00 1.78
2668 9892 2.688958 CGTAAGTGTAGCTTAGCCTCCT 59.311 50.000 0.00 0.00 40.07 3.69
2702 9933 1.391485 CGATGCTGAAGAAGAACACGG 59.609 52.381 0.00 0.00 0.00 4.94
2710 9941 1.079057 GAAGAACACGGGCTCCCTC 60.079 63.158 3.11 0.00 0.00 4.30
2832 10071 2.411701 CGGCGGCGTTGAGATAGA 59.588 61.111 24.74 0.00 0.00 1.98
2836 10075 1.355563 CGGCGTTGAGATAGAGCGA 59.644 57.895 0.00 0.00 0.00 4.93
2843 10082 3.917380 CGTTGAGATAGAGCGAATGATCC 59.083 47.826 0.00 0.00 0.00 3.36
2851 10090 0.824109 AGCGAATGATCCGGAACTCA 59.176 50.000 9.01 9.68 0.00 3.41
2852 10091 1.414181 AGCGAATGATCCGGAACTCAT 59.586 47.619 9.01 11.96 33.59 2.90
2853 10092 2.628178 AGCGAATGATCCGGAACTCATA 59.372 45.455 18.62 0.00 31.95 2.15
2854 10093 2.731976 GCGAATGATCCGGAACTCATAC 59.268 50.000 18.62 9.51 31.95 2.39
2855 10094 3.553096 GCGAATGATCCGGAACTCATACT 60.553 47.826 18.62 6.48 31.95 2.12
2856 10095 4.230657 CGAATGATCCGGAACTCATACTC 58.769 47.826 18.62 13.16 31.95 2.59
2857 10096 4.561105 GAATGATCCGGAACTCATACTCC 58.439 47.826 18.62 7.22 31.95 3.85
2858 10097 2.317040 TGATCCGGAACTCATACTCCC 58.683 52.381 9.01 0.00 0.00 4.30
2859 10098 2.091278 TGATCCGGAACTCATACTCCCT 60.091 50.000 9.01 0.00 0.00 4.20
2860 10099 2.068834 TCCGGAACTCATACTCCCTC 57.931 55.000 0.00 0.00 0.00 4.30
2861 10100 1.041437 CCGGAACTCATACTCCCTCC 58.959 60.000 0.00 0.00 0.00 4.30
2862 10101 0.669077 CGGAACTCATACTCCCTCCG 59.331 60.000 0.00 0.00 39.79 4.63
2863 10102 1.041437 GGAACTCATACTCCCTCCGG 58.959 60.000 0.00 0.00 0.00 5.14
2864 10103 1.688627 GGAACTCATACTCCCTCCGGT 60.689 57.143 0.00 0.00 0.00 5.28
2865 10104 1.682323 GAACTCATACTCCCTCCGGTC 59.318 57.143 0.00 0.00 0.00 4.79
2866 10105 0.106116 ACTCATACTCCCTCCGGTCC 60.106 60.000 0.00 0.00 0.00 4.46
2867 10106 0.186386 CTCATACTCCCTCCGGTCCT 59.814 60.000 0.00 0.00 0.00 3.85
2868 10107 0.635009 TCATACTCCCTCCGGTCCTT 59.365 55.000 0.00 0.00 0.00 3.36
2869 10108 1.007963 TCATACTCCCTCCGGTCCTTT 59.992 52.381 0.00 0.00 0.00 3.11
2870 10109 1.838077 CATACTCCCTCCGGTCCTTTT 59.162 52.381 0.00 0.00 0.00 2.27
2871 10110 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
2872 10111 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
2873 10112 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
2874 10113 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
2875 10114 2.305052 CTCCCTCCGGTCCTTTTTACTT 59.695 50.000 0.00 0.00 0.00 2.24
2876 10115 2.303890 TCCCTCCGGTCCTTTTTACTTC 59.696 50.000 0.00 0.00 0.00 3.01
2877 10116 2.344025 CCTCCGGTCCTTTTTACTTCG 58.656 52.381 0.00 0.00 0.00 3.79
2878 10117 1.730612 CTCCGGTCCTTTTTACTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
2879 10118 1.070445 TCCGGTCCTTTTTACTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
2880 10119 2.081462 CCGGTCCTTTTTACTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
2881 10120 2.095372 CCGGTCCTTTTTACTTCGCATC 59.905 50.000 0.00 0.00 0.00 3.91
2882 10121 3.000727 CGGTCCTTTTTACTTCGCATCT 58.999 45.455 0.00 0.00 0.00 2.90
2883 10122 4.178540 CGGTCCTTTTTACTTCGCATCTA 58.821 43.478 0.00 0.00 0.00 1.98
2884 10123 4.628333 CGGTCCTTTTTACTTCGCATCTAA 59.372 41.667 0.00 0.00 0.00 2.10
2885 10124 5.220416 CGGTCCTTTTTACTTCGCATCTAAG 60.220 44.000 0.00 0.00 0.00 2.18
2886 10125 5.873164 GGTCCTTTTTACTTCGCATCTAAGA 59.127 40.000 0.00 0.00 0.00 2.10
2887 10126 6.539103 GGTCCTTTTTACTTCGCATCTAAGAT 59.461 38.462 0.00 0.00 0.00 2.40
2888 10127 7.065923 GGTCCTTTTTACTTCGCATCTAAGATT 59.934 37.037 0.00 0.00 0.00 2.40
2889 10128 8.451748 GTCCTTTTTACTTCGCATCTAAGATTT 58.548 33.333 0.00 0.00 0.00 2.17
2890 10129 8.450964 TCCTTTTTACTTCGCATCTAAGATTTG 58.549 33.333 0.00 0.00 0.00 2.32
2891 10130 8.237267 CCTTTTTACTTCGCATCTAAGATTTGT 58.763 33.333 0.00 0.00 0.00 2.83
2892 10131 9.267096 CTTTTTACTTCGCATCTAAGATTTGTC 57.733 33.333 0.00 0.00 0.00 3.18
2893 10132 8.547967 TTTTACTTCGCATCTAAGATTTGTCT 57.452 30.769 0.00 0.00 0.00 3.41
2894 10133 7.525688 TTACTTCGCATCTAAGATTTGTCTG 57.474 36.000 0.00 0.00 0.00 3.51
2895 10134 5.724328 ACTTCGCATCTAAGATTTGTCTGA 58.276 37.500 0.00 0.00 0.00 3.27
2896 10135 6.166279 ACTTCGCATCTAAGATTTGTCTGAA 58.834 36.000 0.00 0.00 0.00 3.02
2897 10136 6.312426 ACTTCGCATCTAAGATTTGTCTGAAG 59.688 38.462 0.00 0.00 35.35 3.02
2898 10137 5.724328 TCGCATCTAAGATTTGTCTGAAGT 58.276 37.500 0.00 0.00 0.00 3.01
2899 10138 5.807520 TCGCATCTAAGATTTGTCTGAAGTC 59.192 40.000 0.00 0.00 0.00 3.01
2900 10139 5.578336 CGCATCTAAGATTTGTCTGAAGTCA 59.422 40.000 0.00 0.00 0.00 3.41
2901 10140 6.091305 CGCATCTAAGATTTGTCTGAAGTCAA 59.909 38.462 0.00 0.00 0.00 3.18
2902 10141 7.360353 CGCATCTAAGATTTGTCTGAAGTCAAA 60.360 37.037 5.43 5.43 37.44 2.69
2903 10142 7.748241 GCATCTAAGATTTGTCTGAAGTCAAAC 59.252 37.037 5.13 1.59 36.30 2.93
2904 10143 8.997323 CATCTAAGATTTGTCTGAAGTCAAACT 58.003 33.333 5.13 3.38 36.30 2.66
2905 10144 8.964476 TCTAAGATTTGTCTGAAGTCAAACTT 57.036 30.769 5.13 11.28 41.95 2.66
2908 10147 8.738645 AAGATTTGTCTGAAGTCAAACTTAGT 57.261 30.769 5.13 0.00 38.80 2.24
2909 10148 8.371770 AGATTTGTCTGAAGTCAAACTTAGTC 57.628 34.615 5.13 0.56 38.80 2.59
2910 10149 7.987458 AGATTTGTCTGAAGTCAAACTTAGTCA 59.013 33.333 5.13 0.00 38.80 3.41
2911 10150 7.915293 TTTGTCTGAAGTCAAACTTAGTCAA 57.085 32.000 0.00 0.65 38.80 3.18
2912 10151 8.506168 TTTGTCTGAAGTCAAACTTAGTCAAT 57.494 30.769 0.00 0.00 38.80 2.57
2913 10152 8.506168 TTGTCTGAAGTCAAACTTAGTCAATT 57.494 30.769 0.00 0.00 38.80 2.32
2914 10153 8.506168 TGTCTGAAGTCAAACTTAGTCAATTT 57.494 30.769 0.00 0.00 38.80 1.82
2915 10154 8.956426 TGTCTGAAGTCAAACTTAGTCAATTTT 58.044 29.630 0.00 0.00 38.80 1.82
2916 10155 9.226345 GTCTGAAGTCAAACTTAGTCAATTTTG 57.774 33.333 0.00 0.00 38.80 2.44
2917 10156 9.173021 TCTGAAGTCAAACTTAGTCAATTTTGA 57.827 29.630 0.00 0.00 38.80 2.69
3065 10304 8.716646 AAGTTGGTCAAATTTTAGGAAGTTTG 57.283 30.769 0.00 2.02 41.29 2.93
3066 10305 8.073467 AGTTGGTCAAATTTTAGGAAGTTTGA 57.927 30.769 5.93 5.93 44.28 2.69
3071 10310 7.106439 TCAAATTTTAGGAAGTTTGACTGCA 57.894 32.000 5.93 0.00 42.74 4.41
3072 10311 7.202526 TCAAATTTTAGGAAGTTTGACTGCAG 58.797 34.615 13.48 13.48 42.74 4.41
3073 10312 6.959639 AATTTTAGGAAGTTTGACTGCAGA 57.040 33.333 23.35 0.00 0.00 4.26
3074 10313 5.751243 TTTTAGGAAGTTTGACTGCAGAC 57.249 39.130 23.35 15.92 0.00 3.51
3075 10314 4.415881 TTAGGAAGTTTGACTGCAGACA 57.584 40.909 23.35 18.86 31.90 3.41
3076 10315 3.281727 AGGAAGTTTGACTGCAGACAA 57.718 42.857 24.48 24.48 31.90 3.18
3077 10316 3.620488 AGGAAGTTTGACTGCAGACAAA 58.380 40.909 31.28 31.28 37.36 2.83
3078 10317 4.210331 AGGAAGTTTGACTGCAGACAAAT 58.790 39.130 35.02 25.21 40.50 2.32
3079 10318 4.276926 AGGAAGTTTGACTGCAGACAAATC 59.723 41.667 35.02 29.41 40.50 2.17
3080 10319 4.540824 GAAGTTTGACTGCAGACAAATCC 58.459 43.478 35.02 26.28 40.50 3.01
3081 10320 3.825328 AGTTTGACTGCAGACAAATCCT 58.175 40.909 35.02 27.61 40.50 3.24
3082 10321 4.973168 AGTTTGACTGCAGACAAATCCTA 58.027 39.130 35.02 18.40 40.50 2.94
3083 10322 5.564550 AGTTTGACTGCAGACAAATCCTAT 58.435 37.500 35.02 21.10 40.50 2.57
3084 10323 6.711277 AGTTTGACTGCAGACAAATCCTATA 58.289 36.000 35.02 17.18 40.50 1.31
3085 10324 7.341805 AGTTTGACTGCAGACAAATCCTATAT 58.658 34.615 35.02 18.53 40.50 0.86
3086 10325 7.281774 AGTTTGACTGCAGACAAATCCTATATG 59.718 37.037 35.02 2.56 40.50 1.78
3087 10326 6.239217 TGACTGCAGACAAATCCTATATGT 57.761 37.500 23.35 0.00 0.00 2.29
3088 10327 7.360113 TGACTGCAGACAAATCCTATATGTA 57.640 36.000 23.35 0.00 0.00 2.29
3089 10328 7.791029 TGACTGCAGACAAATCCTATATGTAA 58.209 34.615 23.35 0.00 0.00 2.41
3090 10329 8.264347 TGACTGCAGACAAATCCTATATGTAAA 58.736 33.333 23.35 0.00 0.00 2.01
3091 10330 8.438676 ACTGCAGACAAATCCTATATGTAAAC 57.561 34.615 23.35 0.00 0.00 2.01
3092 10331 8.267894 ACTGCAGACAAATCCTATATGTAAACT 58.732 33.333 23.35 0.00 0.00 2.66
3093 10332 9.764363 CTGCAGACAAATCCTATATGTAAACTA 57.236 33.333 8.42 0.00 0.00 2.24
3103 10342 9.774413 ATCCTATATGTAAACTAAAAAGGACCG 57.226 33.333 0.00 0.00 33.67 4.79
3104 10343 8.206189 TCCTATATGTAAACTAAAAAGGACCGG 58.794 37.037 0.00 0.00 0.00 5.28
3105 10344 8.206189 CCTATATGTAAACTAAAAAGGACCGGA 58.794 37.037 9.46 0.00 0.00 5.14
3106 10345 9.257651 CTATATGTAAACTAAAAAGGACCGGAG 57.742 37.037 9.46 0.00 0.00 4.63
3194 10435 1.868251 CGAAGTGCTACGCGAGGTC 60.868 63.158 15.93 0.00 0.00 3.85
3214 10455 2.725203 TTTCCCGAACTGCACCGAGG 62.725 60.000 0.57 0.00 0.00 4.63
3235 10476 1.855213 GCGGTGCAAGATGTTCTGCA 61.855 55.000 0.00 0.00 31.53 4.41
3304 10545 5.420421 TGCTGCCCTGTTGCTTAATTATAAA 59.580 36.000 0.00 0.00 0.00 1.40
3369 10616 5.700402 ATAAGCAATCTTGGTACACCTCT 57.300 39.130 0.00 0.00 39.29 3.69
3382 10629 6.418101 TGGTACACCTCTAAATACGTAGTCT 58.582 40.000 0.08 0.00 38.47 3.24
3485 10807 3.185246 ACAATGTGCTCGCTATTAGCT 57.815 42.857 13.55 0.00 39.60 3.32
3490 10812 5.659048 ATGTGCTCGCTATTAGCTTTAAC 57.341 39.130 13.55 7.55 39.60 2.01
3581 10903 9.533831 AGAATAAAGAAACACATTTAGGATGGT 57.466 29.630 0.00 0.00 0.00 3.55
3629 10957 2.727103 TTTTTCGAGGGCAGGTTGG 58.273 52.632 0.00 0.00 0.00 3.77
3680 11008 9.850628 CACAATATCATAAGGGCAATCAAATAG 57.149 33.333 0.00 0.00 0.00 1.73
3773 11225 8.164070 AGATACAAAGGGAGTACAAAAAGATGT 58.836 33.333 0.00 0.00 37.32 3.06
3774 11226 6.635030 ACAAAGGGAGTACAAAAAGATGTC 57.365 37.500 0.00 0.00 34.75 3.06
3776 11228 3.939066 AGGGAGTACAAAAAGATGTCGG 58.061 45.455 0.00 0.00 34.75 4.79
3813 11324 4.460263 AGGACTGCATGTAAAAGTTGTCA 58.540 39.130 0.00 0.00 0.00 3.58
3881 11396 4.434520 GTCCCAACTGCACTAGAACTATC 58.565 47.826 0.00 0.00 0.00 2.08
3893 11408 9.836864 TGCACTAGAACTATCATTGTCAATATT 57.163 29.630 0.00 0.00 0.00 1.28
3953 11469 1.700739 TGAATGGTTACGAGGGTGGTT 59.299 47.619 0.00 0.00 0.00 3.67
3971 11487 2.306512 GGTTGTAACCCTATCCACCACA 59.693 50.000 2.28 0.00 43.43 4.17
3972 11488 3.053917 GGTTGTAACCCTATCCACCACAT 60.054 47.826 2.28 0.00 43.43 3.21
4037 11553 2.191400 TGTTCTTCTGATGAGAGGGGG 58.809 52.381 0.00 0.00 0.00 5.40
4124 11641 1.595794 CCAGTAAACGGTGTGTGTGTC 59.404 52.381 0.00 0.00 0.00 3.67
4125 11642 2.272678 CAGTAAACGGTGTGTGTGTCA 58.727 47.619 0.00 0.00 0.00 3.58
4129 11646 0.036765 AACGGTGTGTGTGTCAGTGT 60.037 50.000 0.00 0.00 0.00 3.55
4131 11648 0.739462 CGGTGTGTGTGTCAGTGTGT 60.739 55.000 0.00 0.00 0.00 3.72
4133 11650 1.438651 GTGTGTGTGTCAGTGTGTGT 58.561 50.000 0.00 0.00 0.00 3.72
4135 11652 1.270571 TGTGTGTGTCAGTGTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
4145 11662 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
4146 11663 0.250510 TGTGTGTGTGTGTGTGTGGT 60.251 50.000 0.00 0.00 0.00 4.16
4181 11698 2.657848 CGCATGTGCACATTTTACACTG 59.342 45.455 29.48 17.93 42.21 3.66
4186 11703 5.666969 TGTGCACATTTTACACTGTACTC 57.333 39.130 17.42 0.00 35.33 2.59
4210 11727 6.771749 TCGGTGTTTCTAAAATAAGGTTCCAA 59.228 34.615 0.00 0.00 0.00 3.53
4240 11758 3.792401 TGAATACAACATACAGGCGAGG 58.208 45.455 0.00 0.00 0.00 4.63
4242 11760 4.100963 TGAATACAACATACAGGCGAGGAT 59.899 41.667 0.00 0.00 0.00 3.24
4248 11766 5.128171 ACAACATACAGGCGAGGATTAGTTA 59.872 40.000 0.00 0.00 0.00 2.24
4255 11773 3.132467 AGGCGAGGATTAGTTACTTCACC 59.868 47.826 0.00 0.00 0.00 4.02
4278 11800 8.028938 CACCGGTTTCAAAATCATCTTAGAATT 58.971 33.333 2.97 0.00 0.00 2.17
4285 11807 6.914215 TCAAAATCATCTTAGAATTGATGCGC 59.086 34.615 0.00 0.00 39.69 6.09
4318 11840 7.909267 TGCGTATCAGTTGAGAAAGAATTATG 58.091 34.615 0.00 0.00 0.00 1.90
4321 11843 9.907576 CGTATCAGTTGAGAAAGAATTATGAAC 57.092 33.333 0.00 0.00 0.00 3.18
4399 11921 9.516546 AATATTTAATTCTTATTCCCTCCGTCC 57.483 33.333 0.00 0.00 0.00 4.79
4400 11922 3.859061 AATTCTTATTCCCTCCGTCCC 57.141 47.619 0.00 0.00 0.00 4.46
4401 11923 2.257391 TTCTTATTCCCTCCGTCCCA 57.743 50.000 0.00 0.00 0.00 4.37
4402 11924 2.489528 TCTTATTCCCTCCGTCCCAT 57.510 50.000 0.00 0.00 0.00 4.00
4403 11925 3.623466 TCTTATTCCCTCCGTCCCATA 57.377 47.619 0.00 0.00 0.00 2.74
4404 11926 3.931317 TCTTATTCCCTCCGTCCCATAA 58.069 45.455 0.00 0.00 0.00 1.90
4405 11927 4.499472 TCTTATTCCCTCCGTCCCATAAT 58.501 43.478 0.00 0.00 0.00 1.28
4406 11928 5.657446 TCTTATTCCCTCCGTCCCATAATA 58.343 41.667 0.00 0.00 0.00 0.98
4407 11929 6.269194 TCTTATTCCCTCCGTCCCATAATAT 58.731 40.000 0.00 0.00 0.00 1.28
4408 11930 7.424172 TCTTATTCCCTCCGTCCCATAATATA 58.576 38.462 0.00 0.00 0.00 0.86
4409 11931 7.902401 TCTTATTCCCTCCGTCCCATAATATAA 59.098 37.037 0.00 0.00 0.00 0.98
4410 11932 6.561519 ATTCCCTCCGTCCCATAATATAAG 57.438 41.667 0.00 0.00 0.00 1.73
4411 11933 5.279562 TCCCTCCGTCCCATAATATAAGA 57.720 43.478 0.00 0.00 0.00 2.10
4412 11934 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
4413 11935 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
4414 11936 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
4415 11937 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
4416 11938 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
4417 11939 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
4418 11940 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
4419 11941 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
4466 11988 9.712305 AAATGTTCTTATATTATGAGACGGAGG 57.288 33.333 0.00 0.00 0.00 4.30
4467 11989 7.228314 TGTTCTTATATTATGAGACGGAGGG 57.772 40.000 0.00 0.00 0.00 4.30
4468 11990 7.008332 TGTTCTTATATTATGAGACGGAGGGA 58.992 38.462 0.00 0.00 0.00 4.20
4469 11991 7.176865 TGTTCTTATATTATGAGACGGAGGGAG 59.823 40.741 0.00 0.00 0.00 4.30
4470 11992 6.791371 TCTTATATTATGAGACGGAGGGAGT 58.209 40.000 0.00 0.00 0.00 3.85
4471 11993 7.925622 TCTTATATTATGAGACGGAGGGAGTA 58.074 38.462 0.00 0.00 0.00 2.59
4472 11994 8.558312 TCTTATATTATGAGACGGAGGGAGTAT 58.442 37.037 0.00 0.00 0.00 2.12
4473 11995 9.191479 CTTATATTATGAGACGGAGGGAGTATT 57.809 37.037 0.00 0.00 0.00 1.89
4474 11996 9.543231 TTATATTATGAGACGGAGGGAGTATTT 57.457 33.333 0.00 0.00 0.00 1.40
4475 11997 6.749036 ATTATGAGACGGAGGGAGTATTTT 57.251 37.500 0.00 0.00 0.00 1.82
4476 11998 6.555463 TTATGAGACGGAGGGAGTATTTTT 57.445 37.500 0.00 0.00 0.00 1.94
4477 11999 4.467198 TGAGACGGAGGGAGTATTTTTC 57.533 45.455 0.00 0.00 0.00 2.29
4478 12000 3.835978 TGAGACGGAGGGAGTATTTTTCA 59.164 43.478 0.00 0.00 0.00 2.69
4479 12001 4.469945 TGAGACGGAGGGAGTATTTTTCAT 59.530 41.667 0.00 0.00 0.00 2.57
4480 12002 5.659525 TGAGACGGAGGGAGTATTTTTCATA 59.340 40.000 0.00 0.00 0.00 2.15
4481 12003 6.155565 TGAGACGGAGGGAGTATTTTTCATAA 59.844 38.462 0.00 0.00 0.00 1.90
4482 12004 6.954232 AGACGGAGGGAGTATTTTTCATAAA 58.046 36.000 0.00 0.00 0.00 1.40
4483 12005 7.399634 AGACGGAGGGAGTATTTTTCATAAAA 58.600 34.615 0.00 0.00 37.62 1.52
4484 12006 7.336176 AGACGGAGGGAGTATTTTTCATAAAAC 59.664 37.037 0.00 0.00 36.15 2.43
4485 12007 6.943718 ACGGAGGGAGTATTTTTCATAAAACA 59.056 34.615 0.00 0.00 36.15 2.83
4486 12008 7.449086 ACGGAGGGAGTATTTTTCATAAAACAA 59.551 33.333 0.00 0.00 36.15 2.83
4487 12009 7.968405 CGGAGGGAGTATTTTTCATAAAACAAG 59.032 37.037 0.00 0.00 36.15 3.16
4488 12010 9.020731 GGAGGGAGTATTTTTCATAAAACAAGA 57.979 33.333 0.00 0.00 36.15 3.02
4537 12059 8.989980 GGCCATATATCGTATTAAAGAATAGGC 58.010 37.037 0.00 0.00 34.69 3.93
4538 12060 8.989980 GCCATATATCGTATTAAAGAATAGGCC 58.010 37.037 0.00 0.00 34.69 5.19
4544 12066 7.925043 TCGTATTAAAGAATAGGCCAAAACA 57.075 32.000 5.01 0.00 34.69 2.83
4545 12067 8.338072 TCGTATTAAAGAATAGGCCAAAACAA 57.662 30.769 5.01 0.00 34.69 2.83
4546 12068 8.794553 TCGTATTAAAGAATAGGCCAAAACAAA 58.205 29.630 5.01 0.00 34.69 2.83
4547 12069 9.413048 CGTATTAAAGAATAGGCCAAAACAAAA 57.587 29.630 5.01 0.00 29.34 2.44
4550 12072 9.791801 ATTAAAGAATAGGCCAAAACAAAACAT 57.208 25.926 5.01 0.00 0.00 2.71
4552 12074 8.601845 AAAGAATAGGCCAAAACAAAACATAC 57.398 30.769 5.01 0.00 0.00 2.39
4553 12075 7.539034 AGAATAGGCCAAAACAAAACATACT 57.461 32.000 5.01 0.00 0.00 2.12
4554 12076 8.644374 AGAATAGGCCAAAACAAAACATACTA 57.356 30.769 5.01 0.00 0.00 1.82
4555 12077 8.520351 AGAATAGGCCAAAACAAAACATACTAC 58.480 33.333 5.01 0.00 0.00 2.73
4556 12078 8.417273 AATAGGCCAAAACAAAACATACTACT 57.583 30.769 5.01 0.00 0.00 2.57
4557 12079 6.084326 AGGCCAAAACAAAACATACTACTG 57.916 37.500 5.01 0.00 0.00 2.74
4558 12080 5.596772 AGGCCAAAACAAAACATACTACTGT 59.403 36.000 5.01 0.00 0.00 3.55
4559 12081 6.773685 AGGCCAAAACAAAACATACTACTGTA 59.226 34.615 5.01 0.00 0.00 2.74
4560 12082 7.450323 AGGCCAAAACAAAACATACTACTGTAT 59.550 33.333 5.01 0.00 39.76 2.29
4561 12083 7.753580 GGCCAAAACAAAACATACTACTGTATC 59.246 37.037 0.00 0.00 37.28 2.24
4562 12084 8.293867 GCCAAAACAAAACATACTACTGTATCA 58.706 33.333 0.00 0.00 37.28 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.032786 GCAAAACTAAATAAATGGCGCAGG 59.967 41.667 10.83 0.00 0.00 4.85
6 7 4.624882 TGCAAAACTAAATAAATGGCGCAG 59.375 37.500 10.83 0.00 0.00 5.18
7 8 4.387256 GTGCAAAACTAAATAAATGGCGCA 59.613 37.500 10.83 0.00 0.00 6.09
36 1735 1.689273 CTCTCGCTAATAAGTGGGCCT 59.311 52.381 4.53 0.00 33.42 5.19
48 1747 5.175090 CATGTAATGTCTCACTCTCGCTA 57.825 43.478 0.00 0.00 40.20 4.26
65 1764 1.078709 GCACTTTCTCGCTGCATGTA 58.921 50.000 0.00 0.00 0.00 2.29
101 3559 1.065410 TGGACTTGGCCAGGGAGAAA 61.065 55.000 20.34 0.00 33.10 2.52
123 3581 1.905215 TCTCTGCTTTTGAGAGGGAGG 59.095 52.381 0.00 0.00 38.02 4.30
172 3632 4.284550 GGGAAGTGTGGCTGGCCA 62.285 66.667 10.55 10.55 45.02 5.36
182 3642 0.252742 ACCTAGGTGGGAGGGAAGTG 60.253 60.000 15.42 0.00 41.11 3.16
183 3643 0.042881 GACCTAGGTGGGAGGGAAGT 59.957 60.000 22.10 0.00 41.11 3.01
190 3650 2.044492 AGAAGTGATGACCTAGGTGGGA 59.956 50.000 22.10 2.88 41.11 4.37
191 3651 2.432510 GAGAAGTGATGACCTAGGTGGG 59.567 54.545 22.10 0.00 41.11 4.61
374 3854 2.509111 TGTGGCTCGCGTGCTATG 60.509 61.111 29.41 5.53 0.00 2.23
375 3855 2.202797 CTGTGGCTCGCGTGCTAT 60.203 61.111 29.41 0.00 0.00 2.97
416 3896 2.357034 GCTCGCCAACAAGGACGA 60.357 61.111 0.00 0.00 41.42 4.20
417 3897 3.423154 GGCTCGCCAACAAGGACG 61.423 66.667 2.41 0.00 41.22 4.79
425 3905 4.077184 CCTACCACGGCTCGCCAA 62.077 66.667 8.87 0.00 35.37 4.52
459 3939 1.750778 GGACCACAACTATGGCAATGG 59.249 52.381 0.00 0.00 44.33 3.16
474 3954 6.642707 ATGAAAATACTGAAAAACGGACCA 57.357 33.333 0.00 0.00 0.00 4.02
648 4133 3.465122 TTATCTCCGAAAAGCGTTTGC 57.535 42.857 1.24 0.00 43.24 3.68
791 4279 4.217754 TGTACGAAAGGATGTTTGCAAC 57.782 40.909 0.00 0.00 0.00 4.17
980 4508 9.927668 AATCATTGAATCCGTTTTGTCTATTTT 57.072 25.926 0.00 0.00 0.00 1.82
984 4512 7.304735 CACAATCATTGAATCCGTTTTGTCTA 58.695 34.615 3.79 0.00 0.00 2.59
988 4516 4.925054 AGCACAATCATTGAATCCGTTTTG 59.075 37.500 3.79 0.00 0.00 2.44
994 4522 6.866770 CCATATTGAGCACAATCATTGAATCC 59.133 38.462 12.87 0.00 44.34 3.01
1002 4530 3.205338 CGACCCATATTGAGCACAATCA 58.795 45.455 12.87 1.22 44.34 2.57
1005 4533 2.627945 GACGACCCATATTGAGCACAA 58.372 47.619 0.00 0.00 40.42 3.33
1006 4534 1.134521 GGACGACCCATATTGAGCACA 60.135 52.381 0.00 0.00 34.14 4.57
1007 4535 1.583054 GGACGACCCATATTGAGCAC 58.417 55.000 0.00 0.00 34.14 4.40
1021 4592 2.516227 AGAGACAAGAGATGGGACGA 57.484 50.000 0.00 0.00 0.00 4.20
1059 4630 1.064060 GTGCAGCAAAGTCGTTGAACT 59.936 47.619 0.00 0.00 39.87 3.01
1060 4631 1.064060 AGTGCAGCAAAGTCGTTGAAC 59.936 47.619 0.00 0.00 39.87 3.18
1071 4642 1.232119 CATGTCACTCAGTGCAGCAA 58.768 50.000 0.00 0.00 32.98 3.91
1089 4660 3.289836 CATCCCATGTGCAAATCCTACA 58.710 45.455 0.00 0.00 0.00 2.74
1113 4684 3.419759 AAATGTCCCGACGCGTGC 61.420 61.111 20.70 7.65 0.00 5.34
1117 4688 1.573829 TTGCTCAAATGTCCCGACGC 61.574 55.000 0.00 0.00 0.00 5.19
1167 4738 1.032114 GCTAACCTGGCATTCGGCTT 61.032 55.000 0.00 0.00 44.01 4.35
1189 4760 1.202806 TCTTGCCCAGTTCTGACCTTG 60.203 52.381 1.00 0.00 0.00 3.61
1195 4766 1.673168 GCCTATCTTGCCCAGTTCTG 58.327 55.000 0.00 0.00 0.00 3.02
1196 4767 0.548510 GGCCTATCTTGCCCAGTTCT 59.451 55.000 0.00 0.00 43.33 3.01
1723 5294 8.969267 CGATGAATGAAGTGTAGTACCTAAATC 58.031 37.037 0.00 0.00 0.00 2.17
1924 9091 1.548269 TGAAATGGGCCGTGGAATTTC 59.452 47.619 15.68 15.68 38.78 2.17
1928 9095 1.638529 ATTTGAAATGGGCCGTGGAA 58.361 45.000 0.00 0.00 0.00 3.53
1930 9097 2.470983 AAATTTGAAATGGGCCGTGG 57.529 45.000 0.00 0.00 0.00 4.94
1950 9117 8.234546 AGTTCGCGAATTAAATAAATGTTCACT 58.765 29.630 26.23 8.58 0.00 3.41
2015 9182 7.945326 TCAAAAATGTTTGCGAATTCAAAAC 57.055 28.000 19.60 19.60 43.30 2.43
2032 9199 9.695526 TCGAATGAAGTTCATGAATTCAAAAAT 57.304 25.926 24.30 6.65 37.15 1.82
2044 9225 8.918658 CAATTCACAAATTCGAATGAAGTTCAT 58.081 29.630 12.25 12.75 40.16 2.57
2053 9234 8.137437 AGTCAGAAACAATTCACAAATTCGAAT 58.863 29.630 4.39 4.39 38.06 3.34
2068 9249 6.204108 GGAAAATCCTACGAAGTCAGAAACAA 59.796 38.462 0.00 0.00 43.93 2.83
2070 9251 5.163982 CGGAAAATCCTACGAAGTCAGAAAC 60.164 44.000 0.00 0.00 43.93 2.78
2154 9336 7.164803 AGGTTTGTGAATTTGAAAAAGTTCCA 58.835 30.769 0.00 0.00 32.28 3.53
2215 9402 7.853929 TCTCACAATGTTAGCGAGTTTTAAAAC 59.146 33.333 21.06 21.06 39.17 2.43
2268 9457 8.604035 GCTCTCGTATTCTTTATGTTGAAATGA 58.396 33.333 0.00 0.00 0.00 2.57
2269 9458 7.852945 GGCTCTCGTATTCTTTATGTTGAAATG 59.147 37.037 0.00 0.00 0.00 2.32
2277 9466 3.978687 ACCGGCTCTCGTATTCTTTATG 58.021 45.455 0.00 0.00 37.11 1.90
2286 9476 0.529378 GGAGAAAACCGGCTCTCGTA 59.471 55.000 17.83 0.00 39.23 3.43
2315 9505 0.892063 AGTTCGGCTCTTCCTGTCTC 59.108 55.000 0.00 0.00 0.00 3.36
2375 9565 1.384989 CCCATGTAGCTCTCGGTCGT 61.385 60.000 0.00 0.00 0.00 4.34
2421 9631 1.817209 GGAGAGCTCCTAACCGGTG 59.183 63.158 8.52 0.00 46.16 4.94
2422 9632 4.358810 GGAGAGCTCCTAACCGGT 57.641 61.111 10.93 0.00 46.16 5.28
2578 9798 0.799393 TCGTGTCGCTCTTCTCTCTG 59.201 55.000 0.00 0.00 0.00 3.35
2594 9814 7.705325 GTGTGTTCATATAGGAGTATTGTTCGT 59.295 37.037 0.00 0.00 0.00 3.85
2613 9833 1.131504 TGTTGCCTTCGTTGTGTGTTC 59.868 47.619 0.00 0.00 0.00 3.18
2660 9884 3.461773 GGCGTGCAGAGGAGGCTA 61.462 66.667 3.44 0.00 0.00 3.93
2662 9886 4.479993 ATGGCGTGCAGAGGAGGC 62.480 66.667 0.00 0.00 0.00 4.70
2663 9887 2.513204 CATGGCGTGCAGAGGAGG 60.513 66.667 0.00 0.00 0.00 4.30
2665 9889 4.783621 GCCATGGCGTGCAGAGGA 62.784 66.667 23.48 0.00 0.00 3.71
2782 10013 4.621034 GGCAAAATTAATCAACTGACCGTG 59.379 41.667 0.00 0.00 0.00 4.94
2783 10014 4.279671 TGGCAAAATTAATCAACTGACCGT 59.720 37.500 0.00 0.00 0.00 4.83
2784 10015 4.804108 TGGCAAAATTAATCAACTGACCG 58.196 39.130 0.00 0.00 0.00 4.79
2832 10071 0.824109 TGAGTTCCGGATCATTCGCT 59.176 50.000 14.83 0.86 0.00 4.93
2836 10075 3.325135 GGGAGTATGAGTTCCGGATCATT 59.675 47.826 22.34 8.56 37.36 2.57
2843 10082 0.669077 CGGAGGGAGTATGAGTTCCG 59.331 60.000 0.00 0.00 41.15 4.30
2858 10097 1.730612 GCGAAGTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
2859 10098 1.070445 TGCGAAGTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
2860 10099 1.515081 TGCGAAGTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
2861 10100 3.000727 AGATGCGAAGTAAAAAGGACCG 58.999 45.455 0.00 0.00 0.00 4.79
2862 10101 5.873164 TCTTAGATGCGAAGTAAAAAGGACC 59.127 40.000 0.00 0.00 0.00 4.46
2863 10102 6.963049 TCTTAGATGCGAAGTAAAAAGGAC 57.037 37.500 0.00 0.00 0.00 3.85
2864 10103 8.450964 CAAATCTTAGATGCGAAGTAAAAAGGA 58.549 33.333 0.00 0.00 0.00 3.36
2865 10104 8.237267 ACAAATCTTAGATGCGAAGTAAAAAGG 58.763 33.333 0.00 0.00 0.00 3.11
2866 10105 9.267096 GACAAATCTTAGATGCGAAGTAAAAAG 57.733 33.333 0.00 0.00 0.00 2.27
2867 10106 8.999431 AGACAAATCTTAGATGCGAAGTAAAAA 58.001 29.630 0.00 0.00 0.00 1.94
2868 10107 8.443160 CAGACAAATCTTAGATGCGAAGTAAAA 58.557 33.333 0.00 0.00 30.42 1.52
2869 10108 7.817478 TCAGACAAATCTTAGATGCGAAGTAAA 59.183 33.333 0.00 0.00 30.42 2.01
2870 10109 7.320399 TCAGACAAATCTTAGATGCGAAGTAA 58.680 34.615 0.00 0.00 30.42 2.24
2871 10110 6.863275 TCAGACAAATCTTAGATGCGAAGTA 58.137 36.000 0.00 0.00 30.42 2.24
2872 10111 5.724328 TCAGACAAATCTTAGATGCGAAGT 58.276 37.500 0.00 0.00 30.42 3.01
2873 10112 6.312426 ACTTCAGACAAATCTTAGATGCGAAG 59.688 38.462 0.00 5.10 30.42 3.79
2874 10113 6.166279 ACTTCAGACAAATCTTAGATGCGAA 58.834 36.000 0.00 0.00 30.42 4.70
2875 10114 5.724328 ACTTCAGACAAATCTTAGATGCGA 58.276 37.500 0.00 0.00 30.42 5.10
2876 10115 5.578336 TGACTTCAGACAAATCTTAGATGCG 59.422 40.000 0.00 0.00 30.42 4.73
2877 10116 6.974932 TGACTTCAGACAAATCTTAGATGC 57.025 37.500 0.00 0.00 30.42 3.91
2878 10117 8.997323 AGTTTGACTTCAGACAAATCTTAGATG 58.003 33.333 7.54 0.00 40.50 2.90
2879 10118 9.566432 AAGTTTGACTTCAGACAAATCTTAGAT 57.434 29.630 7.54 0.00 40.50 1.98
2880 10119 8.964476 AAGTTTGACTTCAGACAAATCTTAGA 57.036 30.769 7.54 0.00 40.50 2.10
2882 10121 9.832445 ACTAAGTTTGACTTCAGACAAATCTTA 57.168 29.630 7.54 13.01 40.50 2.10
2883 10122 8.738645 ACTAAGTTTGACTTCAGACAAATCTT 57.261 30.769 7.54 12.70 40.50 2.40
2884 10123 7.987458 TGACTAAGTTTGACTTCAGACAAATCT 59.013 33.333 7.54 5.02 40.50 2.40
2885 10124 8.142994 TGACTAAGTTTGACTTCAGACAAATC 57.857 34.615 7.54 2.82 40.50 2.17
2886 10125 8.506168 TTGACTAAGTTTGACTTCAGACAAAT 57.494 30.769 7.54 0.00 40.50 2.32
2887 10126 7.915293 TTGACTAAGTTTGACTTCAGACAAA 57.085 32.000 3.03 1.04 39.51 2.83
2888 10127 8.506168 AATTGACTAAGTTTGACTTCAGACAA 57.494 30.769 3.03 6.98 39.51 3.18
2889 10128 8.506168 AAATTGACTAAGTTTGACTTCAGACA 57.494 30.769 3.03 0.00 39.51 3.41
3039 10278 9.161629 CAAACTTCCTAAAATTTGACCAACTTT 57.838 29.630 0.00 0.00 34.62 2.66
3040 10279 8.536175 TCAAACTTCCTAAAATTTGACCAACTT 58.464 29.630 0.00 0.00 36.42 2.66
3041 10280 8.073467 TCAAACTTCCTAAAATTTGACCAACT 57.927 30.769 0.00 0.00 36.42 3.16
3047 10286 7.068103 TCTGCAGTCAAACTTCCTAAAATTTGA 59.932 33.333 14.67 0.00 38.42 2.69
3048 10287 7.168135 GTCTGCAGTCAAACTTCCTAAAATTTG 59.832 37.037 14.67 0.00 34.11 2.32
3049 10288 7.147915 TGTCTGCAGTCAAACTTCCTAAAATTT 60.148 33.333 14.67 0.00 0.00 1.82
3050 10289 6.321181 TGTCTGCAGTCAAACTTCCTAAAATT 59.679 34.615 14.67 0.00 0.00 1.82
3051 10290 5.827797 TGTCTGCAGTCAAACTTCCTAAAAT 59.172 36.000 14.67 0.00 0.00 1.82
3052 10291 5.189928 TGTCTGCAGTCAAACTTCCTAAAA 58.810 37.500 14.67 0.00 0.00 1.52
3053 10292 4.776349 TGTCTGCAGTCAAACTTCCTAAA 58.224 39.130 14.67 0.00 0.00 1.85
3054 10293 4.415881 TGTCTGCAGTCAAACTTCCTAA 57.584 40.909 14.67 0.00 0.00 2.69
3055 10294 4.415881 TTGTCTGCAGTCAAACTTCCTA 57.584 40.909 21.59 0.00 0.00 2.94
3056 10295 3.281727 TTGTCTGCAGTCAAACTTCCT 57.718 42.857 21.59 0.00 0.00 3.36
3057 10296 4.540824 GATTTGTCTGCAGTCAAACTTCC 58.459 43.478 31.87 20.42 36.30 3.46
3058 10297 4.276926 AGGATTTGTCTGCAGTCAAACTTC 59.723 41.667 31.87 26.29 36.30 3.01
3059 10298 4.210331 AGGATTTGTCTGCAGTCAAACTT 58.790 39.130 31.87 21.57 36.30 2.66
3060 10299 3.825328 AGGATTTGTCTGCAGTCAAACT 58.175 40.909 31.87 24.33 36.30 2.66
3061 10300 5.886960 ATAGGATTTGTCTGCAGTCAAAC 57.113 39.130 31.87 25.08 36.30 2.93
3062 10301 7.112122 ACATATAGGATTTGTCTGCAGTCAAA 58.888 34.615 31.51 31.51 37.44 2.69
3063 10302 6.653020 ACATATAGGATTTGTCTGCAGTCAA 58.347 36.000 20.29 20.29 0.00 3.18
3064 10303 6.239217 ACATATAGGATTTGTCTGCAGTCA 57.761 37.500 14.67 12.07 0.00 3.41
3065 10304 8.552034 GTTTACATATAGGATTTGTCTGCAGTC 58.448 37.037 14.67 9.06 0.00 3.51
3066 10305 8.267894 AGTTTACATATAGGATTTGTCTGCAGT 58.732 33.333 14.67 0.00 0.00 4.40
3067 10306 8.668510 AGTTTACATATAGGATTTGTCTGCAG 57.331 34.615 7.63 7.63 0.00 4.41
3077 10316 9.774413 CGGTCCTTTTTAGTTTACATATAGGAT 57.226 33.333 0.00 0.00 32.42 3.24
3078 10317 8.206189 CCGGTCCTTTTTAGTTTACATATAGGA 58.794 37.037 0.00 0.00 0.00 2.94
3079 10318 8.206189 TCCGGTCCTTTTTAGTTTACATATAGG 58.794 37.037 0.00 0.00 0.00 2.57
3080 10319 9.257651 CTCCGGTCCTTTTTAGTTTACATATAG 57.742 37.037 0.00 0.00 0.00 1.31
3081 10320 8.206189 CCTCCGGTCCTTTTTAGTTTACATATA 58.794 37.037 0.00 0.00 0.00 0.86
3082 10321 7.052248 CCTCCGGTCCTTTTTAGTTTACATAT 58.948 38.462 0.00 0.00 0.00 1.78
3083 10322 6.408869 CCTCCGGTCCTTTTTAGTTTACATA 58.591 40.000 0.00 0.00 0.00 2.29
3084 10323 5.250982 CCTCCGGTCCTTTTTAGTTTACAT 58.749 41.667 0.00 0.00 0.00 2.29
3085 10324 4.505390 CCCTCCGGTCCTTTTTAGTTTACA 60.505 45.833 0.00 0.00 0.00 2.41
3086 10325 4.005650 CCCTCCGGTCCTTTTTAGTTTAC 58.994 47.826 0.00 0.00 0.00 2.01
3087 10326 3.909364 TCCCTCCGGTCCTTTTTAGTTTA 59.091 43.478 0.00 0.00 0.00 2.01
3088 10327 2.712627 TCCCTCCGGTCCTTTTTAGTTT 59.287 45.455 0.00 0.00 0.00 2.66
3089 10328 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
3090 10329 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
3091 10330 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
3092 10331 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
3093 10332 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
3094 10333 2.034436 TTACTCCCTCCGGTCCTTTT 57.966 50.000 0.00 0.00 0.00 2.27
3095 10334 2.265526 ATTACTCCCTCCGGTCCTTT 57.734 50.000 0.00 0.00 0.00 3.11
3096 10335 3.632420 ATATTACTCCCTCCGGTCCTT 57.368 47.619 0.00 0.00 0.00 3.36
3097 10336 3.632420 AATATTACTCCCTCCGGTCCT 57.368 47.619 0.00 0.00 0.00 3.85
3098 10337 4.701651 AAAATATTACTCCCTCCGGTCC 57.298 45.455 0.00 0.00 0.00 4.46
3099 10338 5.545588 GGTAAAATATTACTCCCTCCGGTC 58.454 45.833 0.00 0.00 41.01 4.79
3100 10339 4.039609 CGGTAAAATATTACTCCCTCCGGT 59.960 45.833 0.00 0.00 41.01 5.28
3101 10340 4.039609 ACGGTAAAATATTACTCCCTCCGG 59.960 45.833 0.00 0.00 41.01 5.14
3102 10341 5.205759 ACGGTAAAATATTACTCCCTCCG 57.794 43.478 0.00 0.00 41.01 4.63
3103 10342 7.870509 AAAACGGTAAAATATTACTCCCTCC 57.129 36.000 0.00 0.00 41.01 4.30
3104 10343 8.733458 ACAAAAACGGTAAAATATTACTCCCTC 58.267 33.333 0.00 0.00 41.01 4.30
3105 10344 8.640063 ACAAAAACGGTAAAATATTACTCCCT 57.360 30.769 0.00 0.00 41.01 4.20
3106 10345 9.695526 AAACAAAAACGGTAAAATATTACTCCC 57.304 29.630 0.00 0.00 41.01 4.30
3168 10409 4.752879 TAGCACTTCGCCGGCACC 62.753 66.667 28.98 7.06 44.04 5.01
3194 10435 1.291877 CTCGGTGCAGTTCGGGAAAG 61.292 60.000 0.00 0.00 0.00 2.62
3214 10455 0.445436 CAGAACATCTTGCACCGCTC 59.555 55.000 0.00 0.00 0.00 5.03
3304 10545 1.148157 CTCGATCGCTTCAACGGCAT 61.148 55.000 11.09 0.00 0.00 4.40
3331 10572 5.300969 TGCTTATTGTCATCTTTCACTGC 57.699 39.130 0.00 0.00 0.00 4.40
3382 10629 7.999450 AATAGGGACACCGTTAACAAATAAA 57.001 32.000 6.39 0.00 43.47 1.40
3396 10717 5.353394 TGACAGGTCATAAATAGGGACAC 57.647 43.478 0.00 0.00 34.14 3.67
3490 10812 5.206299 GTGTCTCAAGATATACGGAACTCG 58.794 45.833 0.00 0.00 45.88 4.18
3629 10957 4.616181 ATTAACGTCATTGCCTACTTGC 57.384 40.909 0.00 0.00 0.00 4.01
3754 11206 4.324267 CCGACATCTTTTTGTACTCCCTT 58.676 43.478 0.00 0.00 0.00 3.95
3767 11219 1.566703 TCTCTCTCTCCCCGACATCTT 59.433 52.381 0.00 0.00 0.00 2.40
3768 11220 1.142870 CTCTCTCTCTCCCCGACATCT 59.857 57.143 0.00 0.00 0.00 2.90
3769 11221 1.142060 TCTCTCTCTCTCCCCGACATC 59.858 57.143 0.00 0.00 0.00 3.06
3770 11222 1.142870 CTCTCTCTCTCTCCCCGACAT 59.857 57.143 0.00 0.00 0.00 3.06
3771 11223 0.544223 CTCTCTCTCTCTCCCCGACA 59.456 60.000 0.00 0.00 0.00 4.35
3773 11225 1.128200 CTCTCTCTCTCTCTCCCCGA 58.872 60.000 0.00 0.00 0.00 5.14
3774 11226 0.108585 CCTCTCTCTCTCTCTCCCCG 59.891 65.000 0.00 0.00 0.00 5.73
3776 11228 2.127708 AGTCCTCTCTCTCTCTCTCCC 58.872 57.143 0.00 0.00 0.00 4.30
3844 11356 0.322187 GGGACCACGTTAGCAACCAT 60.322 55.000 0.00 0.00 0.00 3.55
3893 11408 9.457436 CCTTGAGGCTAAAGGTTATACTTTTTA 57.543 33.333 21.08 0.00 40.82 1.52
3953 11469 5.220521 TGATATGTGGTGGATAGGGTTACA 58.779 41.667 0.00 0.00 0.00 2.41
3962 11478 6.189859 ACATTGAGTTTGATATGTGGTGGAT 58.810 36.000 0.00 0.00 30.51 3.41
3971 11487 7.177216 ACATGGTGTCAACATTGAGTTTGATAT 59.823 33.333 0.00 0.00 38.74 1.63
3972 11488 6.489700 ACATGGTGTCAACATTGAGTTTGATA 59.510 34.615 0.00 0.00 38.74 2.15
4008 11524 4.511527 TCATCAGAAGAACATTCTGCCTC 58.488 43.478 11.80 0.00 44.08 4.70
4037 11553 1.666011 TCGCTATCGAGGGGAATGC 59.334 57.895 5.67 0.00 40.21 3.56
4124 11641 1.136000 CACACACACACACACACACTG 60.136 52.381 0.00 0.00 0.00 3.66
4125 11642 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
4129 11646 0.250510 ACACCACACACACACACACA 60.251 50.000 0.00 0.00 0.00 3.72
4131 11648 0.957888 CCACACCACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
4133 11650 2.043405 GCCACACCACACACACACA 61.043 57.895 0.00 0.00 0.00 3.72
4135 11652 0.682532 ATTGCCACACCACACACACA 60.683 50.000 0.00 0.00 0.00 3.72
4145 11662 0.521291 ATGCGTGTACATTGCCACAC 59.479 50.000 17.26 10.59 41.31 3.82
4146 11663 0.520847 CATGCGTGTACATTGCCACA 59.479 50.000 17.26 3.15 0.00 4.17
4181 11698 7.895975 ACCTTATTTTAGAAACACCGAGTAC 57.104 36.000 0.00 0.00 0.00 2.73
4186 11703 6.563222 TGGAACCTTATTTTAGAAACACCG 57.437 37.500 0.00 0.00 0.00 4.94
4232 11750 4.113354 GTGAAGTAACTAATCCTCGCCTG 58.887 47.826 0.00 0.00 0.00 4.85
4234 11752 3.455327 GGTGAAGTAACTAATCCTCGCC 58.545 50.000 0.00 0.00 0.00 5.54
4240 11758 6.790285 TTGAAACCGGTGAAGTAACTAATC 57.210 37.500 8.52 0.00 0.00 1.75
4242 11760 6.998968 TTTTGAAACCGGTGAAGTAACTAA 57.001 33.333 8.52 0.00 0.00 2.24
4248 11766 4.827284 AGATGATTTTGAAACCGGTGAAGT 59.173 37.500 8.52 0.00 0.00 3.01
4255 11773 9.793252 ATCAATTCTAAGATGATTTTGAAACCG 57.207 29.630 0.00 0.00 29.77 4.44
4285 11807 6.647212 TCTCAACTGATACGCAAACATAAG 57.353 37.500 0.00 0.00 0.00 1.73
4383 11905 2.489528 ATGGGACGGAGGGAATAAGA 57.510 50.000 0.00 0.00 0.00 2.10
4384 11906 4.910458 ATTATGGGACGGAGGGAATAAG 57.090 45.455 0.00 0.00 0.00 1.73
4390 11912 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
4391 11913 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
4392 11914 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
4393 11915 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
4394 11916 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
4440 11962 9.712305 CCTCCGTCTCATAATATAAGAACATTT 57.288 33.333 0.00 0.00 0.00 2.32
4441 11963 8.314751 CCCTCCGTCTCATAATATAAGAACATT 58.685 37.037 0.00 0.00 0.00 2.71
4442 11964 7.674348 TCCCTCCGTCTCATAATATAAGAACAT 59.326 37.037 0.00 0.00 0.00 2.71
4443 11965 7.008332 TCCCTCCGTCTCATAATATAAGAACA 58.992 38.462 0.00 0.00 0.00 3.18
4444 11966 7.177041 ACTCCCTCCGTCTCATAATATAAGAAC 59.823 40.741 0.00 0.00 0.00 3.01
4445 11967 7.239438 ACTCCCTCCGTCTCATAATATAAGAA 58.761 38.462 0.00 0.00 0.00 2.52
4446 11968 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
4447 11969 8.754991 ATACTCCCTCCGTCTCATAATATAAG 57.245 38.462 0.00 0.00 0.00 1.73
4448 11970 9.543231 AAATACTCCCTCCGTCTCATAATATAA 57.457 33.333 0.00 0.00 0.00 0.98
4449 11971 9.543231 AAAATACTCCCTCCGTCTCATAATATA 57.457 33.333 0.00 0.00 0.00 0.86
4450 11972 8.437274 AAAATACTCCCTCCGTCTCATAATAT 57.563 34.615 0.00 0.00 0.00 1.28
4451 11973 7.850935 AAAATACTCCCTCCGTCTCATAATA 57.149 36.000 0.00 0.00 0.00 0.98
4452 11974 6.749036 AAAATACTCCCTCCGTCTCATAAT 57.251 37.500 0.00 0.00 0.00 1.28
4453 11975 6.155565 TGAAAAATACTCCCTCCGTCTCATAA 59.844 38.462 0.00 0.00 0.00 1.90
4454 11976 5.659525 TGAAAAATACTCCCTCCGTCTCATA 59.340 40.000 0.00 0.00 0.00 2.15
4455 11977 4.469945 TGAAAAATACTCCCTCCGTCTCAT 59.530 41.667 0.00 0.00 0.00 2.90
4456 11978 3.835978 TGAAAAATACTCCCTCCGTCTCA 59.164 43.478 0.00 0.00 0.00 3.27
4457 11979 4.467198 TGAAAAATACTCCCTCCGTCTC 57.533 45.455 0.00 0.00 0.00 3.36
4458 11980 6.555463 TTATGAAAAATACTCCCTCCGTCT 57.445 37.500 0.00 0.00 0.00 4.18
4459 11981 7.120138 TGTTTTATGAAAAATACTCCCTCCGTC 59.880 37.037 0.00 0.00 36.96 4.79
4460 11982 6.943718 TGTTTTATGAAAAATACTCCCTCCGT 59.056 34.615 0.00 0.00 36.96 4.69
4461 11983 7.385778 TGTTTTATGAAAAATACTCCCTCCG 57.614 36.000 0.00 0.00 36.96 4.63
4462 11984 9.020731 TCTTGTTTTATGAAAAATACTCCCTCC 57.979 33.333 0.00 0.00 36.96 4.30
4511 12033 8.989980 GCCTATTCTTTAATACGATATATGGCC 58.010 37.037 0.00 0.00 0.00 5.36
4512 12034 8.989980 GGCCTATTCTTTAATACGATATATGGC 58.010 37.037 0.00 0.00 30.94 4.40
4518 12040 9.616156 TGTTTTGGCCTATTCTTTAATACGATA 57.384 29.630 3.32 0.00 0.00 2.92
4519 12041 8.514330 TGTTTTGGCCTATTCTTTAATACGAT 57.486 30.769 3.32 0.00 0.00 3.73
4520 12042 7.925043 TGTTTTGGCCTATTCTTTAATACGA 57.075 32.000 3.32 0.00 0.00 3.43
4521 12043 8.973835 TTTGTTTTGGCCTATTCTTTAATACG 57.026 30.769 3.32 0.00 0.00 3.06
4524 12046 9.791801 ATGTTTTGTTTTGGCCTATTCTTTAAT 57.208 25.926 3.32 0.00 0.00 1.40
4526 12048 9.699703 GTATGTTTTGTTTTGGCCTATTCTTTA 57.300 29.630 3.32 0.00 0.00 1.85
4527 12049 8.428852 AGTATGTTTTGTTTTGGCCTATTCTTT 58.571 29.630 3.32 0.00 0.00 2.52
4528 12050 7.962441 AGTATGTTTTGTTTTGGCCTATTCTT 58.038 30.769 3.32 0.00 0.00 2.52
4529 12051 7.539034 AGTATGTTTTGTTTTGGCCTATTCT 57.461 32.000 3.32 0.00 0.00 2.40
4530 12052 8.520351 AGTAGTATGTTTTGTTTTGGCCTATTC 58.480 33.333 3.32 0.00 0.00 1.75
4531 12053 8.303876 CAGTAGTATGTTTTGTTTTGGCCTATT 58.696 33.333 3.32 0.00 0.00 1.73
4532 12054 7.450323 ACAGTAGTATGTTTTGTTTTGGCCTAT 59.550 33.333 3.32 0.00 0.00 2.57
4533 12055 6.773685 ACAGTAGTATGTTTTGTTTTGGCCTA 59.226 34.615 3.32 0.00 0.00 3.93
4534 12056 5.596772 ACAGTAGTATGTTTTGTTTTGGCCT 59.403 36.000 3.32 0.00 0.00 5.19
4535 12057 5.838529 ACAGTAGTATGTTTTGTTTTGGCC 58.161 37.500 0.00 0.00 0.00 5.36
4536 12058 8.293867 TGATACAGTAGTATGTTTTGTTTTGGC 58.706 33.333 0.00 0.00 40.95 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.