Multiple sequence alignment - TraesCS3B01G079000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G079000 chr3B 100.000 3033 0 0 1 3033 49868553 49865521 0.000000e+00 5602.0
1 TraesCS3B01G079000 chr3B 91.318 1290 74 11 980 2265 50020865 50022120 0.000000e+00 1727.0
2 TraesCS3B01G079000 chr3B 89.769 694 29 15 2344 3033 50022198 50022853 0.000000e+00 850.0
3 TraesCS3B01G079000 chr3B 82.258 496 59 13 2 475 642470741 642470253 4.710000e-108 401.0
4 TraesCS3B01G079000 chr3B 77.454 652 124 14 1334 1966 14223197 14222550 4.780000e-98 368.0
5 TraesCS3B01G079000 chr3B 88.679 106 8 4 875 978 50020691 50020794 3.170000e-25 126.0
6 TraesCS3B01G079000 chr3D 89.784 1204 81 18 980 2175 29309133 29307964 0.000000e+00 1504.0
7 TraesCS3B01G079000 chr3D 88.553 1258 101 15 904 2145 29281641 29282871 0.000000e+00 1485.0
8 TraesCS3B01G079000 chr3D 78.006 1073 178 36 982 2025 5609152 5610195 3.320000e-174 621.0
9 TraesCS3B01G079000 chr3D 87.381 420 31 15 2629 3033 29307387 29306975 2.130000e-126 462.0
10 TraesCS3B01G079000 chr3D 84.567 473 45 14 7 460 438059231 438059694 7.720000e-121 444.0
11 TraesCS3B01G079000 chr3D 90.698 86 8 0 1148 1233 5681221 5681136 6.870000e-22 115.0
12 TraesCS3B01G079000 chr3A 91.978 910 47 9 1291 2175 38621946 38622854 0.000000e+00 1253.0
13 TraesCS3B01G079000 chr3A 78.947 1064 174 32 982 2022 17258496 17257460 0.000000e+00 678.0
14 TraesCS3B01G079000 chr3A 78.451 1072 172 38 982 2021 15780799 15779755 0.000000e+00 645.0
15 TraesCS3B01G079000 chr3A 78.863 1003 160 31 982 1966 15695265 15694297 5.520000e-177 630.0
16 TraesCS3B01G079000 chr3A 88.930 271 27 1 980 1247 38621180 38621450 6.270000e-87 331.0
17 TraesCS3B01G079000 chr3A 83.412 211 24 4 481 680 38620619 38620829 5.160000e-43 185.0
18 TraesCS3B01G079000 chr7D 93.277 476 19 6 1 466 600509996 600510468 0.000000e+00 689.0
19 TraesCS3B01G079000 chrUn 77.716 1077 180 27 982 2024 35452338 35451288 3.340000e-169 604.0
20 TraesCS3B01G079000 chrUn 88.268 179 12 3 2656 2826 38702130 38701953 3.960000e-49 206.0
21 TraesCS3B01G079000 chrUn 87.778 180 12 4 2656 2826 271978364 271978542 5.130000e-48 202.0
22 TraesCS3B01G079000 chrUn 87.778 180 12 4 2656 2826 271986436 271986614 5.130000e-48 202.0
23 TraesCS3B01G079000 chrUn 87.778 180 12 4 2656 2826 291869834 291869656 5.130000e-48 202.0
24 TraesCS3B01G079000 chrUn 91.429 105 1 3 2235 2338 271978167 271978264 1.470000e-28 137.0
25 TraesCS3B01G079000 chrUn 91.429 105 1 3 2235 2338 271986239 271986336 1.470000e-28 137.0
26 TraesCS3B01G079000 chrUn 91.429 105 1 3 2235 2338 291870031 291869934 1.470000e-28 137.0
27 TraesCS3B01G079000 chrUn 90.476 105 2 3 2235 2338 38702327 38702230 6.820000e-27 132.0
28 TraesCS3B01G079000 chrUn 96.364 55 2 0 2850 2904 38701959 38701905 1.160000e-14 91.6
29 TraesCS3B01G079000 chr2D 84.274 496 53 19 1 475 616985673 616985182 7.660000e-126 460.0
30 TraesCS3B01G079000 chr7A 84.265 483 52 15 1 466 576070075 576070550 1.660000e-122 449.0
31 TraesCS3B01G079000 chr7A 83.401 494 54 16 1 475 658978890 658978406 1.670000e-117 433.0
32 TraesCS3B01G079000 chr5D 83.711 485 51 16 3 466 480152702 480153179 1.670000e-117 433.0
33 TraesCS3B01G079000 chr1A 83.299 485 56 13 2 466 35133859 35134338 1.010000e-114 424.0
34 TraesCS3B01G079000 chr4A 82.114 492 58 19 7 475 675599384 675598900 7.880000e-106 394.0
35 TraesCS3B01G079000 chr5B 92.568 148 8 2 2681 2826 638320875 638320729 3.060000e-50 209.0
36 TraesCS3B01G079000 chr5B 87.619 105 5 3 2235 2338 638321077 638320980 6.870000e-22 115.0
37 TraesCS3B01G079000 chr5B 92.727 55 4 0 2850 2904 638320735 638320681 2.510000e-11 80.5
38 TraesCS3B01G079000 chr4B 92.568 148 8 2 2681 2826 84510729 84510583 3.060000e-50 209.0
39 TraesCS3B01G079000 chr4B 89.524 105 3 3 2235 2338 84510932 84510835 3.170000e-25 126.0
40 TraesCS3B01G079000 chr4B 96.364 55 2 0 2850 2904 84510589 84510535 1.160000e-14 91.6
41 TraesCS3B01G079000 chr2B 88.268 179 12 3 2656 2826 493444931 493444754 3.960000e-49 206.0
42 TraesCS3B01G079000 chr2B 92.381 105 0 4 2235 2338 493445128 493445031 3.150000e-30 143.0
43 TraesCS3B01G079000 chr6B 90.476 105 2 3 2235 2338 569316642 569316545 6.820000e-27 132.0
44 TraesCS3B01G079000 chr7B 94.872 78 3 1 2262 2338 694991334 694991257 1.480000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G079000 chr3B 49865521 49868553 3032 True 5602.000000 5602 100.000000 1 3033 1 chr3B.!!$R2 3032
1 TraesCS3B01G079000 chr3B 50020691 50022853 2162 False 901.000000 1727 89.922000 875 3033 3 chr3B.!!$F1 2158
2 TraesCS3B01G079000 chr3B 14222550 14223197 647 True 368.000000 368 77.454000 1334 1966 1 chr3B.!!$R1 632
3 TraesCS3B01G079000 chr3D 29281641 29282871 1230 False 1485.000000 1485 88.553000 904 2145 1 chr3D.!!$F2 1241
4 TraesCS3B01G079000 chr3D 29306975 29309133 2158 True 983.000000 1504 88.582500 980 3033 2 chr3D.!!$R2 2053
5 TraesCS3B01G079000 chr3D 5609152 5610195 1043 False 621.000000 621 78.006000 982 2025 1 chr3D.!!$F1 1043
6 TraesCS3B01G079000 chr3A 17257460 17258496 1036 True 678.000000 678 78.947000 982 2022 1 chr3A.!!$R3 1040
7 TraesCS3B01G079000 chr3A 15779755 15780799 1044 True 645.000000 645 78.451000 982 2021 1 chr3A.!!$R2 1039
8 TraesCS3B01G079000 chr3A 15694297 15695265 968 True 630.000000 630 78.863000 982 1966 1 chr3A.!!$R1 984
9 TraesCS3B01G079000 chr3A 38620619 38622854 2235 False 589.666667 1253 88.106667 481 2175 3 chr3A.!!$F1 1694
10 TraesCS3B01G079000 chrUn 35451288 35452338 1050 True 604.000000 604 77.716000 982 2024 1 chrUn.!!$R1 1042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.039035 TGGCATTGGTACCACCCTTC 59.961 55.0 16.04 4.35 37.5 3.46 F
953 1016 0.042131 TTCCTCGCTCCCTTCCCTTA 59.958 55.0 0.00 0.00 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1254 1873 0.032130 ATCGATCGACCGGATTGTGG 59.968 55.0 22.06 0.0 37.72 4.17 R
2401 3168 0.112995 ATGGTCAAGAAAGCTGCCCA 59.887 50.0 0.00 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.109320 ACACACAAGTTTGCATTGAAATTG 57.891 33.333 5.55 6.86 0.00 2.32
24 25 4.965158 CACACAAGTTTGCATTGAAATTGC 59.035 37.500 9.13 0.00 0.00 3.56
25 26 4.634883 ACACAAGTTTGCATTGAAATTGCA 59.365 33.333 9.13 0.00 36.72 4.08
26 27 4.965158 CACAAGTTTGCATTGAAATTGCAC 59.035 37.500 9.13 0.00 38.37 4.57
27 28 4.877251 ACAAGTTTGCATTGAAATTGCACT 59.123 33.333 9.13 0.00 38.37 4.40
28 29 5.354792 ACAAGTTTGCATTGAAATTGCACTT 59.645 32.000 9.13 0.00 38.37 3.16
29 30 6.127952 ACAAGTTTGCATTGAAATTGCACTTT 60.128 30.769 9.13 1.08 38.37 2.66
30 31 6.439675 AGTTTGCATTGAAATTGCACTTTT 57.560 29.167 3.32 0.00 38.37 2.27
31 32 7.551035 AGTTTGCATTGAAATTGCACTTTTA 57.449 28.000 3.32 0.00 38.37 1.52
32 33 7.632721 AGTTTGCATTGAAATTGCACTTTTAG 58.367 30.769 3.32 0.00 38.37 1.85
33 34 7.280652 AGTTTGCATTGAAATTGCACTTTTAGT 59.719 29.630 3.32 0.00 38.37 2.24
34 35 8.547069 GTTTGCATTGAAATTGCACTTTTAGTA 58.453 29.630 3.32 0.00 38.37 1.82
35 36 8.654230 TTGCATTGAAATTGCACTTTTAGTAA 57.346 26.923 3.32 0.00 38.37 2.24
36 37 8.830201 TGCATTGAAATTGCACTTTTAGTAAT 57.170 26.923 3.32 1.29 33.24 1.89
37 38 9.920133 TGCATTGAAATTGCACTTTTAGTAATA 57.080 25.926 3.32 0.00 33.24 0.98
41 42 9.920133 TTGAAATTGCACTTTTAGTAATATGCA 57.080 25.926 3.32 10.55 41.08 3.96
47 48 8.755696 TGCACTTTTAGTAATATGCAAAAAGG 57.244 30.769 17.36 10.11 39.94 3.11
48 49 8.580720 TGCACTTTTAGTAATATGCAAAAAGGA 58.419 29.630 17.36 3.61 39.94 3.36
49 50 9.418045 GCACTTTTAGTAATATGCAAAAAGGAA 57.582 29.630 17.36 0.00 40.03 3.36
64 65 9.941325 TGCAAAAAGGAACATATGATATTGTTT 57.059 25.926 10.38 0.55 36.25 2.83
67 68 9.941325 AAAAAGGAACATATGATATTGTTTGCA 57.059 25.926 10.38 0.00 36.25 4.08
68 69 8.931385 AAAGGAACATATGATATTGTTTGCAC 57.069 30.769 10.38 0.00 36.25 4.57
69 70 7.886629 AGGAACATATGATATTGTTTGCACT 57.113 32.000 10.38 0.00 36.25 4.40
70 71 7.934457 AGGAACATATGATATTGTTTGCACTC 58.066 34.615 10.38 0.00 36.25 3.51
71 72 7.776969 AGGAACATATGATATTGTTTGCACTCT 59.223 33.333 10.38 0.00 36.25 3.24
72 73 9.056005 GGAACATATGATATTGTTTGCACTCTA 57.944 33.333 10.38 0.00 36.25 2.43
73 74 9.869844 GAACATATGATATTGTTTGCACTCTAC 57.130 33.333 10.38 0.00 36.25 2.59
74 75 9.618890 AACATATGATATTGTTTGCACTCTACT 57.381 29.630 10.38 0.00 32.28 2.57
84 85 8.840833 TTGTTTGCACTCTACTATAATTCACA 57.159 30.769 0.00 0.00 0.00 3.58
85 86 8.251750 TGTTTGCACTCTACTATAATTCACAC 57.748 34.615 0.00 0.00 0.00 3.82
86 87 7.875554 TGTTTGCACTCTACTATAATTCACACA 59.124 33.333 0.00 0.00 0.00 3.72
87 88 7.827819 TTGCACTCTACTATAATTCACACAC 57.172 36.000 0.00 0.00 0.00 3.82
88 89 6.930731 TGCACTCTACTATAATTCACACACA 58.069 36.000 0.00 0.00 0.00 3.72
89 90 7.555965 TGCACTCTACTATAATTCACACACAT 58.444 34.615 0.00 0.00 0.00 3.21
90 91 7.492344 TGCACTCTACTATAATTCACACACATG 59.508 37.037 0.00 0.00 0.00 3.21
91 92 7.492669 GCACTCTACTATAATTCACACACATGT 59.507 37.037 0.00 0.00 40.80 3.21
92 93 9.371136 CACTCTACTATAATTCACACACATGTT 57.629 33.333 0.00 0.00 36.72 2.71
93 94 9.371136 ACTCTACTATAATTCACACACATGTTG 57.629 33.333 0.00 0.81 36.72 3.33
94 95 8.196802 TCTACTATAATTCACACACATGTTGC 57.803 34.615 0.00 0.00 36.72 4.17
95 96 6.816134 ACTATAATTCACACACATGTTGCA 57.184 33.333 0.00 0.00 36.72 4.08
96 97 7.395190 ACTATAATTCACACACATGTTGCAT 57.605 32.000 0.00 0.00 36.72 3.96
97 98 8.504812 ACTATAATTCACACACATGTTGCATA 57.495 30.769 0.00 0.00 36.72 3.14
98 99 8.615211 ACTATAATTCACACACATGTTGCATAG 58.385 33.333 0.00 1.54 36.72 2.23
99 100 5.710513 AATTCACACACATGTTGCATAGT 57.289 34.783 0.00 0.00 36.72 2.12
100 101 6.816134 AATTCACACACATGTTGCATAGTA 57.184 33.333 0.00 0.00 36.72 1.82
101 102 5.605564 TTCACACACATGTTGCATAGTAC 57.394 39.130 0.00 0.00 36.72 2.73
102 103 4.893608 TCACACACATGTTGCATAGTACT 58.106 39.130 0.00 0.00 36.72 2.73
103 104 5.304778 TCACACACATGTTGCATAGTACTT 58.695 37.500 0.00 0.00 36.72 2.24
104 105 5.179182 TCACACACATGTTGCATAGTACTTG 59.821 40.000 0.00 0.52 36.72 3.16
105 106 5.049474 CACACACATGTTGCATAGTACTTGT 60.049 40.000 0.00 2.80 36.72 3.16
106 107 5.049474 ACACACATGTTGCATAGTACTTGTG 60.049 40.000 23.35 23.35 46.96 3.33
107 108 5.611796 CACATGTTGCATAGTACTTGTGT 57.388 39.130 19.53 6.81 41.62 3.72
108 109 5.384787 CACATGTTGCATAGTACTTGTGTG 58.615 41.667 19.53 12.75 41.62 3.82
109 110 5.049474 CACATGTTGCATAGTACTTGTGTGT 60.049 40.000 19.53 0.00 41.62 3.72
110 111 6.147000 CACATGTTGCATAGTACTTGTGTGTA 59.853 38.462 19.53 0.00 41.62 2.90
111 112 6.878923 ACATGTTGCATAGTACTTGTGTGTAT 59.121 34.615 0.00 0.00 33.16 2.29
112 113 8.038351 ACATGTTGCATAGTACTTGTGTGTATA 58.962 33.333 0.00 0.00 33.16 1.47
113 114 7.821595 TGTTGCATAGTACTTGTGTGTATAC 57.178 36.000 0.00 0.00 0.00 1.47
114 115 7.608153 TGTTGCATAGTACTTGTGTGTATACT 58.392 34.615 0.00 0.00 0.00 2.12
115 116 8.092068 TGTTGCATAGTACTTGTGTGTATACTT 58.908 33.333 0.00 0.00 0.00 2.24
116 117 9.577110 GTTGCATAGTACTTGTGTGTATACTTA 57.423 33.333 0.00 0.00 0.00 2.24
168 169 8.515414 ACATTTTCTAAGAAAGAATGTAGTGGC 58.485 33.333 6.05 0.00 43.75 5.01
169 170 8.514594 CATTTTCTAAGAAAGAATGTAGTGGCA 58.485 33.333 0.00 0.00 43.75 4.92
170 171 8.635765 TTTTCTAAGAAAGAATGTAGTGGCAT 57.364 30.769 0.00 0.00 43.75 4.40
171 172 8.635765 TTTCTAAGAAAGAATGTAGTGGCATT 57.364 30.769 0.00 0.00 43.75 3.56
172 173 7.615582 TCTAAGAAAGAATGTAGTGGCATTG 57.384 36.000 0.00 0.00 38.98 2.82
173 174 5.649782 AAGAAAGAATGTAGTGGCATTGG 57.350 39.130 0.00 0.00 38.98 3.16
174 175 4.666512 AGAAAGAATGTAGTGGCATTGGT 58.333 39.130 0.00 0.00 38.98 3.67
175 176 5.815581 AGAAAGAATGTAGTGGCATTGGTA 58.184 37.500 0.00 0.00 38.98 3.25
176 177 5.648092 AGAAAGAATGTAGTGGCATTGGTAC 59.352 40.000 0.00 0.00 38.98 3.34
177 178 3.886123 AGAATGTAGTGGCATTGGTACC 58.114 45.455 4.43 4.43 38.98 3.34
178 179 3.265737 AGAATGTAGTGGCATTGGTACCA 59.734 43.478 11.60 11.60 38.98 3.25
182 183 3.930144 TGGCATTGGTACCACCCT 58.070 55.556 16.04 0.00 37.50 4.34
183 184 2.169106 TGGCATTGGTACCACCCTT 58.831 52.632 16.04 0.00 37.50 3.95
184 185 0.039035 TGGCATTGGTACCACCCTTC 59.961 55.000 16.04 4.35 37.50 3.46
185 186 0.039035 GGCATTGGTACCACCCTTCA 59.961 55.000 16.04 0.00 37.50 3.02
186 187 1.549037 GGCATTGGTACCACCCTTCAA 60.549 52.381 16.04 0.00 37.50 2.69
187 188 1.818674 GCATTGGTACCACCCTTCAAG 59.181 52.381 16.04 0.00 37.50 3.02
188 189 2.554344 GCATTGGTACCACCCTTCAAGA 60.554 50.000 16.04 0.00 37.50 3.02
189 190 3.761897 CATTGGTACCACCCTTCAAGAA 58.238 45.455 16.04 0.00 37.50 2.52
190 191 3.502123 TTGGTACCACCCTTCAAGAAG 57.498 47.619 16.04 2.83 37.50 2.85
191 192 2.696775 TGGTACCACCCTTCAAGAAGA 58.303 47.619 11.60 0.00 37.50 2.87
192 193 3.050089 TGGTACCACCCTTCAAGAAGAA 58.950 45.455 11.60 0.00 37.50 2.52
193 194 3.460340 TGGTACCACCCTTCAAGAAGAAA 59.540 43.478 11.60 0.00 37.50 2.52
194 195 4.105697 TGGTACCACCCTTCAAGAAGAAAT 59.894 41.667 11.60 0.00 37.50 2.17
195 196 5.311121 TGGTACCACCCTTCAAGAAGAAATA 59.689 40.000 11.60 0.00 37.50 1.40
196 197 6.183361 TGGTACCACCCTTCAAGAAGAAATAA 60.183 38.462 11.60 0.00 37.50 1.40
197 198 6.717997 GGTACCACCCTTCAAGAAGAAATAAA 59.282 38.462 7.15 0.00 40.79 1.40
198 199 7.396339 GGTACCACCCTTCAAGAAGAAATAAAT 59.604 37.037 7.15 0.00 40.79 1.40
199 200 9.457436 GTACCACCCTTCAAGAAGAAATAAATA 57.543 33.333 11.25 0.00 40.79 1.40
200 201 8.950007 ACCACCCTTCAAGAAGAAATAAATAA 57.050 30.769 11.25 0.00 40.79 1.40
201 202 9.374711 ACCACCCTTCAAGAAGAAATAAATAAA 57.625 29.630 11.25 0.00 40.79 1.40
245 246 8.893219 TTCCACAAATTTACACATAAATTGCA 57.107 26.923 5.93 0.00 45.98 4.08
246 247 8.531622 TCCACAAATTTACACATAAATTGCAG 57.468 30.769 5.93 3.41 45.98 4.41
247 248 8.147058 TCCACAAATTTACACATAAATTGCAGT 58.853 29.630 5.93 3.88 45.98 4.40
248 249 8.772705 CCACAAATTTACACATAAATTGCAGTT 58.227 29.630 5.93 0.00 45.98 3.16
325 326 8.630037 AGTTTAAAAGAAGGTTAGTGTCATTGG 58.370 33.333 0.00 0.00 0.00 3.16
326 327 8.410912 GTTTAAAAGAAGGTTAGTGTCATTGGT 58.589 33.333 0.00 0.00 0.00 3.67
327 328 9.629878 TTTAAAAGAAGGTTAGTGTCATTGGTA 57.370 29.630 0.00 0.00 0.00 3.25
328 329 9.802039 TTAAAAGAAGGTTAGTGTCATTGGTAT 57.198 29.630 0.00 0.00 0.00 2.73
330 331 8.788325 AAAGAAGGTTAGTGTCATTGGTATAC 57.212 34.615 0.00 0.00 0.00 1.47
331 332 6.885922 AGAAGGTTAGTGTCATTGGTATACC 58.114 40.000 15.50 15.50 0.00 2.73
332 333 5.625568 AGGTTAGTGTCATTGGTATACCC 57.374 43.478 19.42 3.86 34.29 3.69
333 334 5.286221 AGGTTAGTGTCATTGGTATACCCT 58.714 41.667 19.42 9.33 34.29 4.34
334 335 5.729718 AGGTTAGTGTCATTGGTATACCCTT 59.270 40.000 19.42 3.65 34.29 3.95
335 336 6.904654 AGGTTAGTGTCATTGGTATACCCTTA 59.095 38.462 19.42 5.26 34.29 2.69
336 337 7.403813 AGGTTAGTGTCATTGGTATACCCTTAA 59.596 37.037 19.42 7.51 34.29 1.85
337 338 8.048514 GGTTAGTGTCATTGGTATACCCTTAAA 58.951 37.037 19.42 7.14 34.29 1.52
338 339 9.623000 GTTAGTGTCATTGGTATACCCTTAAAT 57.377 33.333 19.42 9.19 34.29 1.40
341 342 9.847224 AGTGTCATTGGTATACCCTTAAATTAG 57.153 33.333 19.42 2.32 34.29 1.73
342 343 9.841295 GTGTCATTGGTATACCCTTAAATTAGA 57.159 33.333 19.42 4.46 34.29 2.10
383 384 9.256715 GAAACTTAAAACAAAAATTTCCACACG 57.743 29.630 0.00 0.00 0.00 4.49
384 385 8.535690 AACTTAAAACAAAAATTTCCACACGA 57.464 26.923 0.00 0.00 0.00 4.35
385 386 8.710835 ACTTAAAACAAAAATTTCCACACGAT 57.289 26.923 0.00 0.00 0.00 3.73
386 387 9.157104 ACTTAAAACAAAAATTTCCACACGATT 57.843 25.926 0.00 0.00 0.00 3.34
389 390 8.710835 AAAACAAAAATTTCCACACGATTAGT 57.289 26.923 0.00 0.00 0.00 2.24
390 391 9.804758 AAAACAAAAATTTCCACACGATTAGTA 57.195 25.926 0.00 0.00 0.00 1.82
391 392 8.791355 AACAAAAATTTCCACACGATTAGTAC 57.209 30.769 0.00 0.00 0.00 2.73
392 393 7.932335 ACAAAAATTTCCACACGATTAGTACA 58.068 30.769 0.00 0.00 0.00 2.90
393 394 8.407064 ACAAAAATTTCCACACGATTAGTACAA 58.593 29.630 0.00 0.00 0.00 2.41
394 395 9.239002 CAAAAATTTCCACACGATTAGTACAAA 57.761 29.630 0.00 0.00 0.00 2.83
395 396 9.804758 AAAAATTTCCACACGATTAGTACAAAA 57.195 25.926 0.00 0.00 0.00 2.44
396 397 9.804758 AAAATTTCCACACGATTAGTACAAAAA 57.195 25.926 0.00 0.00 0.00 1.94
397 398 9.974980 AAATTTCCACACGATTAGTACAAAAAT 57.025 25.926 0.00 0.00 0.00 1.82
398 399 9.974980 AATTTCCACACGATTAGTACAAAAATT 57.025 25.926 0.00 0.00 0.00 1.82
399 400 8.789881 TTTCCACACGATTAGTACAAAAATTG 57.210 30.769 0.00 0.00 0.00 2.32
400 401 6.375377 TCCACACGATTAGTACAAAAATTGC 58.625 36.000 0.00 0.00 0.00 3.56
401 402 6.017026 TCCACACGATTAGTACAAAAATTGCA 60.017 34.615 0.00 0.00 0.00 4.08
402 403 6.087555 CCACACGATTAGTACAAAAATTGCAC 59.912 38.462 0.00 0.00 0.00 4.57
403 404 6.087555 CACACGATTAGTACAAAAATTGCACC 59.912 38.462 0.00 0.00 0.00 5.01
404 405 6.146216 CACGATTAGTACAAAAATTGCACCA 58.854 36.000 0.00 0.00 0.00 4.17
405 406 6.806249 CACGATTAGTACAAAAATTGCACCAT 59.194 34.615 0.00 0.00 0.00 3.55
406 407 7.328249 CACGATTAGTACAAAAATTGCACCATT 59.672 33.333 0.00 0.00 0.00 3.16
407 408 7.870445 ACGATTAGTACAAAAATTGCACCATTT 59.130 29.630 0.00 0.00 0.00 2.32
408 409 9.347934 CGATTAGTACAAAAATTGCACCATTTA 57.652 29.630 0.00 0.00 0.00 1.40
423 424 8.462589 TGCACCATTTATATTATGCAAGAAGA 57.537 30.769 0.00 0.00 39.94 2.87
424 425 8.911965 TGCACCATTTATATTATGCAAGAAGAA 58.088 29.630 0.00 0.00 39.94 2.52
425 426 9.748708 GCACCATTTATATTATGCAAGAAGAAA 57.251 29.630 0.00 0.00 33.27 2.52
434 435 9.935682 ATATTATGCAAGAAGAAACATAACGTG 57.064 29.630 0.00 0.00 37.69 4.49
435 436 4.481930 TGCAAGAAGAAACATAACGTGG 57.518 40.909 0.00 0.00 0.00 4.94
436 437 3.880490 TGCAAGAAGAAACATAACGTGGT 59.120 39.130 0.00 0.00 0.00 4.16
437 438 4.219033 GCAAGAAGAAACATAACGTGGTG 58.781 43.478 0.00 0.00 0.00 4.17
438 439 4.024387 GCAAGAAGAAACATAACGTGGTGA 60.024 41.667 7.37 0.00 0.00 4.02
439 440 5.504994 GCAAGAAGAAACATAACGTGGTGAA 60.505 40.000 7.37 0.00 0.00 3.18
440 441 6.491394 CAAGAAGAAACATAACGTGGTGAAA 58.509 36.000 7.37 0.00 0.00 2.69
441 442 6.877611 AGAAGAAACATAACGTGGTGAAAT 57.122 33.333 7.37 0.00 0.00 2.17
442 443 7.272037 AGAAGAAACATAACGTGGTGAAATT 57.728 32.000 7.37 0.65 0.00 1.82
443 444 7.712797 AGAAGAAACATAACGTGGTGAAATTT 58.287 30.769 7.37 0.00 0.00 1.82
444 445 8.194769 AGAAGAAACATAACGTGGTGAAATTTT 58.805 29.630 7.37 0.00 0.00 1.82
445 446 8.710835 AAGAAACATAACGTGGTGAAATTTTT 57.289 26.923 7.37 0.00 0.00 1.94
446 447 8.125728 AGAAACATAACGTGGTGAAATTTTTG 57.874 30.769 7.37 0.00 0.00 2.44
447 448 7.762159 AGAAACATAACGTGGTGAAATTTTTGT 59.238 29.630 7.37 0.00 0.00 2.83
448 449 8.928270 AAACATAACGTGGTGAAATTTTTGTA 57.072 26.923 7.37 0.00 0.00 2.41
449 450 7.917720 ACATAACGTGGTGAAATTTTTGTAC 57.082 32.000 7.37 0.00 0.00 2.90
450 451 7.708998 ACATAACGTGGTGAAATTTTTGTACT 58.291 30.769 7.37 0.00 0.00 2.73
451 452 7.858879 ACATAACGTGGTGAAATTTTTGTACTC 59.141 33.333 7.37 0.00 0.00 2.59
452 453 6.445357 AACGTGGTGAAATTTTTGTACTCT 57.555 33.333 0.00 0.00 0.00 3.24
453 454 7.556733 AACGTGGTGAAATTTTTGTACTCTA 57.443 32.000 0.00 0.00 0.00 2.43
454 455 7.556733 ACGTGGTGAAATTTTTGTACTCTAA 57.443 32.000 0.00 0.00 0.00 2.10
455 456 8.161699 ACGTGGTGAAATTTTTGTACTCTAAT 57.838 30.769 0.00 0.00 0.00 1.73
456 457 9.275398 ACGTGGTGAAATTTTTGTACTCTAATA 57.725 29.630 0.00 0.00 0.00 0.98
484 485 8.827177 ATATATATTTGTATTATGCCCGGTCG 57.173 34.615 0.00 0.00 0.00 4.79
485 486 2.983907 TTTGTATTATGCCCGGTCGA 57.016 45.000 0.00 0.00 0.00 4.20
486 487 2.983907 TTGTATTATGCCCGGTCGAA 57.016 45.000 0.00 0.00 0.00 3.71
487 488 3.478857 TTGTATTATGCCCGGTCGAAT 57.521 42.857 0.00 0.00 0.00 3.34
488 489 4.603989 TTGTATTATGCCCGGTCGAATA 57.396 40.909 0.00 0.00 0.00 1.75
495 496 3.823281 TGCCCGGTCGAATAAGATTTA 57.177 42.857 0.00 0.00 0.00 1.40
529 530 4.882427 TCGTTTTACTTGGGTGTTTGATCA 59.118 37.500 0.00 0.00 0.00 2.92
571 572 0.460284 CGAAGTGGTTCCAGATCCCG 60.460 60.000 0.00 0.00 0.00 5.14
573 574 0.546747 AAGTGGTTCCAGATCCCGGA 60.547 55.000 0.73 0.00 0.00 5.14
575 576 2.355986 TGGTTCCAGATCCCGGACG 61.356 63.158 0.73 0.00 30.29 4.79
579 580 0.535335 TTCCAGATCCCGGACGAAAG 59.465 55.000 0.73 0.00 30.29 2.62
580 581 1.521681 CCAGATCCCGGACGAAAGC 60.522 63.158 0.73 0.00 0.00 3.51
583 584 0.613777 AGATCCCGGACGAAAGCTTT 59.386 50.000 12.53 12.53 0.00 3.51
589 590 0.989890 CGGACGAAAGCTTTACGAGG 59.010 55.000 26.61 15.89 0.00 4.63
591 592 1.991264 GGACGAAAGCTTTACGAGGAC 59.009 52.381 26.61 17.39 0.00 3.85
595 596 2.410939 GAAAGCTTTACGAGGACGGTT 58.589 47.619 12.68 0.00 44.46 4.44
596 597 2.538512 AAGCTTTACGAGGACGGTTT 57.461 45.000 0.00 0.00 44.46 3.27
611 612 7.537991 CGAGGACGGTTTATTATTAGTGAGATC 59.462 40.741 0.00 0.00 35.72 2.75
614 615 9.543783 GGACGGTTTATTATTAGTGAGATCTTT 57.456 33.333 0.00 0.00 0.00 2.52
631 642 9.597170 TGAGATCTTTTGTGAATAGATGAGAAG 57.403 33.333 0.00 0.00 0.00 2.85
640 651 6.816640 TGTGAATAGATGAGAAGTAAAACGGG 59.183 38.462 0.00 0.00 0.00 5.28
641 652 7.039882 GTGAATAGATGAGAAGTAAAACGGGA 58.960 38.462 0.00 0.00 0.00 5.14
648 659 5.127491 TGAGAAGTAAAACGGGACAAATGT 58.873 37.500 0.00 0.00 0.00 2.71
654 665 6.037726 AGTAAAACGGGACAAATGTTCAAAC 58.962 36.000 0.00 0.00 0.00 2.93
659 670 2.621526 GGGACAAATGTTCAAACCGTCT 59.378 45.455 0.00 0.00 0.00 4.18
660 671 3.550030 GGGACAAATGTTCAAACCGTCTG 60.550 47.826 0.00 0.00 0.00 3.51
670 681 1.790623 CAAACCGTCTGACGAATCGTT 59.209 47.619 29.93 21.06 46.05 3.85
671 682 1.415374 AACCGTCTGACGAATCGTTG 58.585 50.000 29.93 14.26 46.05 4.10
676 687 0.888619 TCTGACGAATCGTTGGAGCT 59.111 50.000 10.45 0.00 41.37 4.09
677 688 1.135373 TCTGACGAATCGTTGGAGCTC 60.135 52.381 10.45 4.71 41.37 4.09
678 689 0.456142 TGACGAATCGTTGGAGCTCG 60.456 55.000 10.45 0.00 41.37 5.03
679 690 0.179171 GACGAATCGTTGGAGCTCGA 60.179 55.000 10.45 0.00 41.37 4.04
681 692 1.336517 ACGAATCGTTGGAGCTCGAAA 60.337 47.619 13.14 4.52 36.35 3.46
684 695 3.550275 CGAATCGTTGGAGCTCGAAAATA 59.450 43.478 13.14 2.19 39.45 1.40
685 696 4.032445 CGAATCGTTGGAGCTCGAAAATAA 59.968 41.667 13.14 0.00 39.45 1.40
686 697 5.445407 CGAATCGTTGGAGCTCGAAAATAAA 60.445 40.000 13.14 0.00 39.45 1.40
687 698 4.921470 TCGTTGGAGCTCGAAAATAAAG 57.079 40.909 13.14 1.67 33.13 1.85
688 699 3.124636 TCGTTGGAGCTCGAAAATAAAGC 59.875 43.478 13.14 0.00 36.27 3.51
701 724 6.915843 TCGAAAATAAAGCAAGGAAAACAGAC 59.084 34.615 0.00 0.00 0.00 3.51
702 725 6.918022 CGAAAATAAAGCAAGGAAAACAGACT 59.082 34.615 0.00 0.00 0.00 3.24
703 726 7.435192 CGAAAATAAAGCAAGGAAAACAGACTT 59.565 33.333 0.00 0.00 0.00 3.01
704 727 8.424274 AAAATAAAGCAAGGAAAACAGACTTG 57.576 30.769 0.00 0.00 43.28 3.16
705 728 6.715347 ATAAAGCAAGGAAAACAGACTTGT 57.285 33.333 0.00 0.00 42.60 3.16
706 729 4.376340 AAGCAAGGAAAACAGACTTGTG 57.624 40.909 0.00 0.00 42.60 3.33
707 730 2.099756 AGCAAGGAAAACAGACTTGTGC 59.900 45.455 0.00 0.00 42.60 4.57
708 731 2.159254 GCAAGGAAAACAGACTTGTGCA 60.159 45.455 0.00 0.00 42.60 4.57
709 732 3.438360 CAAGGAAAACAGACTTGTGCAC 58.562 45.455 10.75 10.75 37.67 4.57
710 733 1.670811 AGGAAAACAGACTTGTGCACG 59.329 47.619 13.13 0.65 37.67 5.34
711 734 1.466855 GAAAACAGACTTGTGCACGC 58.533 50.000 13.13 1.41 37.67 5.34
712 735 0.100503 AAAACAGACTTGTGCACGCC 59.899 50.000 13.13 0.86 37.67 5.68
713 736 2.047151 AAACAGACTTGTGCACGCCG 62.047 55.000 13.13 5.32 37.67 6.46
714 737 2.967076 CAGACTTGTGCACGCCGT 60.967 61.111 13.13 8.77 0.00 5.68
715 738 2.967076 AGACTTGTGCACGCCGTG 60.967 61.111 13.95 13.95 36.51 4.94
716 739 3.269347 GACTTGTGCACGCCGTGT 61.269 61.111 19.57 6.06 35.75 4.49
717 740 2.819552 GACTTGTGCACGCCGTGTT 61.820 57.895 19.57 0.00 35.75 3.32
718 741 2.052237 CTTGTGCACGCCGTGTTC 60.052 61.111 19.57 12.31 35.75 3.18
719 742 2.818487 CTTGTGCACGCCGTGTTCA 61.818 57.895 19.57 14.71 35.75 3.18
720 743 2.316361 CTTGTGCACGCCGTGTTCAA 62.316 55.000 19.57 20.25 35.75 2.69
721 744 1.923227 TTGTGCACGCCGTGTTCAAA 61.923 50.000 19.57 1.05 35.75 2.69
722 745 1.226435 GTGCACGCCGTGTTCAAAA 60.226 52.632 19.57 0.00 35.75 2.44
723 746 1.063327 TGCACGCCGTGTTCAAAAG 59.937 52.632 19.57 0.00 35.75 2.27
724 747 1.657181 GCACGCCGTGTTCAAAAGG 60.657 57.895 19.57 0.00 35.75 3.11
725 748 2.018544 CACGCCGTGTTCAAAAGGA 58.981 52.632 9.53 0.00 0.00 3.36
726 749 0.378962 CACGCCGTGTTCAAAAGGAA 59.621 50.000 9.53 0.00 0.00 3.36
727 750 0.661020 ACGCCGTGTTCAAAAGGAAG 59.339 50.000 0.00 0.00 35.82 3.46
728 751 0.941542 CGCCGTGTTCAAAAGGAAGA 59.058 50.000 0.00 0.00 35.82 2.87
729 752 1.069906 CGCCGTGTTCAAAAGGAAGAG 60.070 52.381 0.00 0.00 35.82 2.85
730 753 2.218603 GCCGTGTTCAAAAGGAAGAGA 58.781 47.619 0.00 0.00 35.82 3.10
731 754 2.224314 GCCGTGTTCAAAAGGAAGAGAG 59.776 50.000 0.00 0.00 35.82 3.20
732 755 3.728845 CCGTGTTCAAAAGGAAGAGAGA 58.271 45.455 0.00 0.00 35.82 3.10
733 756 4.127171 CCGTGTTCAAAAGGAAGAGAGAA 58.873 43.478 0.00 0.00 35.82 2.87
734 757 4.574828 CCGTGTTCAAAAGGAAGAGAGAAA 59.425 41.667 0.00 0.00 35.82 2.52
735 758 5.065988 CCGTGTTCAAAAGGAAGAGAGAAAA 59.934 40.000 0.00 0.00 35.82 2.29
736 759 6.238759 CCGTGTTCAAAAGGAAGAGAGAAAAT 60.239 38.462 0.00 0.00 35.82 1.82
737 760 7.196331 CGTGTTCAAAAGGAAGAGAGAAAATT 58.804 34.615 0.00 0.00 35.82 1.82
738 761 7.702348 CGTGTTCAAAAGGAAGAGAGAAAATTT 59.298 33.333 0.00 0.00 35.82 1.82
739 762 9.025020 GTGTTCAAAAGGAAGAGAGAAAATTTC 57.975 33.333 0.00 0.00 35.82 2.17
740 763 8.971073 TGTTCAAAAGGAAGAGAGAAAATTTCT 58.029 29.630 8.12 8.12 38.39 2.52
741 764 9.242477 GTTCAAAAGGAAGAGAGAAAATTTCTG 57.758 33.333 13.55 0.00 36.73 3.02
742 765 7.428826 TCAAAAGGAAGAGAGAAAATTTCTGC 58.571 34.615 13.55 5.14 40.87 4.26
743 766 6.966534 AAAGGAAGAGAGAAAATTTCTGCA 57.033 33.333 13.55 0.00 40.87 4.41
744 767 6.966534 AAGGAAGAGAGAAAATTTCTGCAA 57.033 33.333 13.55 0.00 40.87 4.08
745 768 6.572167 AGGAAGAGAGAAAATTTCTGCAAG 57.428 37.500 13.55 0.00 40.87 4.01
746 769 5.476254 AGGAAGAGAGAAAATTTCTGCAAGG 59.524 40.000 13.55 0.00 40.87 3.61
760 783 4.039092 AAGGCCGCAGTGCATCCT 62.039 61.111 16.83 16.86 32.70 3.24
763 786 2.501128 GCCGCAGTGCATCCTCTA 59.499 61.111 16.83 0.00 0.00 2.43
764 787 1.593750 GCCGCAGTGCATCCTCTAG 60.594 63.158 16.83 0.00 0.00 2.43
765 788 1.593750 CCGCAGTGCATCCTCTAGC 60.594 63.158 16.83 0.00 0.00 3.42
766 789 1.142531 CGCAGTGCATCCTCTAGCA 59.857 57.895 16.83 0.00 38.65 3.49
770 793 3.647367 TGCATCCTCTAGCACCCC 58.353 61.111 0.00 0.00 35.51 4.95
771 794 1.003442 TGCATCCTCTAGCACCCCT 59.997 57.895 0.00 0.00 35.51 4.79
772 795 1.050988 TGCATCCTCTAGCACCCCTC 61.051 60.000 0.00 0.00 35.51 4.30
773 796 1.763546 GCATCCTCTAGCACCCCTCC 61.764 65.000 0.00 0.00 0.00 4.30
774 797 0.105246 CATCCTCTAGCACCCCTCCT 60.105 60.000 0.00 0.00 0.00 3.69
793 816 4.063967 CACGTGCCTAGTGCCGGA 62.064 66.667 5.05 0.00 40.16 5.14
803 826 2.983030 GTGCCGGACACCAATGCA 60.983 61.111 5.05 0.00 44.02 3.96
820 843 2.990774 GCATTGCGCATTTCATTCAG 57.009 45.000 12.75 0.00 41.79 3.02
821 844 1.005347 GCATTGCGCATTTCATTCAGC 60.005 47.619 12.75 1.48 41.79 4.26
822 845 1.591158 CATTGCGCATTTCATTCAGCC 59.409 47.619 12.75 0.00 0.00 4.85
838 891 0.472471 AGCCACTCAGTTCGGGAAAA 59.528 50.000 0.00 0.00 0.00 2.29
839 892 1.073923 AGCCACTCAGTTCGGGAAAAT 59.926 47.619 0.00 0.00 0.00 1.82
867 923 0.735632 GACTGAGCTCGGCAGTGAAG 60.736 60.000 22.80 7.17 45.94 3.02
870 926 1.181741 TGAGCTCGGCAGTGAAGAGT 61.182 55.000 9.64 4.49 34.69 3.24
873 929 1.203523 AGCTCGGCAGTGAAGAGTAAG 59.796 52.381 14.17 0.00 34.69 2.34
897 953 4.082125 AGAGAATTCTGTGCGGGATTTTT 58.918 39.130 14.00 0.00 30.72 1.94
925 981 0.743345 CCTCTTCTTTTACCGGCCGG 60.743 60.000 42.17 42.17 42.03 6.13
929 985 2.360726 CTTTTACCGGCCGGGCTT 60.361 61.111 44.99 28.76 40.62 4.35
940 996 1.745489 CCGGGCTTCCTTTTCCTCG 60.745 63.158 0.00 0.00 0.00 4.63
953 1016 0.042131 TTCCTCGCTCCCTTCCCTTA 59.958 55.000 0.00 0.00 0.00 2.69
954 1017 0.686769 TCCTCGCTCCCTTCCCTTAC 60.687 60.000 0.00 0.00 0.00 2.34
986 1118 2.661718 GTGAAAGGTTTCCAACAGGGA 58.338 47.619 0.05 0.00 46.61 4.20
1008 1140 0.109458 CACCGTCGACGATGGAGAAA 60.109 55.000 36.52 0.00 40.94 2.52
1009 1141 0.815734 ACCGTCGACGATGGAGAAAT 59.184 50.000 36.52 15.63 40.94 2.17
1018 1150 1.492720 GATGGAGAAATCCGACGAGC 58.507 55.000 0.00 0.00 0.00 5.03
1075 1213 4.259356 CCATGTGAAGCAAGAAGAGATCA 58.741 43.478 0.00 0.00 0.00 2.92
1098 1239 4.838152 CACCATGCGGTCGGAGGG 62.838 72.222 13.52 13.52 44.71 4.30
1107 1248 2.362120 GTCGGAGGGGGAGACGAA 60.362 66.667 0.00 0.00 37.08 3.85
1110 1251 3.471806 GGAGGGGGAGACGAAGGC 61.472 72.222 0.00 0.00 0.00 4.35
1180 1324 1.576356 GGTGAAGATCGACATGAGCC 58.424 55.000 0.00 0.00 31.78 4.70
1221 1365 2.586792 CTCCCCTTCAAGCCTCCG 59.413 66.667 0.00 0.00 0.00 4.63
1236 1380 2.227089 CTCCGGTCTTCCAGGTTCCG 62.227 65.000 0.00 0.00 40.72 4.30
1254 1873 1.403514 CCGTGCTCTCTCTGTTTCCTC 60.404 57.143 0.00 0.00 0.00 3.71
1259 1878 2.037772 GCTCTCTCTGTTTCCTCCACAA 59.962 50.000 0.00 0.00 0.00 3.33
1265 1893 0.768622 TGTTTCCTCCACAATCCGGT 59.231 50.000 0.00 0.00 0.00 5.28
1266 1894 1.271163 TGTTTCCTCCACAATCCGGTC 60.271 52.381 0.00 0.00 0.00 4.79
1267 1895 0.036765 TTTCCTCCACAATCCGGTCG 60.037 55.000 0.00 0.00 0.00 4.79
1268 1896 0.901114 TTCCTCCACAATCCGGTCGA 60.901 55.000 0.00 0.00 0.00 4.20
1305 1941 3.200483 GGTCGTGCCGATTTATTTACCT 58.800 45.455 0.67 0.00 38.42 3.08
1997 2682 2.046314 CGGCGTCCATGGAGGTTT 60.046 61.111 29.85 0.00 39.02 3.27
1999 2684 1.299976 GGCGTCCATGGAGGTTTCT 59.700 57.895 29.85 0.00 39.02 2.52
2007 2692 3.077359 CCATGGAGGTTTCTCTCAACAC 58.923 50.000 5.56 0.00 39.86 3.32
2034 2719 1.202463 CGACAAGATCTCCCGCTGATT 60.202 52.381 0.00 0.00 0.00 2.57
2037 2722 1.415659 CAAGATCTCCCGCTGATTCCT 59.584 52.381 0.00 0.00 0.00 3.36
2065 2763 4.008330 TCGATCGATGTATCCCTTCTACC 58.992 47.826 15.15 0.00 0.00 3.18
2073 2771 0.912487 ATCCCTTCTACCACCGGCAA 60.912 55.000 0.00 0.00 0.00 4.52
2074 2772 1.128809 TCCCTTCTACCACCGGCAAA 61.129 55.000 0.00 0.00 0.00 3.68
2079 2777 0.390603 TCTACCACCGGCAAATCGTG 60.391 55.000 0.00 0.00 0.00 4.35
2180 2917 6.403866 AACCTGCAGTGAAATTTAATGTGA 57.596 33.333 13.81 0.00 0.00 3.58
2181 2918 6.017400 ACCTGCAGTGAAATTTAATGTGAG 57.983 37.500 13.81 0.00 0.00 3.51
2182 2919 5.769662 ACCTGCAGTGAAATTTAATGTGAGA 59.230 36.000 13.81 0.00 0.00 3.27
2183 2920 6.088824 CCTGCAGTGAAATTTAATGTGAGAC 58.911 40.000 13.81 0.00 0.00 3.36
2184 2921 6.072286 CCTGCAGTGAAATTTAATGTGAGACT 60.072 38.462 13.81 0.00 0.00 3.24
2197 2934 9.616156 TTTAATGTGAGACTAGACTAGAGTAGG 57.384 37.037 16.55 0.00 0.00 3.18
2225 2962 3.360340 GCTGCTCCTGCACACACC 61.360 66.667 0.00 0.00 45.31 4.16
2226 2963 2.111669 CTGCTCCTGCACACACCA 59.888 61.111 0.00 0.00 45.31 4.17
2227 2964 2.203195 TGCTCCTGCACACACCAC 60.203 61.111 0.00 0.00 45.31 4.16
2228 2965 2.980233 GCTCCTGCACACACCACC 60.980 66.667 0.00 0.00 39.41 4.61
2229 2966 2.281761 CTCCTGCACACACCACCC 60.282 66.667 0.00 0.00 0.00 4.61
2230 2967 4.248842 TCCTGCACACACCACCCG 62.249 66.667 0.00 0.00 0.00 5.28
2252 2989 2.275380 ACCCATGGCTTGCCGTTTC 61.275 57.895 6.09 0.00 0.00 2.78
2265 3002 2.329678 CCGTTTCGGTGCAAAGTGCA 62.330 55.000 0.00 0.00 44.71 4.57
2304 3071 4.043200 GCAGCTTTGCCCGTCACC 62.043 66.667 0.00 0.00 0.00 4.02
2305 3072 3.365265 CAGCTTTGCCCGTCACCC 61.365 66.667 0.00 0.00 0.00 4.61
2318 3085 4.087892 CACCCCTCAGCCACTCCG 62.088 72.222 0.00 0.00 0.00 4.63
2320 3087 3.465403 CCCCTCAGCCACTCCGAG 61.465 72.222 0.00 0.00 0.00 4.63
2321 3088 4.154347 CCCTCAGCCACTCCGAGC 62.154 72.222 0.00 0.00 0.00 5.03
2322 3089 4.504916 CCTCAGCCACTCCGAGCG 62.505 72.222 0.00 0.00 0.00 5.03
2324 3091 3.691744 CTCAGCCACTCCGAGCGAC 62.692 68.421 0.00 0.00 0.00 5.19
2325 3092 4.056125 CAGCCACTCCGAGCGACA 62.056 66.667 0.00 0.00 0.00 4.35
2329 3096 2.636412 CCACTCCGAGCGACAAGGA 61.636 63.158 0.00 0.00 0.00 3.36
2330 3097 1.444553 CACTCCGAGCGACAAGGAC 60.445 63.158 0.00 0.00 0.00 3.85
2331 3098 2.182030 CTCCGAGCGACAAGGACC 59.818 66.667 0.00 0.00 0.00 4.46
2332 3099 2.599281 TCCGAGCGACAAGGACCA 60.599 61.111 0.00 0.00 0.00 4.02
2333 3100 1.949847 CTCCGAGCGACAAGGACCAT 61.950 60.000 0.00 0.00 0.00 3.55
2334 3101 0.681887 TCCGAGCGACAAGGACCATA 60.682 55.000 0.00 0.00 0.00 2.74
2335 3102 0.174845 CCGAGCGACAAGGACCATAA 59.825 55.000 0.00 0.00 0.00 1.90
2336 3103 1.404986 CCGAGCGACAAGGACCATAAA 60.405 52.381 0.00 0.00 0.00 1.40
2337 3104 1.927174 CGAGCGACAAGGACCATAAAG 59.073 52.381 0.00 0.00 0.00 1.85
2338 3105 2.416836 CGAGCGACAAGGACCATAAAGA 60.417 50.000 0.00 0.00 0.00 2.52
2339 3106 3.738281 CGAGCGACAAGGACCATAAAGAT 60.738 47.826 0.00 0.00 0.00 2.40
2340 3107 4.499188 CGAGCGACAAGGACCATAAAGATA 60.499 45.833 0.00 0.00 0.00 1.98
2341 3108 5.353394 AGCGACAAGGACCATAAAGATAA 57.647 39.130 0.00 0.00 0.00 1.75
2342 3109 5.741011 AGCGACAAGGACCATAAAGATAAA 58.259 37.500 0.00 0.00 0.00 1.40
2398 3165 5.374921 CTGCTACCCATCAGAATTCAGAAT 58.625 41.667 8.44 0.00 32.26 2.40
2401 3168 6.002704 GCTACCCATCAGAATTCAGAATCAT 58.997 40.000 8.44 0.00 0.00 2.45
2412 3179 2.372264 TCAGAATCATGGGCAGCTTTC 58.628 47.619 0.00 0.00 0.00 2.62
2413 3180 2.025605 TCAGAATCATGGGCAGCTTTCT 60.026 45.455 0.00 0.00 0.00 2.52
2414 3181 2.758979 CAGAATCATGGGCAGCTTTCTT 59.241 45.455 0.00 0.00 0.00 2.52
2415 3182 2.758979 AGAATCATGGGCAGCTTTCTTG 59.241 45.455 0.00 0.00 0.00 3.02
2416 3183 2.519771 ATCATGGGCAGCTTTCTTGA 57.480 45.000 0.00 0.00 0.00 3.02
2417 3184 1.538047 TCATGGGCAGCTTTCTTGAC 58.462 50.000 0.00 0.00 0.00 3.18
2418 3185 0.529378 CATGGGCAGCTTTCTTGACC 59.471 55.000 0.00 0.00 0.00 4.02
2419 3186 0.112995 ATGGGCAGCTTTCTTGACCA 59.887 50.000 1.74 1.74 0.00 4.02
2420 3187 0.112995 TGGGCAGCTTTCTTGACCAT 59.887 50.000 0.00 0.00 0.00 3.55
2421 3188 0.813821 GGGCAGCTTTCTTGACCATC 59.186 55.000 0.00 0.00 0.00 3.51
2422 3189 1.615384 GGGCAGCTTTCTTGACCATCT 60.615 52.381 0.00 0.00 0.00 2.90
2423 3190 2.165998 GGCAGCTTTCTTGACCATCTT 58.834 47.619 0.00 0.00 0.00 2.40
2424 3191 2.094854 GGCAGCTTTCTTGACCATCTTG 60.095 50.000 0.00 0.00 0.00 3.02
2425 3192 2.670509 GCAGCTTTCTTGACCATCTTGC 60.671 50.000 0.00 0.00 0.00 4.01
2426 3193 2.818432 CAGCTTTCTTGACCATCTTGCT 59.182 45.455 0.00 0.00 0.00 3.91
2431 3198 0.725686 CTTGACCATCTTGCTGCTCG 59.274 55.000 0.00 0.00 0.00 5.03
2490 3503 4.773674 TCCATGTTCCATTGCTTTCTTGAT 59.226 37.500 0.00 0.00 0.00 2.57
2561 3574 0.919710 ACCAGGTTATCAAGCCCTCC 59.080 55.000 0.00 0.00 0.00 4.30
2571 3584 4.870021 ATCAAGCCCTCCATATTATCCC 57.130 45.455 0.00 0.00 0.00 3.85
2599 3612 6.013984 AGGGAGCAAAACAGAAAATTGATGAT 60.014 34.615 0.00 0.00 0.00 2.45
2617 3630 3.664107 TGATGGTGTGAGTTAACAGAGC 58.336 45.455 8.61 0.00 33.30 4.09
2810 3837 8.415553 TGAAATGATTTCAGACAACATCAACTT 58.584 29.630 16.04 0.00 44.21 2.66
2868 3898 2.040813 ACTGATGTTGTTCAGCCTCCAT 59.959 45.455 1.51 0.00 45.75 3.41
2871 3901 3.519107 TGATGTTGTTCAGCCTCCATAGA 59.481 43.478 0.00 0.00 0.00 1.98
2920 3950 9.209175 ACTAAAATATAATAGCTTCAGCCTTCG 57.791 33.333 0.00 0.00 43.38 3.79
2924 3954 2.770164 ATAGCTTCAGCCTTCGTGTT 57.230 45.000 0.00 0.00 43.38 3.32
2939 3969 7.593644 AGCCTTCGTGTTACAAACATATTTTTC 59.406 33.333 0.00 0.00 44.35 2.29
2945 3976 6.363896 GTGTTACAAACATATTTTTCCCCACG 59.636 38.462 0.00 0.00 44.35 4.94
2963 3994 6.819649 TCCCCACGAATTTATAAGTGTAGTTG 59.180 38.462 0.00 0.00 33.14 3.16
2967 3998 8.875803 CCACGAATTTATAAGTGTAGTTGCTTA 58.124 33.333 0.00 0.00 33.14 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.447548 GCAATTTCAATGCAAACTTGTGTGT 60.448 36.000 0.00 0.00 43.29 3.72
1 2 4.965158 GCAATTTCAATGCAAACTTGTGTG 59.035 37.500 0.00 0.00 43.29 3.82
2 3 5.159399 GCAATTTCAATGCAAACTTGTGT 57.841 34.783 0.00 0.00 43.29 3.72
15 16 9.920133 TGCATATTACTAAAAGTGCAATTTCAA 57.080 25.926 13.16 5.62 36.62 2.69
16 17 9.920133 TTGCATATTACTAAAAGTGCAATTTCA 57.080 25.926 13.16 0.00 40.79 2.69
21 22 9.202273 CCTTTTTGCATATTACTAAAAGTGCAA 57.798 29.630 13.60 6.50 42.39 4.08
22 23 8.580720 TCCTTTTTGCATATTACTAAAAGTGCA 58.419 29.630 13.60 0.00 37.82 4.57
23 24 8.980143 TCCTTTTTGCATATTACTAAAAGTGC 57.020 30.769 13.60 0.00 37.82 4.40
38 39 9.941325 AAACAATATCATATGTTCCTTTTTGCA 57.059 25.926 1.90 0.00 38.75 4.08
41 42 9.941325 TGCAAACAATATCATATGTTCCTTTTT 57.059 25.926 1.90 0.00 38.75 1.94
42 43 9.369904 GTGCAAACAATATCATATGTTCCTTTT 57.630 29.630 1.90 0.00 38.75 2.27
43 44 8.752187 AGTGCAAACAATATCATATGTTCCTTT 58.248 29.630 1.90 0.00 38.75 3.11
44 45 8.297470 AGTGCAAACAATATCATATGTTCCTT 57.703 30.769 1.90 0.00 38.75 3.36
45 46 7.776969 AGAGTGCAAACAATATCATATGTTCCT 59.223 33.333 1.90 0.00 38.75 3.36
46 47 7.934457 AGAGTGCAAACAATATCATATGTTCC 58.066 34.615 1.90 0.00 38.75 3.62
47 48 9.869844 GTAGAGTGCAAACAATATCATATGTTC 57.130 33.333 1.90 0.00 38.75 3.18
48 49 9.618890 AGTAGAGTGCAAACAATATCATATGTT 57.381 29.630 1.90 0.00 41.31 2.71
58 59 9.448438 TGTGAATTATAGTAGAGTGCAAACAAT 57.552 29.630 0.00 0.00 0.00 2.71
59 60 8.717821 GTGTGAATTATAGTAGAGTGCAAACAA 58.282 33.333 0.00 0.00 0.00 2.83
60 61 7.875554 TGTGTGAATTATAGTAGAGTGCAAACA 59.124 33.333 0.00 0.00 0.00 2.83
61 62 8.169268 GTGTGTGAATTATAGTAGAGTGCAAAC 58.831 37.037 0.00 0.00 0.00 2.93
62 63 7.875554 TGTGTGTGAATTATAGTAGAGTGCAAA 59.124 33.333 0.00 0.00 0.00 3.68
63 64 7.382898 TGTGTGTGAATTATAGTAGAGTGCAA 58.617 34.615 0.00 0.00 0.00 4.08
64 65 6.930731 TGTGTGTGAATTATAGTAGAGTGCA 58.069 36.000 0.00 0.00 0.00 4.57
65 66 7.492669 ACATGTGTGTGAATTATAGTAGAGTGC 59.507 37.037 0.00 0.00 37.14 4.40
66 67 8.932945 ACATGTGTGTGAATTATAGTAGAGTG 57.067 34.615 0.00 0.00 37.14 3.51
67 68 9.371136 CAACATGTGTGTGAATTATAGTAGAGT 57.629 33.333 0.00 0.00 38.92 3.24
68 69 8.331022 GCAACATGTGTGTGAATTATAGTAGAG 58.669 37.037 0.00 0.00 38.92 2.43
69 70 7.821846 TGCAACATGTGTGTGAATTATAGTAGA 59.178 33.333 0.00 0.00 38.92 2.59
70 71 7.973601 TGCAACATGTGTGTGAATTATAGTAG 58.026 34.615 0.00 0.00 38.92 2.57
71 72 7.913674 TGCAACATGTGTGTGAATTATAGTA 57.086 32.000 0.00 0.00 38.92 1.82
72 73 6.816134 TGCAACATGTGTGTGAATTATAGT 57.184 33.333 0.00 0.00 38.92 2.12
73 74 8.615211 ACTATGCAACATGTGTGTGAATTATAG 58.385 33.333 0.00 4.36 38.92 1.31
74 75 8.504812 ACTATGCAACATGTGTGTGAATTATA 57.495 30.769 0.00 0.00 38.92 0.98
75 76 7.395190 ACTATGCAACATGTGTGTGAATTAT 57.605 32.000 0.00 0.00 38.92 1.28
76 77 6.816134 ACTATGCAACATGTGTGTGAATTA 57.184 33.333 0.00 0.00 38.92 1.40
77 78 5.710513 ACTATGCAACATGTGTGTGAATT 57.289 34.783 0.00 0.00 38.92 2.17
78 79 5.939883 AGTACTATGCAACATGTGTGTGAAT 59.060 36.000 0.00 0.00 38.92 2.57
79 80 5.304778 AGTACTATGCAACATGTGTGTGAA 58.695 37.500 0.00 0.00 38.92 3.18
80 81 4.893608 AGTACTATGCAACATGTGTGTGA 58.106 39.130 0.00 0.00 38.92 3.58
81 82 5.049474 ACAAGTACTATGCAACATGTGTGTG 60.049 40.000 0.00 0.00 38.92 3.82
82 83 5.049474 CACAAGTACTATGCAACATGTGTGT 60.049 40.000 13.73 2.24 39.33 3.72
83 84 5.384787 CACAAGTACTATGCAACATGTGTG 58.615 41.667 13.73 8.90 39.33 3.82
84 85 5.611796 CACAAGTACTATGCAACATGTGT 57.388 39.130 13.73 0.00 39.33 3.72
85 86 5.049474 ACACACAAGTACTATGCAACATGTG 60.049 40.000 18.23 18.23 45.80 3.21
86 87 5.063204 ACACACAAGTACTATGCAACATGT 58.937 37.500 0.00 0.00 0.00 3.21
87 88 5.611796 ACACACAAGTACTATGCAACATG 57.388 39.130 0.00 0.00 0.00 3.21
88 89 8.258007 AGTATACACACAAGTACTATGCAACAT 58.742 33.333 5.50 0.00 0.00 2.71
89 90 7.608153 AGTATACACACAAGTACTATGCAACA 58.392 34.615 5.50 0.00 0.00 3.33
90 91 8.475331 AAGTATACACACAAGTACTATGCAAC 57.525 34.615 5.50 0.00 0.00 4.17
142 143 8.515414 GCCACTACATTCTTTCTTAGAAAATGT 58.485 33.333 21.31 21.31 45.62 2.71
143 144 8.514594 TGCCACTACATTCTTTCTTAGAAAATG 58.485 33.333 14.37 14.37 45.62 2.32
144 145 8.635765 TGCCACTACATTCTTTCTTAGAAAAT 57.364 30.769 8.82 0.00 45.62 1.82
145 146 8.635765 ATGCCACTACATTCTTTCTTAGAAAA 57.364 30.769 8.82 0.00 45.62 2.29
146 147 8.514594 CAATGCCACTACATTCTTTCTTAGAAA 58.485 33.333 7.22 7.22 45.62 2.52
147 148 7.121168 CCAATGCCACTACATTCTTTCTTAGAA 59.879 37.037 0.00 0.00 46.50 2.10
148 149 6.599244 CCAATGCCACTACATTCTTTCTTAGA 59.401 38.462 0.00 0.00 38.19 2.10
149 150 6.375455 ACCAATGCCACTACATTCTTTCTTAG 59.625 38.462 0.00 0.00 38.19 2.18
150 151 6.245408 ACCAATGCCACTACATTCTTTCTTA 58.755 36.000 0.00 0.00 38.19 2.10
151 152 5.079643 ACCAATGCCACTACATTCTTTCTT 58.920 37.500 0.00 0.00 38.19 2.52
152 153 4.666512 ACCAATGCCACTACATTCTTTCT 58.333 39.130 0.00 0.00 38.19 2.52
153 154 5.163652 GGTACCAATGCCACTACATTCTTTC 60.164 44.000 7.15 0.00 38.19 2.62
154 155 4.705023 GGTACCAATGCCACTACATTCTTT 59.295 41.667 7.15 0.00 38.19 2.52
155 156 4.263727 TGGTACCAATGCCACTACATTCTT 60.264 41.667 13.60 0.00 38.19 2.52
156 157 3.265737 TGGTACCAATGCCACTACATTCT 59.734 43.478 13.60 0.00 38.19 2.40
157 158 3.616219 TGGTACCAATGCCACTACATTC 58.384 45.455 13.60 0.00 38.19 2.67
158 159 3.730215 TGGTACCAATGCCACTACATT 57.270 42.857 13.60 0.00 40.90 2.71
165 166 0.039035 GAAGGGTGGTACCAATGCCA 59.961 55.000 18.31 0.00 41.02 4.92
166 167 0.039035 TGAAGGGTGGTACCAATGCC 59.961 55.000 18.31 14.00 41.02 4.40
167 168 1.818674 CTTGAAGGGTGGTACCAATGC 59.181 52.381 18.31 4.02 41.02 3.56
168 169 3.433306 TCTTGAAGGGTGGTACCAATG 57.567 47.619 18.31 2.29 41.02 2.82
169 170 3.655777 TCTTCTTGAAGGGTGGTACCAAT 59.344 43.478 18.31 2.54 41.02 3.16
170 171 3.050089 TCTTCTTGAAGGGTGGTACCAA 58.950 45.455 18.31 0.00 41.02 3.67
171 172 2.696775 TCTTCTTGAAGGGTGGTACCA 58.303 47.619 11.60 11.60 41.02 3.25
172 173 3.782656 TTCTTCTTGAAGGGTGGTACC 57.217 47.619 4.43 4.43 37.60 3.34
173 174 7.754851 TTTATTTCTTCTTGAAGGGTGGTAC 57.245 36.000 10.08 0.00 35.89 3.34
175 176 8.950007 TTATTTATTTCTTCTTGAAGGGTGGT 57.050 30.769 10.08 0.00 35.89 4.16
219 220 9.330063 TGCAATTTATGTGTAAATTTGTGGAAA 57.670 25.926 0.00 0.00 44.22 3.13
220 221 8.893219 TGCAATTTATGTGTAAATTTGTGGAA 57.107 26.923 0.00 0.00 44.22 3.53
221 222 8.147058 ACTGCAATTTATGTGTAAATTTGTGGA 58.853 29.630 0.00 0.00 44.22 4.02
222 223 8.309163 ACTGCAATTTATGTGTAAATTTGTGG 57.691 30.769 0.00 0.00 44.22 4.17
299 300 8.630037 CCAATGACACTAACCTTCTTTTAAACT 58.370 33.333 0.00 0.00 0.00 2.66
300 301 8.410912 ACCAATGACACTAACCTTCTTTTAAAC 58.589 33.333 0.00 0.00 0.00 2.01
301 302 8.528044 ACCAATGACACTAACCTTCTTTTAAA 57.472 30.769 0.00 0.00 0.00 1.52
302 303 9.802039 ATACCAATGACACTAACCTTCTTTTAA 57.198 29.630 0.00 0.00 0.00 1.52
304 305 9.227777 GTATACCAATGACACTAACCTTCTTTT 57.772 33.333 0.00 0.00 0.00 2.27
305 306 7.827729 GGTATACCAATGACACTAACCTTCTTT 59.172 37.037 17.44 0.00 35.64 2.52
306 307 7.336396 GGTATACCAATGACACTAACCTTCTT 58.664 38.462 17.44 0.00 35.64 2.52
307 308 6.126854 GGGTATACCAATGACACTAACCTTCT 60.127 42.308 23.33 0.00 39.85 2.85
308 309 6.053650 GGGTATACCAATGACACTAACCTTC 58.946 44.000 23.33 0.00 39.85 3.46
309 310 5.729718 AGGGTATACCAATGACACTAACCTT 59.270 40.000 23.33 0.00 43.89 3.50
310 311 5.286221 AGGGTATACCAATGACACTAACCT 58.714 41.667 23.33 3.64 43.89 3.50
311 312 5.625568 AGGGTATACCAATGACACTAACC 57.374 43.478 23.33 1.29 43.89 2.85
312 313 9.623000 ATTTAAGGGTATACCAATGACACTAAC 57.377 33.333 23.33 1.49 43.89 2.34
315 316 9.847224 CTAATTTAAGGGTATACCAATGACACT 57.153 33.333 23.33 6.51 43.89 3.55
316 317 9.841295 TCTAATTTAAGGGTATACCAATGACAC 57.159 33.333 23.33 4.19 43.89 3.67
357 358 9.256715 CGTGTGGAAATTTTTGTTTTAAGTTTC 57.743 29.630 0.00 0.00 0.00 2.78
358 359 8.989980 TCGTGTGGAAATTTTTGTTTTAAGTTT 58.010 25.926 0.00 0.00 0.00 2.66
359 360 8.535690 TCGTGTGGAAATTTTTGTTTTAAGTT 57.464 26.923 0.00 0.00 0.00 2.66
360 361 8.710835 ATCGTGTGGAAATTTTTGTTTTAAGT 57.289 26.923 0.00 0.00 0.00 2.24
363 364 9.804758 ACTAATCGTGTGGAAATTTTTGTTTTA 57.195 25.926 0.00 0.00 0.00 1.52
364 365 8.710835 ACTAATCGTGTGGAAATTTTTGTTTT 57.289 26.923 0.00 0.00 0.00 2.43
365 366 9.240159 GTACTAATCGTGTGGAAATTTTTGTTT 57.760 29.630 0.00 0.00 0.00 2.83
366 367 8.407064 TGTACTAATCGTGTGGAAATTTTTGTT 58.593 29.630 0.00 0.00 0.00 2.83
367 368 7.932335 TGTACTAATCGTGTGGAAATTTTTGT 58.068 30.769 0.00 0.00 0.00 2.83
368 369 8.789881 TTGTACTAATCGTGTGGAAATTTTTG 57.210 30.769 0.00 0.00 0.00 2.44
369 370 9.804758 TTTTGTACTAATCGTGTGGAAATTTTT 57.195 25.926 0.00 0.00 0.00 1.94
370 371 9.804758 TTTTTGTACTAATCGTGTGGAAATTTT 57.195 25.926 0.00 0.00 0.00 1.82
371 372 9.974980 ATTTTTGTACTAATCGTGTGGAAATTT 57.025 25.926 0.00 0.00 0.00 1.82
372 373 9.974980 AATTTTTGTACTAATCGTGTGGAAATT 57.025 25.926 0.00 0.00 0.00 1.82
373 374 9.405587 CAATTTTTGTACTAATCGTGTGGAAAT 57.594 29.630 0.00 0.00 0.00 2.17
374 375 7.380065 GCAATTTTTGTACTAATCGTGTGGAAA 59.620 33.333 0.00 0.00 0.00 3.13
375 376 6.858993 GCAATTTTTGTACTAATCGTGTGGAA 59.141 34.615 0.00 0.00 0.00 3.53
376 377 6.017026 TGCAATTTTTGTACTAATCGTGTGGA 60.017 34.615 0.00 0.00 0.00 4.02
377 378 6.087555 GTGCAATTTTTGTACTAATCGTGTGG 59.912 38.462 0.00 0.00 42.10 4.17
378 379 6.087555 GGTGCAATTTTTGTACTAATCGTGTG 59.912 38.462 8.09 0.00 44.35 3.82
379 380 6.146898 GGTGCAATTTTTGTACTAATCGTGT 58.853 36.000 8.09 0.00 44.35 4.49
380 381 6.146216 TGGTGCAATTTTTGTACTAATCGTG 58.854 36.000 8.09 0.00 44.35 4.35
381 382 6.320494 TGGTGCAATTTTTGTACTAATCGT 57.680 33.333 8.09 0.00 44.35 3.73
382 383 7.810766 AATGGTGCAATTTTTGTACTAATCG 57.189 32.000 8.09 0.00 44.35 3.34
397 398 8.911965 TCTTCTTGCATAATATAAATGGTGCAA 58.088 29.630 9.78 9.78 46.52 4.08
398 399 8.462589 TCTTCTTGCATAATATAAATGGTGCA 57.537 30.769 0.00 0.00 40.42 4.57
399 400 9.748708 TTTCTTCTTGCATAATATAAATGGTGC 57.251 29.630 0.00 0.00 0.00 5.01
408 409 9.935682 CACGTTATGTTTCTTCTTGCATAATAT 57.064 29.630 0.00 0.00 36.57 1.28
409 410 8.394877 CCACGTTATGTTTCTTCTTGCATAATA 58.605 33.333 0.00 0.00 36.57 0.98
410 411 7.094377 ACCACGTTATGTTTCTTCTTGCATAAT 60.094 33.333 0.00 0.00 36.57 1.28
411 412 6.205853 ACCACGTTATGTTTCTTCTTGCATAA 59.794 34.615 0.00 0.00 33.17 1.90
412 413 5.703592 ACCACGTTATGTTTCTTCTTGCATA 59.296 36.000 0.00 0.00 0.00 3.14
413 414 4.518970 ACCACGTTATGTTTCTTCTTGCAT 59.481 37.500 0.00 0.00 0.00 3.96
414 415 3.880490 ACCACGTTATGTTTCTTCTTGCA 59.120 39.130 0.00 0.00 0.00 4.08
415 416 4.024387 TCACCACGTTATGTTTCTTCTTGC 60.024 41.667 0.00 0.00 0.00 4.01
416 417 5.666969 TCACCACGTTATGTTTCTTCTTG 57.333 39.130 0.00 0.00 0.00 3.02
417 418 6.687081 TTTCACCACGTTATGTTTCTTCTT 57.313 33.333 0.00 0.00 0.00 2.52
418 419 6.877611 ATTTCACCACGTTATGTTTCTTCT 57.122 33.333 0.00 0.00 0.00 2.85
419 420 7.924103 AAATTTCACCACGTTATGTTTCTTC 57.076 32.000 0.00 0.00 0.00 2.87
420 421 8.599774 CAAAAATTTCACCACGTTATGTTTCTT 58.400 29.630 0.00 0.00 0.00 2.52
421 422 7.762159 ACAAAAATTTCACCACGTTATGTTTCT 59.238 29.630 0.00 0.00 0.00 2.52
422 423 7.901002 ACAAAAATTTCACCACGTTATGTTTC 58.099 30.769 0.00 0.00 0.00 2.78
423 424 7.835634 ACAAAAATTTCACCACGTTATGTTT 57.164 28.000 0.00 0.00 0.00 2.83
424 425 8.192110 AGTACAAAAATTTCACCACGTTATGTT 58.808 29.630 0.00 0.00 0.00 2.71
425 426 7.708998 AGTACAAAAATTTCACCACGTTATGT 58.291 30.769 0.00 0.00 0.00 2.29
426 427 8.073768 AGAGTACAAAAATTTCACCACGTTATG 58.926 33.333 0.00 0.00 0.00 1.90
427 428 8.161699 AGAGTACAAAAATTTCACCACGTTAT 57.838 30.769 0.00 0.00 0.00 1.89
428 429 7.556733 AGAGTACAAAAATTTCACCACGTTA 57.443 32.000 0.00 0.00 0.00 3.18
429 430 6.445357 AGAGTACAAAAATTTCACCACGTT 57.555 33.333 0.00 0.00 0.00 3.99
430 431 7.556733 TTAGAGTACAAAAATTTCACCACGT 57.443 32.000 0.00 0.00 0.00 4.49
458 459 9.268268 CGACCGGGCATAATACAAATATATATT 57.732 33.333 8.76 1.91 0.00 1.28
459 460 8.644216 TCGACCGGGCATAATACAAATATATAT 58.356 33.333 8.76 0.00 0.00 0.86
460 461 8.009622 TCGACCGGGCATAATACAAATATATA 57.990 34.615 8.76 0.00 0.00 0.86
461 462 6.880484 TCGACCGGGCATAATACAAATATAT 58.120 36.000 8.76 0.00 0.00 0.86
462 463 6.283544 TCGACCGGGCATAATACAAATATA 57.716 37.500 8.76 0.00 0.00 0.86
463 464 5.155278 TCGACCGGGCATAATACAAATAT 57.845 39.130 8.76 0.00 0.00 1.28
464 465 4.603989 TCGACCGGGCATAATACAAATA 57.396 40.909 8.76 0.00 0.00 1.40
465 466 3.478857 TCGACCGGGCATAATACAAAT 57.521 42.857 8.76 0.00 0.00 2.32
466 467 2.983907 TCGACCGGGCATAATACAAA 57.016 45.000 8.76 0.00 0.00 2.83
467 468 2.983907 TTCGACCGGGCATAATACAA 57.016 45.000 8.76 0.00 0.00 2.41
468 469 4.281435 TCTTATTCGACCGGGCATAATACA 59.719 41.667 8.76 0.00 0.00 2.29
469 470 4.813027 TCTTATTCGACCGGGCATAATAC 58.187 43.478 8.76 0.00 0.00 1.89
470 471 5.670792 ATCTTATTCGACCGGGCATAATA 57.329 39.130 8.76 8.16 0.00 0.98
471 472 4.553330 ATCTTATTCGACCGGGCATAAT 57.447 40.909 8.76 9.32 0.00 1.28
472 473 4.345859 AATCTTATTCGACCGGGCATAA 57.654 40.909 8.76 3.70 0.00 1.90
473 474 4.345859 AAATCTTATTCGACCGGGCATA 57.654 40.909 8.76 0.00 0.00 3.14
474 475 2.930826 AATCTTATTCGACCGGGCAT 57.069 45.000 8.76 0.00 0.00 4.40
475 476 2.702592 AAATCTTATTCGACCGGGCA 57.297 45.000 8.76 0.00 0.00 5.36
476 477 4.753107 TGATTAAATCTTATTCGACCGGGC 59.247 41.667 6.32 0.00 0.00 6.13
477 478 7.435068 AATGATTAAATCTTATTCGACCGGG 57.565 36.000 6.32 0.00 0.00 5.73
478 479 7.323656 GCAAATGATTAAATCTTATTCGACCGG 59.676 37.037 0.00 0.00 0.00 5.28
479 480 7.323656 GGCAAATGATTAAATCTTATTCGACCG 59.676 37.037 0.00 0.00 0.00 4.79
480 481 8.352942 AGGCAAATGATTAAATCTTATTCGACC 58.647 33.333 0.00 0.00 0.00 4.79
481 482 9.387123 GAGGCAAATGATTAAATCTTATTCGAC 57.613 33.333 0.00 0.00 0.00 4.20
482 483 8.282592 CGAGGCAAATGATTAAATCTTATTCGA 58.717 33.333 0.00 0.00 0.00 3.71
483 484 8.070171 ACGAGGCAAATGATTAAATCTTATTCG 58.930 33.333 0.00 0.00 0.00 3.34
484 485 9.736023 AACGAGGCAAATGATTAAATCTTATTC 57.264 29.630 0.00 0.00 0.00 1.75
488 489 9.353999 GTAAAACGAGGCAAATGATTAAATCTT 57.646 29.630 0.00 0.00 0.00 2.40
495 496 5.469479 CCAAGTAAAACGAGGCAAATGATT 58.531 37.500 0.00 0.00 0.00 2.57
529 530 5.039333 GCATTGAGATAAAGCAGCGAAAAT 58.961 37.500 0.00 0.00 0.00 1.82
571 572 1.991264 GTCCTCGTAAAGCTTTCGTCC 59.009 52.381 16.57 1.63 0.00 4.79
573 574 1.668047 CCGTCCTCGTAAAGCTTTCGT 60.668 52.381 16.57 0.00 35.01 3.85
575 576 2.075979 ACCGTCCTCGTAAAGCTTTC 57.924 50.000 16.57 6.76 35.01 2.62
579 580 6.594284 AATAATAAACCGTCCTCGTAAAGC 57.406 37.500 0.00 0.00 35.01 3.51
580 581 8.749499 CACTAATAATAAACCGTCCTCGTAAAG 58.251 37.037 0.00 0.00 35.01 1.85
583 584 7.498900 TCTCACTAATAATAAACCGTCCTCGTA 59.501 37.037 0.00 0.00 35.01 3.43
614 615 7.333423 CCCGTTTTACTTCTCATCTATTCACAA 59.667 37.037 0.00 0.00 0.00 3.33
616 617 7.010275 GTCCCGTTTTACTTCTCATCTATTCAC 59.990 40.741 0.00 0.00 0.00 3.18
621 622 5.988310 TGTCCCGTTTTACTTCTCATCTA 57.012 39.130 0.00 0.00 0.00 1.98
631 642 5.232626 GGTTTGAACATTTGTCCCGTTTTAC 59.767 40.000 0.00 0.00 0.00 2.01
640 651 4.279659 GTCAGACGGTTTGAACATTTGTC 58.720 43.478 2.61 0.00 0.00 3.18
641 652 3.242608 CGTCAGACGGTTTGAACATTTGT 60.243 43.478 15.64 0.00 38.08 2.83
648 659 2.055838 CGATTCGTCAGACGGTTTGAA 58.944 47.619 22.66 9.64 42.81 2.69
654 665 0.109458 TCCAACGATTCGTCAGACGG 60.109 55.000 22.66 9.12 42.81 4.79
659 670 0.456142 CGAGCTCCAACGATTCGTCA 60.456 55.000 12.80 0.00 39.99 4.35
660 671 0.179171 TCGAGCTCCAACGATTCGTC 60.179 55.000 12.80 0.00 39.99 4.20
670 681 3.440173 CCTTGCTTTATTTTCGAGCTCCA 59.560 43.478 8.47 0.00 37.32 3.86
671 682 3.689649 TCCTTGCTTTATTTTCGAGCTCC 59.310 43.478 8.47 0.00 37.32 4.70
676 687 6.915843 GTCTGTTTTCCTTGCTTTATTTTCGA 59.084 34.615 0.00 0.00 0.00 3.71
677 688 6.918022 AGTCTGTTTTCCTTGCTTTATTTTCG 59.082 34.615 0.00 0.00 0.00 3.46
678 689 8.542953 CAAGTCTGTTTTCCTTGCTTTATTTTC 58.457 33.333 0.00 0.00 30.29 2.29
679 690 8.040727 ACAAGTCTGTTTTCCTTGCTTTATTTT 58.959 29.630 0.00 0.00 39.30 1.82
681 692 6.980397 CACAAGTCTGTTTTCCTTGCTTTATT 59.020 34.615 0.00 0.00 39.30 1.40
684 695 4.747810 CACAAGTCTGTTTTCCTTGCTTT 58.252 39.130 0.00 0.00 39.30 3.51
685 696 3.429410 GCACAAGTCTGTTTTCCTTGCTT 60.429 43.478 0.00 0.00 39.30 3.91
686 697 2.099756 GCACAAGTCTGTTTTCCTTGCT 59.900 45.455 0.00 0.00 39.30 3.91
687 698 2.159254 TGCACAAGTCTGTTTTCCTTGC 60.159 45.455 0.00 0.00 39.30 4.01
688 699 3.438360 GTGCACAAGTCTGTTTTCCTTG 58.562 45.455 13.17 0.00 41.02 3.61
701 724 2.052237 GAACACGGCGTGCACAAG 60.052 61.111 37.21 15.49 36.98 3.16
702 725 1.923227 TTTGAACACGGCGTGCACAA 61.923 50.000 37.21 34.21 36.98 3.33
703 726 1.923227 TTTTGAACACGGCGTGCACA 61.923 50.000 37.21 31.29 36.98 4.57
704 727 1.199852 CTTTTGAACACGGCGTGCAC 61.200 55.000 37.21 29.30 36.98 4.57
705 728 1.063327 CTTTTGAACACGGCGTGCA 59.937 52.632 37.21 25.65 36.98 4.57
706 729 1.657181 CCTTTTGAACACGGCGTGC 60.657 57.895 37.21 23.36 36.98 5.34
707 730 0.378962 TTCCTTTTGAACACGGCGTG 59.621 50.000 35.89 35.89 39.75 5.34
708 731 0.661020 CTTCCTTTTGAACACGGCGT 59.339 50.000 6.77 6.77 0.00 5.68
709 732 0.941542 TCTTCCTTTTGAACACGGCG 59.058 50.000 4.80 4.80 0.00 6.46
710 733 2.218603 TCTCTTCCTTTTGAACACGGC 58.781 47.619 0.00 0.00 0.00 5.68
711 734 3.728845 TCTCTCTTCCTTTTGAACACGG 58.271 45.455 0.00 0.00 0.00 4.94
712 735 5.734855 TTTCTCTCTTCCTTTTGAACACG 57.265 39.130 0.00 0.00 0.00 4.49
713 736 8.932945 AAATTTTCTCTCTTCCTTTTGAACAC 57.067 30.769 0.00 0.00 0.00 3.32
714 737 8.971073 AGAAATTTTCTCTCTTCCTTTTGAACA 58.029 29.630 5.82 0.00 34.07 3.18
715 738 9.242477 CAGAAATTTTCTCTCTTCCTTTTGAAC 57.758 33.333 8.71 0.00 38.11 3.18
716 739 7.922811 GCAGAAATTTTCTCTCTTCCTTTTGAA 59.077 33.333 8.71 0.00 38.11 2.69
717 740 7.068593 TGCAGAAATTTTCTCTCTTCCTTTTGA 59.931 33.333 8.71 0.00 38.11 2.69
718 741 7.205297 TGCAGAAATTTTCTCTCTTCCTTTTG 58.795 34.615 8.71 0.00 38.11 2.44
719 742 7.352079 TGCAGAAATTTTCTCTCTTCCTTTT 57.648 32.000 8.71 0.00 38.11 2.27
720 743 6.966534 TGCAGAAATTTTCTCTCTTCCTTT 57.033 33.333 8.71 0.00 38.11 3.11
721 744 6.015603 CCTTGCAGAAATTTTCTCTCTTCCTT 60.016 38.462 8.71 0.00 38.11 3.36
722 745 5.476254 CCTTGCAGAAATTTTCTCTCTTCCT 59.524 40.000 8.71 0.00 38.11 3.36
723 746 5.707931 CCTTGCAGAAATTTTCTCTCTTCC 58.292 41.667 8.71 0.00 38.11 3.46
724 747 5.159925 GCCTTGCAGAAATTTTCTCTCTTC 58.840 41.667 8.71 0.00 38.11 2.87
725 748 4.021632 GGCCTTGCAGAAATTTTCTCTCTT 60.022 41.667 8.71 0.00 38.11 2.85
726 749 3.509184 GGCCTTGCAGAAATTTTCTCTCT 59.491 43.478 8.71 0.00 38.11 3.10
727 750 3.671702 CGGCCTTGCAGAAATTTTCTCTC 60.672 47.826 8.71 5.11 38.11 3.20
728 751 2.229784 CGGCCTTGCAGAAATTTTCTCT 59.770 45.455 8.71 0.00 38.11 3.10
729 752 2.599659 CGGCCTTGCAGAAATTTTCTC 58.400 47.619 8.71 5.43 38.11 2.87
730 753 1.337167 GCGGCCTTGCAGAAATTTTCT 60.337 47.619 5.82 5.82 41.70 2.52
731 754 1.070821 GCGGCCTTGCAGAAATTTTC 58.929 50.000 0.00 0.66 34.15 2.29
732 755 0.392336 TGCGGCCTTGCAGAAATTTT 59.608 45.000 0.00 0.00 40.62 1.82
733 756 2.048601 TGCGGCCTTGCAGAAATTT 58.951 47.368 0.00 0.00 40.62 1.82
734 757 3.776158 TGCGGCCTTGCAGAAATT 58.224 50.000 0.00 0.00 40.62 1.82
741 764 4.487412 GATGCACTGCGGCCTTGC 62.487 66.667 14.18 14.18 36.76 4.01
742 765 3.818787 GGATGCACTGCGGCCTTG 61.819 66.667 0.00 0.00 0.00 3.61
743 766 3.984193 GAGGATGCACTGCGGCCTT 62.984 63.158 13.87 1.38 35.44 4.35
744 767 4.479993 GAGGATGCACTGCGGCCT 62.480 66.667 12.85 12.85 37.39 5.19
745 768 2.985512 CTAGAGGATGCACTGCGGCC 62.986 65.000 0.00 0.00 0.00 6.13
746 769 1.593750 CTAGAGGATGCACTGCGGC 60.594 63.158 0.00 0.00 0.00 6.53
760 783 0.970937 CGTGAAGGAGGGGTGCTAGA 60.971 60.000 0.00 0.00 0.00 2.43
763 786 2.526873 ACGTGAAGGAGGGGTGCT 60.527 61.111 0.00 0.00 0.00 4.40
764 787 2.358737 CACGTGAAGGAGGGGTGC 60.359 66.667 10.90 0.00 0.00 5.01
765 788 2.358737 GCACGTGAAGGAGGGGTG 60.359 66.667 22.23 0.00 0.00 4.61
766 789 2.741878 TAGGCACGTGAAGGAGGGGT 62.742 60.000 22.23 0.00 0.00 4.95
767 790 1.961180 CTAGGCACGTGAAGGAGGGG 61.961 65.000 22.23 0.00 0.00 4.79
768 791 1.258445 ACTAGGCACGTGAAGGAGGG 61.258 60.000 22.23 4.34 0.00 4.30
769 792 0.108615 CACTAGGCACGTGAAGGAGG 60.109 60.000 22.23 5.96 34.35 4.30
770 793 0.737715 GCACTAGGCACGTGAAGGAG 60.738 60.000 22.23 12.32 43.97 3.69
771 794 1.292223 GCACTAGGCACGTGAAGGA 59.708 57.895 22.23 0.00 43.97 3.36
772 795 3.876300 GCACTAGGCACGTGAAGG 58.124 61.111 22.23 8.17 43.97 3.46
803 826 1.205179 TGGCTGAATGAAATGCGCAAT 59.795 42.857 17.11 1.49 0.00 3.56
816 839 1.118965 TCCCGAACTGAGTGGCTGAA 61.119 55.000 0.00 0.00 0.00 3.02
817 840 1.118965 TTCCCGAACTGAGTGGCTGA 61.119 55.000 0.00 0.00 0.00 4.26
820 843 1.534729 ATTTTCCCGAACTGAGTGGC 58.465 50.000 0.00 0.00 0.00 5.01
821 844 3.684788 CAGTATTTTCCCGAACTGAGTGG 59.315 47.826 0.00 0.00 41.47 4.00
822 845 4.315803 ACAGTATTTTCCCGAACTGAGTG 58.684 43.478 8.21 0.00 41.47 3.51
838 891 2.020720 CGAGCTCAGTCAGGACAGTAT 58.979 52.381 15.40 0.00 0.00 2.12
839 892 1.454201 CGAGCTCAGTCAGGACAGTA 58.546 55.000 15.40 0.00 0.00 2.74
925 981 1.027255 GGAGCGAGGAAAAGGAAGCC 61.027 60.000 0.00 0.00 0.00 4.35
929 985 0.613777 GAAGGGAGCGAGGAAAAGGA 59.386 55.000 0.00 0.00 0.00 3.36
940 996 1.487142 GGAAGAGTAAGGGAAGGGAGC 59.513 57.143 0.00 0.00 0.00 4.70
978 1041 1.372997 CGACGGTGAGTCCCTGTTG 60.373 63.158 0.00 0.00 46.92 3.33
1098 1239 4.516195 GCTCCGCCTTCGTCTCCC 62.516 72.222 0.00 0.00 0.00 4.30
1107 1248 2.125106 GGAACGATTGCTCCGCCT 60.125 61.111 0.00 0.00 0.00 5.52
1110 1251 2.802667 CGCAGGAACGATTGCTCCG 61.803 63.158 0.00 0.00 35.41 4.63
1180 1324 3.123620 GAGCGGGCAGTGAAGCAG 61.124 66.667 0.00 0.00 35.83 4.24
1221 1365 1.671379 GCACGGAACCTGGAAGACC 60.671 63.158 0.00 0.00 34.07 3.85
1236 1380 1.620819 TGGAGGAAACAGAGAGAGCAC 59.379 52.381 0.00 0.00 0.00 4.40
1254 1873 0.032130 ATCGATCGACCGGATTGTGG 59.968 55.000 22.06 0.00 37.72 4.17
1259 1878 3.014604 GAAAGAATCGATCGACCGGAT 57.985 47.619 22.06 7.12 38.35 4.18
1480 2117 4.065281 ACGTACGTCTGGCAGGCC 62.065 66.667 16.72 2.62 0.00 5.19
1482 2119 2.809601 GCACGTACGTCTGGCAGG 60.810 66.667 19.94 6.61 0.00 4.85
1858 2534 2.204136 TCCACCAGGGCCATGTCT 60.204 61.111 17.55 0.00 36.21 3.41
1997 2682 1.215382 CGATGCGGGTGTTGAGAGA 59.785 57.895 0.00 0.00 0.00 3.10
1999 2684 1.080093 GTCGATGCGGGTGTTGAGA 60.080 57.895 0.00 0.00 0.00 3.27
2007 2692 0.598680 GGAGATCTTGTCGATGCGGG 60.599 60.000 0.00 0.00 30.84 6.13
2034 2719 1.322442 ACATCGATCGATCAGCAGGA 58.678 50.000 27.20 13.43 31.62 3.86
2037 2722 2.164422 GGGATACATCGATCGATCAGCA 59.836 50.000 27.20 12.85 39.74 4.41
2073 2771 3.465990 CAGACCATGGAGCACGATT 57.534 52.632 21.47 0.00 0.00 3.34
2180 2917 5.438698 TGCAACCTACTCTAGTCTAGTCT 57.561 43.478 6.77 0.00 0.00 3.24
2181 2918 5.591067 ACATGCAACCTACTCTAGTCTAGTC 59.409 44.000 6.77 0.00 0.00 2.59
2182 2919 5.511363 ACATGCAACCTACTCTAGTCTAGT 58.489 41.667 6.77 0.00 0.00 2.57
2183 2920 6.269315 CAACATGCAACCTACTCTAGTCTAG 58.731 44.000 0.00 0.00 0.00 2.43
2184 2921 5.127194 CCAACATGCAACCTACTCTAGTCTA 59.873 44.000 0.00 0.00 0.00 2.59
2197 2934 1.080298 GGAGCAGCCAACATGCAAC 60.080 57.895 0.00 0.00 46.31 4.17
2273 3010 2.437897 CTGCCCCTTCCAGCACTT 59.562 61.111 0.00 0.00 34.68 3.16
2300 3067 2.607750 GGAGTGGCTGAGGGGTGA 60.608 66.667 0.00 0.00 0.00 4.02
2301 3068 4.087892 CGGAGTGGCTGAGGGGTG 62.088 72.222 0.00 0.00 0.00 4.61
2302 3069 4.316823 TCGGAGTGGCTGAGGGGT 62.317 66.667 0.00 0.00 0.00 4.95
2303 3070 3.465403 CTCGGAGTGGCTGAGGGG 61.465 72.222 0.00 0.00 44.73 4.79
2318 3085 3.247006 TCTTTATGGTCCTTGTCGCTC 57.753 47.619 0.00 0.00 0.00 5.03
2320 3087 5.585047 ACTTTATCTTTATGGTCCTTGTCGC 59.415 40.000 0.00 0.00 0.00 5.19
2321 3088 6.816640 TGACTTTATCTTTATGGTCCTTGTCG 59.183 38.462 0.00 0.00 0.00 4.35
2322 3089 8.738645 ATGACTTTATCTTTATGGTCCTTGTC 57.261 34.615 0.00 0.00 0.00 3.18
2324 3091 8.737168 TGATGACTTTATCTTTATGGTCCTTG 57.263 34.615 0.00 0.00 0.00 3.61
2325 3092 9.566432 GATGATGACTTTATCTTTATGGTCCTT 57.434 33.333 0.00 0.00 0.00 3.36
2333 3100 8.577296 CGGAGGTAGATGATGACTTTATCTTTA 58.423 37.037 1.62 0.00 33.51 1.85
2334 3101 7.070074 ACGGAGGTAGATGATGACTTTATCTTT 59.930 37.037 1.62 0.00 33.51 2.52
2335 3102 6.551601 ACGGAGGTAGATGATGACTTTATCTT 59.448 38.462 1.62 0.00 33.51 2.40
2336 3103 6.071984 ACGGAGGTAGATGATGACTTTATCT 58.928 40.000 1.92 1.92 35.49 1.98
2337 3104 6.334102 ACGGAGGTAGATGATGACTTTATC 57.666 41.667 0.00 0.00 0.00 1.75
2338 3105 5.048643 CGACGGAGGTAGATGATGACTTTAT 60.049 44.000 0.00 0.00 0.00 1.40
2339 3106 4.275196 CGACGGAGGTAGATGATGACTTTA 59.725 45.833 0.00 0.00 0.00 1.85
2340 3107 3.066900 CGACGGAGGTAGATGATGACTTT 59.933 47.826 0.00 0.00 0.00 2.66
2341 3108 2.619177 CGACGGAGGTAGATGATGACTT 59.381 50.000 0.00 0.00 0.00 3.01
2342 3109 2.222886 CGACGGAGGTAGATGATGACT 58.777 52.381 0.00 0.00 0.00 3.41
2398 3165 1.538047 GTCAAGAAAGCTGCCCATGA 58.462 50.000 0.00 0.00 0.00 3.07
2401 3168 0.112995 ATGGTCAAGAAAGCTGCCCA 59.887 50.000 0.00 0.00 0.00 5.36
2412 3179 0.725686 CGAGCAGCAAGATGGTCAAG 59.274 55.000 16.33 0.00 45.78 3.02
2413 3180 0.674581 CCGAGCAGCAAGATGGTCAA 60.675 55.000 16.33 0.00 45.78 3.18
2414 3181 1.078918 CCGAGCAGCAAGATGGTCA 60.079 57.895 16.33 0.00 45.78 4.02
2415 3182 2.467826 GCCGAGCAGCAAGATGGTC 61.468 63.158 7.39 7.39 42.83 4.02
2416 3183 2.437359 GCCGAGCAGCAAGATGGT 60.437 61.111 0.00 0.00 0.00 3.55
2417 3184 3.207669 GGCCGAGCAGCAAGATGG 61.208 66.667 0.00 0.00 0.00 3.51
2418 3185 3.207669 GGGCCGAGCAGCAAGATG 61.208 66.667 0.00 0.00 0.00 2.90
2419 3186 4.496336 GGGGCCGAGCAGCAAGAT 62.496 66.667 0.00 0.00 0.00 2.40
2447 3214 1.499056 GCATGTCTCGCCACACAAG 59.501 57.895 0.00 0.00 0.00 3.16
2490 3503 2.845363 TCACTGAAGCAGCAAGATGA 57.155 45.000 0.00 0.00 34.37 2.92
2571 3584 4.766404 ATTTTCTGTTTTGCTCCCTACG 57.234 40.909 0.00 0.00 0.00 3.51
2585 3598 6.263516 ACTCACACCATCATCAATTTTCTG 57.736 37.500 0.00 0.00 0.00 3.02
2599 3612 1.684450 TCGCTCTGTTAACTCACACCA 59.316 47.619 7.22 0.00 0.00 4.17
2903 3933 3.887621 ACACGAAGGCTGAAGCTATTA 57.112 42.857 1.74 0.00 41.70 0.98
2904 3934 2.770164 ACACGAAGGCTGAAGCTATT 57.230 45.000 1.74 0.00 41.70 1.73
2920 3950 6.363896 CGTGGGGAAAAATATGTTTGTAACAC 59.636 38.462 0.00 0.00 45.50 3.32
2924 3954 6.896021 TTCGTGGGGAAAAATATGTTTGTA 57.104 33.333 0.00 0.00 0.00 2.41
2939 3969 6.457799 GCAACTACACTTATAAATTCGTGGGG 60.458 42.308 7.31 3.09 0.00 4.96
2963 3994 8.589629 CAGCAATAGATTGAAATTTGTGTAAGC 58.410 33.333 6.43 0.00 40.14 3.09
2967 3998 6.996509 ACCAGCAATAGATTGAAATTTGTGT 58.003 32.000 6.43 0.00 40.14 3.72
2980 4011 3.455910 AGATGTAGCCAACCAGCAATAGA 59.544 43.478 0.00 0.00 34.23 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.