Multiple sequence alignment - TraesCS3B01G078200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G078200 chr3B 100.000 2519 0 0 1 2519 49425638 49428156 0.000000e+00 4652.0
1 TraesCS3B01G078200 chr3B 97.962 785 13 2 1736 2519 49467094 49467876 0.000000e+00 1358.0
2 TraesCS3B01G078200 chr3B 97.834 785 15 2 1736 2519 49518966 49519749 0.000000e+00 1354.0
3 TraesCS3B01G078200 chr3B 97.205 787 19 2 1736 2519 49629354 49630140 0.000000e+00 1328.0
4 TraesCS3B01G078200 chr3B 96.582 790 19 6 1736 2519 49568956 49569743 0.000000e+00 1303.0
5 TraesCS3B01G078200 chr3B 91.688 397 30 3 1141 1537 49466677 49467070 4.740000e-152 547.0
6 TraesCS3B01G078200 chr3B 91.688 397 30 3 1141 1537 49568539 49568932 4.740000e-152 547.0
7 TraesCS3B01G078200 chr3B 91.436 397 30 4 1141 1537 49628938 49629330 2.200000e-150 542.0
8 TraesCS3B01G078200 chr3B 89.474 304 28 4 1141 1443 49516471 49516771 5.080000e-102 381.0
9 TraesCS3B01G078200 chr3B 84.775 289 23 13 746 1029 49568200 49568472 1.150000e-68 270.0
10 TraesCS3B01G078200 chr3B 84.429 289 24 13 746 1029 49466338 49466610 5.340000e-67 265.0
11 TraesCS3B01G078200 chr3B 84.083 289 25 13 746 1029 49516132 49516404 2.490000e-65 259.0
12 TraesCS3B01G078200 chr3B 84.083 289 25 13 746 1029 49628599 49628871 2.490000e-65 259.0
13 TraesCS3B01G078200 chr3B 97.196 107 3 0 1431 1537 49518836 49518942 5.540000e-42 182.0
14 TraesCS3B01G078200 chr3B 87.097 124 10 3 1118 1238 49466609 49466729 4.370000e-28 135.0
15 TraesCS3B01G078200 chr3B 87.097 124 10 3 1118 1238 49516403 49516523 4.370000e-28 135.0
16 TraesCS3B01G078200 chr3B 85.185 81 6 5 1718 1794 49427219 49427297 7.470000e-11 78.7
17 TraesCS3B01G078200 chr3B 85.185 81 6 5 1582 1660 49427355 49427431 7.470000e-11 78.7
18 TraesCS3B01G078200 chr3B 85.542 83 1 3 1579 1660 49467081 49467153 2.690000e-10 76.8
19 TraesCS3B01G078200 chr3B 85.542 83 1 3 1579 1660 49518953 49519025 2.690000e-10 76.8
20 TraesCS3B01G078200 chr3B 79.130 115 12 10 474 582 49426038 49426146 4.500000e-08 69.4
21 TraesCS3B01G078200 chr3B 79.130 115 12 10 401 509 49426111 49426219 4.500000e-08 69.4
22 TraesCS3B01G078200 chr3D 92.807 431 17 3 1225 1654 28991664 28992081 1.660000e-171 612.0
23 TraesCS3B01G078200 chr3D 92.857 392 23 3 842 1229 28991314 28991704 4.700000e-157 564.0
24 TraesCS3B01G078200 chr3D 86.327 373 33 7 50 406 28990173 28990543 8.450000e-105 390.0
25 TraesCS3B01G078200 chr3D 92.453 265 15 2 1736 1995 28992028 28992292 8.510000e-100 374.0
26 TraesCS3B01G078200 chr3A 88.958 480 42 7 755 1229 38371171 38371644 1.300000e-162 582.0
27 TraesCS3B01G078200 chr3A 88.182 440 28 9 1224 1654 38371603 38372027 1.040000e-138 503.0
28 TraesCS3B01G078200 chr3A 91.364 220 13 3 1654 1871 38371896 38372111 1.890000e-76 296.0
29 TraesCS3B01G078200 chr7B 79.129 551 44 25 743 1236 586742779 586743315 5.230000e-82 315.0
30 TraesCS3B01G078200 chr7B 85.714 133 7 6 839 961 621289712 621289842 2.030000e-26 130.0
31 TraesCS3B01G078200 chr7B 95.918 49 2 0 839 887 621289000 621289048 2.080000e-11 80.5
32 TraesCS3B01G078200 chr7B 90.000 50 3 1 970 1019 697958408 697958361 2.090000e-06 63.9
33 TraesCS3B01G078200 chr7B 90.000 50 3 1 970 1019 698191364 698191317 2.090000e-06 63.9
34 TraesCS3B01G078200 chrUn 85.185 81 10 2 1084 1163 316289151 316289230 5.780000e-12 82.4
35 TraesCS3B01G078200 chrUn 90.000 50 3 1 970 1019 170419352 170419305 2.090000e-06 63.9
36 TraesCS3B01G078200 chr6B 85.185 81 10 2 1084 1163 660275774 660275853 5.780000e-12 82.4
37 TraesCS3B01G078200 chr6A 90.909 55 5 0 1109 1163 585006888 585006942 9.660000e-10 75.0
38 TraesCS3B01G078200 chr7D 97.619 42 1 0 944 985 584773179 584773138 3.480000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G078200 chr3B 49425638 49428156 2518 False 989.640000 4652 85.726000 1 2519 5 chr3B.!!$F1 2518
1 TraesCS3B01G078200 chr3B 49628599 49630140 1541 False 709.666667 1328 90.908000 746 2519 3 chr3B.!!$F5 1773
2 TraesCS3B01G078200 chr3B 49568200 49569743 1543 False 706.666667 1303 91.015000 746 2519 3 chr3B.!!$F4 1773
3 TraesCS3B01G078200 chr3B 49466338 49467876 1538 False 476.360000 1358 89.343600 746 2519 5 chr3B.!!$F2 1773
4 TraesCS3B01G078200 chr3B 49516132 49519749 3617 False 397.966667 1354 90.204333 746 2519 6 chr3B.!!$F3 1773
5 TraesCS3B01G078200 chr3D 28990173 28992292 2119 False 485.000000 612 91.111000 50 1995 4 chr3D.!!$F1 1945
6 TraesCS3B01G078200 chr3A 38371171 38372111 940 False 460.333333 582 89.501333 755 1871 3 chr3A.!!$F1 1116
7 TraesCS3B01G078200 chr7B 586742779 586743315 536 False 315.000000 315 79.129000 743 1236 1 chr7B.!!$F1 493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.033642 GCATACCCTCCTAGGCGTTC 59.966 60.0 2.96 0.0 32.73 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1666 4385 0.106669 ATCCTCGATCCCAGTCGTCA 60.107 55.0 0.0 0.0 42.07 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.378710 GCAAGTTGTAGTCTTTCTTTTCCT 57.621 37.500 4.48 0.00 0.00 3.36
24 25 6.796426 GCAAGTTGTAGTCTTTCTTTTCCTT 58.204 36.000 4.48 0.00 0.00 3.36
25 26 7.258441 GCAAGTTGTAGTCTTTCTTTTCCTTT 58.742 34.615 4.48 0.00 0.00 3.11
26 27 7.432545 GCAAGTTGTAGTCTTTCTTTTCCTTTC 59.567 37.037 4.48 0.00 0.00 2.62
27 28 8.678199 CAAGTTGTAGTCTTTCTTTTCCTTTCT 58.322 33.333 0.00 0.00 0.00 2.52
28 29 8.809468 AGTTGTAGTCTTTCTTTTCCTTTCTT 57.191 30.769 0.00 0.00 0.00 2.52
29 30 9.901172 AGTTGTAGTCTTTCTTTTCCTTTCTTA 57.099 29.630 0.00 0.00 0.00 2.10
42 43 9.261180 CTTTTCCTTTCTTAATTTGGAAAGTCC 57.739 33.333 20.91 0.00 44.34 3.85
43 44 8.547481 TTTCCTTTCTTAATTTGGAAAGTCCT 57.453 30.769 20.91 0.00 43.79 3.85
44 45 7.761038 TCCTTTCTTAATTTGGAAAGTCCTC 57.239 36.000 20.91 0.00 43.79 3.71
45 46 6.430000 TCCTTTCTTAATTTGGAAAGTCCTCG 59.570 38.462 20.91 11.86 43.79 4.63
46 47 6.206829 CCTTTCTTAATTTGGAAAGTCCTCGT 59.793 38.462 20.91 0.00 43.79 4.18
47 48 6.554334 TTCTTAATTTGGAAAGTCCTCGTG 57.446 37.500 0.00 0.00 37.46 4.35
48 49 5.617252 TCTTAATTTGGAAAGTCCTCGTGT 58.383 37.500 0.00 0.00 37.46 4.49
54 55 4.884668 TGGAAAGTCCTCGTGTTATTCT 57.115 40.909 0.00 0.00 37.46 2.40
55 56 4.566004 TGGAAAGTCCTCGTGTTATTCTG 58.434 43.478 0.00 0.00 37.46 3.02
57 58 3.678056 AAGTCCTCGTGTTATTCTGCA 57.322 42.857 0.00 0.00 0.00 4.41
66 67 1.070914 TGTTATTCTGCACGTGGGTCA 59.929 47.619 18.88 5.91 0.00 4.02
68 69 0.973632 TATTCTGCACGTGGGTCACT 59.026 50.000 18.88 0.00 31.34 3.41
69 70 0.603707 ATTCTGCACGTGGGTCACTG 60.604 55.000 18.88 4.24 31.34 3.66
83 84 0.530744 TCACTGGATAGCGACCACAC 59.469 55.000 0.00 0.00 33.57 3.82
103 104 0.033642 GCATACCCTCCTAGGCGTTC 59.966 60.000 2.96 0.00 32.73 3.95
108 109 0.465097 CCCTCCTAGGCGTTCGTAGA 60.465 60.000 2.96 0.00 33.67 2.59
109 110 1.606903 CCTCCTAGGCGTTCGTAGAT 58.393 55.000 2.96 0.00 35.04 1.98
112 114 0.314302 CCTAGGCGTTCGTAGATGGG 59.686 60.000 0.00 0.00 35.04 4.00
115 117 2.588034 GCGTTCGTAGATGGGCCC 60.588 66.667 17.59 17.59 35.04 5.80
116 118 2.897207 CGTTCGTAGATGGGCCCA 59.103 61.111 30.92 30.92 35.04 5.36
118 120 0.179056 CGTTCGTAGATGGGCCCATT 60.179 55.000 37.69 27.05 36.70 3.16
119 121 1.308998 GTTCGTAGATGGGCCCATTG 58.691 55.000 37.69 25.69 36.70 2.82
131 133 0.811281 GCCCATTGTTCTTTCTCCCG 59.189 55.000 0.00 0.00 0.00 5.14
134 136 1.732259 CCATTGTTCTTTCTCCCGTCG 59.268 52.381 0.00 0.00 0.00 5.12
171 173 6.439636 TTGATTATAGAACCATCCCTCCAG 57.560 41.667 0.00 0.00 0.00 3.86
177 179 2.043526 AGAACCATCCCTCCAGCAATTT 59.956 45.455 0.00 0.00 0.00 1.82
178 180 3.269381 AGAACCATCCCTCCAGCAATTTA 59.731 43.478 0.00 0.00 0.00 1.40
183 198 6.201591 ACCATCCCTCCAGCAATTTATTTTA 58.798 36.000 0.00 0.00 0.00 1.52
207 222 9.667107 TTACTGATTTTATAAGTGTTCTCCTGG 57.333 33.333 0.00 0.00 0.00 4.45
346 363 5.890424 TGGAAATCCGTGTCTTTAATTCC 57.110 39.130 0.00 0.00 39.43 3.01
412 429 6.455360 TTTGGATTCACAAATATGAGAGCC 57.545 37.500 0.00 0.00 35.57 4.70
413 430 5.378230 TGGATTCACAAATATGAGAGCCT 57.622 39.130 0.00 0.00 0.00 4.58
414 431 5.759059 TGGATTCACAAATATGAGAGCCTT 58.241 37.500 0.00 0.00 0.00 4.35
415 432 6.899089 TGGATTCACAAATATGAGAGCCTTA 58.101 36.000 0.00 0.00 0.00 2.69
416 433 7.520798 TGGATTCACAAATATGAGAGCCTTAT 58.479 34.615 0.00 0.00 0.00 1.73
417 434 8.000709 TGGATTCACAAATATGAGAGCCTTATT 58.999 33.333 0.00 0.00 0.00 1.40
500 610 9.649167 AATTTGAGAGCCTTATTTTGAATTCAG 57.351 29.630 8.41 0.00 0.00 3.02
501 611 6.764308 TGAGAGCCTTATTTTGAATTCAGG 57.236 37.500 8.41 6.52 0.00 3.86
502 612 6.484288 TGAGAGCCTTATTTTGAATTCAGGA 58.516 36.000 8.41 1.83 0.00 3.86
503 613 6.947733 TGAGAGCCTTATTTTGAATTCAGGAA 59.052 34.615 8.41 8.33 0.00 3.36
504 614 7.616935 TGAGAGCCTTATTTTGAATTCAGGAAT 59.383 33.333 17.75 17.75 0.00 3.01
505 615 9.125026 GAGAGCCTTATTTTGAATTCAGGAATA 57.875 33.333 8.41 13.47 0.00 1.75
506 616 9.652114 AGAGCCTTATTTTGAATTCAGGAATAT 57.348 29.630 18.96 10.02 0.00 1.28
585 696 6.870965 TGTTTTGAATTCGTGAATATTTGGGG 59.129 34.615 0.04 0.00 0.00 4.96
590 701 6.379703 TGAATTCGTGAATATTTGGGGACATT 59.620 34.615 0.04 0.00 42.32 2.71
604 715 5.960113 TGGGGACATTATTTTGAATTGACG 58.040 37.500 0.00 0.00 33.40 4.35
605 716 5.712446 TGGGGACATTATTTTGAATTGACGA 59.288 36.000 0.00 0.00 33.40 4.20
626 737 7.040755 TGACGAACATTTTCTGGACACAAATAT 60.041 33.333 0.00 0.00 0.00 1.28
663 775 8.647143 ATGAACGTTCTTTGAAAATTCATGTT 57.353 26.923 27.32 0.00 37.00 2.71
665 777 8.930760 TGAACGTTCTTTGAAAATTCATGTTTT 58.069 25.926 27.32 0.00 37.00 2.43
687 799 6.439675 TTTTTAGCAGTCGTAGGTTTTGTT 57.560 33.333 0.00 0.00 0.00 2.83
688 800 6.439675 TTTTAGCAGTCGTAGGTTTTGTTT 57.560 33.333 0.00 0.00 0.00 2.83
689 801 6.439675 TTTAGCAGTCGTAGGTTTTGTTTT 57.560 33.333 0.00 0.00 0.00 2.43
690 802 4.547406 AGCAGTCGTAGGTTTTGTTTTC 57.453 40.909 0.00 0.00 0.00 2.29
691 803 4.196971 AGCAGTCGTAGGTTTTGTTTTCT 58.803 39.130 0.00 0.00 0.00 2.52
692 804 4.638865 AGCAGTCGTAGGTTTTGTTTTCTT 59.361 37.500 0.00 0.00 0.00 2.52
693 805 5.124936 AGCAGTCGTAGGTTTTGTTTTCTTT 59.875 36.000 0.00 0.00 0.00 2.52
694 806 5.454554 GCAGTCGTAGGTTTTGTTTTCTTTC 59.545 40.000 0.00 0.00 0.00 2.62
695 807 6.677187 GCAGTCGTAGGTTTTGTTTTCTTTCT 60.677 38.462 0.00 0.00 0.00 2.52
696 808 7.466320 GCAGTCGTAGGTTTTGTTTTCTTTCTA 60.466 37.037 0.00 0.00 0.00 2.10
697 809 7.849515 CAGTCGTAGGTTTTGTTTTCTTTCTAC 59.150 37.037 0.00 0.00 0.00 2.59
701 813 9.563898 CGTAGGTTTTGTTTTCTTTCTACTTTT 57.436 29.630 0.00 0.00 0.00 2.27
793 1225 1.971695 GAAAGAAGTGGTGGGGCCG 60.972 63.158 0.00 0.00 41.21 6.13
816 1257 0.523072 CAAGCCCAGACCAATGAACG 59.477 55.000 0.00 0.00 0.00 3.95
817 1258 0.400213 AAGCCCAGACCAATGAACGA 59.600 50.000 0.00 0.00 0.00 3.85
818 1259 0.036010 AGCCCAGACCAATGAACGAG 60.036 55.000 0.00 0.00 0.00 4.18
819 1260 0.321653 GCCCAGACCAATGAACGAGT 60.322 55.000 0.00 0.00 0.00 4.18
820 1261 1.066430 GCCCAGACCAATGAACGAGTA 60.066 52.381 0.00 0.00 0.00 2.59
821 1262 2.893637 CCCAGACCAATGAACGAGTAG 58.106 52.381 0.00 0.00 0.00 2.57
1056 1651 2.674754 GGCGTTCCCTTCATCCCA 59.325 61.111 0.00 0.00 0.00 4.37
1057 1652 1.227383 GGCGTTCCCTTCATCCCAT 59.773 57.895 0.00 0.00 0.00 4.00
1058 1653 0.819666 GGCGTTCCCTTCATCCCATC 60.820 60.000 0.00 0.00 0.00 3.51
1059 1654 1.160329 GCGTTCCCTTCATCCCATCG 61.160 60.000 0.00 0.00 0.00 3.84
1060 1655 1.160329 CGTTCCCTTCATCCCATCGC 61.160 60.000 0.00 0.00 0.00 4.58
1061 1656 0.181350 GTTCCCTTCATCCCATCGCT 59.819 55.000 0.00 0.00 0.00 4.93
1062 1657 0.469917 TTCCCTTCATCCCATCGCTC 59.530 55.000 0.00 0.00 0.00 5.03
1063 1658 1.072159 CCCTTCATCCCATCGCTCC 59.928 63.158 0.00 0.00 0.00 4.70
1064 1659 1.699054 CCCTTCATCCCATCGCTCCA 61.699 60.000 0.00 0.00 0.00 3.86
1065 1660 0.250209 CCTTCATCCCATCGCTCCAG 60.250 60.000 0.00 0.00 0.00 3.86
1066 1661 0.250209 CTTCATCCCATCGCTCCAGG 60.250 60.000 0.00 0.00 0.00 4.45
1067 1662 2.281345 CATCCCATCGCTCCAGGC 60.281 66.667 0.00 0.00 37.64 4.85
1080 1675 4.200283 CAGGCGGAGGAGCTCGTC 62.200 72.222 24.90 24.90 37.29 4.20
1081 1676 4.742649 AGGCGGAGGAGCTCGTCA 62.743 66.667 31.29 0.00 37.29 4.35
1082 1677 4.200283 GGCGGAGGAGCTCGTCAG 62.200 72.222 31.29 28.57 37.29 3.51
1083 1678 4.200283 GCGGAGGAGCTCGTCAGG 62.200 72.222 31.29 23.99 32.79 3.86
1084 1679 3.522731 CGGAGGAGCTCGTCAGGG 61.523 72.222 31.29 18.85 32.79 4.45
1085 1680 3.844090 GGAGGAGCTCGTCAGGGC 61.844 72.222 31.29 14.79 46.47 5.19
1109 1704 3.210528 GGAGGAGGCGTCGTCGAT 61.211 66.667 19.40 0.00 38.30 3.59
1110 1705 2.328639 GAGGAGGCGTCGTCGATC 59.671 66.667 12.73 2.78 39.71 3.69
1111 1706 3.509296 GAGGAGGCGTCGTCGATCG 62.509 68.421 9.36 9.36 39.71 3.69
1112 1707 3.873883 GGAGGCGTCGTCGATCGT 61.874 66.667 15.94 5.93 40.80 3.73
1113 1708 2.350985 GAGGCGTCGTCGATCGTC 60.351 66.667 15.94 8.82 40.80 4.20
1114 1709 3.092192 GAGGCGTCGTCGATCGTCA 62.092 63.158 15.94 0.00 40.80 4.35
1115 1710 2.202388 GGCGTCGTCGATCGTCAA 60.202 61.111 15.94 0.00 40.80 3.18
1116 1711 2.215604 GGCGTCGTCGATCGTCAAG 61.216 63.158 15.94 5.36 40.80 3.02
1117 1712 2.215604 GCGTCGTCGATCGTCAAGG 61.216 63.158 15.94 1.52 40.80 3.61
1118 1713 2.215604 CGTCGTCGATCGTCAAGGC 61.216 63.158 15.94 5.78 40.80 4.35
1119 1714 1.136984 GTCGTCGATCGTCAAGGCT 59.863 57.895 15.94 0.00 40.80 4.58
1152 1747 1.458588 GAGGAAGGCGGAGGAGGAT 60.459 63.158 0.00 0.00 0.00 3.24
1213 1853 1.973812 GAGGCAGCTTTCACCACCC 60.974 63.158 0.00 0.00 0.00 4.61
1226 1866 2.538141 CCACCCTCAAGGCCAAGGA 61.538 63.158 17.88 5.73 40.58 3.36
1253 1893 4.825252 GGCGCCGGTCACCGTAAT 62.825 66.667 16.87 0.00 46.80 1.89
1258 1898 2.512974 CGGTCACCGTAATGGCCC 60.513 66.667 8.54 0.00 41.70 5.80
1459 4178 1.353358 TGAAGTGGAGGGACTACTCGA 59.647 52.381 0.00 0.00 42.22 4.04
1462 4181 0.323178 GTGGAGGGACTACTCGACCA 60.323 60.000 0.00 0.00 42.22 4.02
1537 4256 6.526222 GTGTGAGATTGTAATTTGACGACTC 58.474 40.000 0.00 0.00 0.00 3.36
1538 4257 5.344933 TGTGAGATTGTAATTTGACGACTCG 59.655 40.000 0.00 0.00 0.00 4.18
1539 4258 5.571741 GTGAGATTGTAATTTGACGACTCGA 59.428 40.000 5.20 0.00 0.00 4.04
1540 4259 5.571741 TGAGATTGTAATTTGACGACTCGAC 59.428 40.000 5.20 0.00 0.00 4.20
1541 4260 5.710984 AGATTGTAATTTGACGACTCGACT 58.289 37.500 5.20 0.00 0.00 4.18
1548 4267 1.226717 GACGACTCGACTGGGATGC 60.227 63.158 5.20 0.00 0.00 3.91
1592 4311 7.039363 GCTTCCTTCTATACCTCATGTAGTGAT 60.039 40.741 0.00 0.00 35.97 3.06
1593 4312 9.521841 CTTCCTTCTATACCTCATGTAGTGATA 57.478 37.037 0.00 0.00 35.97 2.15
1604 4323 9.154632 ACCTCATGTAGTGATATATACCAAACA 57.845 33.333 0.00 0.00 35.97 2.83
1605 4324 9.996554 CCTCATGTAGTGATATATACCAAACAA 57.003 33.333 0.00 0.00 35.97 2.83
1632 4351 9.056005 TCAATTGTATTATTGTACAGATCCTGC 57.944 33.333 5.13 0.00 36.08 4.85
1633 4352 8.839343 CAATTGTATTATTGTACAGATCCTGCA 58.161 33.333 0.00 0.00 36.08 4.41
1634 4353 8.978874 ATTGTATTATTGTACAGATCCTGCAA 57.021 30.769 0.00 0.00 36.08 4.08
1635 4354 8.800370 TTGTATTATTGTACAGATCCTGCAAA 57.200 30.769 0.00 0.00 36.08 3.68
1636 4355 8.800370 TGTATTATTGTACAGATCCTGCAAAA 57.200 30.769 0.00 0.00 34.37 2.44
1637 4356 9.237187 TGTATTATTGTACAGATCCTGCAAAAA 57.763 29.630 0.00 0.00 34.37 1.94
1655 4374 4.538746 AAAAACGGTTCACCCTTTTTGA 57.461 36.364 14.16 0.00 42.18 2.69
1656 4375 4.746535 AAAACGGTTCACCCTTTTTGAT 57.253 36.364 0.00 0.00 41.64 2.57
1657 4376 5.855740 AAAACGGTTCACCCTTTTTGATA 57.144 34.783 0.00 0.00 41.64 2.15
1658 4377 6.413783 AAAACGGTTCACCCTTTTTGATAT 57.586 33.333 0.00 0.00 41.64 1.63
1659 4378 6.413783 AAACGGTTCACCCTTTTTGATATT 57.586 33.333 0.00 0.00 30.89 1.28
1660 4379 5.385509 ACGGTTCACCCTTTTTGATATTG 57.614 39.130 0.00 0.00 0.00 1.90
1661 4380 4.830600 ACGGTTCACCCTTTTTGATATTGT 59.169 37.500 0.00 0.00 0.00 2.71
1662 4381 6.005198 ACGGTTCACCCTTTTTGATATTGTA 58.995 36.000 0.00 0.00 0.00 2.41
1663 4382 6.490721 ACGGTTCACCCTTTTTGATATTGTAA 59.509 34.615 0.00 0.00 0.00 2.41
1664 4383 7.177744 ACGGTTCACCCTTTTTGATATTGTAAT 59.822 33.333 0.00 0.00 0.00 1.89
1665 4384 8.032451 CGGTTCACCCTTTTTGATATTGTAATT 58.968 33.333 0.00 0.00 0.00 1.40
1666 4385 9.719355 GGTTCACCCTTTTTGATATTGTAATTT 57.281 29.630 0.00 0.00 0.00 1.82
1669 4388 9.921637 TCACCCTTTTTGATATTGTAATTTGAC 57.078 29.630 0.00 0.00 0.00 3.18
1670 4389 8.859156 CACCCTTTTTGATATTGTAATTTGACG 58.141 33.333 0.00 0.00 0.00 4.35
1671 4390 8.798402 ACCCTTTTTGATATTGTAATTTGACGA 58.202 29.630 0.00 0.00 0.00 4.20
1672 4391 9.072294 CCCTTTTTGATATTGTAATTTGACGAC 57.928 33.333 0.00 0.00 0.00 4.34
1673 4392 9.840427 CCTTTTTGATATTGTAATTTGACGACT 57.160 29.630 0.00 0.00 0.00 4.18
1675 4394 9.619316 TTTTTGATATTGTAATTTGACGACTGG 57.381 29.630 0.00 0.00 0.00 4.00
1676 4395 6.918892 TGATATTGTAATTTGACGACTGGG 57.081 37.500 0.00 0.00 0.00 4.45
1677 4396 6.645306 TGATATTGTAATTTGACGACTGGGA 58.355 36.000 0.00 0.00 0.00 4.37
1678 4397 7.279615 TGATATTGTAATTTGACGACTGGGAT 58.720 34.615 0.00 0.00 0.00 3.85
1679 4398 7.441157 TGATATTGTAATTTGACGACTGGGATC 59.559 37.037 0.00 0.00 0.00 3.36
1714 4433 6.774673 TGGATAGATGTTAGTGTCAAAACCA 58.225 36.000 0.00 0.00 0.00 3.67
2198 4929 4.568152 ATTGTGTGCAACTTTAGTGTCC 57.432 40.909 0.00 0.00 37.44 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.378710 AGGAAAAGAAAGACTACAACTTGC 57.621 37.500 0.00 0.00 0.00 4.01
23 24 6.544564 ACACGAGGACTTTCCAAATTAAGAAA 59.455 34.615 0.00 3.56 39.61 2.52
24 25 6.059484 ACACGAGGACTTTCCAAATTAAGAA 58.941 36.000 0.00 0.00 39.61 2.52
25 26 5.617252 ACACGAGGACTTTCCAAATTAAGA 58.383 37.500 0.00 0.00 39.61 2.10
26 27 5.941948 ACACGAGGACTTTCCAAATTAAG 57.058 39.130 0.00 0.00 39.61 1.85
27 28 7.989416 ATAACACGAGGACTTTCCAAATTAA 57.011 32.000 0.00 0.00 39.61 1.40
28 29 7.881232 AGAATAACACGAGGACTTTCCAAATTA 59.119 33.333 0.00 0.00 39.61 1.40
29 30 6.715264 AGAATAACACGAGGACTTTCCAAATT 59.285 34.615 0.00 0.00 39.61 1.82
30 31 6.149474 CAGAATAACACGAGGACTTTCCAAAT 59.851 38.462 0.00 0.00 39.61 2.32
31 32 5.468746 CAGAATAACACGAGGACTTTCCAAA 59.531 40.000 0.00 0.00 39.61 3.28
32 33 4.994852 CAGAATAACACGAGGACTTTCCAA 59.005 41.667 0.00 0.00 39.61 3.53
33 34 4.566004 CAGAATAACACGAGGACTTTCCA 58.434 43.478 0.00 0.00 39.61 3.53
34 35 3.371285 GCAGAATAACACGAGGACTTTCC 59.629 47.826 0.00 0.00 36.58 3.13
35 36 3.994392 TGCAGAATAACACGAGGACTTTC 59.006 43.478 0.00 0.00 0.00 2.62
36 37 3.746492 GTGCAGAATAACACGAGGACTTT 59.254 43.478 0.00 0.00 0.00 2.66
37 38 3.326747 GTGCAGAATAACACGAGGACTT 58.673 45.455 0.00 0.00 0.00 3.01
38 39 2.960819 GTGCAGAATAACACGAGGACT 58.039 47.619 0.00 0.00 0.00 3.85
45 46 1.463444 GACCCACGTGCAGAATAACAC 59.537 52.381 10.91 0.00 0.00 3.32
46 47 1.070914 TGACCCACGTGCAGAATAACA 59.929 47.619 10.91 0.00 0.00 2.41
47 48 1.463444 GTGACCCACGTGCAGAATAAC 59.537 52.381 10.91 0.00 0.00 1.89
48 49 1.346395 AGTGACCCACGTGCAGAATAA 59.654 47.619 10.91 0.00 39.64 1.40
54 55 1.188871 TATCCAGTGACCCACGTGCA 61.189 55.000 10.91 0.00 39.64 4.57
55 56 0.460284 CTATCCAGTGACCCACGTGC 60.460 60.000 10.91 0.00 39.64 5.34
57 58 1.898154 GCTATCCAGTGACCCACGT 59.102 57.895 0.00 0.00 39.64 4.49
66 67 1.511305 CGTGTGGTCGCTATCCAGT 59.489 57.895 0.00 0.00 35.49 4.00
83 84 1.745320 AACGCCTAGGAGGGTATGCG 61.745 60.000 14.75 8.64 41.24 4.73
103 104 1.134098 AGAACAATGGGCCCATCTACG 60.134 52.381 37.44 25.86 35.31 3.51
108 109 2.460669 GAGAAAGAACAATGGGCCCAT 58.539 47.619 32.75 32.75 38.46 4.00
109 110 1.549950 GGAGAAAGAACAATGGGCCCA 60.550 52.381 30.92 30.92 0.00 5.36
112 114 0.811281 CGGGAGAAAGAACAATGGGC 59.189 55.000 0.00 0.00 0.00 5.36
115 117 1.732259 CCGACGGGAGAAAGAACAATG 59.268 52.381 5.81 0.00 34.06 2.82
116 118 1.346722 ACCGACGGGAGAAAGAACAAT 59.653 47.619 20.00 0.00 36.97 2.71
118 120 0.754472 AACCGACGGGAGAAAGAACA 59.246 50.000 20.00 0.00 36.97 3.18
119 121 1.875009 AAACCGACGGGAGAAAGAAC 58.125 50.000 20.00 0.00 36.97 3.01
131 133 2.025898 TCAAACCTTCCCAAAACCGAC 58.974 47.619 0.00 0.00 0.00 4.79
134 136 7.712204 TCTATAATCAAACCTTCCCAAAACC 57.288 36.000 0.00 0.00 0.00 3.27
183 198 7.690256 ACCAGGAGAACACTTATAAAATCAGT 58.310 34.615 0.00 0.00 0.00 3.41
193 208 7.554959 AAGAAATAGACCAGGAGAACACTTA 57.445 36.000 0.00 0.00 0.00 2.24
242 257 8.665643 AAAATGTTCATGAATGAGCTTCAAAA 57.334 26.923 12.12 0.00 46.62 2.44
319 334 6.702716 TTAAAGACACGGATTTCCAAAAGT 57.297 33.333 0.00 0.00 35.14 2.66
326 341 6.737254 TCAGGAATTAAAGACACGGATTTC 57.263 37.500 0.00 0.00 0.00 2.17
331 346 9.855021 AAAATTATTCAGGAATTAAAGACACGG 57.145 29.630 0.00 0.00 32.50 4.94
406 423 7.396540 TTCCTGAATTCAAAATAAGGCTCTC 57.603 36.000 9.88 0.00 0.00 3.20
407 424 7.968014 ATTCCTGAATTCAAAATAAGGCTCT 57.032 32.000 9.88 0.00 0.00 4.09
476 586 7.451255 TCCTGAATTCAAAATAAGGCTCTCAAA 59.549 33.333 9.88 0.00 0.00 2.69
477 587 6.947733 TCCTGAATTCAAAATAAGGCTCTCAA 59.052 34.615 9.88 0.00 0.00 3.02
478 588 6.484288 TCCTGAATTCAAAATAAGGCTCTCA 58.516 36.000 9.88 0.00 0.00 3.27
479 589 7.396540 TTCCTGAATTCAAAATAAGGCTCTC 57.603 36.000 9.88 0.00 0.00 3.20
480 590 7.968014 ATTCCTGAATTCAAAATAAGGCTCT 57.032 32.000 9.88 0.00 0.00 4.09
554 664 9.689976 AATATTCACGAATTCAAAACACATGAA 57.310 25.926 6.22 2.84 40.76 2.57
556 666 9.730146 CAAATATTCACGAATTCAAAACACATG 57.270 29.630 6.22 0.00 32.50 3.21
563 673 6.209589 TGTCCCCAAATATTCACGAATTCAAA 59.790 34.615 6.22 0.00 32.50 2.69
566 676 5.828299 TGTCCCCAAATATTCACGAATTC 57.172 39.130 0.00 0.00 32.50 2.17
567 677 6.790232 AATGTCCCCAAATATTCACGAATT 57.210 33.333 0.00 0.00 32.50 2.17
568 678 8.477419 AATAATGTCCCCAAATATTCACGAAT 57.523 30.769 0.00 0.00 34.93 3.34
569 679 7.889873 AATAATGTCCCCAAATATTCACGAA 57.110 32.000 0.00 0.00 0.00 3.85
572 683 9.883142 TTCAAAATAATGTCCCCAAATATTCAC 57.117 29.630 0.00 0.00 0.00 3.18
590 701 9.190858 CCAGAAAATGTTCGTCAATTCAAAATA 57.809 29.630 0.00 0.00 38.90 1.40
636 747 9.743057 ACATGAATTTTCAAAGAACGTTCATAA 57.257 25.926 28.78 14.26 41.13 1.90
665 777 6.439675 AAACAAAACCTACGACTGCTAAAA 57.560 33.333 0.00 0.00 0.00 1.52
669 781 4.196971 AGAAAACAAAACCTACGACTGCT 58.803 39.130 0.00 0.00 0.00 4.24
670 782 4.547406 AGAAAACAAAACCTACGACTGC 57.453 40.909 0.00 0.00 0.00 4.40
671 783 6.782150 AGAAAGAAAACAAAACCTACGACTG 58.218 36.000 0.00 0.00 0.00 3.51
672 784 6.997239 AGAAAGAAAACAAAACCTACGACT 57.003 33.333 0.00 0.00 0.00 4.18
673 785 7.913423 AGTAGAAAGAAAACAAAACCTACGAC 58.087 34.615 0.00 0.00 32.80 4.34
732 1164 1.628846 CCTGTTGGGTACTTGCCTACT 59.371 52.381 0.00 0.00 0.00 2.57
735 1167 1.074951 GCCTGTTGGGTACTTGCCT 59.925 57.895 0.00 0.00 37.43 4.75
737 1169 1.003233 ACTAGCCTGTTGGGTACTTGC 59.997 52.381 0.00 0.00 44.58 4.01
739 1171 3.105283 CCTACTAGCCTGTTGGGTACTT 58.895 50.000 0.00 0.00 44.58 2.24
741 1173 2.743553 TCCTACTAGCCTGTTGGGTAC 58.256 52.381 7.17 0.00 44.58 3.34
793 1225 1.000396 ATTGGTCTGGGCTTGGCTC 60.000 57.895 0.00 0.00 0.00 4.70
806 1247 4.954202 TCATACTCCTACTCGTTCATTGGT 59.046 41.667 0.00 0.00 0.00 3.67
816 1257 4.219725 GCCTCTTCCATCATACTCCTACTC 59.780 50.000 0.00 0.00 0.00 2.59
817 1258 4.156477 GCCTCTTCCATCATACTCCTACT 58.844 47.826 0.00 0.00 0.00 2.57
818 1259 3.259625 GGCCTCTTCCATCATACTCCTAC 59.740 52.174 0.00 0.00 0.00 3.18
819 1260 3.511477 GGCCTCTTCCATCATACTCCTA 58.489 50.000 0.00 0.00 0.00 2.94
820 1261 2.334023 GGCCTCTTCCATCATACTCCT 58.666 52.381 0.00 0.00 0.00 3.69
821 1262 1.349357 GGGCCTCTTCCATCATACTCC 59.651 57.143 0.84 0.00 0.00 3.85
873 1321 3.305403 CGGCTGGAGTATATATATGCCCG 60.305 52.174 5.44 8.00 36.11 6.13
876 1324 3.309388 CGCGGCTGGAGTATATATATGC 58.691 50.000 5.44 4.07 0.00 3.14
907 1356 1.860676 TCTCAAGGAAAACACGACGG 58.139 50.000 0.00 0.00 0.00 4.79
1039 1634 0.819666 GATGGGATGAAGGGAACGCC 60.820 60.000 0.00 0.00 0.00 5.68
1040 1635 1.160329 CGATGGGATGAAGGGAACGC 61.160 60.000 0.00 0.00 0.00 4.84
1041 1636 1.160329 GCGATGGGATGAAGGGAACG 61.160 60.000 0.00 0.00 0.00 3.95
1042 1637 0.181350 AGCGATGGGATGAAGGGAAC 59.819 55.000 0.00 0.00 0.00 3.62
1043 1638 0.469917 GAGCGATGGGATGAAGGGAA 59.530 55.000 0.00 0.00 0.00 3.97
1044 1639 1.410850 GGAGCGATGGGATGAAGGGA 61.411 60.000 0.00 0.00 0.00 4.20
1045 1640 1.072159 GGAGCGATGGGATGAAGGG 59.928 63.158 0.00 0.00 0.00 3.95
1046 1641 0.250209 CTGGAGCGATGGGATGAAGG 60.250 60.000 0.00 0.00 0.00 3.46
1047 1642 0.250209 CCTGGAGCGATGGGATGAAG 60.250 60.000 0.00 0.00 0.00 3.02
1048 1643 1.832219 CCTGGAGCGATGGGATGAA 59.168 57.895 0.00 0.00 0.00 2.57
1049 1644 2.811514 GCCTGGAGCGATGGGATGA 61.812 63.158 0.00 0.00 0.00 2.92
1050 1645 2.281345 GCCTGGAGCGATGGGATG 60.281 66.667 0.00 0.00 0.00 3.51
1063 1658 4.200283 GACGAGCTCCTCCGCCTG 62.200 72.222 8.47 0.00 0.00 4.85
1064 1659 4.742649 TGACGAGCTCCTCCGCCT 62.743 66.667 8.47 0.00 0.00 5.52
1065 1660 4.200283 CTGACGAGCTCCTCCGCC 62.200 72.222 8.47 0.00 0.00 6.13
1066 1661 4.200283 CCTGACGAGCTCCTCCGC 62.200 72.222 8.47 0.00 0.00 5.54
1067 1662 3.522731 CCCTGACGAGCTCCTCCG 61.523 72.222 8.47 2.62 0.00 4.63
1068 1663 3.844090 GCCCTGACGAGCTCCTCC 61.844 72.222 8.47 0.00 0.00 4.30
1069 1664 3.844090 GGCCCTGACGAGCTCCTC 61.844 72.222 8.47 6.97 0.00 3.71
1070 1665 4.704103 TGGCCCTGACGAGCTCCT 62.704 66.667 8.47 0.00 0.00 3.69
1071 1666 4.154347 CTGGCCCTGACGAGCTCC 62.154 72.222 8.47 0.00 0.00 4.70
1072 1667 4.154347 CCTGGCCCTGACGAGCTC 62.154 72.222 2.73 2.73 0.00 4.09
1092 1687 3.183776 GATCGACGACGCCTCCTCC 62.184 68.421 0.00 0.00 39.58 4.30
1093 1688 2.328639 GATCGACGACGCCTCCTC 59.671 66.667 0.00 0.00 39.58 3.71
1094 1689 3.574445 CGATCGACGACGCCTCCT 61.574 66.667 10.26 0.00 45.77 3.69
1095 1690 3.786918 GACGATCGACGACGCCTCC 62.787 68.421 24.34 4.19 45.77 4.30
1096 1691 2.350985 GACGATCGACGACGCCTC 60.351 66.667 24.34 1.79 45.77 4.70
1097 1692 2.579241 CTTGACGATCGACGACGCCT 62.579 60.000 24.34 0.00 45.77 5.52
1098 1693 2.202388 TTGACGATCGACGACGCC 60.202 61.111 24.34 8.77 45.77 5.68
1099 1694 2.215604 CCTTGACGATCGACGACGC 61.216 63.158 24.34 4.19 45.77 5.19
1100 1695 2.215604 GCCTTGACGATCGACGACG 61.216 63.158 24.34 10.56 45.77 5.12
1101 1696 1.134530 CAGCCTTGACGATCGACGAC 61.135 60.000 24.34 10.37 45.77 4.34
1102 1697 1.136774 CAGCCTTGACGATCGACGA 59.863 57.895 24.34 14.97 45.77 4.20
1104 1699 1.519455 CCCAGCCTTGACGATCGAC 60.519 63.158 24.34 17.11 0.00 4.20
1105 1700 1.982395 ACCCAGCCTTGACGATCGA 60.982 57.895 24.34 0.00 0.00 3.59
1106 1701 1.811266 CACCCAGCCTTGACGATCG 60.811 63.158 14.88 14.88 0.00 3.69
1107 1702 2.109126 GCACCCAGCCTTGACGATC 61.109 63.158 0.00 0.00 37.23 3.69
1108 1703 2.045926 GCACCCAGCCTTGACGAT 60.046 61.111 0.00 0.00 37.23 3.73
1109 1704 4.680237 CGCACCCAGCCTTGACGA 62.680 66.667 0.00 0.00 41.38 4.20
1118 1713 3.965539 CTCTTGGAGCCGCACCCAG 62.966 68.421 4.22 2.99 33.43 4.45
1119 1714 4.020617 CTCTTGGAGCCGCACCCA 62.021 66.667 4.22 2.42 0.00 4.51
1213 1853 0.911525 TCCTCCTCCTTGGCCTTGAG 60.912 60.000 3.32 7.04 35.26 3.02
1258 1898 4.767255 GACCTGCACCGCCTCCTG 62.767 72.222 0.00 0.00 0.00 3.86
1390 2030 1.693083 GCGTGGGCGTTGTACTCATC 61.693 60.000 0.00 0.00 40.81 2.92
1391 2031 1.740296 GCGTGGGCGTTGTACTCAT 60.740 57.895 0.00 0.00 40.81 2.90
1459 4178 3.260100 CTCCTGCCTGGGGTTGGT 61.260 66.667 0.00 0.00 36.20 3.67
1462 4181 2.612115 CTCCTCCTGCCTGGGGTT 60.612 66.667 0.00 0.00 33.29 4.11
1537 4256 0.107508 ATGGTGAAGCATCCCAGTCG 60.108 55.000 5.58 0.00 31.92 4.18
1538 4257 1.673168 GATGGTGAAGCATCCCAGTC 58.327 55.000 10.69 1.54 31.92 3.51
1539 4258 0.257039 GGATGGTGAAGCATCCCAGT 59.743 55.000 24.72 0.00 41.02 4.00
1540 4259 3.106738 GGATGGTGAAGCATCCCAG 57.893 57.895 24.72 0.00 41.02 4.45
1548 4267 4.098501 GGAAGCATTTTAGGGATGGTGAAG 59.901 45.833 0.00 0.00 35.58 3.02
1606 4325 9.056005 GCAGGATCTGTACAATAATACAATTGA 57.944 33.333 13.59 0.00 35.91 2.57
1607 4326 8.839343 TGCAGGATCTGTACAATAATACAATTG 58.161 33.333 3.24 3.24 37.08 2.32
1608 4327 8.978874 TGCAGGATCTGTACAATAATACAATT 57.021 30.769 0.00 0.00 34.68 2.32
1609 4328 8.978874 TTGCAGGATCTGTACAATAATACAAT 57.021 30.769 0.00 0.00 34.68 2.71
1610 4329 8.800370 TTTGCAGGATCTGTACAATAATACAA 57.200 30.769 0.00 0.00 34.68 2.41
1611 4330 8.800370 TTTTGCAGGATCTGTACAATAATACA 57.200 30.769 0.00 0.00 33.43 2.29
1637 4356 5.303333 ACAATATCAAAAAGGGTGAACCGTT 59.697 36.000 1.60 1.60 46.96 4.44
1638 4357 4.830600 ACAATATCAAAAAGGGTGAACCGT 59.169 37.500 0.00 0.00 46.96 4.83
1639 4358 5.385509 ACAATATCAAAAAGGGTGAACCG 57.614 39.130 0.00 0.00 46.96 4.44
1640 4359 9.719355 AAATTACAATATCAAAAAGGGTGAACC 57.281 29.630 0.00 0.00 40.67 3.62
1643 4362 9.921637 GTCAAATTACAATATCAAAAAGGGTGA 57.078 29.630 0.00 0.00 0.00 4.02
1644 4363 8.859156 CGTCAAATTACAATATCAAAAAGGGTG 58.141 33.333 0.00 0.00 0.00 4.61
1645 4364 8.798402 TCGTCAAATTACAATATCAAAAAGGGT 58.202 29.630 0.00 0.00 0.00 4.34
1646 4365 9.072294 GTCGTCAAATTACAATATCAAAAAGGG 57.928 33.333 0.00 0.00 0.00 3.95
1647 4366 9.840427 AGTCGTCAAATTACAATATCAAAAAGG 57.160 29.630 0.00 0.00 0.00 3.11
1649 4368 9.619316 CCAGTCGTCAAATTACAATATCAAAAA 57.381 29.630 0.00 0.00 0.00 1.94
1650 4369 8.240682 CCCAGTCGTCAAATTACAATATCAAAA 58.759 33.333 0.00 0.00 0.00 2.44
1651 4370 7.608376 TCCCAGTCGTCAAATTACAATATCAAA 59.392 33.333 0.00 0.00 0.00 2.69
1652 4371 7.106890 TCCCAGTCGTCAAATTACAATATCAA 58.893 34.615 0.00 0.00 0.00 2.57
1653 4372 6.645306 TCCCAGTCGTCAAATTACAATATCA 58.355 36.000 0.00 0.00 0.00 2.15
1654 4373 7.359264 CGATCCCAGTCGTCAAATTACAATATC 60.359 40.741 0.00 0.00 36.88 1.63
1655 4374 6.423905 CGATCCCAGTCGTCAAATTACAATAT 59.576 38.462 0.00 0.00 36.88 1.28
1656 4375 5.751509 CGATCCCAGTCGTCAAATTACAATA 59.248 40.000 0.00 0.00 36.88 1.90
1657 4376 4.570772 CGATCCCAGTCGTCAAATTACAAT 59.429 41.667 0.00 0.00 36.88 2.71
1658 4377 3.930229 CGATCCCAGTCGTCAAATTACAA 59.070 43.478 0.00 0.00 36.88 2.41
1659 4378 3.193903 TCGATCCCAGTCGTCAAATTACA 59.806 43.478 0.00 0.00 42.07 2.41
1660 4379 3.777478 TCGATCCCAGTCGTCAAATTAC 58.223 45.455 0.00 0.00 42.07 1.89
1661 4380 3.181479 CCTCGATCCCAGTCGTCAAATTA 60.181 47.826 0.00 0.00 42.07 1.40
1662 4381 2.418746 CCTCGATCCCAGTCGTCAAATT 60.419 50.000 0.00 0.00 42.07 1.82
1663 4382 1.137086 CCTCGATCCCAGTCGTCAAAT 59.863 52.381 0.00 0.00 42.07 2.32
1664 4383 0.530744 CCTCGATCCCAGTCGTCAAA 59.469 55.000 0.00 0.00 42.07 2.69
1665 4384 0.323087 TCCTCGATCCCAGTCGTCAA 60.323 55.000 0.00 0.00 42.07 3.18
1666 4385 0.106669 ATCCTCGATCCCAGTCGTCA 60.107 55.000 0.00 0.00 42.07 4.35
1667 4386 0.312416 CATCCTCGATCCCAGTCGTC 59.688 60.000 0.00 0.00 42.07 4.20
1668 4387 0.395862 ACATCCTCGATCCCAGTCGT 60.396 55.000 0.00 0.00 42.07 4.34
1669 4388 0.747255 AACATCCTCGATCCCAGTCG 59.253 55.000 0.00 0.00 42.74 4.18
1670 4389 2.939103 CAAAACATCCTCGATCCCAGTC 59.061 50.000 0.00 0.00 0.00 3.51
1671 4390 2.356125 CCAAAACATCCTCGATCCCAGT 60.356 50.000 0.00 0.00 0.00 4.00
1672 4391 2.092968 TCCAAAACATCCTCGATCCCAG 60.093 50.000 0.00 0.00 0.00 4.45
1673 4392 1.912731 TCCAAAACATCCTCGATCCCA 59.087 47.619 0.00 0.00 0.00 4.37
1674 4393 2.710096 TCCAAAACATCCTCGATCCC 57.290 50.000 0.00 0.00 0.00 3.85
1675 4394 5.215252 TCTATCCAAAACATCCTCGATCC 57.785 43.478 0.00 0.00 0.00 3.36
1676 4395 6.226787 ACATCTATCCAAAACATCCTCGATC 58.773 40.000 0.00 0.00 0.00 3.69
1677 4396 6.179906 ACATCTATCCAAAACATCCTCGAT 57.820 37.500 0.00 0.00 0.00 3.59
1678 4397 5.614324 ACATCTATCCAAAACATCCTCGA 57.386 39.130 0.00 0.00 0.00 4.04
1679 4398 6.986817 ACTAACATCTATCCAAAACATCCTCG 59.013 38.462 0.00 0.00 0.00 4.63
1680 4399 7.770897 ACACTAACATCTATCCAAAACATCCTC 59.229 37.037 0.00 0.00 0.00 3.71
1835 4559 1.003839 ATGAACGCCTCGGCTGAAA 60.004 52.632 6.35 0.00 39.32 2.69
2045 4770 6.550854 TGTTCCATTTTGTCTTTCCTTCTCAT 59.449 34.615 0.00 0.00 0.00 2.90
2198 4929 7.098477 TGTTCCCTTTTTGATGCATCTTTATG 58.902 34.615 26.32 13.71 36.09 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.