Multiple sequence alignment - TraesCS3B01G078100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G078100 chr3B 100.000 3250 0 0 1 3250 49150928 49154177 0.000000e+00 6002.0
1 TraesCS3B01G078100 chr3B 89.851 1005 69 13 1472 2459 47476690 47475702 0.000000e+00 1260.0
2 TraesCS3B01G078100 chr3B 87.861 865 67 17 1569 2402 47742101 47741244 0.000000e+00 981.0
3 TraesCS3B01G078100 chr3B 87.052 865 74 17 1569 2402 48079297 48078440 0.000000e+00 942.0
4 TraesCS3B01G078100 chr3B 87.029 717 63 15 245 936 47543916 47543205 0.000000e+00 782.0
5 TraesCS3B01G078100 chr3B 94.943 435 20 2 1 434 47605977 47605544 0.000000e+00 680.0
6 TraesCS3B01G078100 chr3B 96.970 396 12 0 2855 3250 671136747 671136352 0.000000e+00 665.0
7 TraesCS3B01G078100 chr3B 96.199 342 12 1 2513 2854 726355365 726355705 2.830000e-155 558.0
8 TraesCS3B01G078100 chr3B 88.889 441 37 8 1134 1572 47864535 47864105 1.720000e-147 532.0
9 TraesCS3B01G078100 chr3B 88.662 441 38 8 1134 1572 48080113 48079683 7.990000e-146 527.0
10 TraesCS3B01G078100 chr3B 88.209 441 40 8 1134 1572 47742890 47742460 1.730000e-142 516.0
11 TraesCS3B01G078100 chr3B 86.029 408 43 8 154 548 47745872 47745466 3.000000e-115 425.0
12 TraesCS3B01G078100 chr3B 85.539 408 45 8 154 548 47867205 47866799 6.490000e-112 414.0
13 TraesCS3B01G078100 chr3B 85.294 408 46 8 154 548 47813627 47813221 3.020000e-110 409.0
14 TraesCS3B01G078100 chr3B 84.804 408 48 8 154 548 48083141 48082735 6.530000e-107 398.0
15 TraesCS3B01G078100 chr3B 90.698 43 2 2 2846 2886 49768643 49768601 4.530000e-04 56.5
16 TraesCS3B01G078100 chr3D 90.064 1399 83 18 1087 2457 28547917 28546547 0.000000e+00 1762.0
17 TraesCS3B01G078100 chr3D 91.446 1286 77 14 1112 2384 28592230 28590965 0.000000e+00 1735.0
18 TraesCS3B01G078100 chr3D 92.263 1215 77 10 1193 2398 28944514 28945720 0.000000e+00 1707.0
19 TraesCS3B01G078100 chr3D 92.472 704 39 13 244 936 28869200 28868500 0.000000e+00 994.0
20 TraesCS3B01G078100 chr3D 89.111 799 65 11 137 919 28549090 28548298 0.000000e+00 974.0
21 TraesCS3B01G078100 chr3D 92.912 522 35 2 1742 2263 28857903 28857384 0.000000e+00 758.0
22 TraesCS3B01G078100 chr3D 89.168 517 50 5 1234 1747 28864700 28864187 9.830000e-180 640.0
23 TraesCS3B01G078100 chr3D 84.238 387 29 14 238 606 28943606 28943978 6.670000e-92 348.0
24 TraesCS3B01G078100 chr3D 84.936 312 26 11 314 605 28593020 28592710 2.450000e-76 296.0
25 TraesCS3B01G078100 chr3D 90.769 65 5 1 679 742 28736303 28736239 5.780000e-13 86.1
26 TraesCS3B01G078100 chr3D 100.000 34 0 0 936 969 28592420 28592387 2.710000e-06 63.9
27 TraesCS3B01G078100 chr3D 91.111 45 2 2 1095 1139 28944424 28944466 3.500000e-05 60.2
28 TraesCS3B01G078100 chr3A 89.485 1398 87 27 1076 2453 38281728 38280371 0.000000e+00 1712.0
29 TraesCS3B01G078100 chr3A 88.872 1348 98 27 1120 2445 38300502 38301819 0.000000e+00 1611.0
30 TraesCS3B01G078100 chr3A 86.430 759 57 23 182 908 38282823 38282079 0.000000e+00 789.0
31 TraesCS3B01G078100 chr3A 81.518 303 28 15 314 605 38299649 38299934 1.170000e-54 224.0
32 TraesCS3B01G078100 chr3A 89.130 46 3 2 2843 2886 82895233 82895278 4.530000e-04 56.5
33 TraesCS3B01G078100 chr6B 90.376 1143 76 15 1120 2260 131693856 131694966 0.000000e+00 1471.0
34 TraesCS3B01G078100 chr6B 97.704 392 9 0 2859 3250 693803872 693804263 0.000000e+00 675.0
35 TraesCS3B01G078100 chr6B 97.633 338 5 2 2518 2854 451676786 451676451 7.820000e-161 577.0
36 TraesCS3B01G078100 chr6B 96.450 338 11 1 2516 2852 693802867 693803204 1.020000e-154 556.0
37 TraesCS3B01G078100 chr6B 87.768 327 34 3 1811 2137 131717569 131717889 8.510000e-101 377.0
38 TraesCS3B01G078100 chr6B 89.145 304 20 6 314 605 131691834 131692136 1.840000e-97 366.0
39 TraesCS3B01G078100 chr6B 83.511 376 36 16 2133 2486 131719616 131719987 8.690000e-86 327.0
40 TraesCS3B01G078100 chr4B 82.051 1053 148 23 1189 2235 610408303 610407286 0.000000e+00 859.0
41 TraesCS3B01G078100 chr4B 97.436 390 10 0 2861 3250 28266044 28265655 0.000000e+00 665.0
42 TraesCS3B01G078100 chr4B 82.580 752 101 14 1189 1935 610426113 610425387 1.270000e-178 636.0
43 TraesCS3B01G078100 chr4B 97.050 339 8 2 2518 2854 479219505 479219167 1.310000e-158 569.0
44 TraesCS3B01G078100 chr4B 80.374 214 34 7 2023 2235 610424838 610424632 4.340000e-34 156.0
45 TraesCS3B01G078100 chr4D 81.966 1048 136 32 1198 2235 481415660 481414656 0.000000e+00 839.0
46 TraesCS3B01G078100 chr2B 97.949 390 8 0 2861 3250 617149578 617149967 0.000000e+00 676.0
47 TraesCS3B01G078100 chr2B 97.436 390 9 1 2859 3248 779283819 779284207 0.000000e+00 664.0
48 TraesCS3B01G078100 chr2B 96.962 395 12 0 2855 3249 794227076 794227470 0.000000e+00 664.0
49 TraesCS3B01G078100 chr1B 97.222 396 11 0 2855 3250 672156429 672156824 0.000000e+00 671.0
50 TraesCS3B01G078100 chr1B 97.179 390 11 0 2861 3250 61991352 61991741 0.000000e+00 660.0
51 TraesCS3B01G078100 chr1B 97.353 340 8 1 2516 2854 61990714 61991053 7.820000e-161 577.0
52 TraesCS3B01G078100 chr1B 95.312 64 3 0 1 64 48927043 48926980 5.740000e-18 102.0
53 TraesCS3B01G078100 chr7B 97.436 390 10 0 2861 3250 698923009 698922620 0.000000e+00 665.0
54 TraesCS3B01G078100 chr7B 96.765 340 10 1 2516 2854 693387279 693386940 1.690000e-157 566.0
55 TraesCS3B01G078100 chr7B 96.997 333 10 0 2519 2851 6895944 6895612 7.870000e-156 560.0
56 TraesCS3B01G078100 chr5A 83.038 678 91 19 1564 2232 661242673 661243335 7.760000e-166 593.0
57 TraesCS3B01G078100 chr5B 98.187 331 5 1 2518 2847 411933655 411933325 7.820000e-161 577.0
58 TraesCS3B01G078100 chr5B 96.221 344 12 1 2513 2855 686430916 686431259 2.190000e-156 562.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G078100 chr3B 49150928 49154177 3249 False 6002.000000 6002 100.000000 1 3250 1 chr3B.!!$F1 3249
1 TraesCS3B01G078100 chr3B 47475702 47476690 988 True 1260.000000 1260 89.851000 1472 2459 1 chr3B.!!$R1 987
2 TraesCS3B01G078100 chr3B 47543205 47543916 711 True 782.000000 782 87.029000 245 936 1 chr3B.!!$R2 691
3 TraesCS3B01G078100 chr3B 47741244 47745872 4628 True 640.666667 981 87.366333 154 2402 3 chr3B.!!$R7 2248
4 TraesCS3B01G078100 chr3B 48078440 48083141 4701 True 622.333333 942 86.839333 154 2402 3 chr3B.!!$R9 2248
5 TraesCS3B01G078100 chr3B 47864105 47867205 3100 True 473.000000 532 87.214000 154 1572 2 chr3B.!!$R8 1418
6 TraesCS3B01G078100 chr3D 28546547 28549090 2543 True 1368.000000 1762 89.587500 137 2457 2 chr3D.!!$R3 2320
7 TraesCS3B01G078100 chr3D 28864187 28869200 5013 True 817.000000 994 90.820000 244 1747 2 chr3D.!!$R5 1503
8 TraesCS3B01G078100 chr3D 28857384 28857903 519 True 758.000000 758 92.912000 1742 2263 1 chr3D.!!$R2 521
9 TraesCS3B01G078100 chr3D 28943606 28945720 2114 False 705.066667 1707 89.204000 238 2398 3 chr3D.!!$F1 2160
10 TraesCS3B01G078100 chr3D 28590965 28593020 2055 True 698.300000 1735 92.127333 314 2384 3 chr3D.!!$R4 2070
11 TraesCS3B01G078100 chr3A 38280371 38282823 2452 True 1250.500000 1712 87.957500 182 2453 2 chr3A.!!$R1 2271
12 TraesCS3B01G078100 chr3A 38299649 38301819 2170 False 917.500000 1611 85.195000 314 2445 2 chr3A.!!$F2 2131
13 TraesCS3B01G078100 chr6B 131691834 131694966 3132 False 918.500000 1471 89.760500 314 2260 2 chr6B.!!$F1 1946
14 TraesCS3B01G078100 chr6B 693802867 693804263 1396 False 615.500000 675 97.077000 2516 3250 2 chr6B.!!$F3 734
15 TraesCS3B01G078100 chr6B 131717569 131719987 2418 False 352.000000 377 85.639500 1811 2486 2 chr6B.!!$F2 675
16 TraesCS3B01G078100 chr4B 610407286 610408303 1017 True 859.000000 859 82.051000 1189 2235 1 chr4B.!!$R3 1046
17 TraesCS3B01G078100 chr4B 610424632 610426113 1481 True 396.000000 636 81.477000 1189 2235 2 chr4B.!!$R4 1046
18 TraesCS3B01G078100 chr4D 481414656 481415660 1004 True 839.000000 839 81.966000 1198 2235 1 chr4D.!!$R1 1037
19 TraesCS3B01G078100 chr1B 61990714 61991741 1027 False 618.500000 660 97.266000 2516 3250 2 chr1B.!!$F2 734
20 TraesCS3B01G078100 chr5A 661242673 661243335 662 False 593.000000 593 83.038000 1564 2232 1 chr5A.!!$F1 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 4062 0.251474 TGTGTACTGTCTAGGCCCGT 60.251 55.0 0.0 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2505 12032 0.318275 GATGCTCTAACTCGCCTCCG 60.318 60.0 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.930667 TTTGAACTAGTTGAACTTGTACCC 57.069 37.500 14.14 6.44 33.24 3.69
24 25 5.881923 TGAACTAGTTGAACTTGTACCCT 57.118 39.130 14.14 0.00 33.24 4.34
25 26 5.607477 TGAACTAGTTGAACTTGTACCCTG 58.393 41.667 14.14 0.00 33.24 4.45
26 27 5.129815 TGAACTAGTTGAACTTGTACCCTGT 59.870 40.000 14.14 0.00 33.24 4.00
27 28 5.625568 ACTAGTTGAACTTGTACCCTGTT 57.374 39.130 10.56 0.00 32.65 3.16
28 29 6.736110 ACTAGTTGAACTTGTACCCTGTTA 57.264 37.500 10.56 0.00 32.65 2.41
29 30 7.312415 ACTAGTTGAACTTGTACCCTGTTAT 57.688 36.000 10.56 0.00 32.65 1.89
30 31 7.159372 ACTAGTTGAACTTGTACCCTGTTATG 58.841 38.462 10.56 0.00 32.65 1.90
31 32 5.937111 AGTTGAACTTGTACCCTGTTATGT 58.063 37.500 0.00 0.00 0.00 2.29
32 33 6.362248 AGTTGAACTTGTACCCTGTTATGTT 58.638 36.000 0.00 0.00 0.00 2.71
33 34 7.511268 AGTTGAACTTGTACCCTGTTATGTTA 58.489 34.615 0.00 0.00 0.00 2.41
34 35 7.994334 AGTTGAACTTGTACCCTGTTATGTTAA 59.006 33.333 0.00 0.00 0.00 2.01
35 36 7.733402 TGAACTTGTACCCTGTTATGTTAAC 57.267 36.000 0.00 0.00 0.00 2.01
36 37 7.511268 TGAACTTGTACCCTGTTATGTTAACT 58.489 34.615 7.22 0.00 0.00 2.24
37 38 7.994334 TGAACTTGTACCCTGTTATGTTAACTT 59.006 33.333 7.22 3.03 0.00 2.66
38 39 7.974482 ACTTGTACCCTGTTATGTTAACTTC 57.026 36.000 7.22 0.00 0.00 3.01
39 40 7.511268 ACTTGTACCCTGTTATGTTAACTTCA 58.489 34.615 7.22 0.62 0.00 3.02
40 41 8.161425 ACTTGTACCCTGTTATGTTAACTTCAT 58.839 33.333 7.22 0.00 0.00 2.57
41 42 7.915293 TGTACCCTGTTATGTTAACTTCATG 57.085 36.000 7.22 0.00 0.00 3.07
42 43 7.455058 TGTACCCTGTTATGTTAACTTCATGT 58.545 34.615 7.22 4.57 0.00 3.21
43 44 7.604927 TGTACCCTGTTATGTTAACTTCATGTC 59.395 37.037 7.22 0.00 0.00 3.06
44 45 6.779860 ACCCTGTTATGTTAACTTCATGTCT 58.220 36.000 7.22 0.00 0.00 3.41
45 46 7.913789 ACCCTGTTATGTTAACTTCATGTCTA 58.086 34.615 7.22 0.00 0.00 2.59
46 47 8.548877 ACCCTGTTATGTTAACTTCATGTCTAT 58.451 33.333 7.22 0.00 0.00 1.98
47 48 9.396022 CCCTGTTATGTTAACTTCATGTCTATT 57.604 33.333 7.22 0.00 0.00 1.73
54 55 9.725019 ATGTTAACTTCATGTCTATTTCTGTCA 57.275 29.630 7.22 0.00 0.00 3.58
55 56 9.208022 TGTTAACTTCATGTCTATTTCTGTCAG 57.792 33.333 7.22 0.00 0.00 3.51
56 57 9.209175 GTTAACTTCATGTCTATTTCTGTCAGT 57.791 33.333 0.00 0.00 0.00 3.41
57 58 9.778741 TTAACTTCATGTCTATTTCTGTCAGTT 57.221 29.630 0.00 0.00 0.00 3.16
58 59 7.897575 ACTTCATGTCTATTTCTGTCAGTTC 57.102 36.000 0.00 0.00 0.00 3.01
59 60 6.587990 ACTTCATGTCTATTTCTGTCAGTTCG 59.412 38.462 0.00 0.00 0.00 3.95
60 61 5.410924 TCATGTCTATTTCTGTCAGTTCGG 58.589 41.667 0.00 0.00 0.00 4.30
61 62 4.866508 TGTCTATTTCTGTCAGTTCGGT 57.133 40.909 0.00 0.00 0.00 4.69
62 63 5.209818 TGTCTATTTCTGTCAGTTCGGTT 57.790 39.130 0.00 0.00 0.00 4.44
63 64 6.335471 TGTCTATTTCTGTCAGTTCGGTTA 57.665 37.500 0.00 0.00 0.00 2.85
64 65 6.751157 TGTCTATTTCTGTCAGTTCGGTTAA 58.249 36.000 0.00 0.00 0.00 2.01
65 66 6.643770 TGTCTATTTCTGTCAGTTCGGTTAAC 59.356 38.462 0.00 0.00 38.46 2.01
78 79 5.437289 TTCGGTTAACTGAACTAGTCGAA 57.563 39.130 23.11 14.20 39.18 3.71
79 80 5.633830 TCGGTTAACTGAACTAGTCGAAT 57.366 39.130 14.85 0.00 39.18 3.34
80 81 5.634896 TCGGTTAACTGAACTAGTCGAATC 58.365 41.667 14.85 0.00 39.18 2.52
81 82 5.181811 TCGGTTAACTGAACTAGTCGAATCA 59.818 40.000 14.85 0.00 39.18 2.57
82 83 6.034591 CGGTTAACTGAACTAGTCGAATCAT 58.965 40.000 8.90 0.00 39.18 2.45
83 84 6.530534 CGGTTAACTGAACTAGTCGAATCATT 59.469 38.462 8.90 0.00 39.18 2.57
84 85 7.063074 CGGTTAACTGAACTAGTCGAATCATTT 59.937 37.037 8.90 0.00 39.18 2.32
85 86 8.381387 GGTTAACTGAACTAGTCGAATCATTTC 58.619 37.037 5.42 0.00 39.18 2.17
86 87 9.141400 GTTAACTGAACTAGTCGAATCATTTCT 57.859 33.333 0.00 0.00 39.18 2.52
87 88 9.706691 TTAACTGAACTAGTCGAATCATTTCTT 57.293 29.630 0.00 0.00 39.18 2.52
89 90 9.706691 AACTGAACTAGTCGAATCATTTCTTAA 57.293 29.630 0.00 0.00 39.18 1.85
90 91 9.877178 ACTGAACTAGTCGAATCATTTCTTAAT 57.123 29.630 0.00 0.00 33.17 1.40
92 93 9.653287 TGAACTAGTCGAATCATTTCTTAATGT 57.347 29.630 0.00 0.00 41.54 2.71
96 97 9.214953 CTAGTCGAATCATTTCTTAATGTTTGC 57.785 33.333 0.00 0.00 41.54 3.68
97 98 7.029563 AGTCGAATCATTTCTTAATGTTTGCC 58.970 34.615 0.00 0.00 41.54 4.52
98 99 6.806249 GTCGAATCATTTCTTAATGTTTGCCA 59.194 34.615 0.00 0.00 41.54 4.92
99 100 6.806249 TCGAATCATTTCTTAATGTTTGCCAC 59.194 34.615 0.00 0.00 41.54 5.01
100 101 6.585702 CGAATCATTTCTTAATGTTTGCCACA 59.414 34.615 0.00 0.00 41.54 4.17
101 102 7.116090 CGAATCATTTCTTAATGTTTGCCACAA 59.884 33.333 0.00 0.00 41.54 3.33
102 103 8.674263 AATCATTTCTTAATGTTTGCCACAAA 57.326 26.923 0.00 0.00 41.54 2.83
103 104 8.674263 ATCATTTCTTAATGTTTGCCACAAAA 57.326 26.923 0.00 0.00 41.54 2.44
104 105 8.498054 TCATTTCTTAATGTTTGCCACAAAAA 57.502 26.923 0.00 0.00 41.54 1.94
169 170 2.093447 AGGGCTAAGAAACTCCATGTCG 60.093 50.000 0.00 0.00 0.00 4.35
212 213 2.198827 ATTTTCTCCATCGTGCACCA 57.801 45.000 12.15 0.00 0.00 4.17
274 279 3.288809 CCAAACTTAGCTTTGGTGAGC 57.711 47.619 14.05 0.00 43.67 4.26
359 365 1.072806 TCAGTCACAGAGGCAGCAAAT 59.927 47.619 0.00 0.00 0.00 2.32
361 367 0.445436 GTCACAGAGGCAGCAAATCG 59.555 55.000 0.00 0.00 0.00 3.34
463 487 3.560025 GGATATCCACGCAGATCCCATTT 60.560 47.826 17.34 0.00 33.11 2.32
508 541 4.261197 CCAAAAGACGGAGCCAATATAAGC 60.261 45.833 0.00 0.00 0.00 3.09
512 545 1.623811 ACGGAGCCAATATAAGCCGAT 59.376 47.619 0.00 0.00 41.11 4.18
606 1153 2.887152 CCGGAATCCCAATCCAATCTTC 59.113 50.000 0.00 0.00 36.74 2.87
607 1154 3.554934 CGGAATCCCAATCCAATCTTCA 58.445 45.455 0.00 0.00 36.74 3.02
653 1201 0.895559 GGGTGGGCTGTTCTTCTTGG 60.896 60.000 0.00 0.00 0.00 3.61
671 1219 4.157656 TCTTGGCTTTTCAAACCGGATATG 59.842 41.667 9.46 3.70 0.00 1.78
850 3936 4.520111 GCCTTTGCATCATGATATGGTGTA 59.480 41.667 8.15 0.00 43.30 2.90
860 3946 1.721389 GATATGGTGTACGATGCTGCG 59.279 52.381 0.00 0.00 37.29 5.18
908 4042 6.880822 TTTTGTCGCTCATGTATACTGTAC 57.119 37.500 4.17 0.00 0.00 2.90
909 4043 5.830000 TTGTCGCTCATGTATACTGTACT 57.170 39.130 4.17 0.00 0.00 2.73
910 4044 5.169836 TGTCGCTCATGTATACTGTACTG 57.830 43.478 4.17 0.00 0.00 2.74
911 4045 4.638865 TGTCGCTCATGTATACTGTACTGT 59.361 41.667 10.46 10.46 0.00 3.55
912 4046 4.970611 GTCGCTCATGTATACTGTACTGTG 59.029 45.833 15.01 0.00 0.00 3.66
914 4048 5.818857 TCGCTCATGTATACTGTACTGTGTA 59.181 40.000 15.01 10.06 0.00 2.90
915 4049 5.907945 CGCTCATGTATACTGTACTGTGTAC 59.092 44.000 23.83 23.83 35.84 2.90
916 4050 6.238402 CGCTCATGTATACTGTACTGTGTACT 60.238 42.308 27.66 16.96 36.13 2.73
918 4052 7.415318 GCTCATGTATACTGTACTGTGTACTGT 60.415 40.741 27.66 18.82 36.13 3.55
920 4054 7.827729 TCATGTATACTGTACTGTGTACTGTCT 59.172 37.037 27.66 13.75 36.13 3.41
921 4055 9.106070 CATGTATACTGTACTGTGTACTGTCTA 57.894 37.037 27.66 15.44 36.13 2.59
922 4056 8.713737 TGTATACTGTACTGTGTACTGTCTAG 57.286 38.462 27.66 6.99 36.13 2.43
924 4058 3.757493 ACTGTACTGTGTACTGTCTAGGC 59.243 47.826 4.39 0.00 0.00 3.93
926 4060 1.558233 ACTGTGTACTGTCTAGGCCC 58.442 55.000 0.00 0.00 0.00 5.80
928 4062 0.251474 TGTGTACTGTCTAGGCCCGT 60.251 55.000 0.00 0.00 0.00 5.28
930 4064 1.674962 GTGTACTGTCTAGGCCCGTAG 59.325 57.143 0.00 0.00 0.00 3.51
969 5498 1.600023 TTCTTACAGCCCAACCAACG 58.400 50.000 0.00 0.00 0.00 4.10
976 5513 0.469144 AGCCCAACCAACGAACCAAT 60.469 50.000 0.00 0.00 0.00 3.16
985 5529 2.601266 CCAACGAACCAATCACAACGAC 60.601 50.000 0.00 0.00 0.00 4.34
1003 5584 2.022195 GACTACTACTGCCGACCATGA 58.978 52.381 0.00 0.00 0.00 3.07
1012 5593 0.798776 GCCGACCATGAACAACTCTG 59.201 55.000 0.00 0.00 0.00 3.35
1176 6221 2.418910 CCTGCTGACGACCGAGGAT 61.419 63.158 0.00 0.00 0.00 3.24
1190 6239 2.076863 CGAGGATTTCTTGGGTGTGTC 58.923 52.381 0.00 0.00 0.00 3.67
1196 6245 1.416243 TTCTTGGGTGTGTCCGTACT 58.584 50.000 0.00 0.00 37.00 2.73
1820 9097 2.092321 GCAGTCCTACTCCTACTCCTCA 60.092 54.545 0.00 0.00 0.00 3.86
1871 9148 2.418910 CCTGGAGCACGACCTCGAT 61.419 63.158 0.78 0.00 43.02 3.59
1898 9175 3.849951 ATGGACTACCCGGCGCAG 61.850 66.667 10.83 4.65 37.93 5.18
2071 9809 0.108186 CGCCTGTACAAGAGGATGCA 60.108 55.000 3.88 0.00 31.48 3.96
2232 11713 2.280797 GCTGTTGGTGCCTCGACA 60.281 61.111 0.00 0.00 0.00 4.35
2334 11856 4.460034 AGAAAATAAAATACCGGGTGCGTT 59.540 37.500 10.66 3.21 0.00 4.84
2347 11869 0.177141 GTGCGTTGGATGGGTAGCTA 59.823 55.000 0.00 0.00 0.00 3.32
2349 11871 0.177141 GCGTTGGATGGGTAGCTACA 59.823 55.000 24.75 6.36 0.00 2.74
2355 11877 1.612463 GGATGGGTAGCTACAGTACCG 59.388 57.143 24.75 0.00 40.94 4.02
2358 11880 3.582998 TGGGTAGCTACAGTACCGTAT 57.417 47.619 24.75 0.00 40.94 3.06
2388 11912 4.094294 CGTGTGGTGGTCGAATAAATCATT 59.906 41.667 0.00 0.00 0.00 2.57
2398 11922 8.973378 TGGTCGAATAAATCATTGTTTTGTTTC 58.027 29.630 3.49 5.72 0.00 2.78
2413 11940 7.814642 TGTTTTGTTTCGTTGGAAGTAAGTTA 58.185 30.769 0.00 0.00 32.80 2.24
2448 11975 6.582677 AATGTGGGTCATTCGATTTTGTTA 57.417 33.333 0.00 0.00 42.35 2.41
2467 11994 6.049955 TGTTAGGGAACAAAGGTAGAGATG 57.950 41.667 0.00 0.00 42.66 2.90
2468 11995 3.636153 AGGGAACAAAGGTAGAGATGC 57.364 47.619 0.00 0.00 0.00 3.91
2469 11996 2.093447 AGGGAACAAAGGTAGAGATGCG 60.093 50.000 0.00 0.00 0.00 4.73
2470 11997 2.093658 GGGAACAAAGGTAGAGATGCGA 60.094 50.000 0.00 0.00 0.00 5.10
2471 11998 3.432326 GGGAACAAAGGTAGAGATGCGAT 60.432 47.826 0.00 0.00 0.00 4.58
2472 11999 3.557595 GGAACAAAGGTAGAGATGCGATG 59.442 47.826 0.00 0.00 0.00 3.84
2473 12000 3.185246 ACAAAGGTAGAGATGCGATGG 57.815 47.619 0.00 0.00 0.00 3.51
2474 12001 2.158900 ACAAAGGTAGAGATGCGATGGG 60.159 50.000 0.00 0.00 0.00 4.00
2475 12002 1.051812 AAGGTAGAGATGCGATGGGG 58.948 55.000 0.00 0.00 0.00 4.96
2476 12003 1.004440 GGTAGAGATGCGATGGGGC 60.004 63.158 0.00 0.00 0.00 5.80
2490 12017 3.081409 GGGCACCGAGGCTAGGAA 61.081 66.667 21.22 0.00 40.86 3.36
2491 12018 2.444256 GGGCACCGAGGCTAGGAAT 61.444 63.158 21.22 0.00 40.86 3.01
2492 12019 1.119574 GGGCACCGAGGCTAGGAATA 61.120 60.000 21.22 0.00 40.86 1.75
2493 12020 0.756903 GGCACCGAGGCTAGGAATAA 59.243 55.000 21.22 0.00 40.24 1.40
2494 12021 1.270358 GGCACCGAGGCTAGGAATAAG 60.270 57.143 21.22 5.69 40.24 1.73
2495 12022 1.874320 GCACCGAGGCTAGGAATAAGC 60.874 57.143 21.22 11.40 39.33 3.09
2501 12028 2.239291 GCTAGGAATAAGCCGCAGC 58.761 57.895 0.00 0.00 40.32 5.25
2502 12029 1.231296 GCTAGGAATAAGCCGCAGCC 61.231 60.000 0.00 0.00 41.25 4.85
2503 12030 0.946221 CTAGGAATAAGCCGCAGCCG 60.946 60.000 0.00 0.00 41.25 5.52
2666 12193 2.095919 GCGCGGTCAAAAACACTTATCT 60.096 45.455 8.83 0.00 0.00 1.98
2838 12365 2.106332 CTGTACATCCGCGACCCC 59.894 66.667 8.23 0.00 0.00 4.95
2839 12366 3.441011 CTGTACATCCGCGACCCCC 62.441 68.421 8.23 0.00 0.00 5.40
2913 13108 4.011698 CACACACATTCCCATGAAGATGA 58.988 43.478 0.00 0.00 33.05 2.92
2921 13116 4.220693 TCCCATGAAGATGACGTTGAAT 57.779 40.909 0.00 0.00 0.00 2.57
2967 13162 2.182181 ATGATGCGGTGCGTGATGG 61.182 57.895 0.00 0.00 0.00 3.51
3155 13350 5.479724 TGGGCATGATTTTGATGAACTTGTA 59.520 36.000 0.00 0.00 0.00 2.41
3189 13384 9.651913 ACTTTTATTCATCAACTTGTTTGTGTT 57.348 25.926 0.00 0.00 36.49 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.129815 ACAGGGTACAAGTTCAACTAGTTCA 59.870 40.000 4.77 0.00 0.00 3.18
4 5 5.625568 ACAGGGTACAAGTTCAACTAGTT 57.374 39.130 1.12 1.12 0.00 2.24
5 6 5.625568 AACAGGGTACAAGTTCAACTAGT 57.374 39.130 0.00 0.00 0.00 2.57
6 7 7.159372 ACATAACAGGGTACAAGTTCAACTAG 58.841 38.462 0.00 0.00 0.00 2.57
8 9 5.937111 ACATAACAGGGTACAAGTTCAACT 58.063 37.500 0.00 0.00 0.00 3.16
9 10 6.628919 AACATAACAGGGTACAAGTTCAAC 57.371 37.500 0.00 0.00 0.00 3.18
10 11 7.994334 AGTTAACATAACAGGGTACAAGTTCAA 59.006 33.333 8.61 0.00 0.00 2.69
11 12 7.511268 AGTTAACATAACAGGGTACAAGTTCA 58.489 34.615 8.61 0.00 0.00 3.18
12 13 7.974482 AGTTAACATAACAGGGTACAAGTTC 57.026 36.000 8.61 0.00 0.00 3.01
13 14 7.994334 TGAAGTTAACATAACAGGGTACAAGTT 59.006 33.333 8.61 0.00 0.00 2.66
14 15 7.511268 TGAAGTTAACATAACAGGGTACAAGT 58.489 34.615 8.61 0.00 0.00 3.16
15 16 7.972832 TGAAGTTAACATAACAGGGTACAAG 57.027 36.000 8.61 0.00 0.00 3.16
16 17 7.940137 ACATGAAGTTAACATAACAGGGTACAA 59.060 33.333 8.61 0.00 0.00 2.41
17 18 7.455058 ACATGAAGTTAACATAACAGGGTACA 58.545 34.615 8.61 0.00 0.00 2.90
18 19 7.822822 AGACATGAAGTTAACATAACAGGGTAC 59.177 37.037 8.61 0.00 0.00 3.34
19 20 7.913789 AGACATGAAGTTAACATAACAGGGTA 58.086 34.615 8.61 0.00 0.00 3.69
20 21 6.779860 AGACATGAAGTTAACATAACAGGGT 58.220 36.000 8.61 5.16 0.00 4.34
21 22 8.964476 ATAGACATGAAGTTAACATAACAGGG 57.036 34.615 8.61 2.44 0.00 4.45
28 29 9.725019 TGACAGAAATAGACATGAAGTTAACAT 57.275 29.630 8.61 0.00 0.00 2.71
29 30 9.208022 CTGACAGAAATAGACATGAAGTTAACA 57.792 33.333 8.61 0.00 0.00 2.41
30 31 9.209175 ACTGACAGAAATAGACATGAAGTTAAC 57.791 33.333 10.08 0.00 0.00 2.01
31 32 9.778741 AACTGACAGAAATAGACATGAAGTTAA 57.221 29.630 10.08 0.00 0.00 2.01
32 33 9.424319 GAACTGACAGAAATAGACATGAAGTTA 57.576 33.333 10.08 0.00 0.00 2.24
33 34 7.116948 CGAACTGACAGAAATAGACATGAAGTT 59.883 37.037 10.08 0.00 0.00 2.66
34 35 6.587990 CGAACTGACAGAAATAGACATGAAGT 59.412 38.462 10.08 0.00 0.00 3.01
35 36 6.035435 CCGAACTGACAGAAATAGACATGAAG 59.965 42.308 10.08 0.00 0.00 3.02
36 37 5.869344 CCGAACTGACAGAAATAGACATGAA 59.131 40.000 10.08 0.00 0.00 2.57
37 38 5.047306 ACCGAACTGACAGAAATAGACATGA 60.047 40.000 10.08 0.00 0.00 3.07
38 39 5.171476 ACCGAACTGACAGAAATAGACATG 58.829 41.667 10.08 0.00 0.00 3.21
39 40 5.407407 ACCGAACTGACAGAAATAGACAT 57.593 39.130 10.08 0.00 0.00 3.06
40 41 4.866508 ACCGAACTGACAGAAATAGACA 57.133 40.909 10.08 0.00 0.00 3.41
41 42 7.046862 GTTAACCGAACTGACAGAAATAGAC 57.953 40.000 10.08 0.00 34.96 2.59
55 56 4.787598 TCGACTAGTTCAGTTAACCGAAC 58.212 43.478 21.91 21.91 41.48 3.95
56 57 5.437289 TTCGACTAGTTCAGTTAACCGAA 57.563 39.130 0.88 0.37 37.72 4.30
57 58 5.181811 TGATTCGACTAGTTCAGTTAACCGA 59.818 40.000 0.88 0.00 37.72 4.69
58 59 5.396484 TGATTCGACTAGTTCAGTTAACCG 58.604 41.667 0.88 0.00 37.72 4.44
59 60 7.829378 AATGATTCGACTAGTTCAGTTAACC 57.171 36.000 0.88 0.00 37.72 2.85
60 61 9.141400 AGAAATGATTCGACTAGTTCAGTTAAC 57.859 33.333 7.70 0.00 40.63 2.01
61 62 9.706691 AAGAAATGATTCGACTAGTTCAGTTAA 57.293 29.630 7.70 0.00 40.63 2.01
63 64 9.706691 TTAAGAAATGATTCGACTAGTTCAGTT 57.293 29.630 7.50 7.50 40.63 3.16
64 65 9.877178 ATTAAGAAATGATTCGACTAGTTCAGT 57.123 29.630 0.00 0.00 40.63 3.41
66 67 9.653287 ACATTAAGAAATGATTCGACTAGTTCA 57.347 29.630 0.00 0.00 44.50 3.18
70 71 9.214953 GCAAACATTAAGAAATGATTCGACTAG 57.785 33.333 5.18 0.00 44.50 2.57
71 72 8.181573 GGCAAACATTAAGAAATGATTCGACTA 58.818 33.333 5.18 0.00 44.50 2.59
72 73 7.029563 GGCAAACATTAAGAAATGATTCGACT 58.970 34.615 5.18 0.00 44.50 4.18
73 74 6.806249 TGGCAAACATTAAGAAATGATTCGAC 59.194 34.615 5.18 0.00 44.50 4.20
74 75 6.806249 GTGGCAAACATTAAGAAATGATTCGA 59.194 34.615 5.18 0.00 44.50 3.71
75 76 6.585702 TGTGGCAAACATTAAGAAATGATTCG 59.414 34.615 5.18 0.00 44.50 3.34
76 77 7.887996 TGTGGCAAACATTAAGAAATGATTC 57.112 32.000 5.18 0.00 44.50 2.52
77 78 8.674263 TTTGTGGCAAACATTAAGAAATGATT 57.326 26.923 5.18 0.00 44.50 2.57
78 79 8.674263 TTTTGTGGCAAACATTAAGAAATGAT 57.326 26.923 5.18 0.00 44.50 2.45
79 80 8.498054 TTTTTGTGGCAAACATTAAGAAATGA 57.502 26.923 5.18 0.00 44.50 2.57
126 127 7.277396 CCCTGGCTCAAATGATTGATATTTTT 58.723 34.615 0.00 0.00 44.29 1.94
127 128 6.687139 GCCCTGGCTCAAATGATTGATATTTT 60.687 38.462 0.00 0.00 44.29 1.82
128 129 5.221581 GCCCTGGCTCAAATGATTGATATTT 60.222 40.000 0.00 0.00 44.29 1.40
129 130 4.282703 GCCCTGGCTCAAATGATTGATATT 59.717 41.667 0.00 0.00 44.29 1.28
130 131 3.830755 GCCCTGGCTCAAATGATTGATAT 59.169 43.478 0.00 0.00 44.29 1.63
131 132 3.225104 GCCCTGGCTCAAATGATTGATA 58.775 45.455 0.00 0.00 44.29 2.15
132 133 2.037144 GCCCTGGCTCAAATGATTGAT 58.963 47.619 0.00 0.00 44.29 2.57
133 134 1.477553 GCCCTGGCTCAAATGATTGA 58.522 50.000 0.00 0.00 43.18 2.57
148 149 2.093447 CGACATGGAGTTTCTTAGCCCT 60.093 50.000 0.00 0.00 0.00 5.19
169 170 0.804989 CATCTTCGGCACCTGAAACC 59.195 55.000 0.00 0.00 0.00 3.27
212 213 0.469917 AGCATTGGCCTACGCATACT 59.530 50.000 8.18 0.00 42.56 2.12
240 245 5.532406 GCTAAGTTTGGCATATCATGAAGGA 59.468 40.000 0.00 0.00 34.50 3.36
243 248 7.259882 CAAAGCTAAGTTTGGCATATCATGAA 58.740 34.615 0.00 0.00 37.10 2.57
274 279 2.951642 ACAAACGGCATATTGGATGGAG 59.048 45.455 0.00 0.00 0.00 3.86
359 365 2.669133 CCTGGTTCTGGGCATCCGA 61.669 63.158 0.00 0.00 35.24 4.55
361 367 1.077429 GTCCTGGTTCTGGGCATCC 60.077 63.158 0.00 0.00 0.00 3.51
409 422 0.177604 CTCTCCGGCTGAGCTTTGAT 59.822 55.000 3.72 0.00 41.18 2.57
410 423 1.593787 CTCTCCGGCTGAGCTTTGA 59.406 57.895 3.72 0.00 41.18 2.69
606 1153 1.145598 AGATGGATGCTGCGGACTG 59.854 57.895 0.00 0.00 0.00 3.51
607 1154 1.145598 CAGATGGATGCTGCGGACT 59.854 57.895 0.00 0.00 0.00 3.85
653 1201 4.857037 GTCAACATATCCGGTTTGAAAAGC 59.143 41.667 0.00 0.00 0.00 3.51
671 1219 7.492524 TGATGTGAATAGATACTCTGGTCAAC 58.507 38.462 0.00 0.00 0.00 3.18
725 1273 4.167892 AGAATGCCCTCAACATAACCCATA 59.832 41.667 0.00 0.00 0.00 2.74
850 3936 2.290641 ACTTTCTTTTTCGCAGCATCGT 59.709 40.909 0.00 0.00 0.00 3.73
888 3974 4.638865 ACAGTACAGTATACATGAGCGACA 59.361 41.667 5.50 0.00 0.00 4.35
908 4042 0.456221 CGGGCCTAGACAGTACACAG 59.544 60.000 0.84 0.00 0.00 3.66
909 4043 0.251474 ACGGGCCTAGACAGTACACA 60.251 55.000 0.84 0.00 0.00 3.72
910 4044 1.674962 CTACGGGCCTAGACAGTACAC 59.325 57.143 0.84 0.00 0.00 2.90
911 4045 2.020694 GCTACGGGCCTAGACAGTACA 61.021 57.143 0.84 0.00 34.27 2.90
912 4046 0.667453 GCTACGGGCCTAGACAGTAC 59.333 60.000 0.84 0.00 34.27 2.73
914 4048 3.936535 GCTACGGGCCTAGACAGT 58.063 61.111 0.84 0.00 34.27 3.55
924 4058 1.505425 GGCTATTTAACGGCTACGGG 58.495 55.000 0.00 0.00 46.48 5.28
928 4062 1.269206 CGGACGGCTATTTAACGGCTA 60.269 52.381 0.00 0.00 35.60 3.93
930 4064 0.807275 ACGGACGGCTATTTAACGGC 60.807 55.000 0.00 0.00 34.22 5.68
933 4067 4.934075 AAGAAACGGACGGCTATTTAAC 57.066 40.909 0.00 0.00 0.00 2.01
969 5498 5.345202 CAGTAGTAGTCGTTGTGATTGGTTC 59.655 44.000 0.00 0.00 0.00 3.62
976 5513 1.198408 CGGCAGTAGTAGTCGTTGTGA 59.802 52.381 0.00 0.00 0.00 3.58
985 5529 2.165641 TGTTCATGGTCGGCAGTAGTAG 59.834 50.000 0.00 0.00 0.00 2.57
1003 5584 2.149578 GTGAGCATCTGCAGAGTTGTT 58.850 47.619 22.96 14.25 45.16 2.83
1012 5593 2.404995 GGCACCTGTGAGCATCTGC 61.405 63.158 0.51 0.00 42.49 4.26
1101 6113 0.390472 TGCAATGTGGCATGCACATG 60.390 50.000 25.95 21.24 46.87 3.21
1102 6114 1.976112 TGCAATGTGGCATGCACAT 59.024 47.368 21.36 21.88 46.87 3.21
1159 6204 0.108615 AAATCCTCGGTCGTCAGCAG 60.109 55.000 0.00 0.00 0.00 4.24
1176 6221 1.764134 AGTACGGACACACCCAAGAAA 59.236 47.619 0.00 0.00 34.64 2.52
1190 6239 2.048597 TGACGGCTGCAAGTACGG 60.049 61.111 0.50 0.00 39.96 4.02
1196 6245 2.591429 CACCTGTGACGGCTGCAA 60.591 61.111 0.50 0.00 0.00 4.08
1232 6281 0.394352 GGTGCTCCATCCGGTTGAAT 60.394 55.000 14.27 0.00 0.00 2.57
1925 9202 1.078848 GCTGGTCTTCATCAGCGGT 60.079 57.895 0.00 0.00 45.31 5.68
2145 11626 3.753434 CTCTCGCTGCCTCCACGT 61.753 66.667 0.00 0.00 0.00 4.49
2232 11713 4.063967 TCAGCATCGCCGGTCGTT 62.064 61.111 16.00 7.03 39.67 3.85
2334 11856 2.674420 GGTACTGTAGCTACCCATCCA 58.326 52.381 21.01 0.28 0.00 3.41
2341 11863 4.687948 TCGATCATACGGTACTGTAGCTAC 59.312 45.833 19.00 17.30 0.00 3.58
2347 11869 2.031314 CACGTCGATCATACGGTACTGT 59.969 50.000 12.92 12.92 44.48 3.55
2349 11871 2.031314 CACACGTCGATCATACGGTACT 59.969 50.000 18.54 0.00 44.48 2.73
2355 11877 1.135199 ACCACCACACGTCGATCATAC 60.135 52.381 0.00 0.00 0.00 2.39
2358 11880 1.287815 GACCACCACACGTCGATCA 59.712 57.895 0.00 0.00 0.00 2.92
2388 11912 6.256912 ACTTACTTCCAACGAAACAAAACA 57.743 33.333 0.00 0.00 0.00 2.83
2413 11940 4.222336 TGACCCACATTTGAAATTCAGGT 58.778 39.130 2.53 2.53 0.00 4.00
2448 11975 2.093447 CGCATCTCTACCTTTGTTCCCT 60.093 50.000 0.00 0.00 0.00 4.20
2459 11986 0.601311 GTGCCCCATCGCATCTCTAC 60.601 60.000 0.00 0.00 41.70 2.59
2461 11988 2.507944 GTGCCCCATCGCATCTCT 59.492 61.111 0.00 0.00 41.70 3.10
2462 11989 2.592861 GGTGCCCCATCGCATCTC 60.593 66.667 0.00 0.00 41.70 2.75
2464 11991 4.545706 TCGGTGCCCCATCGCATC 62.546 66.667 0.00 0.00 41.70 3.91
2465 11992 4.552365 CTCGGTGCCCCATCGCAT 62.552 66.667 0.00 0.00 41.70 4.73
2469 11996 3.161450 TAGCCTCGGTGCCCCATC 61.161 66.667 0.00 0.00 0.00 3.51
2470 11997 3.164269 CTAGCCTCGGTGCCCCAT 61.164 66.667 0.00 0.00 0.00 4.00
2473 12000 1.119574 TATTCCTAGCCTCGGTGCCC 61.120 60.000 0.00 0.00 0.00 5.36
2474 12001 0.756903 TTATTCCTAGCCTCGGTGCC 59.243 55.000 0.00 0.00 0.00 5.01
2475 12002 1.874320 GCTTATTCCTAGCCTCGGTGC 60.874 57.143 0.00 0.00 32.45 5.01
2476 12003 2.156343 GCTTATTCCTAGCCTCGGTG 57.844 55.000 0.00 0.00 32.45 4.94
2483 12010 1.231296 GGCTGCGGCTTATTCCTAGC 61.231 60.000 18.85 0.00 38.73 3.42
2484 12011 0.946221 CGGCTGCGGCTTATTCCTAG 60.946 60.000 18.85 0.00 38.73 3.02
2485 12012 1.069090 CGGCTGCGGCTTATTCCTA 59.931 57.895 18.85 0.00 38.73 2.94
2486 12013 2.203070 CGGCTGCGGCTTATTCCT 60.203 61.111 18.85 0.00 38.73 3.36
2487 12014 3.279875 CCGGCTGCGGCTTATTCC 61.280 66.667 18.85 0.00 38.73 3.01
2501 12028 4.570663 CTAACTCGCCTCCGCCGG 62.571 72.222 0.00 0.00 0.00 6.13
2502 12029 3.471244 CTCTAACTCGCCTCCGCCG 62.471 68.421 0.00 0.00 0.00 6.46
2503 12030 2.413765 CTCTAACTCGCCTCCGCC 59.586 66.667 0.00 0.00 0.00 6.13
2504 12031 2.278923 GCTCTAACTCGCCTCCGC 60.279 66.667 0.00 0.00 0.00 5.54
2505 12032 0.318275 GATGCTCTAACTCGCCTCCG 60.318 60.000 0.00 0.00 0.00 4.63
2506 12033 1.000717 GAGATGCTCTAACTCGCCTCC 60.001 57.143 0.00 0.00 0.00 4.30
2507 12034 1.000717 GGAGATGCTCTAACTCGCCTC 60.001 57.143 0.00 0.00 0.00 4.70
2508 12035 1.036707 GGAGATGCTCTAACTCGCCT 58.963 55.000 0.00 0.00 0.00 5.52
2509 12036 0.747255 TGGAGATGCTCTAACTCGCC 59.253 55.000 0.00 0.00 0.00 5.54
2510 12037 2.197577 GTTGGAGATGCTCTAACTCGC 58.802 52.381 14.07 0.00 44.69 5.03
2511 12038 3.443037 CTGTTGGAGATGCTCTAACTCG 58.557 50.000 19.61 10.39 46.98 4.18
2512 12039 3.194062 GCTGTTGGAGATGCTCTAACTC 58.806 50.000 19.61 10.89 46.98 3.01
2513 12040 2.093235 GGCTGTTGGAGATGCTCTAACT 60.093 50.000 19.61 0.00 46.98 2.24
2629 12156 2.437002 GCGCCCAACCCGTTATCA 60.437 61.111 0.00 0.00 0.00 2.15
2666 12193 2.395360 GCTCCAAATACACCGCGCA 61.395 57.895 8.75 0.00 0.00 6.09
2913 13108 3.190535 GGTGTTGGCAAGATATTCAACGT 59.809 43.478 0.00 0.00 41.45 3.99
2921 13116 0.390603 CCGACGGTGTTGGCAAGATA 60.391 55.000 5.48 0.00 29.56 1.98
2967 13162 0.034059 CCTATCCTCATCACGCACCC 59.966 60.000 0.00 0.00 0.00 4.61
3026 13221 3.506455 TCTTCGTCTTCGTCCTCATCTTT 59.494 43.478 0.00 0.00 38.33 2.52
3155 13350 7.472334 AGTTGATGAATAAAAGTTCATGCCT 57.528 32.000 6.84 0.00 46.02 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.