Multiple sequence alignment - TraesCS3B01G077600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G077600 chr3B 100.000 2387 0 0 1 2387 48669453 48667067 0.000000e+00 4409
1 TraesCS3B01G077600 chr3B 95.868 121 3 2 2035 2155 339415829 339415711 6.730000e-46 195
2 TraesCS3B01G077600 chr2D 90.794 2053 175 13 1 2046 644976657 644974612 0.000000e+00 2732
3 TraesCS3B01G077600 chr2D 91.072 1725 140 13 1 1720 644982147 644980432 0.000000e+00 2320
4 TraesCS3B01G077600 chr2D 89.051 1443 134 15 612 2046 644924734 644923308 0.000000e+00 1768
5 TraesCS3B01G077600 chr2D 82.051 741 122 8 807 1538 644733763 644733025 2.610000e-174 621
6 TraesCS3B01G077600 chr2D 82.065 368 58 8 1 366 196435369 196435008 8.290000e-80 307
7 TraesCS3B01G077600 chr2B 91.452 1357 112 4 691 2046 790612608 790613961 0.000000e+00 1860
8 TraesCS3B01G077600 chr2B 89.390 1442 134 15 612 2046 790623352 790624781 0.000000e+00 1797
9 TraesCS3B01G077600 chr2B 96.694 121 3 1 2035 2155 215839114 215838995 1.450000e-47 200
10 TraesCS3B01G077600 chr2A 88.912 1443 144 15 612 2046 770291246 770289812 0.000000e+00 1764
11 TraesCS3B01G077600 chr2A 91.529 968 79 3 1079 2046 770343037 770342073 0.000000e+00 1330
12 TraesCS3B01G077600 chr2A 88.539 698 71 8 1 694 770345591 770344899 0.000000e+00 837
13 TraesCS3B01G077600 chr2A 80.940 745 127 9 807 1538 770023709 770022967 2.060000e-160 575
14 TraesCS3B01G077600 chr2A 92.123 292 20 3 689 978 770343324 770343034 2.210000e-110 409
15 TraesCS3B01G077600 chr5B 85.135 370 48 6 1 370 330005030 330004668 2.900000e-99 372
16 TraesCS3B01G077600 chr5B 84.367 371 52 5 1 370 330414838 330414473 2.260000e-95 359
17 TraesCS3B01G077600 chr5B 96.694 121 1 3 2035 2155 41284700 41284583 5.200000e-47 198
18 TraesCS3B01G077600 chr5B 99.083 109 0 1 2047 2155 13503786 13503679 6.730000e-46 195
19 TraesCS3B01G077600 chr4A 84.140 372 49 8 1 367 384393941 384393575 3.780000e-93 351
20 TraesCS3B01G077600 chr3D 82.415 381 56 10 1 376 609994681 609994307 2.960000e-84 322
21 TraesCS3B01G077600 chr4B 82.016 367 61 5 3 368 68089119 68088757 8.290000e-80 307
22 TraesCS3B01G077600 chr5D 99.115 113 0 1 2043 2155 362064381 362064492 4.020000e-48 202
23 TraesCS3B01G077600 chr5A 98.261 115 0 2 2041 2155 705837319 705837431 1.450000e-47 200
24 TraesCS3B01G077600 chr6B 96.694 121 0 3 2035 2155 606303275 606303159 5.200000e-47 198
25 TraesCS3B01G077600 chr7A 95.902 122 1 4 2035 2155 94787469 94787587 6.730000e-46 195
26 TraesCS3B01G077600 chr1B 92.593 135 6 4 2022 2155 231670838 231670969 8.710000e-45 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G077600 chr3B 48667067 48669453 2386 True 4409.000000 4409 100.000000 1 2387 1 chr3B.!!$R1 2386
1 TraesCS3B01G077600 chr2D 644974612 644982147 7535 True 2526.000000 2732 90.933000 1 2046 2 chr2D.!!$R4 2045
2 TraesCS3B01G077600 chr2D 644923308 644924734 1426 True 1768.000000 1768 89.051000 612 2046 1 chr2D.!!$R3 1434
3 TraesCS3B01G077600 chr2D 644733025 644733763 738 True 621.000000 621 82.051000 807 1538 1 chr2D.!!$R2 731
4 TraesCS3B01G077600 chr2B 790612608 790613961 1353 False 1860.000000 1860 91.452000 691 2046 1 chr2B.!!$F1 1355
5 TraesCS3B01G077600 chr2B 790623352 790624781 1429 False 1797.000000 1797 89.390000 612 2046 1 chr2B.!!$F2 1434
6 TraesCS3B01G077600 chr2A 770289812 770291246 1434 True 1764.000000 1764 88.912000 612 2046 1 chr2A.!!$R2 1434
7 TraesCS3B01G077600 chr2A 770342073 770345591 3518 True 858.666667 1330 90.730333 1 2046 3 chr2A.!!$R3 2045
8 TraesCS3B01G077600 chr2A 770022967 770023709 742 True 575.000000 575 80.940000 807 1538 1 chr2A.!!$R1 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 428 0.109342 ACTCAAGTTCCCCAGCACAG 59.891 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2287 9384 0.034337 TCCTTTTTGACCGAGGTCCG 59.966 55.0 18.57 3.44 43.97 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 80 6.657117 TGAAACATAGCATGCCAACTTTAGTA 59.343 34.615 15.66 0.00 0.00 1.82
82 84 8.383318 ACATAGCATGCCAACTTTAGTATAAG 57.617 34.615 15.66 0.00 0.00 1.73
85 87 5.829924 AGCATGCCAACTTTAGTATAAGCAT 59.170 36.000 15.66 0.00 40.15 3.79
87 89 6.418819 GCATGCCAACTTTAGTATAAGCATTG 59.581 38.462 6.36 0.00 37.60 2.82
91 93 7.175816 TGCCAACTTTAGTATAAGCATTGTGAA 59.824 33.333 0.00 0.00 0.00 3.18
161 163 8.006590 GTCGTCAAAACATAGCAATATGAGATC 58.993 37.037 2.41 0.00 0.00 2.75
184 186 7.215719 TCTAGTTTTGAAGATCTCGTTGAGA 57.784 36.000 0.00 0.00 43.20 3.27
242 244 9.987272 AAAATTTCTATTTGGGAGAGAAAACAG 57.013 29.630 0.00 0.00 41.27 3.16
246 248 8.533569 TTCTATTTGGGAGAGAAAACAGTTTT 57.466 30.769 11.22 11.22 35.12 2.43
285 288 8.070171 CCAAAAATATTCTGCTAGTGTTATCCG 58.930 37.037 0.00 0.00 0.00 4.18
294 297 4.868171 TGCTAGTGTTATCCGTTTGATGTC 59.132 41.667 0.00 0.00 34.76 3.06
307 310 3.507103 TTGATGTCGCAAAATGGATGG 57.493 42.857 0.00 0.00 0.00 3.51
321 324 1.847737 TGGATGGTAATAGGGGCGTTT 59.152 47.619 0.00 0.00 0.00 3.60
339 342 0.950836 TTGGACCATGTTGCTTCGTG 59.049 50.000 0.00 0.00 0.00 4.35
340 343 0.888736 TGGACCATGTTGCTTCGTGG 60.889 55.000 15.02 15.02 46.51 4.94
418 421 5.221722 TGCTCATATCATACTCAAGTTCCCC 60.222 44.000 0.00 0.00 0.00 4.81
425 428 0.109342 ACTCAAGTTCCCCAGCACAG 59.891 55.000 0.00 0.00 0.00 3.66
445 448 5.995282 CACAGGAAAGATAAGTGGTTGTGTA 59.005 40.000 0.00 0.00 31.37 2.90
481 484 8.912988 CCTAAAATTTGGCACCAAGATAATAGA 58.087 33.333 1.79 0.00 37.24 1.98
568 571 8.853077 TTGTATTTCCATGATAGCAATCTAGG 57.147 34.615 0.00 0.00 32.93 3.02
726 2309 6.382869 AATACAACCATCTAGAAAGCATGC 57.617 37.500 10.51 10.51 0.00 4.06
735 2318 7.093814 ACCATCTAGAAAGCATGCATTTAAACA 60.094 33.333 21.98 0.00 0.00 2.83
822 2407 3.094484 TGCCCCCTATAAAAGGTTGTG 57.906 47.619 0.00 0.00 44.90 3.33
823 2408 1.754803 GCCCCCTATAAAAGGTTGTGC 59.245 52.381 0.00 0.00 44.90 4.57
824 2409 2.021457 CCCCCTATAAAAGGTTGTGCG 58.979 52.381 0.00 0.00 44.90 5.34
918 2504 5.514500 AAGCACCCCTATCTCACTTTTTA 57.486 39.130 0.00 0.00 0.00 1.52
932 2522 5.935945 TCACTTTTTAGGATCCACTCACAA 58.064 37.500 15.82 0.00 0.00 3.33
979 2570 9.875708 ACATAACTATCTCAAGATCTAGAACCT 57.124 33.333 0.00 0.00 36.05 3.50
1037 2628 4.849813 TCCTCCTCATCATCATTGTTGT 57.150 40.909 0.00 0.00 0.00 3.32
1193 8277 2.029964 GGCGGTGTTGGAGTTCGA 59.970 61.111 0.00 0.00 0.00 3.71
1285 8369 4.155280 TGAACTACGAACTCATCATCGACA 59.845 41.667 1.84 0.00 41.43 4.35
1356 8440 1.120530 AGGAGTGGACTCACAAACGT 58.879 50.000 8.99 0.00 45.91 3.99
1368 8452 0.039074 ACAAACGTCAGCTCCTCTCG 60.039 55.000 0.00 0.00 0.00 4.04
1440 8524 4.277921 TGTGATGTTGCAGATTTGTTAGCA 59.722 37.500 0.00 0.00 34.79 3.49
1441 8525 5.047872 TGTGATGTTGCAGATTTGTTAGCAT 60.048 36.000 0.00 0.00 36.80 3.79
1447 8531 5.212532 TGCAGATTTGTTAGCATGGTTTT 57.787 34.783 1.12 0.00 31.05 2.43
1525 8617 5.114780 AGCATACATCTACAGCTTGACAAG 58.885 41.667 11.02 11.02 29.98 3.16
1651 8744 8.247562 GGTATTAGCACTAGATCGATCATTCTT 58.752 37.037 26.47 8.66 0.00 2.52
1788 8885 9.702494 ATGTAGTATAAGTTAATTCGGCCTAAC 57.298 33.333 0.00 2.51 0.00 2.34
1796 8893 7.370905 AGTTAATTCGGCCTAACTATACCTT 57.629 36.000 12.23 0.00 36.75 3.50
1807 8904 6.931840 GCCTAACTATACCTTCAATCTCCAAG 59.068 42.308 0.00 0.00 0.00 3.61
1811 8908 1.813513 ACCTTCAATCTCCAAGCACG 58.186 50.000 0.00 0.00 0.00 5.34
1812 8909 1.347707 ACCTTCAATCTCCAAGCACGA 59.652 47.619 0.00 0.00 0.00 4.35
1823 8920 1.133598 CCAAGCACGATCACGGTACTA 59.866 52.381 0.00 0.00 44.46 1.82
1857 8954 0.531532 GTGATGATGCGGAGTGGAGG 60.532 60.000 0.00 0.00 0.00 4.30
1882 8979 1.340248 GTGACGGTGACAAAGGAGAGA 59.660 52.381 0.00 0.00 0.00 3.10
1887 8984 4.461198 ACGGTGACAAAGGAGAGAAATTT 58.539 39.130 0.00 0.00 0.00 1.82
1982 9079 4.532126 TGCTTTAGAGGGATGTCTTTCTCA 59.468 41.667 0.00 0.00 0.00 3.27
1999 9096 4.236527 TCTCAGATGGCAGTAGTCACTA 57.763 45.455 0.00 0.00 32.21 2.74
2027 9124 4.178956 AGAAAGAAAGGTTTGGTGGCTA 57.821 40.909 0.00 0.00 0.00 3.93
2046 9143 8.594550 GGTGGCTAGAGGAGAAAAATACATATA 58.405 37.037 0.00 0.00 0.00 0.86
2047 9144 9.425577 GTGGCTAGAGGAGAAAAATACATATAC 57.574 37.037 0.00 0.00 0.00 1.47
2048 9145 9.154632 TGGCTAGAGGAGAAAAATACATATACA 57.845 33.333 0.00 0.00 0.00 2.29
2049 9146 9.998106 GGCTAGAGGAGAAAAATACATATACAA 57.002 33.333 0.00 0.00 0.00 2.41
2065 9162 8.401046 ACATATACAACAACAACAACAACAAC 57.599 30.769 0.00 0.00 0.00 3.32
2066 9163 8.029522 ACATATACAACAACAACAACAACAACA 58.970 29.630 0.00 0.00 0.00 3.33
2067 9164 8.864024 CATATACAACAACAACAACAACAACAA 58.136 29.630 0.00 0.00 0.00 2.83
2068 9165 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2069 9166 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2070 9167 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2071 9168 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2072 9169 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2073 9170 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2074 9171 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2075 9172 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2076 9173 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2077 9174 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
2078 9175 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
2079 9176 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
2080 9177 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
2081 9178 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
2082 9179 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
2083 9180 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
2084 9181 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
2085 9182 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
2086 9183 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
2087 9184 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
2088 9185 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
2089 9186 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
2090 9187 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
2091 9188 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
2092 9189 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
2093 9190 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
2094 9191 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
2095 9192 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
2096 9193 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
2097 9194 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
2098 9195 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
2099 9196 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
2108 9205 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
2109 9206 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
2110 9207 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
2111 9208 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
2112 9209 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
2113 9210 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
2114 9211 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
2115 9212 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
2116 9213 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
2117 9214 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
2118 9215 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
2119 9216 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
2134 9231 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
2135 9232 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
2136 9233 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
2137 9234 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
2138 9235 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
2139 9236 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
2140 9237 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
2141 9238 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
2142 9239 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
2143 9240 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
2144 9241 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
2145 9242 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
2154 9251 2.112898 CCAACTCATGGCTCATGGC 58.887 57.895 13.17 0.00 43.80 4.40
2155 9252 0.395311 CCAACTCATGGCTCATGGCT 60.395 55.000 13.17 0.00 43.80 4.75
2156 9253 1.022735 CAACTCATGGCTCATGGCTC 58.977 55.000 13.17 0.00 41.66 4.70
2157 9254 0.917533 AACTCATGGCTCATGGCTCT 59.082 50.000 13.17 0.00 41.66 4.09
2158 9255 1.798626 ACTCATGGCTCATGGCTCTA 58.201 50.000 13.17 0.00 41.66 2.43
2159 9256 1.693062 ACTCATGGCTCATGGCTCTAG 59.307 52.381 13.17 7.10 41.66 2.43
2160 9257 1.969208 CTCATGGCTCATGGCTCTAGA 59.031 52.381 13.17 0.00 41.66 2.43
2161 9258 1.969208 TCATGGCTCATGGCTCTAGAG 59.031 52.381 15.85 15.85 41.66 2.43
2162 9259 1.002201 CATGGCTCATGGCTCTAGAGG 59.998 57.143 21.23 4.70 38.11 3.69
2163 9260 0.262876 TGGCTCATGGCTCTAGAGGA 59.737 55.000 21.23 8.83 41.46 3.71
2164 9261 0.968405 GGCTCATGGCTCTAGAGGAG 59.032 60.000 21.23 17.99 44.49 3.69
2165 9262 1.480312 GGCTCATGGCTCTAGAGGAGA 60.480 57.143 21.23 0.00 44.45 3.71
2166 9263 2.315176 GCTCATGGCTCTAGAGGAGAA 58.685 52.381 21.23 0.00 44.45 2.87
2167 9264 2.697751 GCTCATGGCTCTAGAGGAGAAA 59.302 50.000 21.23 0.00 44.45 2.52
2168 9265 3.133721 GCTCATGGCTCTAGAGGAGAAAA 59.866 47.826 21.23 0.00 44.45 2.29
2169 9266 4.383552 GCTCATGGCTCTAGAGGAGAAAAA 60.384 45.833 21.23 0.00 44.45 1.94
2170 9267 5.687177 GCTCATGGCTCTAGAGGAGAAAAAT 60.687 44.000 21.23 0.00 44.45 1.82
2171 9268 6.463614 GCTCATGGCTCTAGAGGAGAAAAATA 60.464 42.308 21.23 0.00 44.45 1.40
2172 9269 6.821388 TCATGGCTCTAGAGGAGAAAAATAC 58.179 40.000 21.23 0.30 44.45 1.89
2173 9270 6.384015 TCATGGCTCTAGAGGAGAAAAATACA 59.616 38.462 21.23 0.00 44.45 2.29
2174 9271 6.814954 TGGCTCTAGAGGAGAAAAATACAT 57.185 37.500 21.23 0.00 44.45 2.29
2175 9272 7.914427 TGGCTCTAGAGGAGAAAAATACATA 57.086 36.000 21.23 0.00 44.45 2.29
2176 9273 8.497910 TGGCTCTAGAGGAGAAAAATACATAT 57.502 34.615 21.23 0.00 44.45 1.78
2177 9274 8.370940 TGGCTCTAGAGGAGAAAAATACATATG 58.629 37.037 21.23 0.00 44.45 1.78
2178 9275 8.371699 GGCTCTAGAGGAGAAAAATACATATGT 58.628 37.037 21.23 13.93 44.45 2.29
2179 9276 9.202273 GCTCTAGAGGAGAAAAATACATATGTG 57.798 37.037 21.23 0.00 44.45 3.21
2180 9277 9.202273 CTCTAGAGGAGAAAAATACATATGTGC 57.798 37.037 18.81 1.29 44.45 4.57
2181 9278 8.704668 TCTAGAGGAGAAAAATACATATGTGCA 58.295 33.333 18.81 0.00 0.00 4.57
2182 9279 9.499479 CTAGAGGAGAAAAATACATATGTGCAT 57.501 33.333 18.81 1.75 0.00 3.96
2183 9280 8.757982 AGAGGAGAAAAATACATATGTGCATT 57.242 30.769 18.81 8.24 0.00 3.56
2184 9281 9.851686 AGAGGAGAAAAATACATATGTGCATTA 57.148 29.630 18.81 0.00 0.00 1.90
2200 9297 7.517614 TGTGCATTAAAAATTAGACTGTGGA 57.482 32.000 0.00 0.00 0.00 4.02
2201 9298 8.121305 TGTGCATTAAAAATTAGACTGTGGAT 57.879 30.769 0.00 0.00 0.00 3.41
2202 9299 8.243426 TGTGCATTAAAAATTAGACTGTGGATC 58.757 33.333 0.00 0.00 0.00 3.36
2203 9300 8.462016 GTGCATTAAAAATTAGACTGTGGATCT 58.538 33.333 0.00 0.00 0.00 2.75
2204 9301 9.023962 TGCATTAAAAATTAGACTGTGGATCTT 57.976 29.630 0.00 0.00 0.00 2.40
2210 9307 9.667107 AAAAATTAGACTGTGGATCTTAATCGA 57.333 29.630 0.00 0.00 32.24 3.59
2211 9308 8.649973 AAATTAGACTGTGGATCTTAATCGAC 57.350 34.615 0.00 0.00 40.09 4.20
2212 9309 4.657436 AGACTGTGGATCTTAATCGACC 57.343 45.455 0.00 0.00 39.22 4.79
2213 9310 4.023980 AGACTGTGGATCTTAATCGACCA 58.976 43.478 0.00 0.00 39.22 4.02
2214 9311 4.651503 AGACTGTGGATCTTAATCGACCAT 59.348 41.667 0.00 0.00 39.22 3.55
2215 9312 4.697514 ACTGTGGATCTTAATCGACCATG 58.302 43.478 0.00 0.00 39.22 3.66
2216 9313 3.466836 TGTGGATCTTAATCGACCATGC 58.533 45.455 0.00 0.00 39.22 4.06
2217 9314 3.134623 TGTGGATCTTAATCGACCATGCT 59.865 43.478 0.00 0.00 39.22 3.79
2218 9315 4.343814 TGTGGATCTTAATCGACCATGCTA 59.656 41.667 0.00 0.00 39.22 3.49
2219 9316 5.012046 TGTGGATCTTAATCGACCATGCTAT 59.988 40.000 0.00 0.00 39.22 2.97
2220 9317 5.934625 GTGGATCTTAATCGACCATGCTATT 59.065 40.000 0.00 0.00 35.30 1.73
2221 9318 7.097192 GTGGATCTTAATCGACCATGCTATTA 58.903 38.462 0.00 0.00 35.30 0.98
2222 9319 7.766278 GTGGATCTTAATCGACCATGCTATTAT 59.234 37.037 0.00 0.00 35.30 1.28
2223 9320 8.977412 TGGATCTTAATCGACCATGCTATTATA 58.023 33.333 0.00 0.00 32.24 0.98
2224 9321 9.817809 GGATCTTAATCGACCATGCTATTATAA 57.182 33.333 0.00 0.00 32.24 0.98
2231 9328 9.520515 AATCGACCATGCTATTATAAATTTCCT 57.479 29.630 0.00 0.00 0.00 3.36
2233 9330 9.653287 TCGACCATGCTATTATAAATTTCCTAG 57.347 33.333 0.00 0.00 0.00 3.02
2234 9331 8.391106 CGACCATGCTATTATAAATTTCCTAGC 58.609 37.037 0.00 4.39 33.80 3.42
2235 9332 8.268850 ACCATGCTATTATAAATTTCCTAGCG 57.731 34.615 0.00 0.00 35.49 4.26
2236 9333 8.100791 ACCATGCTATTATAAATTTCCTAGCGA 58.899 33.333 0.00 0.00 35.49 4.93
2237 9334 8.607459 CCATGCTATTATAAATTTCCTAGCGAG 58.393 37.037 0.00 1.21 35.49 5.03
2238 9335 7.596749 TGCTATTATAAATTTCCTAGCGAGC 57.403 36.000 0.00 0.00 35.49 5.03
2239 9336 7.158697 TGCTATTATAAATTTCCTAGCGAGCA 58.841 34.615 0.00 0.26 35.49 4.26
2240 9337 7.659799 TGCTATTATAAATTTCCTAGCGAGCAA 59.340 33.333 0.00 0.00 35.49 3.91
2241 9338 8.504005 GCTATTATAAATTTCCTAGCGAGCAAA 58.496 33.333 0.00 0.00 0.00 3.68
2243 9340 8.677148 ATTATAAATTTCCTAGCGAGCAAAGA 57.323 30.769 0.00 0.00 0.00 2.52
2244 9341 4.954092 AAATTTCCTAGCGAGCAAAGAG 57.046 40.909 0.00 0.00 0.00 2.85
2245 9342 3.618690 ATTTCCTAGCGAGCAAAGAGT 57.381 42.857 0.00 0.00 0.00 3.24
2246 9343 4.737855 ATTTCCTAGCGAGCAAAGAGTA 57.262 40.909 0.00 0.00 0.00 2.59
2247 9344 3.784701 TTCCTAGCGAGCAAAGAGTAG 57.215 47.619 0.00 0.00 0.00 2.57
2248 9345 1.405821 TCCTAGCGAGCAAAGAGTAGC 59.594 52.381 0.00 0.00 0.00 3.58
2249 9346 1.407258 CCTAGCGAGCAAAGAGTAGCT 59.593 52.381 0.00 0.00 45.25 3.32
2250 9347 2.619177 CCTAGCGAGCAAAGAGTAGCTA 59.381 50.000 0.00 0.00 42.04 3.32
2251 9348 2.861462 AGCGAGCAAAGAGTAGCTAG 57.139 50.000 0.00 0.00 42.04 3.42
2252 9349 2.096248 AGCGAGCAAAGAGTAGCTAGT 58.904 47.619 0.00 0.00 42.04 2.57
2253 9350 2.494073 AGCGAGCAAAGAGTAGCTAGTT 59.506 45.455 1.78 0.00 42.04 2.24
2254 9351 3.695060 AGCGAGCAAAGAGTAGCTAGTTA 59.305 43.478 1.78 0.00 42.04 2.24
2255 9352 3.792421 GCGAGCAAAGAGTAGCTAGTTAC 59.208 47.826 8.59 8.59 42.04 2.50
2256 9353 4.439016 GCGAGCAAAGAGTAGCTAGTTACT 60.439 45.833 18.09 18.09 42.04 2.24
2257 9354 5.642686 CGAGCAAAGAGTAGCTAGTTACTT 58.357 41.667 18.92 7.85 42.04 2.24
2258 9355 5.740099 CGAGCAAAGAGTAGCTAGTTACTTC 59.260 44.000 18.92 11.05 42.04 3.01
2259 9356 6.591750 AGCAAAGAGTAGCTAGTTACTTCA 57.408 37.500 18.92 0.00 39.78 3.02
2260 9357 7.176589 AGCAAAGAGTAGCTAGTTACTTCAT 57.823 36.000 18.92 7.32 39.78 2.57
2261 9358 8.294954 AGCAAAGAGTAGCTAGTTACTTCATA 57.705 34.615 18.92 0.00 39.78 2.15
2262 9359 8.919145 AGCAAAGAGTAGCTAGTTACTTCATAT 58.081 33.333 18.92 3.80 39.78 1.78
2263 9360 8.973378 GCAAAGAGTAGCTAGTTACTTCATATG 58.027 37.037 18.92 14.27 34.13 1.78
2264 9361 8.973378 CAAAGAGTAGCTAGTTACTTCATATGC 58.027 37.037 18.92 6.09 34.13 3.14
2265 9362 7.825331 AGAGTAGCTAGTTACTTCATATGCA 57.175 36.000 18.92 0.00 34.13 3.96
2266 9363 8.239038 AGAGTAGCTAGTTACTTCATATGCAA 57.761 34.615 18.92 0.00 34.13 4.08
2267 9364 8.696374 AGAGTAGCTAGTTACTTCATATGCAAA 58.304 33.333 18.92 0.00 34.13 3.68
2268 9365 9.314321 GAGTAGCTAGTTACTTCATATGCAAAA 57.686 33.333 18.92 0.00 34.13 2.44
2269 9366 9.099454 AGTAGCTAGTTACTTCATATGCAAAAC 57.901 33.333 13.04 0.47 29.72 2.43
2270 9367 7.321745 AGCTAGTTACTTCATATGCAAAACC 57.678 36.000 0.00 0.00 0.00 3.27
2271 9368 6.884295 AGCTAGTTACTTCATATGCAAAACCA 59.116 34.615 0.00 0.00 0.00 3.67
2272 9369 7.557719 AGCTAGTTACTTCATATGCAAAACCAT 59.442 33.333 0.00 0.00 0.00 3.55
2273 9370 8.836413 GCTAGTTACTTCATATGCAAAACCATA 58.164 33.333 0.00 0.00 32.67 2.74
2288 9385 8.394877 TGCAAAACCATATAATTCAGAAGTACG 58.605 33.333 0.00 0.00 0.00 3.67
2289 9386 7.855904 GCAAAACCATATAATTCAGAAGTACGG 59.144 37.037 0.00 0.00 0.00 4.02
2290 9387 9.104965 CAAAACCATATAATTCAGAAGTACGGA 57.895 33.333 8.74 0.00 0.00 4.69
2291 9388 8.658499 AAACCATATAATTCAGAAGTACGGAC 57.342 34.615 8.74 0.00 0.00 4.79
2292 9389 6.756221 ACCATATAATTCAGAAGTACGGACC 58.244 40.000 0.00 0.00 0.00 4.46
2293 9390 6.553852 ACCATATAATTCAGAAGTACGGACCT 59.446 38.462 0.00 0.00 0.00 3.85
2294 9391 7.091443 CCATATAATTCAGAAGTACGGACCTC 58.909 42.308 0.00 0.00 0.00 3.85
2295 9392 3.505464 AATTCAGAAGTACGGACCTCG 57.495 47.619 0.00 0.00 45.88 4.63
2296 9393 1.171308 TTCAGAAGTACGGACCTCGG 58.829 55.000 0.00 0.00 44.45 4.63
2297 9394 0.037303 TCAGAAGTACGGACCTCGGT 59.963 55.000 0.00 0.00 44.45 4.69
2298 9395 0.450983 CAGAAGTACGGACCTCGGTC 59.549 60.000 7.57 7.57 44.45 4.79
2299 9396 0.037303 AGAAGTACGGACCTCGGTCA 59.963 55.000 17.21 0.00 46.20 4.02
2300 9397 0.883833 GAAGTACGGACCTCGGTCAA 59.116 55.000 17.21 0.29 46.20 3.18
2301 9398 1.270550 GAAGTACGGACCTCGGTCAAA 59.729 52.381 17.21 0.00 46.20 2.69
2302 9399 1.331214 AGTACGGACCTCGGTCAAAA 58.669 50.000 17.21 0.00 46.20 2.44
2303 9400 1.688197 AGTACGGACCTCGGTCAAAAA 59.312 47.619 17.21 0.00 46.20 1.94
2304 9401 2.064014 GTACGGACCTCGGTCAAAAAG 58.936 52.381 17.21 5.98 46.20 2.27
2305 9402 0.250166 ACGGACCTCGGTCAAAAAGG 60.250 55.000 17.21 2.64 46.20 3.11
2306 9403 0.034337 CGGACCTCGGTCAAAAAGGA 59.966 55.000 17.21 0.00 46.20 3.36
2307 9404 1.809684 GGACCTCGGTCAAAAAGGAG 58.190 55.000 17.21 0.00 46.20 3.69
2308 9405 1.346722 GGACCTCGGTCAAAAAGGAGA 59.653 52.381 17.21 0.00 46.20 3.71
2309 9406 2.613223 GGACCTCGGTCAAAAAGGAGAG 60.613 54.545 17.21 0.00 46.20 3.20
2310 9407 1.270893 ACCTCGGTCAAAAAGGAGAGC 60.271 52.381 0.00 0.00 34.16 4.09
2311 9408 1.443802 CTCGGTCAAAAAGGAGAGCC 58.556 55.000 0.00 0.00 0.00 4.70
2312 9409 0.762418 TCGGTCAAAAAGGAGAGCCA 59.238 50.000 0.00 0.00 36.29 4.75
2313 9410 0.875059 CGGTCAAAAAGGAGAGCCAC 59.125 55.000 0.00 0.00 36.29 5.01
2314 9411 1.543429 CGGTCAAAAAGGAGAGCCACT 60.543 52.381 0.00 0.00 36.29 4.00
2315 9412 2.587522 GGTCAAAAAGGAGAGCCACTT 58.412 47.619 0.00 0.00 36.29 3.16
2316 9413 2.959030 GGTCAAAAAGGAGAGCCACTTT 59.041 45.455 0.00 0.00 38.48 2.66
2317 9414 3.384789 GGTCAAAAAGGAGAGCCACTTTT 59.615 43.478 0.00 0.00 45.81 2.27
2318 9415 4.363138 GTCAAAAAGGAGAGCCACTTTTG 58.637 43.478 12.38 12.38 43.81 2.44
2319 9416 3.126073 CAAAAAGGAGAGCCACTTTTGC 58.874 45.455 0.00 0.00 43.81 3.68
2320 9417 0.954452 AAAGGAGAGCCACTTTTGCG 59.046 50.000 0.00 0.00 33.39 4.85
2321 9418 0.179018 AAGGAGAGCCACTTTTGCGT 60.179 50.000 0.00 0.00 36.29 5.24
2322 9419 0.179018 AGGAGAGCCACTTTTGCGTT 60.179 50.000 0.00 0.00 36.29 4.84
2323 9420 1.071699 AGGAGAGCCACTTTTGCGTTA 59.928 47.619 0.00 0.00 36.29 3.18
2324 9421 1.877443 GGAGAGCCACTTTTGCGTTAA 59.123 47.619 0.00 0.00 0.00 2.01
2325 9422 2.350484 GGAGAGCCACTTTTGCGTTAAC 60.350 50.000 0.00 0.00 0.00 2.01
2326 9423 2.289547 GAGAGCCACTTTTGCGTTAACA 59.710 45.455 6.39 0.00 0.00 2.41
2327 9424 2.685897 AGAGCCACTTTTGCGTTAACAA 59.314 40.909 6.39 0.00 0.00 2.83
2328 9425 3.042887 GAGCCACTTTTGCGTTAACAAG 58.957 45.455 6.39 4.27 0.00 3.16
2329 9426 2.425668 AGCCACTTTTGCGTTAACAAGT 59.574 40.909 6.39 4.91 0.00 3.16
2330 9427 3.628487 AGCCACTTTTGCGTTAACAAGTA 59.372 39.130 6.39 0.00 0.00 2.24
2331 9428 3.727227 GCCACTTTTGCGTTAACAAGTAC 59.273 43.478 6.39 0.80 0.00 2.73
2332 9429 4.731193 GCCACTTTTGCGTTAACAAGTACA 60.731 41.667 6.39 0.00 0.00 2.90
2333 9430 5.516090 CCACTTTTGCGTTAACAAGTACAT 58.484 37.500 6.39 0.00 0.00 2.29
2334 9431 5.398122 CCACTTTTGCGTTAACAAGTACATG 59.602 40.000 6.39 0.00 0.00 3.21
2335 9432 5.398122 CACTTTTGCGTTAACAAGTACATGG 59.602 40.000 6.39 0.00 0.00 3.66
2336 9433 4.491234 TTTGCGTTAACAAGTACATGGG 57.509 40.909 6.39 0.00 0.00 4.00
2337 9434 3.128852 TGCGTTAACAAGTACATGGGT 57.871 42.857 6.39 0.00 0.00 4.51
2338 9435 2.809119 TGCGTTAACAAGTACATGGGTG 59.191 45.455 6.39 0.00 0.00 4.61
2339 9436 3.068560 GCGTTAACAAGTACATGGGTGA 58.931 45.455 6.39 0.00 0.00 4.02
2340 9437 3.120442 GCGTTAACAAGTACATGGGTGAC 60.120 47.826 6.39 0.00 0.00 3.67
2341 9438 4.312443 CGTTAACAAGTACATGGGTGACT 58.688 43.478 6.39 0.00 0.00 3.41
2342 9439 5.472148 CGTTAACAAGTACATGGGTGACTA 58.528 41.667 6.39 0.00 0.00 2.59
2343 9440 5.927689 CGTTAACAAGTACATGGGTGACTAA 59.072 40.000 6.39 0.00 0.00 2.24
2344 9441 6.424509 CGTTAACAAGTACATGGGTGACTAAA 59.575 38.462 6.39 0.00 0.00 1.85
2345 9442 7.359765 CGTTAACAAGTACATGGGTGACTAAAG 60.360 40.741 6.39 0.00 0.00 1.85
2346 9443 5.818678 ACAAGTACATGGGTGACTAAAGA 57.181 39.130 2.78 0.00 0.00 2.52
2347 9444 5.548406 ACAAGTACATGGGTGACTAAAGAC 58.452 41.667 2.78 0.00 0.00 3.01
2348 9445 4.820894 AGTACATGGGTGACTAAAGACC 57.179 45.455 0.00 0.00 0.00 3.85
2358 9455 5.801380 GGTGACTAAAGACCCAACTATTCA 58.199 41.667 0.00 0.00 0.00 2.57
2359 9456 5.875359 GGTGACTAAAGACCCAACTATTCAG 59.125 44.000 0.00 0.00 0.00 3.02
2360 9457 6.465084 GTGACTAAAGACCCAACTATTCAGT 58.535 40.000 0.00 0.00 36.19 3.41
2361 9458 6.935208 GTGACTAAAGACCCAACTATTCAGTT 59.065 38.462 0.00 0.00 46.15 3.16
2362 9459 7.444487 GTGACTAAAGACCCAACTATTCAGTTT 59.556 37.037 0.00 0.00 42.51 2.66
2363 9460 7.660208 TGACTAAAGACCCAACTATTCAGTTTC 59.340 37.037 0.00 0.00 42.51 2.78
2364 9461 7.746703 ACTAAAGACCCAACTATTCAGTTTCT 58.253 34.615 0.00 0.00 42.51 2.52
2365 9462 6.884280 AAAGACCCAACTATTCAGTTTCTG 57.116 37.500 0.00 0.00 42.51 3.02
2366 9463 4.327680 AGACCCAACTATTCAGTTTCTGC 58.672 43.478 0.00 0.00 42.51 4.26
2367 9464 4.042187 AGACCCAACTATTCAGTTTCTGCT 59.958 41.667 0.00 0.00 42.51 4.24
2368 9465 4.729868 ACCCAACTATTCAGTTTCTGCTT 58.270 39.130 0.00 0.00 42.51 3.91
2369 9466 5.876357 ACCCAACTATTCAGTTTCTGCTTA 58.124 37.500 0.00 0.00 42.51 3.09
2370 9467 6.303839 ACCCAACTATTCAGTTTCTGCTTAA 58.696 36.000 0.00 0.00 42.51 1.85
2371 9468 6.431234 ACCCAACTATTCAGTTTCTGCTTAAG 59.569 38.462 0.00 0.00 42.51 1.85
2372 9469 6.655003 CCCAACTATTCAGTTTCTGCTTAAGA 59.345 38.462 6.67 0.00 42.51 2.10
2373 9470 7.174946 CCCAACTATTCAGTTTCTGCTTAAGAA 59.825 37.037 6.67 0.00 42.51 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 64 5.499139 TGCTTATACTAAAGTTGGCATGC 57.501 39.130 9.90 9.90 0.00 4.06
67 69 9.906660 TTTTCACAATGCTTATACTAAAGTTGG 57.093 29.630 0.00 0.00 0.00 3.77
78 80 9.979578 TTACACTGAAATTTTCACAATGCTTAT 57.020 25.926 7.74 0.00 35.46 1.73
91 93 9.369904 GTTGCCATGATATTTACACTGAAATTT 57.630 29.630 0.00 0.00 31.51 1.82
99 101 6.035975 GCCAAAAGTTGCCATGATATTTACAC 59.964 38.462 0.00 0.00 0.00 2.90
132 134 7.684670 TCATATTGCTATGTTTTGACGACTTC 58.315 34.615 0.00 0.00 36.80 3.01
134 136 7.041721 TCTCATATTGCTATGTTTTGACGACT 58.958 34.615 0.00 0.00 36.80 4.18
135 137 7.234187 TCTCATATTGCTATGTTTTGACGAC 57.766 36.000 0.00 0.00 36.80 4.34
136 138 7.928167 AGATCTCATATTGCTATGTTTTGACGA 59.072 33.333 0.00 0.00 36.80 4.20
137 139 8.081208 AGATCTCATATTGCTATGTTTTGACG 57.919 34.615 0.00 0.00 36.80 4.35
161 163 7.271936 GTCTCAACGAGATCTTCAAAACTAG 57.728 40.000 0.00 0.00 40.98 2.57
219 221 8.712228 AACTGTTTTCTCTCCCAAATAGAAAT 57.288 30.769 0.00 0.00 38.61 2.17
222 224 9.635404 TTAAAACTGTTTTCTCTCCCAAATAGA 57.365 29.630 20.72 0.00 34.19 1.98
223 225 9.899226 CTTAAAACTGTTTTCTCTCCCAAATAG 57.101 33.333 20.72 0.00 34.19 1.73
260 262 8.612619 ACGGATAACACTAGCAGAATATTTTTG 58.387 33.333 0.00 0.00 0.00 2.44
265 267 7.497595 TCAAACGGATAACACTAGCAGAATAT 58.502 34.615 0.00 0.00 0.00 1.28
266 268 6.869695 TCAAACGGATAACACTAGCAGAATA 58.130 36.000 0.00 0.00 0.00 1.75
268 270 5.142061 TCAAACGGATAACACTAGCAGAA 57.858 39.130 0.00 0.00 0.00 3.02
275 278 2.671396 GCGACATCAAACGGATAACACT 59.329 45.455 0.00 0.00 33.95 3.55
276 279 2.413796 TGCGACATCAAACGGATAACAC 59.586 45.455 0.00 0.00 33.95 3.32
285 288 3.613737 CCATCCATTTTGCGACATCAAAC 59.386 43.478 0.00 0.00 35.86 2.93
294 297 3.255642 CCCCTATTACCATCCATTTTGCG 59.744 47.826 0.00 0.00 0.00 4.85
307 310 1.065272 TGGTCCAAACGCCCCTATTAC 60.065 52.381 0.00 0.00 0.00 1.89
321 324 0.888736 CCACGAAGCAACATGGTCCA 60.889 55.000 0.00 0.00 0.00 4.02
339 342 3.213506 TGATAAGTGCCATACATGTGCC 58.786 45.455 9.11 0.00 0.00 5.01
340 343 5.443185 AATGATAAGTGCCATACATGTGC 57.557 39.130 9.11 3.92 0.00 4.57
346 349 5.852282 AACCCAAATGATAAGTGCCATAC 57.148 39.130 0.00 0.00 0.00 2.39
348 351 6.865834 TTAAACCCAAATGATAAGTGCCAT 57.134 33.333 0.00 0.00 0.00 4.40
349 352 6.865834 ATTAAACCCAAATGATAAGTGCCA 57.134 33.333 0.00 0.00 0.00 4.92
415 418 2.025887 ACTTATCTTTCCTGTGCTGGGG 60.026 50.000 0.00 0.00 0.00 4.96
418 421 3.679389 ACCACTTATCTTTCCTGTGCTG 58.321 45.455 0.00 0.00 0.00 4.41
425 428 5.697633 TCGTTACACAACCACTTATCTTTCC 59.302 40.000 0.00 0.00 0.00 3.13
445 448 5.694458 GTGCCAAATTTTAGGTTGATTCGTT 59.306 36.000 0.00 0.00 0.00 3.85
461 464 7.781693 ACTTCATCTATTATCTTGGTGCCAAAT 59.218 33.333 5.10 4.92 35.33 2.32
544 547 7.977818 ACCTAGATTGCTATCATGGAAATACA 58.022 34.615 19.85 0.00 32.88 2.29
592 595 8.654215 GGCTTAAGTGTAGTAGAAAACATGTAC 58.346 37.037 0.00 0.00 0.00 2.90
597 600 8.685838 ATTTGGCTTAAGTGTAGTAGAAAACA 57.314 30.769 4.02 0.00 0.00 2.83
791 2374 6.702716 TTTATAGGGGGCAAACTTTATTCG 57.297 37.500 0.00 0.00 0.00 3.34
822 2407 4.111916 AGCATTTACAATGGCATTTACGC 58.888 39.130 10.65 7.71 0.00 4.42
823 2408 6.972328 AGTAAGCATTTACAATGGCATTTACG 59.028 34.615 10.65 2.00 41.33 3.18
824 2409 8.594687 CAAGTAAGCATTTACAATGGCATTTAC 58.405 33.333 10.65 7.33 41.33 2.01
918 2504 1.434188 TGGTGTTGTGAGTGGATCCT 58.566 50.000 14.23 0.00 0.00 3.24
932 2522 2.316108 GGGACTTTGGTGAATTGGTGT 58.684 47.619 0.00 0.00 0.00 4.16
979 2570 6.840527 TCATGGCTATTGGATTGTCTAATGA 58.159 36.000 0.00 0.00 30.10 2.57
1082 2673 2.305928 TCCATAATTGGTTGCCCATCG 58.694 47.619 0.00 0.00 44.06 3.84
1089 8173 2.230025 TGCCGTGTTCCATAATTGGTTG 59.770 45.455 0.00 0.00 44.06 3.77
1098 8182 3.627395 TTCTCTATTGCCGTGTTCCAT 57.373 42.857 0.00 0.00 0.00 3.41
1107 8191 3.795688 TCCCATCCATTCTCTATTGCC 57.204 47.619 0.00 0.00 0.00 4.52
1173 8257 1.966451 GAACTCCAACACCGCCCAG 60.966 63.158 0.00 0.00 0.00 4.45
1193 8277 1.813753 ACGCAGTTCACGTGCTTGT 60.814 52.632 11.67 1.56 37.78 3.16
1285 8369 0.327924 TTCCCGCCAATGTCTGATGT 59.672 50.000 0.00 0.00 0.00 3.06
1356 8440 2.701780 GGCGAACGAGAGGAGCTGA 61.702 63.158 0.00 0.00 0.00 4.26
1368 8452 1.132453 GCCTATTTCACCTTGGCGAAC 59.868 52.381 0.00 0.00 33.96 3.95
1405 8489 8.785329 TCTGCAACATCACAATTATTACTACA 57.215 30.769 0.00 0.00 0.00 2.74
1516 8608 3.866651 TCTGCTCTTATCCTTGTCAAGC 58.133 45.455 7.09 0.00 0.00 4.01
1525 8617 6.151817 AGTTGTTCCATTTTCTGCTCTTATCC 59.848 38.462 0.00 0.00 0.00 2.59
1604 8697 6.627395 ACCGTGTTTTTATTTCATGACTCA 57.373 33.333 0.00 0.00 0.00 3.41
1707 8801 4.670896 TCATTTCCATGTCAGCGAGATA 57.329 40.909 0.00 0.00 0.00 1.98
1781 8878 5.307196 TGGAGATTGAAGGTATAGTTAGGCC 59.693 44.000 0.00 0.00 0.00 5.19
1788 8885 4.747108 CGTGCTTGGAGATTGAAGGTATAG 59.253 45.833 0.00 0.00 0.00 1.31
1796 8893 2.621338 GTGATCGTGCTTGGAGATTGA 58.379 47.619 0.00 0.00 0.00 2.57
1807 8904 1.399440 TCACTAGTACCGTGATCGTGC 59.601 52.381 10.57 0.00 36.54 5.34
1811 8908 5.231568 CCGAAATTTCACTAGTACCGTGATC 59.768 44.000 17.99 9.19 40.70 2.92
1812 8909 5.105635 TCCGAAATTTCACTAGTACCGTGAT 60.106 40.000 17.99 2.50 40.70 3.06
1823 8920 4.286297 TCATCACCTCCGAAATTTCACT 57.714 40.909 17.99 0.00 0.00 3.41
1857 8954 3.395639 TCCTTTGTCACCGTCACATTAC 58.604 45.455 0.00 0.00 0.00 1.89
1887 8984 5.941647 GCCTAAACACTAATTGGTAACCTCA 59.058 40.000 0.00 0.00 0.00 3.86
1982 9079 2.035632 GGCTAGTGACTACTGCCATCT 58.964 52.381 15.60 0.00 44.02 2.90
1999 9096 3.638627 CCAAACCTTTCTTTCTTGAGGCT 59.361 43.478 0.00 0.00 32.42 4.58
2046 9143 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2047 9144 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2048 9145 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2049 9146 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2050 9147 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2051 9148 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2052 9149 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2053 9150 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2054 9151 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
2055 9152 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
2056 9153 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
2057 9154 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
2058 9155 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
2059 9156 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
2060 9157 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
2061 9158 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
2062 9159 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
2063 9160 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
2064 9161 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
2065 9162 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
2066 9163 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
2067 9164 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
2068 9165 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
2069 9166 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
2070 9167 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
2071 9168 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
2072 9169 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
2073 9170 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
2074 9171 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
2075 9172 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
2076 9173 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
2077 9174 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
2078 9175 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
2089 9186 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
2090 9187 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
2091 9188 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
2092 9189 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
2093 9190 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
2094 9191 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
2095 9192 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
2096 9193 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
2097 9194 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
2098 9195 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
2099 9196 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
2100 9197 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
2101 9198 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
2102 9199 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
2103 9200 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
2104 9201 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
2105 9202 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
2106 9203 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
2107 9204 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
2108 9205 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
2109 9206 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
2110 9207 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
2111 9208 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
2112 9209 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
2113 9210 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
2114 9211 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
2115 9212 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
2116 9213 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
2117 9214 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
2118 9215 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
2119 9216 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
2120 9217 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
2121 9218 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
2122 9219 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
2123 9220 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
2124 9221 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
2125 9222 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
2126 9223 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
2127 9224 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
2128 9225 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
2137 9234 1.022735 GAGCCATGAGCCATGAGTTG 58.977 55.000 14.52 2.17 43.81 3.16
2138 9235 0.917533 AGAGCCATGAGCCATGAGTT 59.082 50.000 14.52 5.25 43.81 3.01
2139 9236 1.693062 CTAGAGCCATGAGCCATGAGT 59.307 52.381 14.52 3.73 43.81 3.41
2140 9237 1.969208 TCTAGAGCCATGAGCCATGAG 59.031 52.381 14.52 7.60 43.81 2.90
2141 9238 1.969208 CTCTAGAGCCATGAGCCATGA 59.031 52.381 6.86 0.00 43.81 3.07
2142 9239 1.002201 CCTCTAGAGCCATGAGCCATG 59.998 57.143 14.73 7.88 45.47 3.66
2143 9240 1.132913 TCCTCTAGAGCCATGAGCCAT 60.133 52.381 14.73 0.00 45.47 4.40
2144 9241 0.262876 TCCTCTAGAGCCATGAGCCA 59.737 55.000 14.73 0.00 45.47 4.75
2145 9242 0.968405 CTCCTCTAGAGCCATGAGCC 59.032 60.000 14.73 0.00 45.47 4.70
2146 9243 1.993956 TCTCCTCTAGAGCCATGAGC 58.006 55.000 14.73 0.00 42.90 4.26
2147 9244 5.350504 TTTTTCTCCTCTAGAGCCATGAG 57.649 43.478 14.73 14.51 42.90 2.90
2148 9245 5.965033 ATTTTTCTCCTCTAGAGCCATGA 57.035 39.130 14.73 5.32 42.90 3.07
2149 9246 6.586344 TGTATTTTTCTCCTCTAGAGCCATG 58.414 40.000 14.73 0.68 42.90 3.66
2150 9247 6.814954 TGTATTTTTCTCCTCTAGAGCCAT 57.185 37.500 14.73 0.95 42.90 4.40
2151 9248 6.814954 ATGTATTTTTCTCCTCTAGAGCCA 57.185 37.500 14.73 1.90 42.90 4.75
2152 9249 8.371699 ACATATGTATTTTTCTCCTCTAGAGCC 58.628 37.037 14.73 0.00 42.90 4.70
2153 9250 9.202273 CACATATGTATTTTTCTCCTCTAGAGC 57.798 37.037 14.73 0.00 42.90 4.09
2154 9251 9.202273 GCACATATGTATTTTTCTCCTCTAGAG 57.798 37.037 13.18 13.18 44.75 2.43
2155 9252 8.704668 TGCACATATGTATTTTTCTCCTCTAGA 58.295 33.333 8.32 0.00 0.00 2.43
2156 9253 8.893219 TGCACATATGTATTTTTCTCCTCTAG 57.107 34.615 8.32 0.00 0.00 2.43
2157 9254 9.851686 AATGCACATATGTATTTTTCTCCTCTA 57.148 29.630 8.32 0.00 37.85 2.43
2158 9255 8.757982 AATGCACATATGTATTTTTCTCCTCT 57.242 30.769 8.32 0.00 37.85 3.69
2174 9271 9.237187 TCCACAGTCTAATTTTTAATGCACATA 57.763 29.630 0.00 0.00 0.00 2.29
2175 9272 8.121305 TCCACAGTCTAATTTTTAATGCACAT 57.879 30.769 0.00 0.00 0.00 3.21
2176 9273 7.517614 TCCACAGTCTAATTTTTAATGCACA 57.482 32.000 0.00 0.00 0.00 4.57
2177 9274 8.462016 AGATCCACAGTCTAATTTTTAATGCAC 58.538 33.333 0.00 0.00 0.00 4.57
2178 9275 8.579850 AGATCCACAGTCTAATTTTTAATGCA 57.420 30.769 0.00 0.00 0.00 3.96
2184 9281 9.667107 TCGATTAAGATCCACAGTCTAATTTTT 57.333 29.630 0.00 0.00 0.00 1.94
2185 9282 9.099454 GTCGATTAAGATCCACAGTCTAATTTT 57.901 33.333 0.00 0.00 0.00 1.82
2186 9283 7.711339 GGTCGATTAAGATCCACAGTCTAATTT 59.289 37.037 0.00 0.00 0.00 1.82
2187 9284 7.147724 TGGTCGATTAAGATCCACAGTCTAATT 60.148 37.037 0.00 0.00 0.00 1.40
2188 9285 6.323996 TGGTCGATTAAGATCCACAGTCTAAT 59.676 38.462 0.00 0.00 0.00 1.73
2189 9286 5.655090 TGGTCGATTAAGATCCACAGTCTAA 59.345 40.000 0.00 0.00 0.00 2.10
2190 9287 5.198207 TGGTCGATTAAGATCCACAGTCTA 58.802 41.667 0.00 0.00 0.00 2.59
2191 9288 4.023980 TGGTCGATTAAGATCCACAGTCT 58.976 43.478 0.00 0.00 0.00 3.24
2192 9289 4.386867 TGGTCGATTAAGATCCACAGTC 57.613 45.455 0.00 0.00 0.00 3.51
2193 9290 4.697514 CATGGTCGATTAAGATCCACAGT 58.302 43.478 0.00 0.00 0.00 3.55
2194 9291 3.496130 GCATGGTCGATTAAGATCCACAG 59.504 47.826 0.00 0.00 0.00 3.66
2195 9292 3.134623 AGCATGGTCGATTAAGATCCACA 59.865 43.478 0.00 0.00 0.00 4.17
2196 9293 3.733337 AGCATGGTCGATTAAGATCCAC 58.267 45.455 0.00 0.00 0.00 4.02
2197 9294 5.745312 ATAGCATGGTCGATTAAGATCCA 57.255 39.130 0.00 0.00 0.00 3.41
2198 9295 9.817809 TTATAATAGCATGGTCGATTAAGATCC 57.182 33.333 0.00 0.00 0.00 3.36
2205 9302 9.520515 AGGAAATTTATAATAGCATGGTCGATT 57.479 29.630 0.00 0.00 0.00 3.34
2207 9304 9.653287 CTAGGAAATTTATAATAGCATGGTCGA 57.347 33.333 0.00 0.00 0.00 4.20
2208 9305 8.391106 GCTAGGAAATTTATAATAGCATGGTCG 58.609 37.037 0.00 0.00 36.50 4.79
2209 9306 8.391106 CGCTAGGAAATTTATAATAGCATGGTC 58.609 37.037 0.00 0.00 36.32 4.02
2210 9307 8.100791 TCGCTAGGAAATTTATAATAGCATGGT 58.899 33.333 16.92 1.62 36.32 3.55
2211 9308 8.492673 TCGCTAGGAAATTTATAATAGCATGG 57.507 34.615 16.92 7.05 36.32 3.66
2212 9309 8.119226 GCTCGCTAGGAAATTTATAATAGCATG 58.881 37.037 16.92 11.98 36.32 4.06
2213 9310 7.824289 TGCTCGCTAGGAAATTTATAATAGCAT 59.176 33.333 16.92 0.00 36.32 3.79
2214 9311 7.158697 TGCTCGCTAGGAAATTTATAATAGCA 58.841 34.615 16.92 12.01 36.32 3.49
2215 9312 7.596749 TGCTCGCTAGGAAATTTATAATAGC 57.403 36.000 10.91 10.91 33.86 2.97
2217 9314 9.772973 TCTTTGCTCGCTAGGAAATTTATAATA 57.227 29.630 5.39 0.00 41.53 0.98
2218 9315 8.677148 TCTTTGCTCGCTAGGAAATTTATAAT 57.323 30.769 5.39 0.00 41.53 1.28
2219 9316 7.769044 ACTCTTTGCTCGCTAGGAAATTTATAA 59.231 33.333 5.39 0.00 41.53 0.98
2220 9317 7.272978 ACTCTTTGCTCGCTAGGAAATTTATA 58.727 34.615 5.39 0.00 41.53 0.98
2221 9318 6.116126 ACTCTTTGCTCGCTAGGAAATTTAT 58.884 36.000 5.39 0.00 41.53 1.40
2222 9319 5.488341 ACTCTTTGCTCGCTAGGAAATTTA 58.512 37.500 5.39 0.00 41.53 1.40
2223 9320 4.327680 ACTCTTTGCTCGCTAGGAAATTT 58.672 39.130 5.39 0.00 41.53 1.82
2224 9321 3.944087 ACTCTTTGCTCGCTAGGAAATT 58.056 40.909 5.39 0.00 41.53 1.82
2225 9322 3.618690 ACTCTTTGCTCGCTAGGAAAT 57.381 42.857 5.39 0.00 41.53 2.17
2226 9323 3.676324 GCTACTCTTTGCTCGCTAGGAAA 60.676 47.826 4.87 4.87 40.33 3.13
2227 9324 2.159226 GCTACTCTTTGCTCGCTAGGAA 60.159 50.000 0.00 0.00 0.00 3.36
2228 9325 1.405821 GCTACTCTTTGCTCGCTAGGA 59.594 52.381 0.00 0.00 0.00 2.94
2229 9326 1.407258 AGCTACTCTTTGCTCGCTAGG 59.593 52.381 0.00 0.00 33.90 3.02
2230 9327 2.861462 AGCTACTCTTTGCTCGCTAG 57.139 50.000 0.00 0.00 33.90 3.42
2231 9328 3.280295 ACTAGCTACTCTTTGCTCGCTA 58.720 45.455 0.00 0.00 40.35 4.26
2232 9329 2.096248 ACTAGCTACTCTTTGCTCGCT 58.904 47.619 0.00 0.00 40.35 4.93
2233 9330 2.570442 ACTAGCTACTCTTTGCTCGC 57.430 50.000 0.00 0.00 40.35 5.03
2234 9331 5.238006 AGTAACTAGCTACTCTTTGCTCG 57.762 43.478 0.00 0.00 40.35 5.03
2235 9332 6.622549 TGAAGTAACTAGCTACTCTTTGCTC 58.377 40.000 6.29 0.84 40.35 4.26
2236 9333 6.591750 TGAAGTAACTAGCTACTCTTTGCT 57.408 37.500 6.29 0.00 42.67 3.91
2237 9334 8.973378 CATATGAAGTAACTAGCTACTCTTTGC 58.027 37.037 6.29 0.00 30.67 3.68
2238 9335 8.973378 GCATATGAAGTAACTAGCTACTCTTTG 58.027 37.037 6.97 2.94 30.67 2.77
2239 9336 8.696374 TGCATATGAAGTAACTAGCTACTCTTT 58.304 33.333 6.97 0.00 30.67 2.52
2240 9337 8.239038 TGCATATGAAGTAACTAGCTACTCTT 57.761 34.615 6.97 0.00 30.67 2.85
2241 9338 7.825331 TGCATATGAAGTAACTAGCTACTCT 57.175 36.000 6.97 0.00 30.67 3.24
2242 9339 8.873215 TTTGCATATGAAGTAACTAGCTACTC 57.127 34.615 6.97 2.08 30.67 2.59
2243 9340 9.099454 GTTTTGCATATGAAGTAACTAGCTACT 57.901 33.333 6.97 0.00 33.41 2.57
2244 9341 8.336080 GGTTTTGCATATGAAGTAACTAGCTAC 58.664 37.037 6.97 0.00 0.00 3.58
2245 9342 8.044309 TGGTTTTGCATATGAAGTAACTAGCTA 58.956 33.333 6.97 0.00 0.00 3.32
2246 9343 6.884295 TGGTTTTGCATATGAAGTAACTAGCT 59.116 34.615 6.97 0.00 0.00 3.32
2247 9344 7.083875 TGGTTTTGCATATGAAGTAACTAGC 57.916 36.000 6.97 0.00 0.00 3.42
2262 9359 8.394877 CGTACTTCTGAATTATATGGTTTTGCA 58.605 33.333 0.00 0.00 0.00 4.08
2263 9360 7.855904 CCGTACTTCTGAATTATATGGTTTTGC 59.144 37.037 0.00 0.00 0.00 3.68
2264 9361 9.104965 TCCGTACTTCTGAATTATATGGTTTTG 57.895 33.333 11.47 0.00 0.00 2.44
2265 9362 9.106070 GTCCGTACTTCTGAATTATATGGTTTT 57.894 33.333 11.47 0.00 0.00 2.43
2266 9363 7.713942 GGTCCGTACTTCTGAATTATATGGTTT 59.286 37.037 11.47 0.00 0.00 3.27
2267 9364 7.070821 AGGTCCGTACTTCTGAATTATATGGTT 59.929 37.037 11.47 0.00 0.00 3.67
2268 9365 6.553852 AGGTCCGTACTTCTGAATTATATGGT 59.446 38.462 11.47 0.26 0.00 3.55
2269 9366 6.994221 AGGTCCGTACTTCTGAATTATATGG 58.006 40.000 0.00 0.21 0.00 2.74
2270 9367 6.802348 CGAGGTCCGTACTTCTGAATTATATG 59.198 42.308 0.00 0.00 29.74 1.78
2271 9368 6.072064 CCGAGGTCCGTACTTCTGAATTATAT 60.072 42.308 0.00 0.00 36.31 0.86
2272 9369 5.240183 CCGAGGTCCGTACTTCTGAATTATA 59.760 44.000 0.00 0.00 36.31 0.98
2273 9370 4.037684 CCGAGGTCCGTACTTCTGAATTAT 59.962 45.833 0.00 0.00 36.31 1.28
2274 9371 3.379372 CCGAGGTCCGTACTTCTGAATTA 59.621 47.826 0.00 0.00 36.31 1.40
2275 9372 2.165845 CCGAGGTCCGTACTTCTGAATT 59.834 50.000 0.00 0.00 36.31 2.17
2276 9373 1.749634 CCGAGGTCCGTACTTCTGAAT 59.250 52.381 0.00 0.00 36.31 2.57
2277 9374 1.171308 CCGAGGTCCGTACTTCTGAA 58.829 55.000 0.00 0.00 36.31 3.02
2278 9375 0.037303 ACCGAGGTCCGTACTTCTGA 59.963 55.000 0.00 0.00 36.31 3.27
2279 9376 0.450983 GACCGAGGTCCGTACTTCTG 59.549 60.000 11.07 0.00 39.08 3.02
2280 9377 0.037303 TGACCGAGGTCCGTACTTCT 59.963 55.000 18.57 0.00 43.97 2.85
2281 9378 0.883833 TTGACCGAGGTCCGTACTTC 59.116 55.000 18.57 0.00 43.97 3.01
2282 9379 1.331214 TTTGACCGAGGTCCGTACTT 58.669 50.000 18.57 0.00 43.97 2.24
2283 9380 1.331214 TTTTGACCGAGGTCCGTACT 58.669 50.000 18.57 0.00 43.97 2.73
2284 9381 2.064014 CTTTTTGACCGAGGTCCGTAC 58.936 52.381 18.57 0.00 43.97 3.67
2285 9382 1.001181 CCTTTTTGACCGAGGTCCGTA 59.999 52.381 18.57 2.73 43.97 4.02
2286 9383 0.250166 CCTTTTTGACCGAGGTCCGT 60.250 55.000 18.57 0.00 43.97 4.69
2287 9384 0.034337 TCCTTTTTGACCGAGGTCCG 59.966 55.000 18.57 3.44 43.97 4.79
2288 9385 1.346722 TCTCCTTTTTGACCGAGGTCC 59.653 52.381 18.57 2.78 43.97 4.46
2289 9386 2.689646 CTCTCCTTTTTGACCGAGGTC 58.310 52.381 14.98 14.98 44.77 3.85
2290 9387 1.270893 GCTCTCCTTTTTGACCGAGGT 60.271 52.381 0.00 0.00 32.33 3.85
2291 9388 1.443802 GCTCTCCTTTTTGACCGAGG 58.556 55.000 0.00 0.00 0.00 4.63
2292 9389 1.270839 TGGCTCTCCTTTTTGACCGAG 60.271 52.381 0.00 0.00 0.00 4.63
2293 9390 0.762418 TGGCTCTCCTTTTTGACCGA 59.238 50.000 0.00 0.00 0.00 4.69
2294 9391 0.875059 GTGGCTCTCCTTTTTGACCG 59.125 55.000 0.00 0.00 0.00 4.79
2295 9392 2.278332 AGTGGCTCTCCTTTTTGACC 57.722 50.000 0.00 0.00 0.00 4.02
2296 9393 4.363138 CAAAAGTGGCTCTCCTTTTTGAC 58.637 43.478 13.92 0.00 42.93 3.18
2297 9394 3.181476 GCAAAAGTGGCTCTCCTTTTTGA 60.181 43.478 19.05 0.00 42.93 2.69
2298 9395 3.126073 GCAAAAGTGGCTCTCCTTTTTG 58.874 45.455 14.40 14.40 43.03 2.44
2299 9396 2.223805 CGCAAAAGTGGCTCTCCTTTTT 60.224 45.455 0.00 0.00 38.48 1.94
2300 9397 1.338020 CGCAAAAGTGGCTCTCCTTTT 59.662 47.619 0.00 0.00 40.53 2.27
2301 9398 0.954452 CGCAAAAGTGGCTCTCCTTT 59.046 50.000 0.00 0.00 32.44 3.11
2302 9399 0.179018 ACGCAAAAGTGGCTCTCCTT 60.179 50.000 0.00 0.00 0.00 3.36
2303 9400 0.179018 AACGCAAAAGTGGCTCTCCT 60.179 50.000 0.00 0.00 0.00 3.69
2304 9401 1.519408 TAACGCAAAAGTGGCTCTCC 58.481 50.000 0.00 0.00 0.00 3.71
2305 9402 2.289547 TGTTAACGCAAAAGTGGCTCTC 59.710 45.455 0.26 0.00 0.00 3.20
2306 9403 2.294074 TGTTAACGCAAAAGTGGCTCT 58.706 42.857 0.26 0.00 0.00 4.09
2307 9404 2.766970 TGTTAACGCAAAAGTGGCTC 57.233 45.000 0.26 0.00 0.00 4.70
2308 9405 2.425668 ACTTGTTAACGCAAAAGTGGCT 59.574 40.909 7.94 0.00 31.82 4.75
2309 9406 2.804647 ACTTGTTAACGCAAAAGTGGC 58.195 42.857 7.94 0.00 31.82 5.01
2310 9407 4.911053 TGTACTTGTTAACGCAAAAGTGG 58.089 39.130 15.63 0.00 34.76 4.00
2311 9408 5.398122 CCATGTACTTGTTAACGCAAAAGTG 59.602 40.000 15.63 4.89 34.76 3.16
2312 9409 5.506649 CCCATGTACTTGTTAACGCAAAAGT 60.507 40.000 12.18 12.18 36.80 2.66
2313 9410 4.915085 CCCATGTACTTGTTAACGCAAAAG 59.085 41.667 7.86 1.69 0.00 2.27
2314 9411 4.338682 ACCCATGTACTTGTTAACGCAAAA 59.661 37.500 7.86 0.00 0.00 2.44
2315 9412 3.884091 ACCCATGTACTTGTTAACGCAAA 59.116 39.130 7.86 0.00 0.00 3.68
2316 9413 3.251245 CACCCATGTACTTGTTAACGCAA 59.749 43.478 7.86 0.00 0.00 4.85
2317 9414 2.809119 CACCCATGTACTTGTTAACGCA 59.191 45.455 7.86 0.00 0.00 5.24
2318 9415 3.068560 TCACCCATGTACTTGTTAACGC 58.931 45.455 7.86 0.00 0.00 4.84
2319 9416 4.312443 AGTCACCCATGTACTTGTTAACG 58.688 43.478 7.86 0.00 0.00 3.18
2320 9417 7.658575 TCTTTAGTCACCCATGTACTTGTTAAC 59.341 37.037 7.86 0.00 0.00 2.01
2321 9418 7.658575 GTCTTTAGTCACCCATGTACTTGTTAA 59.341 37.037 7.86 0.00 0.00 2.01
2322 9419 7.156673 GTCTTTAGTCACCCATGTACTTGTTA 58.843 38.462 7.86 0.00 0.00 2.41
2323 9420 5.995897 GTCTTTAGTCACCCATGTACTTGTT 59.004 40.000 7.86 0.00 0.00 2.83
2324 9421 5.512576 GGTCTTTAGTCACCCATGTACTTGT 60.513 44.000 7.86 0.00 0.00 3.16
2325 9422 4.935808 GGTCTTTAGTCACCCATGTACTTG 59.064 45.833 1.78 1.78 0.00 3.16
2326 9423 5.161943 GGTCTTTAGTCACCCATGTACTT 57.838 43.478 0.00 0.00 0.00 2.24
2327 9424 4.820894 GGTCTTTAGTCACCCATGTACT 57.179 45.455 0.00 0.00 0.00 2.73
2335 9432 5.801380 TGAATAGTTGGGTCTTTAGTCACC 58.199 41.667 0.00 0.00 0.00 4.02
2336 9433 6.465084 ACTGAATAGTTGGGTCTTTAGTCAC 58.535 40.000 0.00 0.00 31.66 3.67
2337 9434 6.681729 ACTGAATAGTTGGGTCTTTAGTCA 57.318 37.500 0.00 0.00 31.66 3.41
2338 9435 7.878644 AGAAACTGAATAGTTGGGTCTTTAGTC 59.121 37.037 0.00 0.00 46.14 2.59
2339 9436 7.661847 CAGAAACTGAATAGTTGGGTCTTTAGT 59.338 37.037 0.00 0.00 46.14 2.24
2340 9437 7.361286 GCAGAAACTGAATAGTTGGGTCTTTAG 60.361 40.741 2.81 0.00 46.14 1.85
2341 9438 6.430000 GCAGAAACTGAATAGTTGGGTCTTTA 59.570 38.462 2.81 0.00 46.14 1.85
2342 9439 5.241728 GCAGAAACTGAATAGTTGGGTCTTT 59.758 40.000 2.81 0.00 46.14 2.52
2343 9440 4.762251 GCAGAAACTGAATAGTTGGGTCTT 59.238 41.667 2.81 0.00 46.14 3.01
2344 9441 4.042187 AGCAGAAACTGAATAGTTGGGTCT 59.958 41.667 2.81 0.00 46.14 3.85
2345 9442 4.327680 AGCAGAAACTGAATAGTTGGGTC 58.672 43.478 2.81 0.00 46.14 4.46
2346 9443 4.373156 AGCAGAAACTGAATAGTTGGGT 57.627 40.909 2.81 0.00 46.14 4.51
2347 9444 6.655003 TCTTAAGCAGAAACTGAATAGTTGGG 59.345 38.462 0.00 0.00 46.14 4.12
2348 9445 7.672983 TCTTAAGCAGAAACTGAATAGTTGG 57.327 36.000 0.00 0.00 46.14 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.