Multiple sequence alignment - TraesCS3B01G077200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G077200 chr3B 100.000 2901 0 0 1 2901 47477664 47474764 0.000000e+00 5358.0
1 TraesCS3B01G077200 chr3B 89.851 1005 69 13 975 1963 49152399 49153386 0.000000e+00 1260.0
2 TraesCS3B01G077200 chr3B 88.283 862 67 11 1073 1905 47742100 47741244 0.000000e+00 1002.0
3 TraesCS3B01G077200 chr3B 87.587 862 73 11 1073 1905 48079296 48078440 0.000000e+00 968.0
4 TraesCS3B01G077200 chr3B 79.302 430 63 14 1889 2294 47734967 47734540 7.920000e-71 278.0
5 TraesCS3B01G077200 chr3B 79.439 428 61 15 1892 2294 48071959 48071534 7.920000e-71 278.0
6 TraesCS3B01G077200 chr3B 79.157 427 63 14 1892 2294 47802515 47802091 3.680000e-69 272.0
7 TraesCS3B01G077200 chr3B 78.972 428 63 15 1892 2294 47856097 47855672 1.710000e-67 267.0
8 TraesCS3B01G077200 chr3B 78.972 428 63 15 1892 2294 48134413 48133988 1.710000e-67 267.0
9 TraesCS3B01G077200 chr3B 92.258 155 10 2 2745 2898 566637674 566637827 4.870000e-53 219.0
10 TraesCS3B01G077200 chr3B 80.632 253 25 14 2315 2548 49154537 49154784 1.070000e-39 174.0
11 TraesCS3B01G077200 chr3A 88.691 1291 111 15 1010 2294 38281314 38280053 0.000000e+00 1543.0
12 TraesCS3B01G077200 chr3A 89.898 980 87 7 974 1949 38300848 38301819 0.000000e+00 1251.0
13 TraesCS3B01G077200 chr3A 84.973 366 36 9 1936 2291 38302290 38302646 1.280000e-93 353.0
14 TraesCS3B01G077200 chr5B 94.877 976 47 3 1 974 250572713 250571739 0.000000e+00 1522.0
15 TraesCS3B01G077200 chr5B 92.000 150 10 2 2752 2900 387367961 387368109 2.930000e-50 209.0
16 TraesCS3B01G077200 chr6D 94.775 976 45 6 1 974 388202171 388201200 0.000000e+00 1515.0
17 TraesCS3B01G077200 chr6D 89.091 55 6 0 2008 2062 29979858 29979804 5.190000e-08 69.4
18 TraesCS3B01G077200 chr7D 94.672 976 48 3 1 974 311216496 311215523 0.000000e+00 1511.0
19 TraesCS3B01G077200 chr7D 94.495 981 52 2 1 980 598209067 598208088 0.000000e+00 1511.0
20 TraesCS3B01G077200 chr7D 88.506 348 37 2 2556 2900 608477712 608478059 4.470000e-113 418.0
21 TraesCS3B01G077200 chr2D 94.678 977 47 4 1 974 295041563 295042537 0.000000e+00 1511.0
22 TraesCS3B01G077200 chr2B 94.575 977 52 1 1 977 753559177 753558202 0.000000e+00 1509.0
23 TraesCS3B01G077200 chr2B 92.500 40 0 3 2133 2170 646452982 646453020 1.000000e-03 54.7
24 TraesCS3B01G077200 chr1D 94.661 974 51 1 1 974 413379272 413380244 0.000000e+00 1509.0
25 TraesCS3B01G077200 chr4B 94.581 978 48 5 1 976 283205332 283206306 0.000000e+00 1507.0
26 TraesCS3B01G077200 chr4B 87.187 359 31 4 2556 2900 95446209 95445852 7.530000e-106 394.0
27 TraesCS3B01G077200 chr3D 94.570 976 49 4 1 975 46492263 46491291 0.000000e+00 1506.0
28 TraesCS3B01G077200 chr3D 89.021 1011 85 16 975 1968 28547541 28546540 0.000000e+00 1229.0
29 TraesCS3B01G077200 chr3D 89.574 940 75 7 975 1902 28944793 28945721 0.000000e+00 1171.0
30 TraesCS3B01G077200 chr3D 90.051 784 64 7 975 1751 28591876 28591100 0.000000e+00 1003.0
31 TraesCS3B01G077200 chr3D 82.988 482 62 14 2044 2513 28584887 28584414 4.470000e-113 418.0
32 TraesCS3B01G077200 chr3D 89.157 249 16 4 2301 2547 28519030 28518791 1.690000e-77 300.0
33 TraesCS3B01G077200 chr3D 81.702 235 29 4 2074 2294 28520625 28520391 1.780000e-42 183.0
34 TraesCS3B01G077200 chr6B 89.820 776 65 4 977 1751 131694192 131694954 0.000000e+00 983.0
35 TraesCS3B01G077200 chr6B 90.034 291 14 5 2262 2547 131716885 131717165 2.120000e-96 363.0
36 TraesCS3B01G077200 chr6B 83.287 359 28 10 2556 2900 172243064 172243404 4.700000e-78 302.0
37 TraesCS3B01G077200 chr7B 87.465 359 30 4 2556 2900 246511533 246511176 1.620000e-107 399.0
38 TraesCS3B01G077200 chr1A 90.179 224 21 1 2676 2898 319448605 319448828 1.020000e-74 291.0
39 TraesCS3B01G077200 chr6A 86.441 59 8 0 2008 2066 32787838 32787896 6.710000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G077200 chr3B 47474764 47477664 2900 True 5358.0 5358 100.0000 1 2901 1 chr3B.!!$R1 2900
1 TraesCS3B01G077200 chr3B 47741244 47742100 856 True 1002.0 1002 88.2830 1073 1905 1 chr3B.!!$R3 832
2 TraesCS3B01G077200 chr3B 48078440 48079296 856 True 968.0 968 87.5870 1073 1905 1 chr3B.!!$R7 832
3 TraesCS3B01G077200 chr3B 49152399 49154784 2385 False 717.0 1260 85.2415 975 2548 2 chr3B.!!$F2 1573
4 TraesCS3B01G077200 chr3A 38280053 38281314 1261 True 1543.0 1543 88.6910 1010 2294 1 chr3A.!!$R1 1284
5 TraesCS3B01G077200 chr3A 38300848 38302646 1798 False 802.0 1251 87.4355 974 2291 2 chr3A.!!$F1 1317
6 TraesCS3B01G077200 chr5B 250571739 250572713 974 True 1522.0 1522 94.8770 1 974 1 chr5B.!!$R1 973
7 TraesCS3B01G077200 chr6D 388201200 388202171 971 True 1515.0 1515 94.7750 1 974 1 chr6D.!!$R2 973
8 TraesCS3B01G077200 chr7D 311215523 311216496 973 True 1511.0 1511 94.6720 1 974 1 chr7D.!!$R1 973
9 TraesCS3B01G077200 chr7D 598208088 598209067 979 True 1511.0 1511 94.4950 1 980 1 chr7D.!!$R2 979
10 TraesCS3B01G077200 chr2D 295041563 295042537 974 False 1511.0 1511 94.6780 1 974 1 chr2D.!!$F1 973
11 TraesCS3B01G077200 chr2B 753558202 753559177 975 True 1509.0 1509 94.5750 1 977 1 chr2B.!!$R1 976
12 TraesCS3B01G077200 chr1D 413379272 413380244 972 False 1509.0 1509 94.6610 1 974 1 chr1D.!!$F1 973
13 TraesCS3B01G077200 chr4B 283205332 283206306 974 False 1507.0 1507 94.5810 1 976 1 chr4B.!!$F1 975
14 TraesCS3B01G077200 chr3D 46491291 46492263 972 True 1506.0 1506 94.5700 1 975 1 chr3D.!!$R4 974
15 TraesCS3B01G077200 chr3D 28546540 28547541 1001 True 1229.0 1229 89.0210 975 1968 1 chr3D.!!$R1 993
16 TraesCS3B01G077200 chr3D 28944793 28945721 928 False 1171.0 1171 89.5740 975 1902 1 chr3D.!!$F1 927
17 TraesCS3B01G077200 chr3D 28591100 28591876 776 True 1003.0 1003 90.0510 975 1751 1 chr3D.!!$R3 776
18 TraesCS3B01G077200 chr3D 28518791 28520625 1834 True 241.5 300 85.4295 2074 2547 2 chr3D.!!$R5 473
19 TraesCS3B01G077200 chr6B 131694192 131694954 762 False 983.0 983 89.8200 977 1751 1 chr6B.!!$F1 774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
392 396 0.320073 CCAGACGGTTAGGCGTCAAA 60.320 55.0 0.0 0.0 37.57 2.69 F
1008 1013 0.178958 ACGCTCCGATCCCCTCTTAT 60.179 55.0 0.0 0.0 0.00 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 1671 0.108138 CCTTGACCGTGGACTCATCC 60.108 60.0 0.0 0.0 46.48 3.51 R
2548 5614 0.103026 CGGGAGCGATGTCTGATTCA 59.897 55.0 0.0 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 116 4.452455 CCTAACGGTCATATCATTGAAGGC 59.548 45.833 0.00 0.00 0.00 4.35
274 277 6.514870 CGAAAATCATCAAGTGAGGAAAACCA 60.515 38.462 0.00 0.00 40.92 3.67
335 339 3.701542 ACTGAAGAGATTGATCCTGCGTA 59.298 43.478 0.00 0.00 0.00 4.42
392 396 0.320073 CCAGACGGTTAGGCGTCAAA 60.320 55.000 0.00 0.00 37.57 2.69
466 470 2.028020 GGTTCGGAAGTCACCTGAAGAT 60.028 50.000 0.00 0.00 34.15 2.40
708 713 9.996554 TTCATATCTGTTTGAAGACTTTGACTA 57.003 29.630 0.00 0.00 0.00 2.59
750 755 6.261826 CCTCAGTTCAATTTCTTCAGTCTGTT 59.738 38.462 0.00 0.00 0.00 3.16
752 757 6.260936 TCAGTTCAATTTCTTCAGTCTGTTCC 59.739 38.462 0.00 0.00 0.00 3.62
761 766 5.083122 TCTTCAGTCTGTTCCTCTTCATCT 58.917 41.667 0.00 0.00 0.00 2.90
772 777 6.013379 TGTTCCTCTTCATCTTGTGTTATCCT 60.013 38.462 0.00 0.00 0.00 3.24
780 785 6.653020 TCATCTTGTGTTATCCTGTGCTTAT 58.347 36.000 0.00 0.00 0.00 1.73
829 834 9.216117 CTTCATTTCATCATGATGACTATGCTA 57.784 33.333 32.00 25.46 46.49 3.49
830 835 8.773404 TCATTTCATCATGATGACTATGCTAG 57.227 34.615 32.00 20.53 46.49 3.42
831 836 8.373220 TCATTTCATCATGATGACTATGCTAGT 58.627 33.333 32.00 17.88 46.49 2.57
832 837 7.958053 TTTCATCATGATGACTATGCTAGTG 57.042 36.000 33.02 7.75 46.49 2.74
833 838 5.476614 TCATCATGATGACTATGCTAGTGC 58.523 41.667 30.27 0.00 42.42 4.40
834 839 5.245526 TCATCATGATGACTATGCTAGTGCT 59.754 40.000 30.27 0.00 42.42 4.40
835 840 5.131594 TCATGATGACTATGCTAGTGCTC 57.868 43.478 0.00 0.00 39.59 4.26
836 841 4.831710 TCATGATGACTATGCTAGTGCTCT 59.168 41.667 0.00 0.00 39.59 4.09
837 842 4.581077 TGATGACTATGCTAGTGCTCTG 57.419 45.455 0.00 0.00 39.59 3.35
838 843 2.879002 TGACTATGCTAGTGCTCTGC 57.121 50.000 0.00 1.26 39.59 4.26
839 844 2.382882 TGACTATGCTAGTGCTCTGCT 58.617 47.619 0.00 0.00 39.59 4.24
840 845 3.555966 TGACTATGCTAGTGCTCTGCTA 58.444 45.455 0.00 0.00 39.59 3.49
841 846 4.148079 TGACTATGCTAGTGCTCTGCTAT 58.852 43.478 0.00 1.14 39.59 2.97
842 847 4.022503 TGACTATGCTAGTGCTCTGCTATG 60.023 45.833 0.00 0.00 39.59 2.23
843 848 3.894427 ACTATGCTAGTGCTCTGCTATGT 59.106 43.478 0.00 0.00 37.69 2.29
844 849 3.834489 ATGCTAGTGCTCTGCTATGTT 57.166 42.857 0.00 0.00 40.48 2.71
845 850 3.616956 TGCTAGTGCTCTGCTATGTTT 57.383 42.857 0.00 0.00 40.48 2.83
846 851 4.736126 TGCTAGTGCTCTGCTATGTTTA 57.264 40.909 0.00 0.00 40.48 2.01
847 852 4.433615 TGCTAGTGCTCTGCTATGTTTAC 58.566 43.478 0.00 0.00 40.48 2.01
848 853 4.160439 TGCTAGTGCTCTGCTATGTTTACT 59.840 41.667 0.00 0.00 40.48 2.24
849 854 5.112686 GCTAGTGCTCTGCTATGTTTACTT 58.887 41.667 0.00 0.00 36.03 2.24
850 855 5.582665 GCTAGTGCTCTGCTATGTTTACTTT 59.417 40.000 0.00 0.00 36.03 2.66
851 856 6.092807 GCTAGTGCTCTGCTATGTTTACTTTT 59.907 38.462 0.00 0.00 36.03 2.27
852 857 6.246420 AGTGCTCTGCTATGTTTACTTTTG 57.754 37.500 0.00 0.00 0.00 2.44
853 858 5.997746 AGTGCTCTGCTATGTTTACTTTTGA 59.002 36.000 0.00 0.00 0.00 2.69
854 859 6.148480 AGTGCTCTGCTATGTTTACTTTTGAG 59.852 38.462 0.00 0.00 0.00 3.02
855 860 5.997746 TGCTCTGCTATGTTTACTTTTGAGT 59.002 36.000 0.00 0.00 0.00 3.41
856 861 7.117812 GTGCTCTGCTATGTTTACTTTTGAGTA 59.882 37.037 0.00 0.00 0.00 2.59
857 862 7.117812 TGCTCTGCTATGTTTACTTTTGAGTAC 59.882 37.037 0.00 0.00 0.00 2.73
858 863 7.332182 GCTCTGCTATGTTTACTTTTGAGTACT 59.668 37.037 0.00 0.00 0.00 2.73
859 864 9.209175 CTCTGCTATGTTTACTTTTGAGTACTT 57.791 33.333 0.00 0.00 0.00 2.24
866 871 9.715121 ATGTTTACTTTTGAGTACTTATTCCGA 57.285 29.630 0.00 0.00 0.00 4.55
867 872 9.715121 TGTTTACTTTTGAGTACTTATTCCGAT 57.285 29.630 0.00 0.00 0.00 4.18
868 873 9.968743 GTTTACTTTTGAGTACTTATTCCGATG 57.031 33.333 0.00 0.00 0.00 3.84
869 874 9.715121 TTTACTTTTGAGTACTTATTCCGATGT 57.285 29.630 0.00 0.00 0.00 3.06
872 877 9.367444 ACTTTTGAGTACTTATTCCGATGTAAG 57.633 33.333 0.00 0.00 34.78 2.34
873 878 9.367444 CTTTTGAGTACTTATTCCGATGTAAGT 57.633 33.333 0.00 10.07 42.20 2.24
876 881 8.743085 TGAGTACTTATTCCGATGTAAGTAGT 57.257 34.615 15.05 15.05 44.05 2.73
877 882 9.182214 TGAGTACTTATTCCGATGTAAGTAGTT 57.818 33.333 15.69 8.76 42.63 2.24
882 887 9.715121 ACTTATTCCGATGTAAGTAGTTTTTCA 57.285 29.630 5.39 0.00 38.87 2.69
888 893 9.158233 TCCGATGTAAGTAGTTTTTCATTTAGG 57.842 33.333 0.00 0.00 0.00 2.69
889 894 9.158233 CCGATGTAAGTAGTTTTTCATTTAGGA 57.842 33.333 0.00 0.00 0.00 2.94
900 905 9.764363 AGTTTTTCATTTAGGAATTTCTTCACC 57.236 29.630 0.00 0.00 32.70 4.02
901 906 9.541143 GTTTTTCATTTAGGAATTTCTTCACCA 57.459 29.630 0.00 0.00 32.70 4.17
902 907 9.762933 TTTTTCATTTAGGAATTTCTTCACCAG 57.237 29.630 0.00 0.00 32.70 4.00
903 908 6.515272 TCATTTAGGAATTTCTTCACCAGC 57.485 37.500 0.00 0.00 32.70 4.85
904 909 6.009589 TCATTTAGGAATTTCTTCACCAGCA 58.990 36.000 0.00 0.00 32.70 4.41
905 910 6.493115 TCATTTAGGAATTTCTTCACCAGCAA 59.507 34.615 0.00 0.00 32.70 3.91
906 911 6.723298 TTTAGGAATTTCTTCACCAGCAAA 57.277 33.333 0.00 0.00 32.70 3.68
907 912 6.916360 TTAGGAATTTCTTCACCAGCAAAT 57.084 33.333 0.00 0.00 32.70 2.32
908 913 5.813513 AGGAATTTCTTCACCAGCAAATT 57.186 34.783 0.00 0.00 32.38 1.82
909 914 5.787380 AGGAATTTCTTCACCAGCAAATTC 58.213 37.500 7.23 7.23 41.48 2.17
911 916 5.787380 GAATTTCTTCACCAGCAAATTCCT 58.213 37.500 0.00 0.00 38.48 3.36
912 917 4.853924 TTTCTTCACCAGCAAATTCCTC 57.146 40.909 0.00 0.00 0.00 3.71
913 918 3.507162 TCTTCACCAGCAAATTCCTCA 57.493 42.857 0.00 0.00 0.00 3.86
914 919 3.415212 TCTTCACCAGCAAATTCCTCAG 58.585 45.455 0.00 0.00 0.00 3.35
915 920 2.957402 TCACCAGCAAATTCCTCAGT 57.043 45.000 0.00 0.00 0.00 3.41
916 921 2.507484 TCACCAGCAAATTCCTCAGTG 58.493 47.619 0.00 0.00 0.00 3.66
917 922 2.106338 TCACCAGCAAATTCCTCAGTGA 59.894 45.455 0.00 0.00 0.00 3.41
918 923 2.886523 CACCAGCAAATTCCTCAGTGAA 59.113 45.455 0.00 0.00 0.00 3.18
919 924 3.057736 CACCAGCAAATTCCTCAGTGAAG 60.058 47.826 0.00 0.00 0.00 3.02
920 925 3.181440 ACCAGCAAATTCCTCAGTGAAGA 60.181 43.478 0.00 0.00 0.00 2.87
921 926 3.822735 CCAGCAAATTCCTCAGTGAAGAA 59.177 43.478 6.64 6.64 0.00 2.52
922 927 4.461781 CCAGCAAATTCCTCAGTGAAGAAT 59.538 41.667 10.62 10.62 0.00 2.40
923 928 5.047519 CCAGCAAATTCCTCAGTGAAGAATT 60.048 40.000 19.64 19.64 40.92 2.17
945 950 9.665264 GAATTCATAAAAATCGTCTATTCACCC 57.335 33.333 0.00 0.00 0.00 4.61
946 951 7.562454 TTCATAAAAATCGTCTATTCACCCC 57.438 36.000 0.00 0.00 0.00 4.95
947 952 6.059484 TCATAAAAATCGTCTATTCACCCCC 58.941 40.000 0.00 0.00 0.00 5.40
966 971 2.422832 CCCCCTCTAGTCGATATAACGC 59.577 54.545 0.00 0.00 0.00 4.84
967 972 3.079578 CCCCTCTAGTCGATATAACGCA 58.920 50.000 0.00 0.00 0.00 5.24
968 973 3.119919 CCCCTCTAGTCGATATAACGCAC 60.120 52.174 0.00 0.00 0.00 5.34
969 974 3.752222 CCCTCTAGTCGATATAACGCACT 59.248 47.826 0.00 5.39 0.00 4.40
970 975 4.215827 CCCTCTAGTCGATATAACGCACTT 59.784 45.833 10.84 0.00 0.00 3.16
971 976 5.278364 CCCTCTAGTCGATATAACGCACTTT 60.278 44.000 10.84 0.00 0.00 2.66
972 977 5.852229 CCTCTAGTCGATATAACGCACTTTC 59.148 44.000 10.84 0.00 0.00 2.62
989 994 0.401356 TTCACATGCAAGCTCTCCCA 59.599 50.000 0.00 0.00 0.00 4.37
1007 1012 1.107538 CACGCTCCGATCCCCTCTTA 61.108 60.000 0.00 0.00 0.00 2.10
1008 1013 0.178958 ACGCTCCGATCCCCTCTTAT 60.179 55.000 0.00 0.00 0.00 1.73
1191 1196 0.327867 TCATGAAGCCCCTCATCCCT 60.328 55.000 0.00 0.00 33.66 4.20
1269 1274 1.442526 CCATGGTGAAGCAGGCGATC 61.443 60.000 2.57 0.00 0.00 3.69
1312 1347 0.811616 CAATGGCGAGCAGTCCTACC 60.812 60.000 0.00 0.00 0.00 3.18
1375 1410 0.321387 ACTAGAGCACGACCTCGACA 60.321 55.000 0.78 0.00 43.02 4.35
1382 1417 3.733960 CGACCTCGACACGCTGGA 61.734 66.667 0.00 0.00 43.02 3.86
1734 1785 2.639970 CCAATGTTGGTGCCTCGAA 58.360 52.632 3.58 0.00 43.43 3.71
1739 1790 1.300697 GTTGGTGCCTCGAAGACGT 60.301 57.895 0.00 0.00 40.69 4.34
1751 1802 2.332362 GAAGACGTCCGGCGATGCTA 62.332 60.000 22.10 0.00 44.77 3.49
1753 1804 1.517694 GACGTCCGGCGATGCTAAA 60.518 57.895 22.10 0.00 44.77 1.85
1812 2065 0.240145 GGCGCTTTTACTTGGTGGTC 59.760 55.000 7.64 0.00 0.00 4.02
1813 2066 0.240145 GCGCTTTTACTTGGTGGTCC 59.760 55.000 0.00 0.00 0.00 4.46
1859 2140 6.642683 AAAAGAATGGATAGTTGTCGTACG 57.357 37.500 9.53 9.53 0.00 3.67
1875 2158 3.368539 TCGTACGTTACAATCAATGTGGC 59.631 43.478 16.05 0.00 43.77 5.01
1958 2727 5.245977 AGGTCATTCGATTTTGTTTGGGAAT 59.754 36.000 0.00 0.00 0.00 3.01
1968 2737 7.275560 CGATTTTGTTTGGGAATAAAGATGGAC 59.724 37.037 0.00 0.00 29.37 4.02
1980 2756 0.900182 AGATGGACAGAGGCACGACA 60.900 55.000 0.00 0.00 0.00 4.35
2059 2835 4.771127 GGAATAATCCGCAGCCGA 57.229 55.556 0.00 0.00 35.59 5.54
2068 2844 3.506096 CGCAGCCGACGGAGACTA 61.506 66.667 20.50 0.00 36.29 2.59
2084 2968 6.491403 ACGGAGACTAAGTTAGAAGGTTAACA 59.509 38.462 16.89 0.00 36.27 2.41
2118 3793 4.147449 CTGCGGGCATCGGACTGA 62.147 66.667 0.00 0.00 39.69 3.41
2119 3794 4.451150 TGCGGGCATCGGACTGAC 62.451 66.667 0.00 0.00 39.69 3.51
2152 3827 5.537674 GGGCTTGACCATTGATGAATAGATT 59.462 40.000 0.00 0.00 42.05 2.40
2226 3902 9.715123 TGAAAAATCAATGTGCAGTATATTACG 57.285 29.630 0.00 0.00 0.00 3.18
2238 3923 7.381408 GTGCAGTATATTACGCTAAGATGTCAA 59.619 37.037 0.00 0.00 32.30 3.18
2294 3986 3.063084 GGCACGTCTCTCTCCGGT 61.063 66.667 0.00 0.00 0.00 5.28
2295 3987 2.179517 GCACGTCTCTCTCCGGTG 59.820 66.667 0.00 0.00 0.00 4.94
2299 3991 3.063084 GTCTCTCTCCGGTGCCGT 61.063 66.667 9.90 0.00 37.81 5.68
2313 5359 1.375908 GCCGTGAGAATGTGCTCCA 60.376 57.895 0.00 0.00 33.95 3.86
2319 5365 3.002791 GTGAGAATGTGCTCCAATCGAA 58.997 45.455 0.00 0.00 33.95 3.71
2359 5405 0.813610 CAAAGGTGCCGGCGATGATA 60.814 55.000 23.90 0.00 0.00 2.15
2360 5406 0.107410 AAAGGTGCCGGCGATGATAA 60.107 50.000 23.90 0.00 0.00 1.75
2361 5407 0.814010 AAGGTGCCGGCGATGATAAC 60.814 55.000 23.90 12.38 0.00 1.89
2362 5408 1.522806 GGTGCCGGCGATGATAACA 60.523 57.895 23.90 0.00 0.00 2.41
2387 5437 1.722011 TCCGCGAATGAAAACTCCTC 58.278 50.000 8.23 0.00 0.00 3.71
2390 5440 1.676014 CGCGAATGAAAACTCCTCCCT 60.676 52.381 0.00 0.00 0.00 4.20
2424 5474 6.018425 GCATTACAGAATACACTGACATCTGG 60.018 42.308 0.00 0.00 41.34 3.86
2508 5572 1.407437 GGCCAGTAGCAATGTAGCACT 60.407 52.381 0.00 0.00 46.50 4.40
2509 5573 1.667724 GCCAGTAGCAATGTAGCACTG 59.332 52.381 0.00 0.00 42.97 3.66
2510 5574 2.283298 CCAGTAGCAATGTAGCACTGG 58.717 52.381 16.88 16.88 46.67 4.00
2511 5575 1.667724 CAGTAGCAATGTAGCACTGGC 59.332 52.381 0.00 0.00 38.65 4.85
2548 5614 7.020827 TCCACCTTCTTGTAAGATCTTTGAT 57.979 36.000 14.36 0.00 34.49 2.57
2549 5615 6.881065 TCCACCTTCTTGTAAGATCTTTGATG 59.119 38.462 14.36 9.09 34.49 3.07
2550 5616 6.881065 CCACCTTCTTGTAAGATCTTTGATGA 59.119 38.462 14.36 5.71 34.49 2.92
2551 5617 7.391554 CCACCTTCTTGTAAGATCTTTGATGAA 59.608 37.037 14.36 12.30 34.49 2.57
2557 5623 9.376075 TCTTGTAAGATCTTTGATGAATCAGAC 57.624 33.333 14.36 1.51 38.19 3.51
2558 5624 9.159364 CTTGTAAGATCTTTGATGAATCAGACA 57.841 33.333 14.36 4.28 38.19 3.41
2559 5625 9.676861 TTGTAAGATCTTTGATGAATCAGACAT 57.323 29.630 14.36 0.00 38.19 3.06
2560 5626 9.322773 TGTAAGATCTTTGATGAATCAGACATC 57.677 33.333 14.36 0.00 42.81 3.06
2561 5627 7.479897 AAGATCTTTGATGAATCAGACATCG 57.520 36.000 0.88 0.00 44.64 3.84
2562 5628 5.466058 AGATCTTTGATGAATCAGACATCGC 59.534 40.000 0.00 0.00 44.64 4.58
2563 5629 4.763073 TCTTTGATGAATCAGACATCGCT 58.237 39.130 0.00 0.00 44.64 4.93
2564 5630 4.807834 TCTTTGATGAATCAGACATCGCTC 59.192 41.667 0.00 0.00 44.64 5.03
2565 5631 3.103447 TGATGAATCAGACATCGCTCC 57.897 47.619 0.00 0.00 44.64 4.70
2566 5632 2.224137 TGATGAATCAGACATCGCTCCC 60.224 50.000 0.00 0.00 44.64 4.30
2567 5633 0.103026 TGAATCAGACATCGCTCCCG 59.897 55.000 0.00 0.00 0.00 5.14
2568 5634 0.103208 GAATCAGACATCGCTCCCGT 59.897 55.000 0.00 0.00 35.54 5.28
2569 5635 0.179100 AATCAGACATCGCTCCCGTG 60.179 55.000 0.00 0.00 35.54 4.94
2570 5636 2.635229 ATCAGACATCGCTCCCGTGC 62.635 60.000 0.00 0.00 35.54 5.34
2602 5668 3.508840 CACCGAGGCGCCCAAATC 61.509 66.667 26.15 13.64 0.00 2.17
2603 5669 4.796495 ACCGAGGCGCCCAAATCC 62.796 66.667 26.15 4.60 0.00 3.01
2604 5670 4.794648 CCGAGGCGCCCAAATCCA 62.795 66.667 26.15 0.00 0.00 3.41
2605 5671 2.749839 CGAGGCGCCCAAATCCAA 60.750 61.111 26.15 0.00 0.00 3.53
2606 5672 2.120909 CGAGGCGCCCAAATCCAAT 61.121 57.895 26.15 0.00 0.00 3.16
2607 5673 1.735973 GAGGCGCCCAAATCCAATC 59.264 57.895 26.15 6.83 0.00 2.67
2608 5674 2.063541 GAGGCGCCCAAATCCAATCG 62.064 60.000 26.15 0.00 0.00 3.34
2609 5675 2.278792 GCGCCCAAATCCAATCGC 60.279 61.111 0.00 0.00 35.82 4.58
2610 5676 2.412937 CGCCCAAATCCAATCGCC 59.587 61.111 0.00 0.00 0.00 5.54
2611 5677 2.413963 CGCCCAAATCCAATCGCCA 61.414 57.895 0.00 0.00 0.00 5.69
2612 5678 1.438814 GCCCAAATCCAATCGCCAG 59.561 57.895 0.00 0.00 0.00 4.85
2613 5679 1.438814 CCCAAATCCAATCGCCAGC 59.561 57.895 0.00 0.00 0.00 4.85
2614 5680 1.064621 CCAAATCCAATCGCCAGCG 59.935 57.895 5.50 5.50 41.35 5.18
2615 5681 1.064621 CAAATCCAATCGCCAGCGG 59.935 57.895 12.71 0.00 40.25 5.52
2616 5682 1.077787 AAATCCAATCGCCAGCGGA 60.078 52.632 12.71 1.53 40.25 5.54
2617 5683 1.376609 AAATCCAATCGCCAGCGGAC 61.377 55.000 12.71 0.00 40.25 4.79
2618 5684 3.757248 ATCCAATCGCCAGCGGACC 62.757 63.158 12.71 0.00 40.25 4.46
2619 5685 4.473520 CCAATCGCCAGCGGACCT 62.474 66.667 12.71 0.00 40.25 3.85
2620 5686 2.892425 CAATCGCCAGCGGACCTC 60.892 66.667 12.71 0.00 40.25 3.85
2621 5687 4.162690 AATCGCCAGCGGACCTCC 62.163 66.667 12.71 0.00 40.25 4.30
2626 5692 3.155167 CCAGCGGACCTCCCCTAC 61.155 72.222 0.00 0.00 0.00 3.18
2627 5693 3.155167 CAGCGGACCTCCCCTACC 61.155 72.222 0.00 0.00 0.00 3.18
2628 5694 3.357082 AGCGGACCTCCCCTACCT 61.357 66.667 0.00 0.00 0.00 3.08
2629 5695 2.838693 GCGGACCTCCCCTACCTC 60.839 72.222 0.00 0.00 0.00 3.85
2630 5696 2.123382 CGGACCTCCCCTACCTCC 60.123 72.222 0.00 0.00 0.00 4.30
2631 5697 2.286213 GGACCTCCCCTACCTCCC 59.714 72.222 0.00 0.00 0.00 4.30
2632 5698 2.286213 GACCTCCCCTACCTCCCC 59.714 72.222 0.00 0.00 0.00 4.81
2633 5699 2.542541 ACCTCCCCTACCTCCCCA 60.543 66.667 0.00 0.00 0.00 4.96
2634 5700 2.040779 CCTCCCCTACCTCCCCAC 60.041 72.222 0.00 0.00 0.00 4.61
2635 5701 2.647949 CCTCCCCTACCTCCCCACT 61.648 68.421 0.00 0.00 0.00 4.00
2636 5702 1.396594 CTCCCCTACCTCCCCACTT 59.603 63.158 0.00 0.00 0.00 3.16
2637 5703 0.691413 CTCCCCTACCTCCCCACTTC 60.691 65.000 0.00 0.00 0.00 3.01
2638 5704 1.693103 CCCCTACCTCCCCACTTCC 60.693 68.421 0.00 0.00 0.00 3.46
2639 5705 1.693103 CCCTACCTCCCCACTTCCC 60.693 68.421 0.00 0.00 0.00 3.97
2640 5706 1.693103 CCTACCTCCCCACTTCCCC 60.693 68.421 0.00 0.00 0.00 4.81
2641 5707 1.396594 CTACCTCCCCACTTCCCCT 59.603 63.158 0.00 0.00 0.00 4.79
2642 5708 0.691413 CTACCTCCCCACTTCCCCTC 60.691 65.000 0.00 0.00 0.00 4.30
2643 5709 2.525284 TACCTCCCCACTTCCCCTCG 62.525 65.000 0.00 0.00 0.00 4.63
2644 5710 3.787001 CTCCCCACTTCCCCTCGC 61.787 72.222 0.00 0.00 0.00 5.03
2648 5714 4.452733 CCACTTCCCCTCGCCGTC 62.453 72.222 0.00 0.00 0.00 4.79
2649 5715 4.796231 CACTTCCCCTCGCCGTCG 62.796 72.222 0.00 0.00 0.00 5.12
2717 5783 4.487412 GGTCGCGTCGGATTCGGT 62.487 66.667 5.77 0.00 36.95 4.69
2718 5784 3.245315 GTCGCGTCGGATTCGGTG 61.245 66.667 5.77 0.00 36.95 4.94
2719 5785 3.433453 TCGCGTCGGATTCGGTGA 61.433 61.111 5.77 0.00 36.95 4.02
2720 5786 2.949678 CGCGTCGGATTCGGTGAG 60.950 66.667 0.00 0.00 36.95 3.51
2721 5787 3.255379 GCGTCGGATTCGGTGAGC 61.255 66.667 0.00 0.00 36.95 4.26
2722 5788 2.490217 CGTCGGATTCGGTGAGCT 59.510 61.111 0.00 0.00 36.95 4.09
2723 5789 1.586564 CGTCGGATTCGGTGAGCTC 60.587 63.158 6.82 6.82 36.95 4.09
2724 5790 1.586564 GTCGGATTCGGTGAGCTCG 60.587 63.158 9.64 0.00 36.95 5.03
2725 5791 2.278857 CGGATTCGGTGAGCTCGG 60.279 66.667 9.64 0.77 0.00 4.63
2726 5792 2.586357 GGATTCGGTGAGCTCGGC 60.586 66.667 9.64 4.32 0.00 5.54
2727 5793 2.496817 GATTCGGTGAGCTCGGCT 59.503 61.111 9.64 0.00 43.88 5.52
2728 5794 1.880340 GATTCGGTGAGCTCGGCTG 60.880 63.158 9.64 9.75 39.88 4.85
2729 5795 4.742201 TTCGGTGAGCTCGGCTGC 62.742 66.667 9.64 0.00 39.88 5.25
2738 5804 2.433145 CTCGGCTGCGAGCTTCAA 60.433 61.111 8.17 0.00 41.99 2.69
2739 5805 1.812922 CTCGGCTGCGAGCTTCAAT 60.813 57.895 8.17 0.00 41.99 2.57
2740 5806 2.033328 CTCGGCTGCGAGCTTCAATG 62.033 60.000 8.17 0.00 41.99 2.82
2741 5807 2.796651 GGCTGCGAGCTTCAATGG 59.203 61.111 7.85 0.00 41.99 3.16
2742 5808 2.101770 GCTGCGAGCTTCAATGGC 59.898 61.111 0.00 0.00 38.45 4.40
2743 5809 2.404995 GCTGCGAGCTTCAATGGCT 61.405 57.895 0.00 0.00 43.26 4.75
2744 5810 1.428219 CTGCGAGCTTCAATGGCTG 59.572 57.895 0.00 0.00 40.40 4.85
2745 5811 1.989966 CTGCGAGCTTCAATGGCTGG 61.990 60.000 0.00 0.00 40.40 4.85
2746 5812 2.768492 GCGAGCTTCAATGGCTGGG 61.768 63.158 0.00 0.00 40.40 4.45
2747 5813 2.768492 CGAGCTTCAATGGCTGGGC 61.768 63.158 0.00 0.00 40.40 5.36
2748 5814 1.379576 GAGCTTCAATGGCTGGGCT 60.380 57.895 0.00 0.00 40.40 5.19
2749 5815 0.969409 GAGCTTCAATGGCTGGGCTT 60.969 55.000 0.00 0.00 40.40 4.35
2750 5816 0.543646 AGCTTCAATGGCTGGGCTTT 60.544 50.000 0.00 0.00 38.73 3.51
2751 5817 0.322648 GCTTCAATGGCTGGGCTTTT 59.677 50.000 0.00 0.00 0.00 2.27
2752 5818 1.673923 GCTTCAATGGCTGGGCTTTTC 60.674 52.381 0.00 0.00 0.00 2.29
2753 5819 1.897802 CTTCAATGGCTGGGCTTTTCT 59.102 47.619 0.00 0.00 0.00 2.52
2754 5820 2.014010 TCAATGGCTGGGCTTTTCTT 57.986 45.000 0.00 0.00 0.00 2.52
2755 5821 1.895131 TCAATGGCTGGGCTTTTCTTC 59.105 47.619 0.00 0.00 0.00 2.87
2756 5822 1.066645 CAATGGCTGGGCTTTTCTTCC 60.067 52.381 0.00 0.00 0.00 3.46
2757 5823 0.615827 ATGGCTGGGCTTTTCTTCCC 60.616 55.000 0.00 0.00 42.93 3.97
2758 5824 1.984570 GGCTGGGCTTTTCTTCCCC 60.985 63.158 0.00 0.00 41.92 4.81
2759 5825 1.228862 GCTGGGCTTTTCTTCCCCA 60.229 57.895 0.00 0.00 46.24 4.96
2761 5827 3.455737 TGGGCTTTTCTTCCCCAAG 57.544 52.632 0.00 0.00 45.48 3.61
2762 5828 0.178935 TGGGCTTTTCTTCCCCAAGG 60.179 55.000 0.00 0.00 45.48 3.61
2763 5829 1.544825 GGGCTTTTCTTCCCCAAGGC 61.545 60.000 0.00 0.00 41.26 4.35
2764 5830 1.586541 GCTTTTCTTCCCCAAGGCG 59.413 57.895 0.00 0.00 0.00 5.52
2765 5831 1.877576 GCTTTTCTTCCCCAAGGCGG 61.878 60.000 0.00 0.00 0.00 6.13
2766 5832 0.251165 CTTTTCTTCCCCAAGGCGGA 60.251 55.000 0.00 0.00 36.56 5.54
2767 5833 0.186386 TTTTCTTCCCCAAGGCGGAA 59.814 50.000 8.24 8.24 37.04 4.30
2770 5836 2.434331 TTCCCCAAGGCGGAAGTG 59.566 61.111 5.32 0.00 34.40 3.16
2771 5837 3.204467 TTCCCCAAGGCGGAAGTGG 62.204 63.158 5.32 0.00 34.40 4.00
2774 5840 4.351054 CCAAGGCGGAAGTGGGCT 62.351 66.667 0.00 0.00 42.77 5.19
2775 5841 3.058160 CAAGGCGGAAGTGGGCTG 61.058 66.667 0.00 0.00 40.54 4.85
2776 5842 4.351054 AAGGCGGAAGTGGGCTGG 62.351 66.667 0.00 0.00 40.54 4.85
2812 5878 4.785453 GCGGAGGGTCTGGGCAAG 62.785 72.222 0.00 0.00 0.00 4.01
2813 5879 4.101448 CGGAGGGTCTGGGCAAGG 62.101 72.222 0.00 0.00 0.00 3.61
2814 5880 4.432741 GGAGGGTCTGGGCAAGGC 62.433 72.222 0.00 0.00 0.00 4.35
2815 5881 3.650950 GAGGGTCTGGGCAAGGCA 61.651 66.667 0.00 0.00 29.21 4.75
2816 5882 2.943265 AGGGTCTGGGCAAGGCAT 60.943 61.111 0.00 0.00 29.21 4.40
2817 5883 2.757099 GGGTCTGGGCAAGGCATG 60.757 66.667 0.00 0.00 29.21 4.06
2818 5884 2.757099 GGTCTGGGCAAGGCATGG 60.757 66.667 0.00 0.00 29.21 3.66
2819 5885 2.757099 GTCTGGGCAAGGCATGGG 60.757 66.667 0.00 0.00 0.00 4.00
2820 5886 4.764771 TCTGGGCAAGGCATGGGC 62.765 66.667 0.00 0.00 40.13 5.36
2832 5898 4.634703 ATGGGCGTGCGGTGTGAA 62.635 61.111 0.00 0.00 0.00 3.18
2837 5903 3.414700 CGTGCGGTGTGAAGGCTC 61.415 66.667 0.00 0.00 0.00 4.70
2838 5904 2.031163 GTGCGGTGTGAAGGCTCT 59.969 61.111 0.00 0.00 0.00 4.09
2839 5905 2.031012 TGCGGTGTGAAGGCTCTG 59.969 61.111 0.00 0.00 0.00 3.35
2840 5906 2.743928 GCGGTGTGAAGGCTCTGG 60.744 66.667 0.00 0.00 0.00 3.86
2841 5907 2.046892 CGGTGTGAAGGCTCTGGG 60.047 66.667 0.00 0.00 0.00 4.45
2842 5908 2.360475 GGTGTGAAGGCTCTGGGC 60.360 66.667 0.00 0.00 40.90 5.36
2843 5909 2.743928 GTGTGAAGGCTCTGGGCG 60.744 66.667 0.00 0.00 42.94 6.13
2844 5910 4.020617 TGTGAAGGCTCTGGGCGG 62.021 66.667 0.00 0.00 42.94 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 116 5.106555 GCCCGACATGATAAGACATAAATGG 60.107 44.000 0.00 0.00 0.00 3.16
274 277 3.307833 GGGTTTGAAGGTGTTTGGGTTTT 60.308 43.478 0.00 0.00 0.00 2.43
335 339 1.183549 AGGTAACAAGCGTCGGATCT 58.816 50.000 0.00 0.00 41.41 2.75
392 396 3.678965 TCCTCTTGGATGCTCTAGACT 57.321 47.619 0.00 0.00 37.46 3.24
413 417 1.270625 GGTCACTCGGTGATCCACAAA 60.271 52.381 9.47 0.00 44.63 2.83
466 470 1.816074 GCCCAATCACTCGTGGTAAA 58.184 50.000 0.00 0.00 32.60 2.01
539 543 3.432608 GGAGCGGCTAGGTATTTAAACCA 60.433 47.826 0.60 0.00 42.40 3.67
708 713 7.557719 TGAACTGAGGAAATTGAGAAAGTCTTT 59.442 33.333 0.00 0.00 0.00 2.52
750 755 5.485353 ACAGGATAACACAAGATGAAGAGGA 59.515 40.000 0.00 0.00 0.00 3.71
752 757 5.064452 GCACAGGATAACACAAGATGAAGAG 59.936 44.000 0.00 0.00 0.00 2.85
761 766 4.588899 AGCATAAGCACAGGATAACACAA 58.411 39.130 0.00 0.00 45.49 3.33
772 777 4.931601 CAGAGTACAGAAAGCATAAGCACA 59.068 41.667 0.00 0.00 45.49 4.57
780 785 3.133691 CAAGCACAGAGTACAGAAAGCA 58.866 45.455 0.00 0.00 0.00 3.91
829 834 5.997746 TCAAAAGTAAACATAGCAGAGCACT 59.002 36.000 0.00 0.00 0.00 4.40
830 835 6.073003 ACTCAAAAGTAAACATAGCAGAGCAC 60.073 38.462 0.00 0.00 32.59 4.40
831 836 5.997746 ACTCAAAAGTAAACATAGCAGAGCA 59.002 36.000 0.00 0.00 32.59 4.26
832 837 6.487689 ACTCAAAAGTAAACATAGCAGAGC 57.512 37.500 0.00 0.00 32.59 4.09
833 838 8.764524 AGTACTCAAAAGTAAACATAGCAGAG 57.235 34.615 0.00 0.00 39.66 3.35
840 845 9.715121 TCGGAATAAGTACTCAAAAGTAAACAT 57.285 29.630 0.00 0.00 39.66 2.71
841 846 9.715121 ATCGGAATAAGTACTCAAAAGTAAACA 57.285 29.630 0.00 0.00 39.66 2.83
842 847 9.968743 CATCGGAATAAGTACTCAAAAGTAAAC 57.031 33.333 0.00 0.00 39.66 2.01
843 848 9.715121 ACATCGGAATAAGTACTCAAAAGTAAA 57.285 29.630 0.00 0.00 39.66 2.01
846 851 9.367444 CTTACATCGGAATAAGTACTCAAAAGT 57.633 33.333 0.00 0.00 39.66 2.66
847 852 9.367444 ACTTACATCGGAATAAGTACTCAAAAG 57.633 33.333 13.45 0.00 39.34 2.27
850 855 9.182214 ACTACTTACATCGGAATAAGTACTCAA 57.818 33.333 15.76 0.00 41.01 3.02
851 856 8.743085 ACTACTTACATCGGAATAAGTACTCA 57.257 34.615 15.76 0.00 41.01 3.41
856 861 9.715121 TGAAAAACTACTTACATCGGAATAAGT 57.285 29.630 17.20 17.20 42.75 2.24
862 867 9.158233 CCTAAATGAAAAACTACTTACATCGGA 57.842 33.333 0.00 0.00 0.00 4.55
863 868 9.158233 TCCTAAATGAAAAACTACTTACATCGG 57.842 33.333 0.00 0.00 0.00 4.18
874 879 9.764363 GGTGAAGAAATTCCTAAATGAAAAACT 57.236 29.630 0.00 0.00 0.00 2.66
875 880 9.541143 TGGTGAAGAAATTCCTAAATGAAAAAC 57.459 29.630 0.00 0.00 0.00 2.43
876 881 9.762933 CTGGTGAAGAAATTCCTAAATGAAAAA 57.237 29.630 0.00 0.00 0.00 1.94
877 882 7.872483 GCTGGTGAAGAAATTCCTAAATGAAAA 59.128 33.333 0.00 0.00 0.00 2.29
878 883 7.015098 TGCTGGTGAAGAAATTCCTAAATGAAA 59.985 33.333 0.00 0.00 0.00 2.69
879 884 6.493115 TGCTGGTGAAGAAATTCCTAAATGAA 59.507 34.615 0.00 0.00 0.00 2.57
880 885 6.009589 TGCTGGTGAAGAAATTCCTAAATGA 58.990 36.000 0.00 0.00 0.00 2.57
881 886 6.271488 TGCTGGTGAAGAAATTCCTAAATG 57.729 37.500 0.00 0.00 0.00 2.32
882 887 6.916360 TTGCTGGTGAAGAAATTCCTAAAT 57.084 33.333 0.00 0.00 0.00 1.40
883 888 6.723298 TTTGCTGGTGAAGAAATTCCTAAA 57.277 33.333 0.00 0.00 0.00 1.85
884 889 6.916360 ATTTGCTGGTGAAGAAATTCCTAA 57.084 33.333 0.00 0.00 0.00 2.69
885 890 6.071391 GGAATTTGCTGGTGAAGAAATTCCTA 60.071 38.462 20.40 0.00 45.38 2.94
886 891 5.279657 GGAATTTGCTGGTGAAGAAATTCCT 60.280 40.000 20.40 0.00 45.38 3.36
887 892 4.931601 GGAATTTGCTGGTGAAGAAATTCC 59.068 41.667 15.62 15.62 44.36 3.01
888 893 5.787380 AGGAATTTGCTGGTGAAGAAATTC 58.213 37.500 0.00 0.00 39.12 2.17
889 894 5.305128 TGAGGAATTTGCTGGTGAAGAAATT 59.695 36.000 0.00 0.00 32.77 1.82
890 895 4.834496 TGAGGAATTTGCTGGTGAAGAAAT 59.166 37.500 0.00 0.00 0.00 2.17
891 896 4.214310 TGAGGAATTTGCTGGTGAAGAAA 58.786 39.130 0.00 0.00 0.00 2.52
892 897 3.822735 CTGAGGAATTTGCTGGTGAAGAA 59.177 43.478 0.00 0.00 0.00 2.52
893 898 3.181440 ACTGAGGAATTTGCTGGTGAAGA 60.181 43.478 0.00 0.00 0.00 2.87
894 899 3.057736 CACTGAGGAATTTGCTGGTGAAG 60.058 47.826 12.18 0.00 0.00 3.02
895 900 2.886523 CACTGAGGAATTTGCTGGTGAA 59.113 45.455 12.18 0.00 0.00 3.18
896 901 2.106338 TCACTGAGGAATTTGCTGGTGA 59.894 45.455 14.65 14.65 29.87 4.02
897 902 2.507484 TCACTGAGGAATTTGCTGGTG 58.493 47.619 11.64 11.64 0.00 4.17
898 903 2.957402 TCACTGAGGAATTTGCTGGT 57.043 45.000 0.00 0.00 0.00 4.00
899 904 3.415212 TCTTCACTGAGGAATTTGCTGG 58.585 45.455 0.00 0.00 0.00 4.85
900 905 5.640189 ATTCTTCACTGAGGAATTTGCTG 57.360 39.130 9.96 0.00 35.36 4.41
901 906 5.771666 TGAATTCTTCACTGAGGAATTTGCT 59.228 36.000 23.03 7.70 44.41 3.91
902 907 6.017400 TGAATTCTTCACTGAGGAATTTGC 57.983 37.500 23.03 15.08 44.41 3.68
908 913 8.668353 CGATTTTTATGAATTCTTCACTGAGGA 58.332 33.333 7.05 0.00 43.48 3.71
909 914 8.454106 ACGATTTTTATGAATTCTTCACTGAGG 58.546 33.333 7.05 0.00 43.48 3.86
910 915 9.483062 GACGATTTTTATGAATTCTTCACTGAG 57.517 33.333 7.05 0.00 43.48 3.35
911 916 9.219603 AGACGATTTTTATGAATTCTTCACTGA 57.780 29.630 7.05 0.00 43.48 3.41
919 924 9.665264 GGGTGAATAGACGATTTTTATGAATTC 57.335 33.333 0.00 0.00 0.00 2.17
920 925 8.630037 GGGGTGAATAGACGATTTTTATGAATT 58.370 33.333 0.00 0.00 0.00 2.17
921 926 7.230712 GGGGGTGAATAGACGATTTTTATGAAT 59.769 37.037 0.00 0.00 0.00 2.57
922 927 6.544564 GGGGGTGAATAGACGATTTTTATGAA 59.455 38.462 0.00 0.00 0.00 2.57
923 928 6.059484 GGGGGTGAATAGACGATTTTTATGA 58.941 40.000 0.00 0.00 0.00 2.15
924 929 6.313744 GGGGGTGAATAGACGATTTTTATG 57.686 41.667 0.00 0.00 0.00 1.90
945 950 2.422832 GCGTTATATCGACTAGAGGGGG 59.577 54.545 7.38 0.00 0.00 5.40
946 951 3.079578 TGCGTTATATCGACTAGAGGGG 58.920 50.000 7.38 0.00 0.00 4.79
947 952 3.752222 AGTGCGTTATATCGACTAGAGGG 59.248 47.826 7.38 0.00 0.00 4.30
948 953 5.359716 AAGTGCGTTATATCGACTAGAGG 57.640 43.478 7.38 0.00 0.00 3.69
949 954 6.357503 GTGAAAGTGCGTTATATCGACTAGAG 59.642 42.308 7.38 0.00 0.00 2.43
950 955 6.183360 TGTGAAAGTGCGTTATATCGACTAGA 60.183 38.462 7.38 0.00 0.00 2.43
951 956 5.969435 TGTGAAAGTGCGTTATATCGACTAG 59.031 40.000 7.38 0.00 0.00 2.57
952 957 5.882553 TGTGAAAGTGCGTTATATCGACTA 58.117 37.500 7.38 0.00 0.00 2.59
953 958 4.740268 TGTGAAAGTGCGTTATATCGACT 58.260 39.130 7.38 5.26 0.00 4.18
954 959 5.423717 CATGTGAAAGTGCGTTATATCGAC 58.576 41.667 7.38 3.28 0.00 4.20
955 960 4.026062 GCATGTGAAAGTGCGTTATATCGA 60.026 41.667 7.38 0.00 0.00 3.59
956 961 4.203828 GCATGTGAAAGTGCGTTATATCG 58.796 43.478 0.00 0.00 0.00 2.92
957 962 5.155509 TGCATGTGAAAGTGCGTTATATC 57.844 39.130 0.00 0.00 44.11 1.63
958 963 5.559427 TTGCATGTGAAAGTGCGTTATAT 57.441 34.783 0.00 0.00 44.11 0.86
959 964 4.671508 GCTTGCATGTGAAAGTGCGTTATA 60.672 41.667 2.85 0.00 44.11 0.98
960 965 3.825308 CTTGCATGTGAAAGTGCGTTAT 58.175 40.909 0.00 0.00 44.11 1.89
961 966 2.604373 GCTTGCATGTGAAAGTGCGTTA 60.604 45.455 2.85 0.00 44.11 3.18
962 967 1.865248 GCTTGCATGTGAAAGTGCGTT 60.865 47.619 2.85 0.00 44.11 4.84
963 968 0.318107 GCTTGCATGTGAAAGTGCGT 60.318 50.000 2.85 0.00 44.11 5.24
964 969 0.039798 AGCTTGCATGTGAAAGTGCG 60.040 50.000 2.85 0.00 44.11 5.34
965 970 1.268899 AGAGCTTGCATGTGAAAGTGC 59.731 47.619 2.85 0.00 41.61 4.40
966 971 2.095364 GGAGAGCTTGCATGTGAAAGTG 60.095 50.000 2.85 0.00 33.13 3.16
967 972 2.157738 GGAGAGCTTGCATGTGAAAGT 58.842 47.619 2.85 0.00 33.13 2.66
968 973 1.471684 GGGAGAGCTTGCATGTGAAAG 59.528 52.381 1.14 0.00 33.72 2.62
969 974 1.202915 TGGGAGAGCTTGCATGTGAAA 60.203 47.619 1.14 0.00 0.00 2.69
970 975 0.401356 TGGGAGAGCTTGCATGTGAA 59.599 50.000 1.14 0.00 0.00 3.18
971 976 0.321919 GTGGGAGAGCTTGCATGTGA 60.322 55.000 1.14 0.00 0.00 3.58
972 977 1.642037 CGTGGGAGAGCTTGCATGTG 61.642 60.000 1.14 0.00 0.00 3.21
989 994 0.178958 ATAAGAGGGGATCGGAGCGT 60.179 55.000 0.00 0.00 0.00 5.07
1007 1012 1.217511 CTCGTGAGGCTCTGCACAT 59.782 57.895 16.72 0.00 34.78 3.21
1008 1013 2.653115 CTCGTGAGGCTCTGCACA 59.347 61.111 16.72 0.00 34.78 4.57
1067 1072 2.988839 ATCTTGCACCCCAGAGCCC 61.989 63.158 0.00 0.00 0.00 5.19
1071 1076 1.685224 GACCATCTTGCACCCCAGA 59.315 57.895 0.00 0.00 0.00 3.86
1191 1196 1.580942 GTACCGGTAGTGCGTCACA 59.419 57.895 16.41 0.00 36.74 3.58
1253 1258 1.078918 CTGATCGCCTGCTTCACCA 60.079 57.895 0.00 0.00 0.00 4.17
1269 1274 4.415150 ATGTCCTGCACCCGCCTG 62.415 66.667 0.00 0.00 37.32 4.85
1296 1301 3.075005 GGGTAGGACTGCTCGCCA 61.075 66.667 0.00 0.00 0.00 5.69
1375 1410 1.614241 GGGTAGTCCATGTCCAGCGT 61.614 60.000 0.00 0.00 35.00 5.07
1468 1503 2.025727 CCGCGTGAGATACCGGAC 59.974 66.667 9.46 0.00 42.25 4.79
1557 1592 1.884926 GCGCATCCTCCTGTACAGC 60.885 63.158 17.86 4.12 0.00 4.40
1565 1600 4.916293 TCATGGCGCGCATCCTCC 62.916 66.667 34.42 14.98 0.00 4.30
1605 1656 1.000019 ATCCTCGTCGTCCTTGGGA 60.000 57.895 0.00 0.00 0.00 4.37
1620 1671 0.108138 CCTTGACCGTGGACTCATCC 60.108 60.000 0.00 0.00 46.48 3.51
1734 1785 1.940883 TTTAGCATCGCCGGACGTCT 61.941 55.000 16.46 10.05 44.19 4.18
1739 1790 0.248743 CGTACTTTAGCATCGCCGGA 60.249 55.000 5.05 0.00 0.00 5.14
1751 1802 3.952628 GAGCCGGCTGCCGTACTTT 62.953 63.158 38.41 18.07 46.80 2.66
1841 2108 5.953183 TGTAACGTACGACAACTATCCATT 58.047 37.500 24.41 3.35 0.00 3.16
1859 2140 3.308595 TCGATCGCCACATTGATTGTAAC 59.691 43.478 11.09 0.00 36.57 2.50
1934 2219 4.148838 TCCCAAACAAAATCGAATGACCT 58.851 39.130 0.00 0.00 0.00 3.85
1958 2727 2.094182 GTCGTGCCTCTGTCCATCTTTA 60.094 50.000 0.00 0.00 0.00 1.85
1968 2737 4.007644 TGCCCTGTCGTGCCTCTG 62.008 66.667 0.00 0.00 0.00 3.35
2059 2835 6.491403 TGTTAACCTTCTAACTTAGTCTCCGT 59.509 38.462 2.48 0.00 33.67 4.69
2067 2843 6.464749 CCCACACCTGTTAACCTTCTAACTTA 60.465 42.308 2.48 0.00 33.67 2.24
2068 2844 5.374071 CCACACCTGTTAACCTTCTAACTT 58.626 41.667 2.48 0.00 33.67 2.66
2084 2968 3.175710 GTCCCCACACCCACACCT 61.176 66.667 0.00 0.00 0.00 4.00
2105 3779 3.718210 GACCGTCAGTCCGATGCCC 62.718 68.421 0.00 0.00 39.84 5.36
2127 3802 2.601240 TTCATCAATGGTCAAGCCCA 57.399 45.000 0.00 0.00 39.27 5.36
2294 3986 1.375908 GGAGCACATTCTCACGGCA 60.376 57.895 0.00 0.00 34.84 5.69
2295 3987 0.955428 TTGGAGCACATTCTCACGGC 60.955 55.000 0.00 0.00 34.84 5.68
2299 3991 3.002791 GTTCGATTGGAGCACATTCTCA 58.997 45.455 0.00 0.00 34.84 3.27
2319 5365 3.678717 CTCCCATTCGACGACGCGT 62.679 63.158 13.85 13.85 45.10 6.01
2359 5405 2.672961 TCATTCGCGGAAGAGATGTT 57.327 45.000 6.13 0.00 40.37 2.71
2360 5406 2.672961 TTCATTCGCGGAAGAGATGT 57.327 45.000 6.13 0.00 40.37 3.06
2361 5407 3.372206 AGTTTTCATTCGCGGAAGAGATG 59.628 43.478 6.13 0.00 40.37 2.90
2362 5408 3.600388 AGTTTTCATTCGCGGAAGAGAT 58.400 40.909 6.13 0.00 40.37 2.75
2484 5546 2.807108 GCTACATTGCTACTGGCCTACC 60.807 54.545 3.32 0.00 40.92 3.18
2490 5552 2.283298 CCAGTGCTACATTGCTACTGG 58.717 52.381 16.89 16.89 45.65 4.00
2508 5572 1.225426 GGATGATGAGCCACAGCCA 59.775 57.895 0.00 0.00 41.47 4.75
2509 5573 1.225426 TGGATGATGAGCCACAGCC 59.775 57.895 0.00 0.00 42.07 4.85
2510 5574 4.970621 TGGATGATGAGCCACAGC 57.029 55.556 0.00 0.00 30.61 4.40
2514 5578 1.588239 AGAAGGTGGATGATGAGCCA 58.412 50.000 0.00 0.00 34.34 4.75
2548 5614 0.103026 CGGGAGCGATGTCTGATTCA 59.897 55.000 0.00 0.00 0.00 2.57
2549 5615 0.103208 ACGGGAGCGATGTCTGATTC 59.897 55.000 0.00 0.00 0.00 2.52
2550 5616 0.179100 CACGGGAGCGATGTCTGATT 60.179 55.000 0.00 0.00 0.00 2.57
2551 5617 1.439228 CACGGGAGCGATGTCTGAT 59.561 57.895 0.00 0.00 0.00 2.90
2585 5651 3.508840 GATTTGGGCGCCTCGGTG 61.509 66.667 28.56 0.00 0.00 4.94
2586 5652 4.796495 GGATTTGGGCGCCTCGGT 62.796 66.667 28.56 10.70 0.00 4.69
2587 5653 4.794648 TGGATTTGGGCGCCTCGG 62.795 66.667 28.56 0.00 0.00 4.63
2588 5654 2.063541 GATTGGATTTGGGCGCCTCG 62.064 60.000 28.56 0.00 0.00 4.63
2589 5655 1.735973 GATTGGATTTGGGCGCCTC 59.264 57.895 28.56 16.08 0.00 4.70
2590 5656 2.120909 CGATTGGATTTGGGCGCCT 61.121 57.895 28.56 5.85 0.00 5.52
2591 5657 2.412937 CGATTGGATTTGGGCGCC 59.587 61.111 21.18 21.18 0.00 6.53
2592 5658 2.278792 GCGATTGGATTTGGGCGC 60.279 61.111 0.00 0.00 37.60 6.53
2593 5659 2.340453 CTGGCGATTGGATTTGGGCG 62.340 60.000 0.00 0.00 0.00 6.13
2594 5660 1.438814 CTGGCGATTGGATTTGGGC 59.561 57.895 0.00 0.00 0.00 5.36
2595 5661 1.438814 GCTGGCGATTGGATTTGGG 59.561 57.895 0.00 0.00 0.00 4.12
2596 5662 1.064621 CGCTGGCGATTGGATTTGG 59.935 57.895 9.51 0.00 42.83 3.28
2597 5663 1.064621 CCGCTGGCGATTGGATTTG 59.935 57.895 16.79 0.00 42.83 2.32
2598 5664 1.077787 TCCGCTGGCGATTGGATTT 60.078 52.632 16.79 0.00 42.83 2.17
2599 5665 1.819632 GTCCGCTGGCGATTGGATT 60.820 57.895 16.79 0.00 42.83 3.01
2600 5666 2.203070 GTCCGCTGGCGATTGGAT 60.203 61.111 16.79 0.00 42.83 3.41
2601 5667 4.467084 GGTCCGCTGGCGATTGGA 62.467 66.667 16.79 2.15 42.83 3.53
2602 5668 4.473520 AGGTCCGCTGGCGATTGG 62.474 66.667 16.79 0.00 42.83 3.16
2603 5669 2.892425 GAGGTCCGCTGGCGATTG 60.892 66.667 16.79 0.00 42.83 2.67
2604 5670 4.162690 GGAGGTCCGCTGGCGATT 62.163 66.667 16.79 0.00 42.83 3.34
2613 5679 2.123382 GGAGGTAGGGGAGGTCCG 60.123 72.222 0.00 0.00 36.71 4.79
2614 5680 2.286213 GGGAGGTAGGGGAGGTCC 59.714 72.222 0.00 0.00 0.00 4.46
2615 5681 2.286213 GGGGAGGTAGGGGAGGTC 59.714 72.222 0.00 0.00 0.00 3.85
2616 5682 2.542541 TGGGGAGGTAGGGGAGGT 60.543 66.667 0.00 0.00 0.00 3.85
2617 5683 2.040779 GTGGGGAGGTAGGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
2618 5684 0.691413 GAAGTGGGGAGGTAGGGGAG 60.691 65.000 0.00 0.00 0.00 4.30
2619 5685 1.394963 GAAGTGGGGAGGTAGGGGA 59.605 63.158 0.00 0.00 0.00 4.81
2620 5686 1.693103 GGAAGTGGGGAGGTAGGGG 60.693 68.421 0.00 0.00 0.00 4.79
2621 5687 1.693103 GGGAAGTGGGGAGGTAGGG 60.693 68.421 0.00 0.00 0.00 3.53
2622 5688 1.693103 GGGGAAGTGGGGAGGTAGG 60.693 68.421 0.00 0.00 0.00 3.18
2623 5689 0.691413 GAGGGGAAGTGGGGAGGTAG 60.691 65.000 0.00 0.00 0.00 3.18
2624 5690 1.394963 GAGGGGAAGTGGGGAGGTA 59.605 63.158 0.00 0.00 0.00 3.08
2625 5691 2.125225 GAGGGGAAGTGGGGAGGT 59.875 66.667 0.00 0.00 0.00 3.85
2626 5692 3.083997 CGAGGGGAAGTGGGGAGG 61.084 72.222 0.00 0.00 0.00 4.30
2627 5693 3.787001 GCGAGGGGAAGTGGGGAG 61.787 72.222 0.00 0.00 0.00 4.30
2631 5697 4.452733 GACGGCGAGGGGAAGTGG 62.453 72.222 16.62 0.00 0.00 4.00
2632 5698 4.796231 CGACGGCGAGGGGAAGTG 62.796 72.222 16.62 0.00 40.82 3.16
2700 5766 4.487412 ACCGAATCCGACGCGACC 62.487 66.667 15.93 2.61 38.22 4.79
2701 5767 3.245315 CACCGAATCCGACGCGAC 61.245 66.667 15.93 5.54 38.22 5.19
2702 5768 3.391160 CTCACCGAATCCGACGCGA 62.391 63.158 15.93 0.00 38.22 5.87
2703 5769 2.949678 CTCACCGAATCCGACGCG 60.950 66.667 3.53 3.53 38.22 6.01
2704 5770 3.255379 GCTCACCGAATCCGACGC 61.255 66.667 0.00 0.00 38.22 5.19
2705 5771 1.586564 GAGCTCACCGAATCCGACG 60.587 63.158 9.40 0.00 38.22 5.12
2706 5772 1.586564 CGAGCTCACCGAATCCGAC 60.587 63.158 15.40 0.00 38.22 4.79
2707 5773 2.771639 CCGAGCTCACCGAATCCGA 61.772 63.158 15.40 0.00 38.22 4.55
2708 5774 2.278857 CCGAGCTCACCGAATCCG 60.279 66.667 15.40 0.00 0.00 4.18
2709 5775 2.586357 GCCGAGCTCACCGAATCC 60.586 66.667 15.40 0.00 0.00 3.01
2710 5776 1.880340 CAGCCGAGCTCACCGAATC 60.880 63.158 15.40 0.00 36.40 2.52
2711 5777 2.185350 CAGCCGAGCTCACCGAAT 59.815 61.111 15.40 0.00 36.40 3.34
2712 5778 4.742201 GCAGCCGAGCTCACCGAA 62.742 66.667 15.40 0.00 36.40 4.30
2722 5788 2.102438 CATTGAAGCTCGCAGCCGA 61.102 57.895 4.77 0.00 43.77 5.54
2723 5789 2.402388 CATTGAAGCTCGCAGCCG 59.598 61.111 4.77 0.00 43.77 5.52
2724 5790 2.796651 CCATTGAAGCTCGCAGCC 59.203 61.111 4.77 0.00 43.77 4.85
2725 5791 2.101770 GCCATTGAAGCTCGCAGC 59.898 61.111 0.00 0.47 42.84 5.25
2726 5792 1.428219 CAGCCATTGAAGCTCGCAG 59.572 57.895 0.00 0.00 38.95 5.18
2727 5793 2.042259 CCAGCCATTGAAGCTCGCA 61.042 57.895 0.00 0.00 38.95 5.10
2728 5794 2.768492 CCCAGCCATTGAAGCTCGC 61.768 63.158 0.00 0.00 38.95 5.03
2729 5795 2.768492 GCCCAGCCATTGAAGCTCG 61.768 63.158 0.00 0.00 38.95 5.03
2730 5796 0.969409 AAGCCCAGCCATTGAAGCTC 60.969 55.000 0.00 0.00 38.95 4.09
2731 5797 0.543646 AAAGCCCAGCCATTGAAGCT 60.544 50.000 0.00 0.00 42.70 3.74
2732 5798 0.322648 AAAAGCCCAGCCATTGAAGC 59.677 50.000 0.00 0.00 0.00 3.86
2733 5799 1.897802 AGAAAAGCCCAGCCATTGAAG 59.102 47.619 0.00 0.00 0.00 3.02
2734 5800 2.014010 AGAAAAGCCCAGCCATTGAA 57.986 45.000 0.00 0.00 0.00 2.69
2735 5801 1.895131 GAAGAAAAGCCCAGCCATTGA 59.105 47.619 0.00 0.00 0.00 2.57
2736 5802 1.066645 GGAAGAAAAGCCCAGCCATTG 60.067 52.381 0.00 0.00 0.00 2.82
2737 5803 1.269958 GGAAGAAAAGCCCAGCCATT 58.730 50.000 0.00 0.00 0.00 3.16
2738 5804 0.615827 GGGAAGAAAAGCCCAGCCAT 60.616 55.000 0.00 0.00 44.07 4.40
2739 5805 1.228862 GGGAAGAAAAGCCCAGCCA 60.229 57.895 0.00 0.00 44.07 4.75
2740 5806 1.984570 GGGGAAGAAAAGCCCAGCC 60.985 63.158 0.00 0.00 46.57 4.85
2741 5807 0.831711 TTGGGGAAGAAAAGCCCAGC 60.832 55.000 0.00 0.00 46.57 4.85
2742 5808 1.260544 CTTGGGGAAGAAAAGCCCAG 58.739 55.000 0.00 0.00 46.57 4.45
2743 5809 0.178935 CCTTGGGGAAGAAAAGCCCA 60.179 55.000 0.00 0.00 46.57 5.36
2744 5810 1.544825 GCCTTGGGGAAGAAAAGCCC 61.545 60.000 0.00 0.00 43.91 5.19
2745 5811 1.877576 CGCCTTGGGGAAGAAAAGCC 61.878 60.000 0.00 0.00 33.58 4.35
2746 5812 1.586541 CGCCTTGGGGAAGAAAAGC 59.413 57.895 0.00 0.00 33.58 3.51
2747 5813 0.251165 TCCGCCTTGGGGAAGAAAAG 60.251 55.000 5.23 0.00 41.69 2.27
2748 5814 1.847686 TCCGCCTTGGGGAAGAAAA 59.152 52.632 5.23 0.00 41.69 2.29
2749 5815 3.582662 TCCGCCTTGGGGAAGAAA 58.417 55.556 5.23 0.00 41.69 2.52
2754 5820 3.646715 CCACTTCCGCCTTGGGGA 61.647 66.667 5.23 0.00 42.93 4.81
2755 5821 4.740822 CCCACTTCCGCCTTGGGG 62.741 72.222 0.00 0.00 45.69 4.96
2757 5823 4.351054 AGCCCACTTCCGCCTTGG 62.351 66.667 0.00 0.00 40.09 3.61
2758 5824 3.058160 CAGCCCACTTCCGCCTTG 61.058 66.667 0.00 0.00 0.00 3.61
2759 5825 4.351054 CCAGCCCACTTCCGCCTT 62.351 66.667 0.00 0.00 0.00 4.35
2795 5861 4.785453 CTTGCCCAGACCCTCCGC 62.785 72.222 0.00 0.00 0.00 5.54
2796 5862 4.101448 CCTTGCCCAGACCCTCCG 62.101 72.222 0.00 0.00 0.00 4.63
2797 5863 4.432741 GCCTTGCCCAGACCCTCC 62.433 72.222 0.00 0.00 0.00 4.30
2798 5864 2.988839 ATGCCTTGCCCAGACCCTC 61.989 63.158 0.00 0.00 0.00 4.30
2799 5865 2.943265 ATGCCTTGCCCAGACCCT 60.943 61.111 0.00 0.00 0.00 4.34
2800 5866 2.757099 CATGCCTTGCCCAGACCC 60.757 66.667 0.00 0.00 0.00 4.46
2801 5867 2.757099 CCATGCCTTGCCCAGACC 60.757 66.667 0.00 0.00 0.00 3.85
2802 5868 2.757099 CCCATGCCTTGCCCAGAC 60.757 66.667 0.00 0.00 0.00 3.51
2803 5869 4.764771 GCCCATGCCTTGCCCAGA 62.765 66.667 0.00 0.00 0.00 3.86
2815 5881 4.634703 TTCACACCGCACGCCCAT 62.635 61.111 0.00 0.00 0.00 4.00
2820 5886 3.414700 GAGCCTTCACACCGCACG 61.415 66.667 0.00 0.00 0.00 5.34
2821 5887 2.031163 AGAGCCTTCACACCGCAC 59.969 61.111 0.00 0.00 0.00 5.34
2822 5888 2.031012 CAGAGCCTTCACACCGCA 59.969 61.111 0.00 0.00 0.00 5.69
2823 5889 2.743928 CCAGAGCCTTCACACCGC 60.744 66.667 0.00 0.00 0.00 5.68
2824 5890 2.046892 CCCAGAGCCTTCACACCG 60.047 66.667 0.00 0.00 0.00 4.94
2825 5891 2.360475 GCCCAGAGCCTTCACACC 60.360 66.667 0.00 0.00 34.35 4.16
2826 5892 2.743928 CGCCCAGAGCCTTCACAC 60.744 66.667 0.00 0.00 38.78 3.82
2827 5893 4.020617 CCGCCCAGAGCCTTCACA 62.021 66.667 0.00 0.00 38.78 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.