Multiple sequence alignment - TraesCS3B01G076900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G076900 chr3B 100.000 3929 0 0 1 3929 47455761 47451833 0.000000e+00 7256.0
1 TraesCS3B01G076900 chr3B 86.395 1867 167 44 1760 3561 46282218 46284062 0.000000e+00 1960.0
2 TraesCS3B01G076900 chr3B 94.025 318 16 3 947 1262 50355767 50356083 2.750000e-131 479.0
3 TraesCS3B01G076900 chr3B 91.205 307 18 8 651 955 50350152 50350451 3.650000e-110 409.0
4 TraesCS3B01G076900 chr3B 89.286 196 20 1 259 454 50349834 50350028 1.090000e-60 244.0
5 TraesCS3B01G076900 chr3D 94.149 3230 151 24 720 3929 28495957 28492746 0.000000e+00 4883.0
6 TraesCS3B01G076900 chr3D 81.976 2874 364 79 788 3561 27655758 27658577 0.000000e+00 2296.0
7 TraesCS3B01G076900 chr3D 90.038 1315 112 7 1154 2461 27760363 27761665 0.000000e+00 1685.0
8 TraesCS3B01G076900 chr3D 89.130 1380 113 18 1760 3125 28129977 28128621 0.000000e+00 1683.0
9 TraesCS3B01G076900 chr3D 90.622 1237 90 13 1760 2984 28134804 28133582 0.000000e+00 1618.0
10 TraesCS3B01G076900 chr3D 83.836 464 45 17 10 456 28496666 28496216 7.850000e-112 414.0
11 TraesCS3B01G076900 chr3D 73.782 698 144 31 843 1517 27651487 27652168 5.070000e-59 239.0
12 TraesCS3B01G076900 chr3D 73.286 700 144 33 842 1517 28135724 28135044 2.380000e-52 217.0
13 TraesCS3B01G076900 chr3D 97.222 36 0 1 651 685 28495986 28495951 4.240000e-05 60.2
14 TraesCS3B01G076900 chr3A 93.605 2924 144 26 651 3561 38254397 38251504 0.000000e+00 4324.0
15 TraesCS3B01G076900 chr3A 88.682 1661 140 17 1781 3421 38046650 38045018 0.000000e+00 1982.0
16 TraesCS3B01G076900 chr3A 91.164 1392 93 12 1760 3138 38021525 38020151 0.000000e+00 1862.0
17 TraesCS3B01G076900 chr3A 90.023 1283 104 12 1764 3034 38035726 38034456 0.000000e+00 1639.0
18 TraesCS3B01G076900 chr3A 82.877 1828 276 21 1037 2844 10531986 10530176 0.000000e+00 1607.0
19 TraesCS3B01G076900 chr3A 92.285 1011 70 7 2545 3552 38236382 38235377 0.000000e+00 1428.0
20 TraesCS3B01G076900 chr3A 81.303 476 46 23 3123 3561 38031510 38031041 2.910000e-91 346.0
21 TraesCS3B01G076900 chr3A 74.596 681 156 15 1043 1716 38036555 38035885 2.310000e-72 283.0
22 TraesCS3B01G076900 chr3A 73.770 488 109 15 1039 1517 38047388 38046911 1.450000e-39 174.0
23 TraesCS3B01G076900 chr3A 78.733 221 21 13 653 869 38255145 38254947 1.480000e-24 124.0
24 TraesCS3B01G076900 chr3A 89.899 99 7 2 779 875 38260875 38260778 1.480000e-24 124.0
25 TraesCS3B01G076900 chr3A 83.898 118 10 3 3123 3232 38020143 38020027 1.930000e-18 104.0
26 TraesCS3B01G076900 chr2D 76.054 735 150 21 1000 1715 533856649 533857376 3.730000e-95 359.0
27 TraesCS3B01G076900 chr2B 79.158 475 85 11 1094 1560 634171883 634172351 2.280000e-82 316.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G076900 chr3B 47451833 47455761 3928 True 7256.000000 7256 100.000000 1 3929 1 chr3B.!!$R1 3928
1 TraesCS3B01G076900 chr3B 46282218 46284062 1844 False 1960.000000 1960 86.395000 1760 3561 1 chr3B.!!$F1 1801
2 TraesCS3B01G076900 chr3B 50349834 50350451 617 False 326.500000 409 90.245500 259 955 2 chr3B.!!$F3 696
3 TraesCS3B01G076900 chr3D 28492746 28496666 3920 True 1785.733333 4883 91.735667 10 3929 3 chr3D.!!$R2 3919
4 TraesCS3B01G076900 chr3D 27760363 27761665 1302 False 1685.000000 1685 90.038000 1154 2461 1 chr3D.!!$F1 1307
5 TraesCS3B01G076900 chr3D 27651487 27658577 7090 False 1267.500000 2296 77.879000 788 3561 2 chr3D.!!$F2 2773
6 TraesCS3B01G076900 chr3D 28128621 28135724 7103 True 1172.666667 1683 84.346000 842 3125 3 chr3D.!!$R1 2283
7 TraesCS3B01G076900 chr3A 38251504 38255145 3641 True 2224.000000 4324 86.169000 651 3561 2 chr3A.!!$R7 2910
8 TraesCS3B01G076900 chr3A 10530176 10531986 1810 True 1607.000000 1607 82.877000 1037 2844 1 chr3A.!!$R1 1807
9 TraesCS3B01G076900 chr3A 38235377 38236382 1005 True 1428.000000 1428 92.285000 2545 3552 1 chr3A.!!$R2 1007
10 TraesCS3B01G076900 chr3A 38045018 38047388 2370 True 1078.000000 1982 81.226000 1039 3421 2 chr3A.!!$R6 2382
11 TraesCS3B01G076900 chr3A 38020027 38021525 1498 True 983.000000 1862 87.531000 1760 3232 2 chr3A.!!$R4 1472
12 TraesCS3B01G076900 chr3A 38031041 38036555 5514 True 756.000000 1639 81.974000 1043 3561 3 chr3A.!!$R5 2518
13 TraesCS3B01G076900 chr2D 533856649 533857376 727 False 359.000000 359 76.054000 1000 1715 1 chr2D.!!$F1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 537 0.249155 GTCCACGACGGTGTCAAGAA 60.249 55.000 0.0 0.0 42.8 2.52 F
973 4473 0.319900 TTGCAACTCAGACTCCGCTC 60.320 55.000 0.0 0.0 0.0 5.03 F
981 4481 1.205655 TCAGACTCCGCTCCAAATCAG 59.794 52.381 0.0 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2263 5925 0.247460 CGTGTGCTCCAATCCAGAGA 59.753 55.000 0.00 0.0 32.86 3.10 R
2583 6245 1.202891 TCTGACTGGGAAGTGTCGAGA 60.203 52.381 0.00 0.0 36.10 4.04 R
3114 6779 3.118592 AGGTGGAGCTCGAAGGAATAAAG 60.119 47.826 7.83 0.0 0.00 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.772716 ACACTCAACATAAGTCAAAACCTCAT 59.227 34.615 0.00 0.00 0.00 2.90
41 42 7.936847 ACACTCAACATAAGTCAAAACCTCATA 59.063 33.333 0.00 0.00 0.00 2.15
50 51 2.757868 TCAAAACCTCATATTTGGCGGG 59.242 45.455 0.00 0.00 37.19 6.13
63 64 1.247419 TGGCGGGGCAAAATGTACAG 61.247 55.000 0.33 0.00 0.00 2.74
70 71 4.388469 CGGGGCAAAATGTACAGAAAAATG 59.612 41.667 0.33 0.00 0.00 2.32
71 72 4.154015 GGGGCAAAATGTACAGAAAAATGC 59.846 41.667 0.33 6.07 0.00 3.56
82 87 5.405935 ACAGAAAAATGCCAGAATTACCC 57.594 39.130 0.00 0.00 0.00 3.69
93 98 3.640029 CCAGAATTACCCTCCGCTAGTTA 59.360 47.826 0.00 0.00 0.00 2.24
156 161 0.601046 CAGCGAGCAAACCTGACAGA 60.601 55.000 3.32 0.00 0.00 3.41
160 165 1.528586 CGAGCAAACCTGACAGAGTTG 59.471 52.381 3.32 8.67 0.00 3.16
193 198 4.101585 TGAGACAAGGCTCCATATGGTTAG 59.898 45.833 21.28 13.28 33.95 2.34
194 199 4.298626 AGACAAGGCTCCATATGGTTAGA 58.701 43.478 21.28 0.98 36.34 2.10
195 200 4.721776 AGACAAGGCTCCATATGGTTAGAA 59.278 41.667 21.28 0.58 36.34 2.10
196 201 5.370880 AGACAAGGCTCCATATGGTTAGAAT 59.629 40.000 21.28 3.47 36.34 2.40
200 205 2.744202 GCTCCATATGGTTAGAATGCCG 59.256 50.000 21.28 0.66 36.34 5.69
217 222 4.713946 GGTCAACGAGGCATCCAA 57.286 55.556 0.00 0.00 0.00 3.53
223 228 0.250901 AACGAGGCATCCAACTGCTT 60.251 50.000 0.00 0.00 41.95 3.91
250 255 4.577677 TGCCCACCGCAGCTTCAA 62.578 61.111 0.00 0.00 44.64 2.69
252 257 3.056313 GCCCACCGCAGCTTCAATC 62.056 63.158 0.00 0.00 37.47 2.67
254 259 1.651240 CCCACCGCAGCTTCAATCAG 61.651 60.000 0.00 0.00 0.00 2.90
325 344 1.001487 CTGTCGCAACAAAGCATGGAA 60.001 47.619 0.00 0.00 34.24 3.53
333 352 4.677779 GCAACAAAGCATGGAACGGATTAT 60.678 41.667 0.00 0.00 0.00 1.28
445 465 6.910536 AAAACGAAAGCCTACTATCTGATG 57.089 37.500 0.00 0.00 0.00 3.07
447 467 3.961408 ACGAAAGCCTACTATCTGATGGT 59.039 43.478 11.50 11.50 0.00 3.55
448 468 4.202161 ACGAAAGCCTACTATCTGATGGTG 60.202 45.833 15.88 6.73 0.00 4.17
450 470 5.451937 CGAAAGCCTACTATCTGATGGTGAA 60.452 44.000 15.88 0.00 0.00 3.18
453 473 6.506538 AGCCTACTATCTGATGGTGAAATT 57.493 37.500 15.88 0.00 0.00 1.82
454 474 7.618019 AGCCTACTATCTGATGGTGAAATTA 57.382 36.000 15.88 0.00 0.00 1.40
456 476 7.071196 AGCCTACTATCTGATGGTGAAATTACA 59.929 37.037 15.88 0.00 0.00 2.41
457 477 7.386299 GCCTACTATCTGATGGTGAAATTACAG 59.614 40.741 15.88 3.66 0.00 2.74
459 479 9.689976 CTACTATCTGATGGTGAAATTACAGAG 57.310 37.037 15.88 0.00 37.70 3.35
460 480 7.504403 ACTATCTGATGGTGAAATTACAGAGG 58.496 38.462 5.81 0.00 37.70 3.69
461 481 5.102953 TCTGATGGTGAAATTACAGAGGG 57.897 43.478 0.00 0.00 32.04 4.30
464 484 1.349688 TGGTGAAATTACAGAGGGCGT 59.650 47.619 0.00 0.00 0.00 5.68
465 485 2.568062 TGGTGAAATTACAGAGGGCGTA 59.432 45.455 0.00 0.00 0.00 4.42
466 486 3.199071 TGGTGAAATTACAGAGGGCGTAT 59.801 43.478 0.00 0.00 0.00 3.06
467 487 4.196971 GGTGAAATTACAGAGGGCGTATT 58.803 43.478 0.00 0.00 0.00 1.89
492 512 9.900710 TTGCATGTGTTTATTATAAAGACGTTT 57.099 25.926 14.44 3.97 0.00 3.60
493 513 9.900710 TGCATGTGTTTATTATAAAGACGTTTT 57.099 25.926 14.44 0.00 0.00 2.43
504 524 6.701432 ATAAAGACGTTTTTAGAGTCCACG 57.299 37.500 15.45 0.00 35.65 4.94
506 526 3.636381 AGACGTTTTTAGAGTCCACGAC 58.364 45.455 0.00 0.00 35.65 4.34
507 527 2.388121 ACGTTTTTAGAGTCCACGACG 58.612 47.619 0.00 0.00 37.67 5.12
508 528 1.717645 CGTTTTTAGAGTCCACGACGG 59.282 52.381 0.00 0.00 37.67 4.79
510 530 2.427232 TTTTAGAGTCCACGACGGTG 57.573 50.000 0.00 0.00 43.99 4.94
511 531 1.321474 TTTAGAGTCCACGACGGTGT 58.679 50.000 0.00 0.00 42.80 4.16
515 535 0.663568 GAGTCCACGACGGTGTCAAG 60.664 60.000 0.00 0.00 42.80 3.02
517 537 0.249155 GTCCACGACGGTGTCAAGAA 60.249 55.000 0.00 0.00 42.80 2.52
520 540 1.871039 CCACGACGGTGTCAAGAAATT 59.129 47.619 0.00 0.00 42.80 1.82
522 542 3.120786 CCACGACGGTGTCAAGAAATTAC 60.121 47.826 0.00 0.00 42.80 1.89
523 543 3.491639 CACGACGGTGTCAAGAAATTACA 59.508 43.478 0.00 0.00 39.38 2.41
524 544 3.739300 ACGACGGTGTCAAGAAATTACAG 59.261 43.478 0.00 0.00 32.09 2.74
525 545 3.985279 CGACGGTGTCAAGAAATTACAGA 59.015 43.478 0.00 0.00 32.09 3.41
526 546 4.090066 CGACGGTGTCAAGAAATTACAGAG 59.910 45.833 0.00 0.00 32.09 3.35
528 548 3.684788 CGGTGTCAAGAAATTACAGAGGG 59.315 47.826 0.00 0.00 0.00 4.30
531 551 5.513267 GGTGTCAAGAAATTACAGAGGGAGT 60.513 44.000 0.00 0.00 0.00 3.85
536 556 9.315525 GTCAAGAAATTACAGAGGGAGTATTAC 57.684 37.037 0.00 0.00 0.00 1.89
538 558 9.838339 CAAGAAATTACAGAGGGAGTATTACAT 57.162 33.333 0.00 0.00 0.00 2.29
540 560 8.432805 AGAAATTACAGAGGGAGTATTACATGG 58.567 37.037 0.00 0.00 0.00 3.66
541 561 7.691993 AATTACAGAGGGAGTATTACATGGT 57.308 36.000 0.00 0.00 0.00 3.55
542 562 6.479972 TTACAGAGGGAGTATTACATGGTG 57.520 41.667 0.00 0.00 0.00 4.17
543 563 4.362677 ACAGAGGGAGTATTACATGGTGT 58.637 43.478 0.00 0.00 0.00 4.16
544 564 4.783227 ACAGAGGGAGTATTACATGGTGTT 59.217 41.667 0.00 0.00 0.00 3.32
548 568 6.012858 AGAGGGAGTATTACATGGTGTTTTCA 60.013 38.462 0.00 0.00 0.00 2.69
563 583 6.774354 GTGTTTTCACCATAAGACGTTCTA 57.226 37.500 0.00 0.00 44.31 2.10
568 588 5.006153 TCACCATAAGACGTTCTACATGG 57.994 43.478 17.48 17.48 41.44 3.66
569 589 4.464951 TCACCATAAGACGTTCTACATGGT 59.535 41.667 18.25 18.25 45.65 3.55
570 590 4.755411 ACCATAAGACGTTCTACATGGTG 58.245 43.478 20.71 0.00 44.31 4.17
571 591 4.222145 ACCATAAGACGTTCTACATGGTGT 59.778 41.667 20.71 8.29 44.31 4.16
572 592 5.175859 CCATAAGACGTTCTACATGGTGTT 58.824 41.667 0.00 0.00 35.81 3.32
573 593 5.642063 CCATAAGACGTTCTACATGGTGTTT 59.358 40.000 0.00 0.00 35.81 2.83
574 594 6.148811 CCATAAGACGTTCTACATGGTGTTTT 59.851 38.462 0.00 0.00 35.81 2.43
575 595 5.668558 AAGACGTTCTACATGGTGTTTTC 57.331 39.130 0.00 0.00 0.00 2.29
590 610 5.035784 GTGTTTTCACCATCTGAGCTAAC 57.964 43.478 0.00 0.00 44.31 2.34
593 613 3.334583 TTCACCATCTGAGCTAACACC 57.665 47.619 0.00 0.00 0.00 4.16
594 614 2.256306 TCACCATCTGAGCTAACACCA 58.744 47.619 0.00 0.00 0.00 4.17
598 618 3.774766 ACCATCTGAGCTAACACCATGTA 59.225 43.478 0.00 0.00 0.00 2.29
603 623 6.538945 TCTGAGCTAACACCATGTAATGTA 57.461 37.500 0.00 0.00 44.81 2.29
604 624 6.941857 TCTGAGCTAACACCATGTAATGTAA 58.058 36.000 0.00 0.00 44.81 2.41
605 625 7.564793 TCTGAGCTAACACCATGTAATGTAAT 58.435 34.615 0.00 0.00 44.81 1.89
607 627 8.657074 TGAGCTAACACCATGTAATGTAATAC 57.343 34.615 0.00 0.00 44.81 1.89
612 632 9.778741 CTAACACCATGTAATGTAATACTCCAT 57.221 33.333 0.00 0.00 44.81 3.41
614 634 8.034313 ACACCATGTAATGTAATACTCCATCT 57.966 34.615 0.00 0.00 44.81 2.90
615 635 7.933577 ACACCATGTAATGTAATACTCCATCTG 59.066 37.037 0.00 0.00 44.81 2.90
620 640 8.800370 TGTAATGTAATACTCCATCTGCAAAA 57.200 30.769 0.00 0.00 0.00 2.44
621 641 9.237187 TGTAATGTAATACTCCATCTGCAAAAA 57.763 29.630 0.00 0.00 0.00 1.94
646 666 7.563888 AAATTATAGGACGTTTTTAGAGCCC 57.436 36.000 0.00 0.00 0.00 5.19
647 667 5.680594 TTATAGGACGTTTTTAGAGCCCA 57.319 39.130 0.00 0.00 0.00 5.36
652 672 1.003233 ACGTTTTTAGAGCCCAGGAGG 59.997 52.381 0.00 0.00 39.47 4.30
653 673 1.003233 CGTTTTTAGAGCCCAGGAGGT 59.997 52.381 0.00 0.00 38.26 3.85
654 674 2.235402 CGTTTTTAGAGCCCAGGAGGTA 59.765 50.000 0.00 0.00 38.26 3.08
706 924 2.264813 CATTCCTTGCAGCCAAAATCG 58.735 47.619 0.00 0.00 0.00 3.34
773 992 4.937201 TCTTGGAAGAGCGCAGATATAA 57.063 40.909 11.47 0.00 0.00 0.98
774 993 4.876125 TCTTGGAAGAGCGCAGATATAAG 58.124 43.478 11.47 7.61 0.00 1.73
775 994 4.342378 TCTTGGAAGAGCGCAGATATAAGT 59.658 41.667 11.47 0.00 0.00 2.24
777 996 5.122512 TGGAAGAGCGCAGATATAAGTAC 57.877 43.478 11.47 0.00 0.00 2.73
778 997 4.583073 TGGAAGAGCGCAGATATAAGTACA 59.417 41.667 11.47 0.00 0.00 2.90
779 998 5.157781 GGAAGAGCGCAGATATAAGTACAG 58.842 45.833 11.47 0.00 0.00 2.74
799 4284 5.659463 ACAGTAATTTGCAAGCAAACAAGA 58.341 33.333 21.04 5.57 46.80 3.02
944 4444 1.553690 TTAGCTGTCACAGGAGCCCC 61.554 60.000 7.00 0.00 35.69 5.80
969 4469 3.615849 CAACTTTGCAACTCAGACTCC 57.384 47.619 0.00 0.00 0.00 3.85
971 4471 0.514691 CTTTGCAACTCAGACTCCGC 59.485 55.000 0.00 0.00 0.00 5.54
973 4473 0.319900 TTGCAACTCAGACTCCGCTC 60.320 55.000 0.00 0.00 0.00 5.03
981 4481 1.205655 TCAGACTCCGCTCCAAATCAG 59.794 52.381 0.00 0.00 0.00 2.90
992 4494 3.446570 AAATCAGCGGCTGCAGGC 61.447 61.111 29.31 29.31 46.23 4.85
1125 4640 1.427072 GCCCCTACACCATATGGCCT 61.427 60.000 22.18 9.24 39.32 5.19
1810 5457 5.711976 CCAAAATCCTCCACTGTAAGAACAT 59.288 40.000 0.00 0.00 37.43 2.71
1986 5645 1.610522 CAACAGCTAAAGGCAGCAACT 59.389 47.619 0.00 0.00 44.35 3.16
2232 5891 1.341383 CCCAAAGGATCCTTGGACAGG 60.341 57.143 29.84 23.52 38.89 4.00
2263 5925 2.254546 TCGACATGACAAGGTTGCTT 57.745 45.000 0.00 0.00 0.00 3.91
2442 6104 5.422012 TGGACTATGCAAACTCATAGACAGA 59.578 40.000 15.27 0.97 45.39 3.41
2565 6227 2.159382 GGTGTCGTGGTCATGGAAATT 58.841 47.619 0.00 0.00 0.00 1.82
2583 6245 5.335976 GGAAATTGTCAGCGGAAGAAAGAAT 60.336 40.000 0.00 0.00 0.00 2.40
3292 9861 7.451732 TGTTAGTTACCACAAGTGCCTTTATA 58.548 34.615 0.00 0.00 0.00 0.98
3344 9921 6.950545 TGACATTAGGTACAGTTTGTTTTCG 58.049 36.000 0.00 0.00 0.00 3.46
3368 9945 3.493767 AAAAGGAGAAAAGGTCGCTCT 57.506 42.857 0.00 0.00 0.00 4.09
3502 10131 5.413833 ACTGTGAGAGGATTTTGCTACATTG 59.586 40.000 0.00 0.00 0.00 2.82
3534 10164 7.880059 AAGAATTCAGATTTTTAGCTTGCAC 57.120 32.000 8.44 0.00 0.00 4.57
3587 10217 1.679311 CCTGCCTACCTCACAAGCA 59.321 57.895 0.00 0.00 0.00 3.91
3619 10249 1.615392 GCTGGTGAGCTTTTTGTGGAT 59.385 47.619 0.00 0.00 42.52 3.41
3655 10285 1.001406 AGGGAAACAGAGCAAGAGACG 59.999 52.381 0.00 0.00 0.00 4.18
3664 10294 0.909610 AGCAAGAGACGGGGGATTCA 60.910 55.000 0.00 0.00 0.00 2.57
3683 10313 8.576442 GGGATTCAGTTTCTGTTCATTTTCTAA 58.424 33.333 0.00 0.00 32.61 2.10
3719 10349 3.110293 TGCTCAGCCCTTAAGTACCTA 57.890 47.619 0.00 0.00 0.00 3.08
3721 10351 2.224090 GCTCAGCCCTTAAGTACCTAGC 60.224 54.545 0.97 1.59 0.00 3.42
3732 10362 0.386113 GTACCTAGCCTCCTCTTGCG 59.614 60.000 0.00 0.00 0.00 4.85
3763 10393 0.036388 ACGCACCCCTACACAATCTG 60.036 55.000 0.00 0.00 0.00 2.90
3768 10398 3.689649 GCACCCCTACACAATCTGTAAAG 59.310 47.826 0.00 0.00 34.80 1.85
3776 10406 7.923344 CCCTACACAATCTGTAAAGAGACATAG 59.077 40.741 0.00 0.00 34.80 2.23
3777 10407 7.436673 CCTACACAATCTGTAAAGAGACATAGC 59.563 40.741 0.00 0.00 34.80 2.97
3778 10408 6.109359 ACACAATCTGTAAAGAGACATAGCC 58.891 40.000 0.00 0.00 0.00 3.93
3806 10438 3.884226 TGGCCAACACACTAACACA 57.116 47.368 0.61 0.00 0.00 3.72
3822 10454 5.705441 ACTAACACATTCAGGTTACATGGTG 59.295 40.000 0.00 0.49 0.00 4.17
3829 10461 1.541147 CAGGTTACATGGTGGCAACTG 59.459 52.381 3.27 2.04 37.61 3.16
3920 10552 7.642669 AGATTTCTTCAGTAACAACACACATG 58.357 34.615 0.00 0.00 0.00 3.21
3921 10553 5.749596 TTCTTCAGTAACAACACACATGG 57.250 39.130 0.00 0.00 0.00 3.66
3922 10554 4.776349 TCTTCAGTAACAACACACATGGT 58.224 39.130 0.00 0.00 0.00 3.55
3923 10555 5.919755 TCTTCAGTAACAACACACATGGTA 58.080 37.500 0.00 0.00 0.00 3.25
3924 10556 6.530120 TCTTCAGTAACAACACACATGGTAT 58.470 36.000 0.00 0.00 0.00 2.73
3925 10557 6.649141 TCTTCAGTAACAACACACATGGTATC 59.351 38.462 0.00 0.00 0.00 2.24
3926 10558 5.859495 TCAGTAACAACACACATGGTATCA 58.141 37.500 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.443681 CCGCCAAATATGAGGTTTTGACT 59.556 43.478 0.00 0.00 35.34 3.41
28 29 3.428862 CCCGCCAAATATGAGGTTTTGAC 60.429 47.826 0.00 0.00 35.34 3.18
31 32 2.107366 CCCCGCCAAATATGAGGTTTT 58.893 47.619 0.00 0.00 0.00 2.43
40 41 1.270907 ACATTTTGCCCCGCCAAATA 58.729 45.000 0.00 0.00 33.23 1.40
41 42 1.066502 GTACATTTTGCCCCGCCAAAT 60.067 47.619 0.00 0.00 34.88 2.32
50 51 4.754114 TGGCATTTTTCTGTACATTTTGCC 59.246 37.500 18.11 18.11 45.63 4.52
63 64 4.440112 CGGAGGGTAATTCTGGCATTTTTC 60.440 45.833 0.00 0.00 0.00 2.29
70 71 0.756903 TAGCGGAGGGTAATTCTGGC 59.243 55.000 0.00 0.00 0.00 4.85
71 72 2.040178 ACTAGCGGAGGGTAATTCTGG 58.960 52.381 0.00 0.00 0.00 3.86
82 87 6.418226 GTGAACATCTGTATTAACTAGCGGAG 59.582 42.308 0.00 0.00 0.00 4.63
140 145 1.528586 CAACTCTGTCAGGTTTGCTCG 59.471 52.381 0.00 0.00 0.00 5.03
156 161 4.442706 CTTGTCTCACTAACCACACAACT 58.557 43.478 0.00 0.00 0.00 3.16
160 165 2.143925 GCCTTGTCTCACTAACCACAC 58.856 52.381 0.00 0.00 0.00 3.82
193 198 2.750888 GCCTCGTTGACCGGCATTC 61.751 63.158 0.00 0.00 43.25 2.67
194 199 2.746277 GCCTCGTTGACCGGCATT 60.746 61.111 0.00 0.00 43.25 3.56
200 205 0.321653 AGTTGGATGCCTCGTTGACC 60.322 55.000 0.00 0.00 0.00 4.02
250 255 2.803030 ACCTGCTGATTGAAGCTGAT 57.197 45.000 4.84 0.00 42.84 2.90
252 257 2.983229 AGTACCTGCTGATTGAAGCTG 58.017 47.619 0.00 0.00 43.90 4.24
254 259 4.773323 AAAAGTACCTGCTGATTGAAGC 57.227 40.909 0.00 0.00 43.82 3.86
264 280 4.040445 TCACTTTGCAAAAAGTACCTGC 57.960 40.909 13.84 0.00 40.74 4.85
287 303 4.365723 GACAGTAACGGTCAAGAGTGAAA 58.634 43.478 0.00 0.00 34.87 2.69
288 304 3.549423 CGACAGTAACGGTCAAGAGTGAA 60.549 47.826 3.02 0.00 34.87 3.18
325 344 5.109903 CGTCTTTCTTCCTTCATAATCCGT 58.890 41.667 0.00 0.00 0.00 4.69
333 352 2.613026 TGCACGTCTTTCTTCCTTCA 57.387 45.000 0.00 0.00 0.00 3.02
425 445 3.961408 ACCATCAGATAGTAGGCTTTCGT 59.039 43.478 0.00 0.00 0.00 3.85
428 448 5.957771 TTCACCATCAGATAGTAGGCTTT 57.042 39.130 0.00 0.00 0.00 3.51
429 449 5.957771 TTTCACCATCAGATAGTAGGCTT 57.042 39.130 0.00 0.00 0.00 4.35
430 450 6.506538 AATTTCACCATCAGATAGTAGGCT 57.493 37.500 0.00 0.00 0.00 4.58
431 451 7.217200 TGTAATTTCACCATCAGATAGTAGGC 58.783 38.462 0.00 0.00 0.00 3.93
436 456 6.933521 CCCTCTGTAATTTCACCATCAGATAG 59.066 42.308 0.00 0.00 32.73 2.08
437 457 6.688922 GCCCTCTGTAATTTCACCATCAGATA 60.689 42.308 0.00 0.00 32.73 1.98
438 458 5.688807 CCCTCTGTAATTTCACCATCAGAT 58.311 41.667 0.00 0.00 32.73 2.90
439 459 4.626287 GCCCTCTGTAATTTCACCATCAGA 60.626 45.833 0.00 0.00 0.00 3.27
440 460 3.629398 GCCCTCTGTAATTTCACCATCAG 59.371 47.826 0.00 0.00 0.00 2.90
442 462 2.614057 CGCCCTCTGTAATTTCACCATC 59.386 50.000 0.00 0.00 0.00 3.51
445 465 2.109425 ACGCCCTCTGTAATTTCACC 57.891 50.000 0.00 0.00 0.00 4.02
447 467 3.625764 GCAATACGCCCTCTGTAATTTCA 59.374 43.478 0.00 0.00 32.94 2.69
448 468 3.625764 TGCAATACGCCCTCTGTAATTTC 59.374 43.478 0.00 0.00 41.33 2.17
450 470 3.275617 TGCAATACGCCCTCTGTAATT 57.724 42.857 0.00 0.00 41.33 1.40
453 473 1.484653 ACATGCAATACGCCCTCTGTA 59.515 47.619 0.00 0.00 41.33 2.74
454 474 0.253044 ACATGCAATACGCCCTCTGT 59.747 50.000 0.00 0.00 41.33 3.41
456 476 0.253044 ACACATGCAATACGCCCTCT 59.747 50.000 0.00 0.00 41.33 3.69
457 477 1.094785 AACACATGCAATACGCCCTC 58.905 50.000 0.00 0.00 41.33 4.30
459 479 3.708563 ATAAACACATGCAATACGCCC 57.291 42.857 0.00 0.00 41.33 6.13
460 480 8.789881 TTTATAATAAACACATGCAATACGCC 57.210 30.769 0.00 0.00 41.33 5.68
461 481 9.658475 TCTTTATAATAAACACATGCAATACGC 57.342 29.630 0.00 0.00 42.89 4.42
466 486 9.900710 AAACGTCTTTATAATAAACACATGCAA 57.099 25.926 0.00 0.00 0.00 4.08
467 487 9.900710 AAAACGTCTTTATAATAAACACATGCA 57.099 25.926 0.00 0.00 0.00 3.96
478 498 8.866956 CGTGGACTCTAAAAACGTCTTTATAAT 58.133 33.333 0.00 0.00 0.00 1.28
479 499 8.081633 TCGTGGACTCTAAAAACGTCTTTATAA 58.918 33.333 0.00 0.00 35.79 0.98
481 501 6.364435 GTCGTGGACTCTAAAAACGTCTTTAT 59.636 38.462 0.00 0.00 35.79 1.40
483 503 4.505556 GTCGTGGACTCTAAAAACGTCTTT 59.494 41.667 0.00 0.00 35.79 2.52
484 504 4.047142 GTCGTGGACTCTAAAAACGTCTT 58.953 43.478 0.00 0.00 35.79 3.01
488 508 1.717645 CCGTCGTGGACTCTAAAAACG 59.282 52.381 0.00 0.00 42.00 3.60
490 510 2.101249 ACACCGTCGTGGACTCTAAAAA 59.899 45.455 3.47 0.00 44.86 1.94
492 512 1.267806 GACACCGTCGTGGACTCTAAA 59.732 52.381 3.47 0.00 44.86 1.85
493 513 0.877071 GACACCGTCGTGGACTCTAA 59.123 55.000 3.47 0.00 44.86 2.10
494 514 0.250424 TGACACCGTCGTGGACTCTA 60.250 55.000 3.47 0.00 44.86 2.43
495 515 1.105167 TTGACACCGTCGTGGACTCT 61.105 55.000 3.47 0.00 44.86 3.24
496 516 0.663568 CTTGACACCGTCGTGGACTC 60.664 60.000 3.47 0.00 44.86 3.36
500 520 1.508632 ATTTCTTGACACCGTCGTGG 58.491 50.000 0.00 0.00 44.86 4.94
501 521 3.491639 TGTAATTTCTTGACACCGTCGTG 59.508 43.478 0.00 0.00 46.11 4.35
502 522 3.719924 TGTAATTTCTTGACACCGTCGT 58.280 40.909 0.00 0.00 34.95 4.34
503 523 3.985279 TCTGTAATTTCTTGACACCGTCG 59.015 43.478 0.00 0.00 34.95 5.12
504 524 4.389077 CCTCTGTAATTTCTTGACACCGTC 59.611 45.833 0.00 0.00 0.00 4.79
506 526 3.684788 CCCTCTGTAATTTCTTGACACCG 59.315 47.826 0.00 0.00 0.00 4.94
507 527 4.906618 TCCCTCTGTAATTTCTTGACACC 58.093 43.478 0.00 0.00 0.00 4.16
508 528 5.552178 ACTCCCTCTGTAATTTCTTGACAC 58.448 41.667 0.00 0.00 0.00 3.67
510 530 9.315525 GTAATACTCCCTCTGTAATTTCTTGAC 57.684 37.037 0.00 0.00 0.00 3.18
511 531 9.042450 TGTAATACTCCCTCTGTAATTTCTTGA 57.958 33.333 0.00 0.00 0.00 3.02
515 535 8.211629 ACCATGTAATACTCCCTCTGTAATTTC 58.788 37.037 0.00 0.00 0.00 2.17
517 537 7.127339 ACACCATGTAATACTCCCTCTGTAATT 59.873 37.037 0.00 0.00 0.00 1.40
520 540 5.525484 ACACCATGTAATACTCCCTCTGTA 58.475 41.667 0.00 0.00 0.00 2.74
522 542 5.359194 AACACCATGTAATACTCCCTCTG 57.641 43.478 0.00 0.00 0.00 3.35
523 543 6.012858 TGAAAACACCATGTAATACTCCCTCT 60.013 38.462 0.00 0.00 0.00 3.69
524 544 6.093633 GTGAAAACACCATGTAATACTCCCTC 59.906 42.308 0.00 0.00 0.00 4.30
525 545 5.944007 GTGAAAACACCATGTAATACTCCCT 59.056 40.000 0.00 0.00 0.00 4.20
526 546 5.124936 GGTGAAAACACCATGTAATACTCCC 59.875 44.000 13.53 0.00 44.39 4.30
540 560 5.668558 AGAACGTCTTATGGTGAAAACAC 57.331 39.130 0.00 0.00 0.00 3.32
541 561 6.282167 TGTAGAACGTCTTATGGTGAAAACA 58.718 36.000 0.00 0.00 0.00 2.83
542 562 6.774354 TGTAGAACGTCTTATGGTGAAAAC 57.226 37.500 0.00 0.00 0.00 2.43
543 563 6.370442 CCATGTAGAACGTCTTATGGTGAAAA 59.630 38.462 15.12 0.00 36.29 2.29
544 564 5.872617 CCATGTAGAACGTCTTATGGTGAAA 59.127 40.000 15.12 0.00 36.29 2.69
548 568 4.222145 ACACCATGTAGAACGTCTTATGGT 59.778 41.667 19.14 19.14 45.68 3.55
549 569 4.755411 ACACCATGTAGAACGTCTTATGG 58.245 43.478 18.38 18.38 41.66 2.74
553 573 5.007332 GTGAAAACACCATGTAGAACGTCTT 59.993 40.000 0.00 0.00 0.00 3.01
554 574 4.510340 GTGAAAACACCATGTAGAACGTCT 59.490 41.667 0.00 0.00 0.00 4.18
555 575 4.319261 GGTGAAAACACCATGTAGAACGTC 60.319 45.833 13.53 0.00 44.39 4.34
556 576 3.562557 GGTGAAAACACCATGTAGAACGT 59.437 43.478 13.53 0.00 44.39 3.99
568 588 4.515191 TGTTAGCTCAGATGGTGAAAACAC 59.485 41.667 0.00 0.00 33.60 3.32
569 589 4.515191 GTGTTAGCTCAGATGGTGAAAACA 59.485 41.667 0.00 0.00 33.60 2.83
570 590 4.083271 GGTGTTAGCTCAGATGGTGAAAAC 60.083 45.833 0.00 0.00 33.60 2.43
571 591 4.072131 GGTGTTAGCTCAGATGGTGAAAA 58.928 43.478 0.00 0.00 33.60 2.29
572 592 3.072330 TGGTGTTAGCTCAGATGGTGAAA 59.928 43.478 0.00 0.00 33.60 2.69
573 593 2.637382 TGGTGTTAGCTCAGATGGTGAA 59.363 45.455 0.00 0.00 33.60 3.18
574 594 2.256306 TGGTGTTAGCTCAGATGGTGA 58.744 47.619 0.00 0.00 0.00 4.02
575 595 2.768253 TGGTGTTAGCTCAGATGGTG 57.232 50.000 0.00 0.00 0.00 4.17
577 597 3.272574 ACATGGTGTTAGCTCAGATGG 57.727 47.619 0.00 0.00 0.00 3.51
578 598 5.819379 ACATTACATGGTGTTAGCTCAGATG 59.181 40.000 0.00 0.00 33.60 2.90
580 600 5.420725 ACATTACATGGTGTTAGCTCAGA 57.579 39.130 0.00 0.00 33.60 3.27
581 601 7.792374 ATTACATTACATGGTGTTAGCTCAG 57.208 36.000 0.00 0.00 33.60 3.35
582 602 8.482943 AGTATTACATTACATGGTGTTAGCTCA 58.517 33.333 0.00 0.00 33.60 4.26
588 608 8.494433 AGATGGAGTATTACATTACATGGTGTT 58.506 33.333 0.00 0.00 33.60 3.32
589 609 7.933577 CAGATGGAGTATTACATTACATGGTGT 59.066 37.037 0.00 1.70 33.60 4.16
590 610 7.095060 GCAGATGGAGTATTACATTACATGGTG 60.095 40.741 0.00 0.00 33.60 4.17
593 613 7.967890 TGCAGATGGAGTATTACATTACATG 57.032 36.000 0.00 0.00 0.00 3.21
594 614 8.978874 TTTGCAGATGGAGTATTACATTACAT 57.021 30.769 0.00 0.00 0.00 2.29
620 640 8.464404 GGGCTCTAAAAACGTCCTATAATTTTT 58.536 33.333 0.00 0.00 37.80 1.94
621 641 7.612633 TGGGCTCTAAAAACGTCCTATAATTTT 59.387 33.333 0.00 0.00 0.00 1.82
622 642 7.114095 TGGGCTCTAAAAACGTCCTATAATTT 58.886 34.615 0.00 0.00 0.00 1.82
623 643 6.655930 TGGGCTCTAAAAACGTCCTATAATT 58.344 36.000 0.00 0.00 0.00 1.40
627 647 3.118371 CCTGGGCTCTAAAAACGTCCTAT 60.118 47.826 0.00 0.00 0.00 2.57
628 648 2.235402 CCTGGGCTCTAAAAACGTCCTA 59.765 50.000 0.00 0.00 0.00 2.94
629 649 1.003233 CCTGGGCTCTAAAAACGTCCT 59.997 52.381 0.00 0.00 0.00 3.85
630 650 1.002773 TCCTGGGCTCTAAAAACGTCC 59.997 52.381 0.00 0.00 0.00 4.79
631 651 2.347731 CTCCTGGGCTCTAAAAACGTC 58.652 52.381 0.00 0.00 0.00 4.34
633 653 1.003233 ACCTCCTGGGCTCTAAAAACG 59.997 52.381 0.00 0.00 39.10 3.60
636 656 3.200958 ACTACCTCCTGGGCTCTAAAA 57.799 47.619 0.00 0.00 39.10 1.52
637 657 2.942604 ACTACCTCCTGGGCTCTAAA 57.057 50.000 0.00 0.00 39.10 1.85
638 658 4.554553 AATACTACCTCCTGGGCTCTAA 57.445 45.455 0.00 0.00 39.10 2.10
641 661 2.485657 GCAAATACTACCTCCTGGGCTC 60.486 54.545 0.00 0.00 39.10 4.70
646 666 5.543507 ATCTGAGCAAATACTACCTCCTG 57.456 43.478 0.00 0.00 0.00 3.86
647 667 6.352516 CAAATCTGAGCAAATACTACCTCCT 58.647 40.000 0.00 0.00 0.00 3.69
652 672 5.449177 GGTGCCAAATCTGAGCAAATACTAC 60.449 44.000 0.00 0.00 38.45 2.73
653 673 4.640201 GGTGCCAAATCTGAGCAAATACTA 59.360 41.667 0.00 0.00 38.45 1.82
654 674 3.445096 GGTGCCAAATCTGAGCAAATACT 59.555 43.478 0.00 0.00 38.45 2.12
706 924 5.539582 TCCGCATAACTAATGTGTTTGAC 57.460 39.130 0.00 0.00 43.36 3.18
749 968 1.800805 TCTGCGCTCTTCCAAGAAAG 58.199 50.000 9.73 0.00 34.03 2.62
753 972 4.626042 ACTTATATCTGCGCTCTTCCAAG 58.374 43.478 9.73 8.27 0.00 3.61
754 973 4.672587 ACTTATATCTGCGCTCTTCCAA 57.327 40.909 9.73 0.00 0.00 3.53
756 975 5.122512 TGTACTTATATCTGCGCTCTTCC 57.877 43.478 9.73 0.00 0.00 3.46
758 977 5.776173 ACTGTACTTATATCTGCGCTCTT 57.224 39.130 9.73 0.00 0.00 2.85
761 980 7.095607 GCAAATTACTGTACTTATATCTGCGCT 60.096 37.037 9.73 0.00 0.00 5.92
773 992 6.142818 TGTTTGCTTGCAAATTACTGTACT 57.857 33.333 21.25 0.00 0.00 2.73
774 993 6.695278 TCTTGTTTGCTTGCAAATTACTGTAC 59.305 34.615 21.25 9.20 0.00 2.90
775 994 6.800543 TCTTGTTTGCTTGCAAATTACTGTA 58.199 32.000 21.25 4.36 0.00 2.74
777 996 6.128742 GGATCTTGTTTGCTTGCAAATTACTG 60.129 38.462 21.25 11.56 0.00 2.74
778 997 5.928264 GGATCTTGTTTGCTTGCAAATTACT 59.072 36.000 21.25 8.02 0.00 2.24
779 998 5.695816 TGGATCTTGTTTGCTTGCAAATTAC 59.304 36.000 21.25 11.72 0.00 1.89
799 4284 1.341383 GGACCAGGCTTGATTGTGGAT 60.341 52.381 0.00 0.00 33.95 3.41
971 4471 1.989966 CTGCAGCCGCTGATTTGGAG 61.990 60.000 24.80 4.09 39.30 3.86
973 4473 2.488355 CTGCAGCCGCTGATTTGG 59.512 61.111 24.80 4.57 39.30 3.28
981 4481 4.410743 GTTCTTGCCTGCAGCCGC 62.411 66.667 8.66 8.22 42.71 6.53
992 4494 2.598589 CCATTTGCGTCATGGTTCTTG 58.401 47.619 0.00 0.00 37.07 3.02
1771 5418 6.074648 AGGATTTTGGTTTCATGGTAGTTGA 58.925 36.000 0.00 0.00 0.00 3.18
1776 5423 4.770010 GTGGAGGATTTTGGTTTCATGGTA 59.230 41.667 0.00 0.00 0.00 3.25
1810 5457 8.272173 ACCTATAGGAGCTAAAATTGCAACTAA 58.728 33.333 26.01 0.00 38.94 2.24
1986 5645 2.810274 GAGCTTGTCTGTGAATTGCTCA 59.190 45.455 0.00 0.00 43.18 4.26
2263 5925 0.247460 CGTGTGCTCCAATCCAGAGA 59.753 55.000 0.00 0.00 32.86 3.10
2338 6000 2.342354 CCAAATGAGCGATTCGTTTTGC 59.658 45.455 8.03 0.00 41.88 3.68
2442 6104 3.780294 TGGTAACCACTTGGCTCATATCT 59.220 43.478 0.00 0.00 39.32 1.98
2565 6227 3.589988 GAGATTCTTTCTTCCGCTGACA 58.410 45.455 0.00 0.00 33.74 3.58
2583 6245 1.202891 TCTGACTGGGAAGTGTCGAGA 60.203 52.381 0.00 0.00 36.10 4.04
3114 6779 3.118592 AGGTGGAGCTCGAAGGAATAAAG 60.119 47.826 7.83 0.00 0.00 1.85
3249 9815 7.476540 ACTAACATACCAACTGATCAGTGTA 57.523 36.000 28.52 24.53 41.58 2.90
3292 9861 1.822990 CCAGTGGAAATGCTGCAGAAT 59.177 47.619 20.43 10.50 0.00 2.40
3344 9921 3.315470 AGCGACCTTTTCTCCTTTTTGAC 59.685 43.478 0.00 0.00 0.00 3.18
3368 9945 5.009911 TCTCGTAACAGCTTACAACAGGTTA 59.990 40.000 0.00 0.00 33.01 2.85
3502 10131 8.385858 GCTAAAAATCTGAATTCTTTGGATTGC 58.614 33.333 7.05 7.36 0.00 3.56
3534 10164 1.684386 CCTCCTCCTACTGGCAGCTG 61.684 65.000 15.89 10.11 0.00 4.24
3540 10170 2.291930 ACTGAGTTCCTCCTCCTACTGG 60.292 54.545 0.00 0.00 0.00 4.00
3570 10200 1.741706 CATTGCTTGTGAGGTAGGCAG 59.258 52.381 0.00 0.00 34.37 4.85
3587 10217 0.035152 TCACCAGCGGCAATCTCATT 60.035 50.000 1.45 0.00 0.00 2.57
3619 10249 8.163408 TCTGTTTCCCTTTATCATTTCTTCTCA 58.837 33.333 0.00 0.00 0.00 3.27
3634 10264 2.548920 CGTCTCTTGCTCTGTTTCCCTT 60.549 50.000 0.00 0.00 0.00 3.95
3655 10285 3.154827 TGAACAGAAACTGAATCCCCC 57.845 47.619 5.76 0.00 35.18 5.40
3683 10313 5.704515 GGCTGAGCATATGTAATGAGTCAAT 59.295 40.000 6.82 0.00 0.00 2.57
3697 10327 3.654273 AGGTACTTAAGGGCTGAGCATA 58.346 45.455 6.82 0.00 27.25 3.14
3719 10349 2.038975 TACCCGCAAGAGGAGGCT 59.961 61.111 0.00 0.00 43.02 4.58
3721 10351 0.108138 CTTGTACCCGCAAGAGGAGG 60.108 60.000 0.00 0.00 46.34 4.30
3757 10387 5.525378 GTGGGCTATGTCTCTTTACAGATTG 59.475 44.000 0.00 0.00 31.70 2.67
3763 10393 3.933332 GTGTGTGGGCTATGTCTCTTTAC 59.067 47.826 0.00 0.00 0.00 2.01
3768 10398 1.276421 ACTGTGTGTGGGCTATGTCTC 59.724 52.381 0.00 0.00 0.00 3.36
3805 10437 2.445427 TGCCACCATGTAACCTGAATG 58.555 47.619 0.00 0.00 0.00 2.67
3806 10438 2.825532 GTTGCCACCATGTAACCTGAAT 59.174 45.455 0.00 0.00 0.00 2.57
3829 10461 0.179000 CTGAGTGTCATACCCCAGGC 59.821 60.000 0.00 0.00 30.98 4.85
3901 10533 6.426633 TGATACCATGTGTGTTGTTACTGAAG 59.573 38.462 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.