Multiple sequence alignment - TraesCS3B01G076300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G076300 chr3B 100.000 6792 0 0 1 6792 47130070 47123279 0.000000e+00 12543.0
1 TraesCS3B01G076300 chr3B 96.741 1258 39 2 3215 4471 46357958 46359214 0.000000e+00 2095.0
2 TraesCS3B01G076300 chr3B 96.398 1277 26 9 4591 5858 46361557 46362822 0.000000e+00 2085.0
3 TraesCS3B01G076300 chr3B 98.117 956 16 2 5839 6792 46362863 46363818 0.000000e+00 1664.0
4 TraesCS3B01G076300 chr3B 84.895 715 74 15 3 699 46356540 46357238 0.000000e+00 691.0
5 TraesCS3B01G076300 chr3B 87.085 271 23 6 1872 2133 409334860 409334593 5.150000e-76 296.0
6 TraesCS3B01G076300 chr3B 83.988 331 28 17 1524 1845 46357613 46357927 1.850000e-75 294.0
7 TraesCS3B01G076300 chr3B 83.540 322 43 8 33 351 268270899 268270585 6.660000e-75 292.0
8 TraesCS3B01G076300 chr3B 92.118 203 12 3 2275 2473 47127296 47127094 4.010000e-72 283.0
9 TraesCS3B01G076300 chr3B 92.118 203 12 3 2775 2977 47127796 47127598 4.010000e-72 283.0
10 TraesCS3B01G076300 chr3B 89.394 198 5 2 1749 1934 46357265 46357458 1.140000e-57 235.0
11 TraesCS3B01G076300 chr3B 100.000 28 0 0 6617 6644 79132254 79132281 1.200000e-02 52.8
12 TraesCS3B01G076300 chr3A 94.440 3435 147 20 2495 5894 37817369 37820794 0.000000e+00 5245.0
13 TraesCS3B01G076300 chr3A 89.682 911 47 16 1043 1924 37834412 37833520 0.000000e+00 1118.0
14 TraesCS3B01G076300 chr3A 87.645 518 45 8 43 545 37835293 37834780 9.820000e-163 584.0
15 TraesCS3B01G076300 chr3A 93.529 340 17 3 6404 6743 37821410 37821744 1.020000e-137 501.0
16 TraesCS3B01G076300 chr3A 86.127 346 29 9 866 1208 37834669 37834340 8.380000e-94 355.0
17 TraesCS3B01G076300 chr3A 94.898 196 8 2 6213 6406 37821134 37821329 8.560000e-79 305.0
18 TraesCS3B01G076300 chr3A 84.333 300 32 7 1975 2262 37817308 37817604 5.190000e-71 279.0
19 TraesCS3B01G076300 chr3A 82.014 278 44 4 36 311 421633192 421633465 1.470000e-56 231.0
20 TraesCS3B01G076300 chr3A 98.450 129 2 0 6088 6216 37820914 37821042 1.910000e-55 228.0
21 TraesCS3B01G076300 chr3A 92.366 131 4 4 5922 6047 37820790 37820919 1.500000e-41 182.0
22 TraesCS3B01G076300 chr3A 95.652 46 2 0 2596 2641 37817594 37817639 2.630000e-09 75.0
23 TraesCS3B01G076300 chr3D 95.467 3199 114 11 2495 5665 27954727 27951532 0.000000e+00 5075.0
24 TraesCS3B01G076300 chr3D 87.072 1957 126 53 6 1924 27957266 27955399 0.000000e+00 2095.0
25 TraesCS3B01G076300 chr3D 91.956 1094 39 21 5715 6791 27951523 27950462 0.000000e+00 1487.0
26 TraesCS3B01G076300 chr3D 82.529 767 77 31 1524 2262 27955226 27954489 7.480000e-174 621.0
27 TraesCS3B01G076300 chr3D 82.319 345 29 18 1471 1801 114343649 114343975 3.120000e-68 270.0
28 TraesCS3B01G076300 chr3D 82.129 263 43 2 99 361 310712819 310712561 8.870000e-54 222.0
29 TraesCS3B01G076300 chr4A 88.562 612 45 13 1028 1626 89757820 89758419 0.000000e+00 719.0
30 TraesCS3B01G076300 chr4A 84.043 282 20 10 1661 1924 89758423 89758697 1.460000e-61 248.0
31 TraesCS3B01G076300 chr4A 80.603 232 25 13 966 1194 89757679 89757893 1.960000e-35 161.0
32 TraesCS3B01G076300 chr1B 88.104 269 25 4 1872 2133 3845986 3846254 5.110000e-81 313.0
33 TraesCS3B01G076300 chr1B 82.029 345 30 18 1471 1801 3845642 3845968 1.450000e-66 265.0
34 TraesCS3B01G076300 chr5D 87.868 272 20 7 1872 2133 462630740 462631008 2.380000e-79 307.0
35 TraesCS3B01G076300 chr5D 87.500 272 21 7 1872 2133 556634679 556634947 1.110000e-77 302.0
36 TraesCS3B01G076300 chr5D 82.029 345 30 19 1471 1801 462630396 462630722 1.450000e-66 265.0
37 TraesCS3B01G076300 chr5A 87.454 271 21 6 1872 2133 543658194 543658460 3.980000e-77 300.0
38 TraesCS3B01G076300 chr2D 87.132 272 21 8 1872 2133 584517309 584517576 5.150000e-76 296.0
39 TraesCS3B01G076300 chr2D 81.924 343 34 13 1471 1801 584516965 584517291 1.450000e-66 265.0
40 TraesCS3B01G076300 chr6D 86.765 272 22 7 1872 2133 111309586 111309319 2.400000e-74 291.0
41 TraesCS3B01G076300 chr1D 83.282 323 28 16 1471 1785 262486548 262486852 2.410000e-69 274.0
42 TraesCS3B01G076300 chr7A 82.319 345 29 18 1471 1801 104381193 104380867 3.120000e-68 270.0
43 TraesCS3B01G076300 chr2A 82.029 345 30 18 1471 1801 547865307 547865633 1.450000e-66 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G076300 chr3B 47123279 47130070 6791 True 4369.666667 12543 94.745333 1 6792 3 chr3B.!!$R3 6791
1 TraesCS3B01G076300 chr3B 46356540 46363818 7278 False 1177.333333 2095 91.588833 3 6792 6 chr3B.!!$F2 6789
2 TraesCS3B01G076300 chr3A 37817308 37821744 4436 False 973.571429 5245 93.381143 1975 6743 7 chr3A.!!$F2 4768
3 TraesCS3B01G076300 chr3A 37833520 37835293 1773 True 685.666667 1118 87.818000 43 1924 3 chr3A.!!$R1 1881
4 TraesCS3B01G076300 chr3D 27950462 27957266 6804 True 2319.500000 5075 89.256000 6 6791 4 chr3D.!!$R2 6785
5 TraesCS3B01G076300 chr4A 89757679 89758697 1018 False 376.000000 719 84.402667 966 1924 3 chr4A.!!$F1 958
6 TraesCS3B01G076300 chr1B 3845642 3846254 612 False 289.000000 313 85.066500 1471 2133 2 chr1B.!!$F1 662
7 TraesCS3B01G076300 chr5D 462630396 462631008 612 False 286.000000 307 84.948500 1471 2133 2 chr5D.!!$F2 662
8 TraesCS3B01G076300 chr2D 584516965 584517576 611 False 280.500000 296 84.528000 1471 2133 2 chr2D.!!$F1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1032 0.107752 CTTCCTCTGCAAGCTCTCCC 60.108 60.0 0.00 0.0 0.00 4.30 F
1744 1896 0.834612 ACGTCTCCCTGGTTTGTCAA 59.165 50.0 0.00 0.0 0.00 3.18 F
2201 2591 0.183492 TCCAACTCTGCCTGCTGTTT 59.817 50.0 0.00 0.0 0.00 2.83 F
2204 2594 0.183492 AACTCTGCCTGCTGTTTGGA 59.817 50.0 0.00 0.0 0.00 3.53 F
2205 2595 0.183492 ACTCTGCCTGCTGTTTGGAA 59.817 50.0 0.00 0.0 0.00 3.53 F
2875 3369 0.464452 CCTCAAGGTTAGGGCTACCG 59.536 60.0 0.00 0.0 43.47 4.02 F
3804 4298 0.607620 GTGGCCAGGCTTATTTTGCA 59.392 50.0 5.11 0.0 0.00 4.08 F
3955 4449 0.804364 TGAATTTGCAGGCTACAGCG 59.196 50.0 0.00 0.0 43.26 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2182 2572 0.183492 AAACAGCAGGCAGAGTTGGA 59.817 50.000 0.00 0.00 0.00 3.53 R
2995 3489 0.810648 CCACACGTCATGATTTGGGG 59.189 55.000 12.15 12.15 0.00 4.96 R
3832 4326 0.041312 CGCTCACAAAAGGGTCGTTG 60.041 55.000 0.00 0.00 0.00 4.10 R
3955 4449 2.280457 GGAGGCATGTCCGCTAGC 60.280 66.667 4.06 4.06 40.77 3.42 R
4073 4567 2.600470 TTGGAAACGACGTGTTAGGT 57.400 45.000 0.00 0.00 40.84 3.08 R
4807 7533 1.372683 GGAACTGAGTGCCTGCAGA 59.627 57.895 17.39 0.00 36.07 4.26 R
5558 8294 1.153229 GAACCGTCCCCCAGCATAC 60.153 63.158 0.00 0.00 0.00 2.39 R
5876 8673 2.689646 GTCAGTACAAGCAGAGGAACC 58.310 52.381 0.00 0.00 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.350057 TGGGTTGTCGAAATCCAACA 57.650 45.000 15.80 0.00 42.09 3.33
24 25 2.226330 TGGGTTGTCGAAATCCAACAG 58.774 47.619 15.80 0.00 42.09 3.16
67 68 4.513406 TCGCCCCCTTGATAAATAAAGT 57.487 40.909 0.00 0.00 0.00 2.66
113 114 4.261801 CCGAAAGATACAAGGTGGTGAAT 58.738 43.478 0.00 0.00 0.00 2.57
146 147 0.327000 AAGCAGATCCCAGGCTACCT 60.327 55.000 0.00 0.00 36.76 3.08
165 166 1.946768 CTGGAACACGAAGAAGGCAAA 59.053 47.619 0.00 0.00 0.00 3.68
167 168 1.335051 GGAACACGAAGAAGGCAAAGC 60.335 52.381 0.00 0.00 0.00 3.51
228 229 1.140134 ACCCCATGCAACACCCTAGT 61.140 55.000 0.00 0.00 0.00 2.57
229 230 0.916086 CCCCATGCAACACCCTAGTA 59.084 55.000 0.00 0.00 0.00 1.82
230 231 1.134098 CCCCATGCAACACCCTAGTAG 60.134 57.143 0.00 0.00 0.00 2.57
263 265 1.363744 CTCGACAATGCCCTCAAGAC 58.636 55.000 0.00 0.00 0.00 3.01
271 273 0.606604 TGCCCTCAAGACGTAGAACC 59.393 55.000 0.00 0.00 0.00 3.62
291 293 2.159272 GACCAAAGCGTCGTCACTGC 62.159 60.000 0.00 0.00 0.00 4.40
301 303 1.219124 CGTCACTGCCTAGCCACAT 59.781 57.895 0.00 0.00 0.00 3.21
354 356 2.524306 GGAGAGGAGATCCATGACGAT 58.476 52.381 0.92 0.00 38.89 3.73
357 359 3.303938 AGAGGAGATCCATGACGATGTT 58.696 45.455 0.92 0.00 38.89 2.71
415 434 5.060662 TGGATTGTCTCTTTCGTCTACAG 57.939 43.478 0.00 0.00 0.00 2.74
420 439 4.386711 TGTCTCTTTCGTCTACAGAGTCA 58.613 43.478 0.00 0.00 36.27 3.41
534 553 7.123355 TCTTTGGGAATCATTGTGAGTTTTT 57.877 32.000 0.00 0.00 0.00 1.94
628 664 5.058490 ACAACCGACGGATTCTTTAGAAAA 58.942 37.500 23.38 0.00 37.61 2.29
629 665 5.528320 ACAACCGACGGATTCTTTAGAAAAA 59.472 36.000 23.38 0.00 37.61 1.94
654 690 1.680860 GGAGGGTGTTCATAAACGGGG 60.681 57.143 0.00 0.00 38.28 5.73
657 693 1.470051 GGTGTTCATAAACGGGGCAT 58.530 50.000 0.00 0.00 38.28 4.40
658 694 2.645802 GGTGTTCATAAACGGGGCATA 58.354 47.619 0.00 0.00 38.28 3.14
663 699 4.141459 TGTTCATAAACGGGGCATATGGTA 60.141 41.667 4.56 0.00 38.28 3.25
664 700 4.708576 TCATAAACGGGGCATATGGTAA 57.291 40.909 4.56 0.00 0.00 2.85
665 701 5.249780 TCATAAACGGGGCATATGGTAAT 57.750 39.130 4.56 0.00 0.00 1.89
676 712 6.404734 GGGGCATATGGTAATCGATTTTGATC 60.405 42.308 17.19 0.00 0.00 2.92
701 737 6.469595 CCGAGTAATCGAGTGAAAGTCTTTAG 59.530 42.308 15.13 0.00 32.88 1.85
702 738 6.469595 CGAGTAATCGAGTGAAAGTCTTTAGG 59.530 42.308 6.77 0.00 32.88 2.69
706 742 5.073311 TCGAGTGAAAGTCTTTAGGATGG 57.927 43.478 0.00 0.00 32.88 3.51
713 749 5.433051 TGAAAGTCTTTAGGATGGGATGGAT 59.567 40.000 0.00 0.00 0.00 3.41
730 766 6.126409 GGATGGATCCAACTTGTACCAAATA 58.874 40.000 20.67 0.00 46.38 1.40
741 777 7.553881 ACTTGTACCAAATAATTGATCCGAG 57.446 36.000 0.00 0.00 38.94 4.63
751 787 4.222847 GATCCGAGTGACCCGGGC 62.223 72.222 24.08 14.70 46.47 6.13
759 795 0.322546 AGTGACCCGGGCTGAAATTC 60.323 55.000 24.08 9.54 0.00 2.17
764 800 2.618709 GACCCGGGCTGAAATTCATAAG 59.381 50.000 24.08 0.00 0.00 1.73
793 829 2.554462 CACTGACAGTTTCTCCGAGAGA 59.446 50.000 5.04 0.11 36.86 3.10
799 835 2.163412 CAGTTTCTCCGAGAGACAGAGG 59.837 54.545 18.56 4.45 38.51 3.69
801 837 2.820787 GTTTCTCCGAGAGACAGAGGAA 59.179 50.000 12.99 0.00 38.51 3.36
834 870 0.442310 ATTCGGTCGAACACATTGCG 59.558 50.000 8.00 0.00 36.91 4.85
843 879 3.276109 CACATTGCGTGCCATCCA 58.724 55.556 0.00 0.00 39.19 3.41
844 880 1.153978 CACATTGCGTGCCATCCAC 60.154 57.895 0.00 0.00 39.19 4.02
899 941 3.093172 GGCCCCTTCCCTCTCCTG 61.093 72.222 0.00 0.00 0.00 3.86
944 986 1.570813 GCCAAAAGCAACTGACAACC 58.429 50.000 0.00 0.00 42.97 3.77
945 987 1.838913 CCAAAAGCAACTGACAACCG 58.161 50.000 0.00 0.00 0.00 4.44
946 988 1.134175 CCAAAAGCAACTGACAACCGT 59.866 47.619 0.00 0.00 0.00 4.83
947 989 2.356382 CCAAAAGCAACTGACAACCGTA 59.644 45.455 0.00 0.00 0.00 4.02
948 990 3.181495 CCAAAAGCAACTGACAACCGTAA 60.181 43.478 0.00 0.00 0.00 3.18
949 991 3.685836 AAAGCAACTGACAACCGTAAC 57.314 42.857 0.00 0.00 0.00 2.50
950 992 2.614829 AGCAACTGACAACCGTAACT 57.385 45.000 0.00 0.00 0.00 2.24
987 1029 2.290197 CCTTTCTTCCTCTGCAAGCTCT 60.290 50.000 0.00 0.00 0.00 4.09
990 1032 0.107752 CTTCCTCTGCAAGCTCTCCC 60.108 60.000 0.00 0.00 0.00 4.30
991 1033 1.557269 TTCCTCTGCAAGCTCTCCCC 61.557 60.000 0.00 0.00 0.00 4.81
1626 1778 7.011389 TGGATCAAATCAACTAATCGCTTACAG 59.989 37.037 0.00 0.00 0.00 2.74
1630 1782 7.763985 TCAAATCAACTAATCGCTTACAGATCA 59.236 33.333 0.00 0.00 0.00 2.92
1659 1811 7.374228 CACATACGCATGCTTAATTTTACAGAG 59.626 37.037 17.13 0.00 35.39 3.35
1662 1814 7.372451 ACGCATGCTTAATTTTACAGAGTTA 57.628 32.000 17.13 0.00 0.00 2.24
1678 1830 7.540474 ACAGAGTTATTTGACTGACTTCCTA 57.460 36.000 0.00 0.00 34.88 2.94
1725 1877 5.875224 TGTTTCTTGGATGTGGATCAAGTA 58.125 37.500 0.00 0.00 0.00 2.24
1726 1878 5.705441 TGTTTCTTGGATGTGGATCAAGTAC 59.295 40.000 0.00 0.00 0.00 2.73
1727 1879 4.123497 TCTTGGATGTGGATCAAGTACG 57.877 45.455 0.00 0.00 0.00 3.67
1728 1880 3.513912 TCTTGGATGTGGATCAAGTACGT 59.486 43.478 0.00 0.00 0.00 3.57
1731 1883 3.130516 TGGATGTGGATCAAGTACGTCTC 59.869 47.826 0.00 0.00 32.39 3.36
1732 1884 3.491104 GGATGTGGATCAAGTACGTCTCC 60.491 52.174 0.00 1.32 32.39 3.71
1733 1885 1.822990 TGTGGATCAAGTACGTCTCCC 59.177 52.381 0.00 0.00 0.00 4.30
1735 1887 2.100197 TGGATCAAGTACGTCTCCCTG 58.900 52.381 0.00 0.00 0.00 4.45
1737 1889 2.100989 GATCAAGTACGTCTCCCTGGT 58.899 52.381 0.00 0.00 0.00 4.00
1739 1891 2.322658 TCAAGTACGTCTCCCTGGTTT 58.677 47.619 0.00 0.00 0.00 3.27
1740 1892 2.036733 TCAAGTACGTCTCCCTGGTTTG 59.963 50.000 0.00 0.00 0.00 2.93
1741 1893 1.713297 AGTACGTCTCCCTGGTTTGT 58.287 50.000 0.00 0.00 0.00 2.83
1742 1894 1.617357 AGTACGTCTCCCTGGTTTGTC 59.383 52.381 0.00 0.00 0.00 3.18
1743 1895 1.342174 GTACGTCTCCCTGGTTTGTCA 59.658 52.381 0.00 0.00 0.00 3.58
1744 1896 0.834612 ACGTCTCCCTGGTTTGTCAA 59.165 50.000 0.00 0.00 0.00 3.18
1746 1898 1.806542 CGTCTCCCTGGTTTGTCAATG 59.193 52.381 0.00 0.00 0.00 2.82
1755 1913 2.955660 TGGTTTGTCAATGAGTTCACCC 59.044 45.455 0.00 0.00 0.00 4.61
1827 1991 4.638421 TGGTGGCTAATGGAAGAATTAACG 59.362 41.667 0.00 0.00 0.00 3.18
1937 2125 2.744202 CAGGGAAAGTCGATGGTCAAAG 59.256 50.000 0.00 0.00 0.00 2.77
1942 2130 5.646360 GGGAAAGTCGATGGTCAAAGAATTA 59.354 40.000 0.00 0.00 0.00 1.40
1957 2145 6.712998 TCAAAGAATTAACGTCCATTCTCCAA 59.287 34.615 17.94 7.66 38.55 3.53
1961 2149 6.884295 AGAATTAACGTCCATTCTCCAAATCA 59.116 34.615 13.80 0.00 35.21 2.57
1981 2169 3.517901 TCATAACCTGTGGTTCTCGGATT 59.482 43.478 5.16 0.00 43.05 3.01
2033 2225 3.052109 TCCCAGGAAGTAGATGAGCCTAA 60.052 47.826 0.00 0.00 0.00 2.69
2055 2247 7.436080 CCTAATTTATTTAACAGGCATGCTGTG 59.564 37.037 18.92 17.31 34.97 3.66
2073 2265 6.194235 TGCTGTGTTATTAAATCAGGGGAAT 58.806 36.000 9.56 0.00 0.00 3.01
2125 2515 5.482163 TGTCAGTGGATGTTGATCAAGTA 57.518 39.130 8.80 1.26 0.00 2.24
2126 2516 5.237815 TGTCAGTGGATGTTGATCAAGTAC 58.762 41.667 8.80 2.11 0.00 2.73
2136 2526 4.141367 TGTTGATCAAGTACCCCTTTGTCA 60.141 41.667 8.80 0.00 0.00 3.58
2144 2534 5.836024 AGTACCCCTTTGTCAATGAGTTA 57.164 39.130 0.12 0.00 0.00 2.24
2146 2536 6.790319 AGTACCCCTTTGTCAATGAGTTATT 58.210 36.000 0.12 0.00 0.00 1.40
2147 2537 7.924541 AGTACCCCTTTGTCAATGAGTTATTA 58.075 34.615 0.12 0.00 0.00 0.98
2152 2542 8.971073 CCCCTTTGTCAATGAGTTATTAATTCT 58.029 33.333 0.00 0.00 0.00 2.40
2172 2562 8.779354 AATTCTCGTTAGAAATAAGAGCAAGT 57.221 30.769 0.00 0.00 44.75 3.16
2173 2563 8.779354 ATTCTCGTTAGAAATAAGAGCAAGTT 57.221 30.769 0.00 0.00 44.75 2.66
2174 2564 8.603242 TTCTCGTTAGAAATAAGAGCAAGTTT 57.397 30.769 0.00 0.00 38.81 2.66
2175 2565 8.603242 TCTCGTTAGAAATAAGAGCAAGTTTT 57.397 30.769 0.00 0.00 0.00 2.43
2176 2566 8.495949 TCTCGTTAGAAATAAGAGCAAGTTTTG 58.504 33.333 0.00 0.00 0.00 2.44
2190 2580 5.695851 CAAGTTTTGCTATGTCCAACTCT 57.304 39.130 0.00 0.00 0.00 3.24
2191 2581 5.455392 CAAGTTTTGCTATGTCCAACTCTG 58.545 41.667 0.00 0.00 0.00 3.35
2192 2582 3.503748 AGTTTTGCTATGTCCAACTCTGC 59.496 43.478 0.00 0.00 0.00 4.26
2193 2583 2.113860 TTGCTATGTCCAACTCTGCC 57.886 50.000 0.00 0.00 0.00 4.85
2194 2584 1.279496 TGCTATGTCCAACTCTGCCT 58.721 50.000 0.00 0.00 0.00 4.75
2195 2585 1.065926 TGCTATGTCCAACTCTGCCTG 60.066 52.381 0.00 0.00 0.00 4.85
2196 2586 1.661341 CTATGTCCAACTCTGCCTGC 58.339 55.000 0.00 0.00 0.00 4.85
2197 2587 1.209019 CTATGTCCAACTCTGCCTGCT 59.791 52.381 0.00 0.00 0.00 4.24
2198 2588 0.322277 ATGTCCAACTCTGCCTGCTG 60.322 55.000 0.00 0.00 0.00 4.41
2199 2589 1.072159 GTCCAACTCTGCCTGCTGT 59.928 57.895 0.00 0.00 0.00 4.40
2200 2590 0.536006 GTCCAACTCTGCCTGCTGTT 60.536 55.000 0.00 0.00 0.00 3.16
2201 2591 0.183492 TCCAACTCTGCCTGCTGTTT 59.817 50.000 0.00 0.00 0.00 2.83
2202 2592 0.313043 CCAACTCTGCCTGCTGTTTG 59.687 55.000 0.00 0.00 0.00 2.93
2203 2593 0.313043 CAACTCTGCCTGCTGTTTGG 59.687 55.000 0.00 0.00 0.00 3.28
2204 2594 0.183492 AACTCTGCCTGCTGTTTGGA 59.817 50.000 0.00 0.00 0.00 3.53
2205 2595 0.183492 ACTCTGCCTGCTGTTTGGAA 59.817 50.000 0.00 0.00 0.00 3.53
2206 2596 1.321474 CTCTGCCTGCTGTTTGGAAA 58.679 50.000 0.00 0.00 0.00 3.13
2207 2597 1.891150 CTCTGCCTGCTGTTTGGAAAT 59.109 47.619 0.00 0.00 0.00 2.17
2208 2598 3.084039 CTCTGCCTGCTGTTTGGAAATA 58.916 45.455 0.00 0.00 0.00 1.40
2209 2599 3.495331 TCTGCCTGCTGTTTGGAAATAA 58.505 40.909 0.00 0.00 0.00 1.40
2210 2600 3.255642 TCTGCCTGCTGTTTGGAAATAAC 59.744 43.478 0.00 0.00 0.00 1.89
2211 2601 2.298729 TGCCTGCTGTTTGGAAATAACC 59.701 45.455 0.00 0.00 0.00 2.85
2212 2602 2.562738 GCCTGCTGTTTGGAAATAACCT 59.437 45.455 0.00 0.00 0.00 3.50
2213 2603 3.006859 GCCTGCTGTTTGGAAATAACCTT 59.993 43.478 0.00 0.00 0.00 3.50
2214 2604 4.219725 GCCTGCTGTTTGGAAATAACCTTA 59.780 41.667 0.00 0.00 0.00 2.69
2215 2605 5.105351 GCCTGCTGTTTGGAAATAACCTTAT 60.105 40.000 0.00 0.00 0.00 1.73
2216 2606 6.574269 GCCTGCTGTTTGGAAATAACCTTATT 60.574 38.462 0.00 0.00 34.98 1.40
2217 2607 6.813152 CCTGCTGTTTGGAAATAACCTTATTG 59.187 38.462 0.00 0.00 33.85 1.90
2218 2608 7.296628 TGCTGTTTGGAAATAACCTTATTGT 57.703 32.000 0.00 0.00 33.85 2.71
2219 2609 7.731054 TGCTGTTTGGAAATAACCTTATTGTT 58.269 30.769 0.00 0.00 33.85 2.83
2220 2610 8.207545 TGCTGTTTGGAAATAACCTTATTGTTT 58.792 29.630 0.00 0.00 33.85 2.83
2221 2611 8.708742 GCTGTTTGGAAATAACCTTATTGTTTC 58.291 33.333 1.53 1.53 33.85 2.78
2222 2612 9.981114 CTGTTTGGAAATAACCTTATTGTTTCT 57.019 29.630 8.24 0.00 33.85 2.52
2225 2615 8.825667 TTGGAAATAACCTTATTGTTTCTTGC 57.174 30.769 8.24 0.00 33.85 4.01
2226 2616 7.957002 TGGAAATAACCTTATTGTTTCTTGCA 58.043 30.769 8.24 0.00 33.85 4.08
2227 2617 8.592809 TGGAAATAACCTTATTGTTTCTTGCAT 58.407 29.630 8.24 0.00 33.85 3.96
2228 2618 9.087424 GGAAATAACCTTATTGTTTCTTGCATC 57.913 33.333 8.24 0.00 33.85 3.91
2229 2619 9.638239 GAAATAACCTTATTGTTTCTTGCATCA 57.362 29.630 0.00 0.00 33.85 3.07
2230 2620 9.643693 AAATAACCTTATTGTTTCTTGCATCAG 57.356 29.630 0.00 0.00 33.85 2.90
2231 2621 5.649782 ACCTTATTGTTTCTTGCATCAGG 57.350 39.130 0.00 0.00 0.00 3.86
2232 2622 4.463891 ACCTTATTGTTTCTTGCATCAGGG 59.536 41.667 0.00 0.00 0.00 4.45
2233 2623 4.706476 CCTTATTGTTTCTTGCATCAGGGA 59.294 41.667 0.00 0.00 0.00 4.20
2234 2624 5.185635 CCTTATTGTTTCTTGCATCAGGGAA 59.814 40.000 0.00 0.00 0.00 3.97
2235 2625 4.796038 ATTGTTTCTTGCATCAGGGAAG 57.204 40.909 0.00 0.00 45.50 3.46
2242 2632 2.099141 TGCATCAGGGAAGAACTTCG 57.901 50.000 8.20 0.00 40.37 3.79
2252 2642 3.074412 GGAAGAACTTCGCCATCTTTCA 58.926 45.455 8.20 0.00 40.37 2.69
2253 2643 3.691609 GGAAGAACTTCGCCATCTTTCAT 59.308 43.478 8.20 0.00 40.37 2.57
2262 2652 6.543465 ACTTCGCCATCTTTCATTGATGAATA 59.457 34.615 7.20 0.59 45.30 1.75
2263 2653 7.230108 ACTTCGCCATCTTTCATTGATGAATAT 59.770 33.333 7.20 2.69 45.30 1.28
2264 2654 6.905578 TCGCCATCTTTCATTGATGAATATG 58.094 36.000 7.20 12.46 45.30 1.78
2265 2655 6.711645 TCGCCATCTTTCATTGATGAATATGA 59.288 34.615 20.22 13.96 45.30 2.15
2266 2656 7.229106 TCGCCATCTTTCATTGATGAATATGAA 59.771 33.333 20.22 0.00 45.30 2.57
2267 2657 7.863877 CGCCATCTTTCATTGATGAATATGAAA 59.136 33.333 20.22 9.19 45.30 2.69
2268 2658 9.537192 GCCATCTTTCATTGATGAATATGAAAA 57.463 29.630 20.22 4.36 45.16 2.29
2295 2694 4.716784 TGTCAGAACTAGTGCCTAATGGAT 59.283 41.667 0.00 0.00 34.57 3.41
2296 2695 5.053145 GTCAGAACTAGTGCCTAATGGATG 58.947 45.833 0.00 0.00 34.57 3.51
2300 2699 6.204301 CAGAACTAGTGCCTAATGGATGAATG 59.796 42.308 0.00 0.00 34.57 2.67
2304 2703 4.858850 AGTGCCTAATGGATGAATGAACA 58.141 39.130 0.00 0.00 34.57 3.18
2313 2712 5.471556 TGGATGAATGAACAAAGTGCATT 57.528 34.783 3.07 3.07 43.72 3.56
2319 2718 8.697846 ATGAATGAACAAAGTGCATTAGATTG 57.302 30.769 3.43 0.00 41.39 2.67
2320 2719 7.092079 TGAATGAACAAAGTGCATTAGATTGG 58.908 34.615 3.43 0.00 41.39 3.16
2332 2731 6.040842 GTGCATTAGATTGGGTCCATTAACAT 59.959 38.462 0.00 0.00 0.00 2.71
2334 2733 6.265196 GCATTAGATTGGGTCCATTAACATGA 59.735 38.462 0.00 0.00 31.07 3.07
2335 2734 7.522725 GCATTAGATTGGGTCCATTAACATGAG 60.523 40.741 0.00 0.00 31.07 2.90
2338 2739 6.969043 AGATTGGGTCCATTAACATGAGTAA 58.031 36.000 0.00 0.00 31.07 2.24
2342 2743 6.726379 TGGGTCCATTAACATGAGTAATCAA 58.274 36.000 0.00 0.00 31.07 2.57
2343 2744 7.353525 TGGGTCCATTAACATGAGTAATCAAT 58.646 34.615 0.00 0.00 31.07 2.57
2362 2763 5.332743 TCAATTAATTCCTGCCTCAAGGTT 58.667 37.500 0.00 0.00 38.58 3.50
2363 2764 6.489603 TCAATTAATTCCTGCCTCAAGGTTA 58.510 36.000 0.00 0.00 38.58 2.85
2364 2765 6.603201 TCAATTAATTCCTGCCTCAAGGTTAG 59.397 38.462 0.00 0.00 38.58 2.34
2365 2766 3.372440 AATTCCTGCCTCAAGGTTAGG 57.628 47.619 12.62 12.62 40.62 2.69
2366 2767 0.991920 TTCCTGCCTCAAGGTTAGGG 59.008 55.000 16.52 6.90 40.08 3.53
2367 2768 1.077429 CCTGCCTCAAGGTTAGGGC 60.077 63.158 11.51 0.00 44.31 5.19
2368 2769 1.566298 CCTGCCTCAAGGTTAGGGCT 61.566 60.000 11.51 0.00 44.36 5.19
2369 2770 1.204146 CTGCCTCAAGGTTAGGGCTA 58.796 55.000 0.00 0.00 44.36 3.93
2370 2771 1.559682 CTGCCTCAAGGTTAGGGCTAA 59.440 52.381 0.00 0.00 44.36 3.09
2371 2772 1.280998 TGCCTCAAGGTTAGGGCTAAC 59.719 52.381 0.00 0.00 44.36 2.34
2372 2773 1.280998 GCCTCAAGGTTAGGGCTAACA 59.719 52.381 0.00 0.00 45.32 2.41
2373 2774 2.092375 GCCTCAAGGTTAGGGCTAACAT 60.092 50.000 0.00 0.00 45.32 2.71
2374 2775 3.624959 GCCTCAAGGTTAGGGCTAACATT 60.625 47.826 0.00 0.00 46.73 2.71
2375 2776 4.600062 CCTCAAGGTTAGGGCTAACATTT 58.400 43.478 0.00 0.00 44.45 2.32
2376 2777 5.751586 CCTCAAGGTTAGGGCTAACATTTA 58.248 41.667 0.00 0.00 44.45 1.40
2377 2778 5.589050 CCTCAAGGTTAGGGCTAACATTTAC 59.411 44.000 0.00 0.00 44.45 2.01
2378 2779 6.382919 TCAAGGTTAGGGCTAACATTTACT 57.617 37.500 0.00 0.00 44.45 2.24
2379 2780 6.177610 TCAAGGTTAGGGCTAACATTTACTG 58.822 40.000 0.00 0.00 44.45 2.74
2380 2781 5.774102 AGGTTAGGGCTAACATTTACTGT 57.226 39.130 0.00 0.00 45.32 3.55
2381 2782 6.433093 CAAGGTTAGGGCTAACATTTACTGTT 59.567 38.462 0.00 0.00 44.45 3.16
2382 2783 6.549242 AGGTTAGGGCTAACATTTACTGTTT 58.451 36.000 0.00 0.00 45.98 2.83
2383 2784 6.433093 AGGTTAGGGCTAACATTTACTGTTTG 59.567 38.462 0.00 0.00 45.98 2.93
2393 2794 6.529463 ACATTTACTGTTTGCTCAATTTGC 57.471 33.333 0.00 0.00 32.90 3.68
2394 2795 6.282930 ACATTTACTGTTTGCTCAATTTGCT 58.717 32.000 2.46 0.00 32.90 3.91
2395 2796 7.432869 ACATTTACTGTTTGCTCAATTTGCTA 58.567 30.769 2.46 0.00 32.90 3.49
2426 2827 9.277783 GCTACAGTATAACTTGATCATGGAAAT 57.722 33.333 12.76 5.90 0.00 2.17
2430 2831 8.285394 CAGTATAACTTGATCATGGAAATTCGG 58.715 37.037 12.76 0.23 0.00 4.30
2432 2833 5.982890 AACTTGATCATGGAAATTCGGTT 57.017 34.783 12.76 0.00 0.00 4.44
2438 2839 5.418524 TGATCATGGAAATTCGGTTGTCAAT 59.581 36.000 0.00 0.00 0.00 2.57
2439 2840 5.720371 TCATGGAAATTCGGTTGTCAATT 57.280 34.783 0.00 0.00 0.00 2.32
2440 2841 6.095432 TCATGGAAATTCGGTTGTCAATTT 57.905 33.333 0.00 0.00 35.38 1.82
2441 2842 5.925397 TCATGGAAATTCGGTTGTCAATTTG 59.075 36.000 0.00 0.00 33.31 2.32
2442 2843 5.521906 TGGAAATTCGGTTGTCAATTTGA 57.478 34.783 0.00 0.00 33.31 2.69
2443 2844 6.095432 TGGAAATTCGGTTGTCAATTTGAT 57.905 33.333 1.78 0.00 33.31 2.57
2444 2845 7.220741 TGGAAATTCGGTTGTCAATTTGATA 57.779 32.000 1.78 0.00 33.31 2.15
2445 2846 7.312154 TGGAAATTCGGTTGTCAATTTGATAG 58.688 34.615 1.78 0.00 33.31 2.08
2446 2847 7.175816 TGGAAATTCGGTTGTCAATTTGATAGA 59.824 33.333 1.78 0.00 33.31 1.98
2447 2848 7.698130 GGAAATTCGGTTGTCAATTTGATAGAG 59.302 37.037 1.78 0.00 33.31 2.43
2448 2849 7.921786 AATTCGGTTGTCAATTTGATAGAGA 57.078 32.000 1.78 0.00 0.00 3.10
2449 2850 7.921786 ATTCGGTTGTCAATTTGATAGAGAA 57.078 32.000 1.78 7.25 0.00 2.87
2450 2851 6.968131 TCGGTTGTCAATTTGATAGAGAAG 57.032 37.500 1.78 0.00 0.00 2.85
2451 2852 6.697395 TCGGTTGTCAATTTGATAGAGAAGA 58.303 36.000 1.78 0.00 0.00 2.87
2452 2853 7.158697 TCGGTTGTCAATTTGATAGAGAAGAA 58.841 34.615 1.78 0.00 0.00 2.52
2453 2854 7.824289 TCGGTTGTCAATTTGATAGAGAAGAAT 59.176 33.333 1.78 0.00 0.00 2.40
2454 2855 7.907045 CGGTTGTCAATTTGATAGAGAAGAATG 59.093 37.037 1.78 0.00 0.00 2.67
2455 2856 7.699812 GGTTGTCAATTTGATAGAGAAGAATGC 59.300 37.037 1.78 0.00 0.00 3.56
2456 2857 8.457261 GTTGTCAATTTGATAGAGAAGAATGCT 58.543 33.333 1.78 0.00 0.00 3.79
2457 2858 8.571461 TGTCAATTTGATAGAGAAGAATGCTT 57.429 30.769 1.78 0.00 36.96 3.91
2458 2859 9.671279 TGTCAATTTGATAGAGAAGAATGCTTA 57.329 29.630 1.78 0.00 33.61 3.09
2489 2890 8.842358 ACTAACGTTCATTCTCCAAATCTTAA 57.158 30.769 2.82 0.00 0.00 1.85
2494 2895 6.149474 CGTTCATTCTCCAAATCTTAACCTGT 59.851 38.462 0.00 0.00 0.00 4.00
2495 2896 7.333423 CGTTCATTCTCCAAATCTTAACCTGTA 59.667 37.037 0.00 0.00 0.00 2.74
2496 2897 8.669243 GTTCATTCTCCAAATCTTAACCTGTAG 58.331 37.037 0.00 0.00 0.00 2.74
2497 2898 7.918076 TCATTCTCCAAATCTTAACCTGTAGT 58.082 34.615 0.00 0.00 0.00 2.73
2498 2899 9.042450 TCATTCTCCAAATCTTAACCTGTAGTA 57.958 33.333 0.00 0.00 0.00 1.82
2592 3057 4.321718 AGTCAGTGGATGTTGATCAAGTG 58.678 43.478 8.80 0.00 35.07 3.16
2600 3065 3.517296 TGTTGATCAAGTGCCCCTTTA 57.483 42.857 8.80 0.00 0.00 1.85
2655 3124 5.992217 AGAGAAAGTTTTGCTATGTCGAACT 59.008 36.000 0.00 0.00 32.33 3.01
2682 3151 5.402398 CCTGCTGTTTGGAAATAAGCTTAC 58.598 41.667 8.70 0.00 33.89 2.34
2691 3160 9.529325 GTTTGGAAATAAGCTTACTGTTTCTTT 57.471 29.630 21.65 12.49 34.32 2.52
2708 3178 6.017934 TGTTTCTTTCATCAGGAAGAACTTCG 60.018 38.462 8.20 0.00 40.37 3.79
2709 3179 4.569943 TCTTTCATCAGGAAGAACTTCGG 58.430 43.478 8.20 4.14 40.37 4.30
2721 3191 3.339141 AGAACTTCGGCATCTTTCCTTC 58.661 45.455 0.00 0.00 0.00 3.46
2727 3197 3.009723 TCGGCATCTTTCCTTCATGAAC 58.990 45.455 3.38 0.00 0.00 3.18
2729 3199 2.478539 GGCATCTTTCCTTCATGAACGC 60.479 50.000 3.38 0.00 0.00 4.84
2758 3252 0.678950 TGTTCTGTCGCATCAGGTGA 59.321 50.000 5.50 0.00 36.25 4.02
2776 3270 1.972075 TGACCGTATTGTCAGGGTTCA 59.028 47.619 0.00 0.00 40.22 3.18
2777 3271 2.028476 TGACCGTATTGTCAGGGTTCAG 60.028 50.000 0.00 0.00 40.22 3.02
2871 3365 0.777446 TTTGCCTCAAGGTTAGGGCT 59.223 50.000 0.00 0.00 44.36 5.19
2873 3367 0.909623 TGCCTCAAGGTTAGGGCTAC 59.090 55.000 0.00 0.00 44.36 3.58
2875 3369 0.464452 CCTCAAGGTTAGGGCTACCG 59.536 60.000 0.00 0.00 43.47 4.02
2878 3372 1.980036 TCAAGGTTAGGGCTACCGTTT 59.020 47.619 0.00 0.00 43.47 3.60
2929 3423 9.277783 GCTACAGTATAACTTGATCATGGAAAT 57.722 33.333 12.76 5.90 0.00 2.17
3009 3503 4.924305 ATTCATTCCCCAAATCATGACG 57.076 40.909 0.00 0.00 0.00 4.35
3028 3522 5.141910 TGACGTGTGGTTCTGGGATATATA 58.858 41.667 0.00 0.00 0.00 0.86
3029 3523 5.778241 TGACGTGTGGTTCTGGGATATATAT 59.222 40.000 0.00 0.00 0.00 0.86
3099 3593 5.841957 CCTTCTTATAAAGGCATGCTGTT 57.158 39.130 18.92 13.99 39.47 3.16
3102 3596 7.771183 CCTTCTTATAAAGGCATGCTGTTTTA 58.229 34.615 18.92 18.37 39.47 1.52
3143 3637 3.195610 TGTCTCCTCGATTGCTGTTGTAT 59.804 43.478 0.00 0.00 0.00 2.29
3144 3638 4.401202 TGTCTCCTCGATTGCTGTTGTATA 59.599 41.667 0.00 0.00 0.00 1.47
3498 3992 2.542824 CGTGGCGGAAACTGTTTTTGAT 60.543 45.455 7.28 0.00 0.00 2.57
3804 4298 0.607620 GTGGCCAGGCTTATTTTGCA 59.392 50.000 5.11 0.00 0.00 4.08
3832 4326 4.483311 AGAAAATGGAACTAGTCGTCGTC 58.517 43.478 0.00 0.00 0.00 4.20
3854 4348 1.781025 CGACCCTTTTGTGAGCGCAA 61.781 55.000 11.47 0.00 0.00 4.85
3951 4445 3.874392 ATTGGTGAATTTGCAGGCTAC 57.126 42.857 0.00 0.00 0.00 3.58
3953 4447 2.161855 TGGTGAATTTGCAGGCTACAG 58.838 47.619 0.00 0.00 0.00 2.74
3955 4449 0.804364 TGAATTTGCAGGCTACAGCG 59.196 50.000 0.00 0.00 43.26 5.18
3960 4454 2.964389 GCAGGCTACAGCGCTAGC 60.964 66.667 21.44 21.44 43.26 3.42
4073 4567 4.288626 AGGCCACCATTTCAAGTACTAAGA 59.711 41.667 5.01 0.00 0.00 2.10
4094 4588 2.803956 ACCTAACACGTCGTTTCCAATG 59.196 45.455 0.00 0.00 39.14 2.82
4095 4589 2.412325 CCTAACACGTCGTTTCCAATGC 60.412 50.000 0.00 0.00 39.14 3.56
4160 4654 1.214062 GTCGTGGAGAGCACTGGAG 59.786 63.158 0.00 0.00 0.00 3.86
4463 4966 4.261825 CCCACATTTGTTTACGGTGTCAAT 60.262 41.667 0.00 0.00 0.00 2.57
4471 4974 8.563289 TTTGTTTACGGTGTCAATGAAAATAC 57.437 30.769 0.00 0.00 0.00 1.89
4472 4975 6.364261 TGTTTACGGTGTCAATGAAAATACG 58.636 36.000 0.00 0.00 0.00 3.06
4490 4993 8.882415 AAAATACGTACACACCAGATATTAGG 57.118 34.615 0.00 0.00 0.00 2.69
4500 5003 7.039152 ACACACCAGATATTAGGATCATCTCAG 60.039 40.741 0.00 0.00 0.00 3.35
4807 7533 6.657541 ACGTCCTGATTGTTACATTTGGTAAT 59.342 34.615 0.00 0.00 43.50 1.89
5107 7841 1.280998 GTGTACCCCTGGTAATGTGCT 59.719 52.381 0.00 0.00 40.12 4.40
5124 7859 4.136796 TGTGCTTTCAGTCAAGTTGCTAT 58.863 39.130 0.00 0.00 0.00 2.97
5558 8294 0.749091 TTTGATGCCGATGCTGGAGG 60.749 55.000 0.00 0.00 38.71 4.30
5807 8543 3.131223 TGATTGAGGAAGAGCTTCTACGG 59.869 47.826 9.82 0.00 39.45 4.02
5819 8555 2.939640 GCTTCTACGGCAGAAATGGGAA 60.940 50.000 3.70 0.00 42.76 3.97
5847 8583 1.452145 GAAAACACGGCCCTCTGCAA 61.452 55.000 0.00 0.00 43.89 4.08
5876 8673 8.542497 TTGTTACACCTTGTAAATACTGCTAG 57.458 34.615 0.38 0.00 43.57 3.42
5923 8720 4.855388 GCAAATGCTTATCAGTGTTGAGTG 59.145 41.667 0.00 0.00 35.87 3.51
6197 8997 3.733443 ACAAGTTCTGTTCATTTGCCC 57.267 42.857 0.00 0.00 32.99 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.457603 TGTTGGATTTCGACAACCCATTAG 59.542 41.667 12.47 0.00 44.72 1.73
3 4 2.819608 CTGTTGGATTTCGACAACCCAT 59.180 45.455 12.47 0.00 44.72 4.00
14 15 2.033299 CGAGTGTTGTGCTGTTGGATTT 59.967 45.455 0.00 0.00 0.00 2.17
23 24 1.299541 CCTGTTTCGAGTGTTGTGCT 58.700 50.000 0.00 0.00 0.00 4.40
24 25 0.317020 GCCTGTTTCGAGTGTTGTGC 60.317 55.000 0.00 0.00 0.00 4.57
67 68 4.095185 CCGTGTACTTTCTTTGGTTTGTGA 59.905 41.667 0.00 0.00 0.00 3.58
79 80 1.787012 TCTTTCGGCCGTGTACTTTC 58.213 50.000 27.15 0.00 0.00 2.62
113 114 5.497474 GGATCTGCTTTGTAAGAGGGTTAA 58.503 41.667 0.00 0.00 0.00 2.01
146 147 1.946768 CTTTGCCTTCTTCGTGTTCCA 59.053 47.619 0.00 0.00 0.00 3.53
152 153 1.680338 AGTTGCTTTGCCTTCTTCGT 58.320 45.000 0.00 0.00 0.00 3.85
165 166 0.824759 CCTTCGGTAGCCTAGTTGCT 59.175 55.000 0.00 0.00 45.38 3.91
167 168 2.376109 TCTCCTTCGGTAGCCTAGTTG 58.624 52.381 0.00 0.00 0.00 3.16
193 194 2.777692 TGGGGTTGTTCTCAGTTTCTCT 59.222 45.455 0.00 0.00 0.00 3.10
228 229 3.245016 TGTCGAGGAGTTTAGGTGTCCTA 60.245 47.826 0.00 0.00 41.00 2.94
229 230 2.169330 GTCGAGGAGTTTAGGTGTCCT 58.831 52.381 0.00 0.00 43.76 3.85
230 231 1.891150 TGTCGAGGAGTTTAGGTGTCC 59.109 52.381 0.00 0.00 0.00 4.02
263 265 0.665369 ACGCTTTGGTCGGTTCTACG 60.665 55.000 0.00 0.00 0.00 3.51
287 289 1.685765 TCCGATGTGGCTAGGCAGT 60.686 57.895 20.88 11.62 37.80 4.40
291 293 0.179073 CCTTGTCCGATGTGGCTAGG 60.179 60.000 0.00 0.00 37.80 3.02
301 303 2.055299 GGTGAAGACCCTTGTCCGA 58.945 57.895 0.00 0.00 42.81 4.55
322 324 0.895530 TCCTCTCCGCGTCAGAATTT 59.104 50.000 4.92 0.00 0.00 1.82
325 327 0.394488 ATCTCCTCTCCGCGTCAGAA 60.394 55.000 4.92 0.00 0.00 3.02
354 356 1.294138 CCGACCGCTAGGGAAAACA 59.706 57.895 8.65 0.00 43.47 2.83
415 434 9.760660 GTGTTTCATGTCATACTAAATTGACTC 57.239 33.333 4.86 0.00 42.17 3.36
420 439 6.657541 ACCGGTGTTTCATGTCATACTAAATT 59.342 34.615 6.12 0.00 0.00 1.82
470 489 2.679450 TGTCCATTTTACGAGTCACCG 58.321 47.619 0.00 0.00 0.00 4.94
534 553 1.429299 TCAGAGGAGGAGAGGACACAA 59.571 52.381 0.00 0.00 0.00 3.33
539 558 7.182749 TCAAAATAAAATCAGAGGAGGAGAGGA 59.817 37.037 0.00 0.00 0.00 3.71
540 559 7.341805 TCAAAATAAAATCAGAGGAGGAGAGG 58.658 38.462 0.00 0.00 0.00 3.69
541 560 8.798859 TTCAAAATAAAATCAGAGGAGGAGAG 57.201 34.615 0.00 0.00 0.00 3.20
542 561 7.337942 GCTTCAAAATAAAATCAGAGGAGGAGA 59.662 37.037 0.00 0.00 0.00 3.71
543 562 7.121759 TGCTTCAAAATAAAATCAGAGGAGGAG 59.878 37.037 0.00 0.00 0.00 3.69
584 620 4.252878 GTTCTTCCCCCGATAAACGTAAA 58.747 43.478 0.00 0.00 40.78 2.01
586 622 2.830923 TGTTCTTCCCCCGATAAACGTA 59.169 45.455 0.00 0.00 40.78 3.57
629 665 4.279922 CCGTTTATGAACACCCTCCTTTTT 59.720 41.667 0.95 0.00 35.44 1.94
630 666 3.824443 CCGTTTATGAACACCCTCCTTTT 59.176 43.478 0.95 0.00 35.44 2.27
631 667 3.418047 CCGTTTATGAACACCCTCCTTT 58.582 45.455 0.95 0.00 35.44 3.11
632 668 2.290705 CCCGTTTATGAACACCCTCCTT 60.291 50.000 0.95 0.00 35.44 3.36
633 669 1.280998 CCCGTTTATGAACACCCTCCT 59.719 52.381 0.95 0.00 35.44 3.69
634 670 1.680860 CCCCGTTTATGAACACCCTCC 60.681 57.143 0.95 0.00 35.44 4.30
654 690 6.092122 TCGGATCAAAATCGATTACCATATGC 59.908 38.462 11.83 5.84 32.24 3.14
657 693 6.755206 ACTCGGATCAAAATCGATTACCATA 58.245 36.000 11.83 0.00 32.24 2.74
658 694 5.611374 ACTCGGATCAAAATCGATTACCAT 58.389 37.500 11.83 3.28 32.24 3.55
676 712 4.358494 AGACTTTCACTCGATTACTCGG 57.642 45.455 2.41 0.00 45.10 4.63
701 737 2.091665 ACAAGTTGGATCCATCCCATCC 60.092 50.000 17.06 0.00 46.59 3.51
702 738 3.303351 ACAAGTTGGATCCATCCCATC 57.697 47.619 17.06 2.67 46.59 3.51
706 742 3.644966 TGGTACAAGTTGGATCCATCC 57.355 47.619 17.06 9.60 41.39 3.51
721 757 6.018180 GGTCACTCGGATCAATTATTTGGTAC 60.018 42.308 0.00 0.00 33.44 3.34
730 766 3.760693 CGGGTCACTCGGATCAATT 57.239 52.632 0.00 0.00 0.00 2.32
741 777 0.608035 TGAATTTCAGCCCGGGTCAC 60.608 55.000 24.63 5.20 0.00 3.67
751 787 4.050852 GGCAAGGCCTTATGAATTTCAG 57.949 45.455 20.00 2.40 46.69 3.02
768 804 1.810031 CGGAGAAACTGTCAGTGGCAA 60.810 52.381 6.18 0.00 0.00 4.52
772 808 2.554462 TCTCTCGGAGAAACTGTCAGTG 59.446 50.000 6.18 0.00 35.59 3.66
776 812 2.814919 TCTGTCTCTCGGAGAAACTGTC 59.185 50.000 12.36 0.00 40.59 3.51
793 829 1.589414 CCCTTCCTCCATTCCTCTGT 58.411 55.000 0.00 0.00 0.00 3.41
799 835 1.697284 GAATGCCCCTTCCTCCATTC 58.303 55.000 0.00 0.00 37.48 2.67
801 837 1.533711 CGAATGCCCCTTCCTCCAT 59.466 57.895 0.00 0.00 0.00 3.41
834 870 3.179265 CGTCGACGTGGATGGCAC 61.179 66.667 29.08 0.00 34.11 5.01
846 882 2.640989 CCCAACAGTCGTCGTCGA 59.359 61.111 0.00 0.00 44.12 4.20
847 883 2.430244 CCCCAACAGTCGTCGTCG 60.430 66.667 0.00 0.00 38.55 5.12
899 941 0.454452 GCGGGATGCGTTTGAGTTTC 60.454 55.000 0.00 0.00 0.00 2.78
927 969 2.559998 ACGGTTGTCAGTTGCTTTTG 57.440 45.000 0.00 0.00 0.00 2.44
931 973 2.614829 AGTTACGGTTGTCAGTTGCT 57.385 45.000 0.00 0.00 0.00 3.91
932 974 3.059393 GGTTAGTTACGGTTGTCAGTTGC 60.059 47.826 0.00 0.00 0.00 4.17
933 975 3.182972 CGGTTAGTTACGGTTGTCAGTTG 59.817 47.826 0.00 0.00 0.00 3.16
935 977 2.362077 ACGGTTAGTTACGGTTGTCAGT 59.638 45.455 0.00 0.00 37.01 3.41
936 978 3.017265 ACGGTTAGTTACGGTTGTCAG 57.983 47.619 0.00 0.00 37.01 3.51
937 979 4.202060 TGTTACGGTTAGTTACGGTTGTCA 60.202 41.667 0.00 0.00 40.38 3.58
938 980 4.295051 TGTTACGGTTAGTTACGGTTGTC 58.705 43.478 0.00 0.00 40.38 3.18
939 981 4.037446 TCTGTTACGGTTAGTTACGGTTGT 59.963 41.667 0.00 0.00 39.18 3.32
940 982 4.545610 TCTGTTACGGTTAGTTACGGTTG 58.454 43.478 0.00 0.00 39.18 3.77
941 983 4.846779 TCTGTTACGGTTAGTTACGGTT 57.153 40.909 0.00 0.00 39.18 4.44
942 984 4.846779 TTCTGTTACGGTTAGTTACGGT 57.153 40.909 0.00 0.00 39.18 4.83
943 985 4.800471 GGATTCTGTTACGGTTAGTTACGG 59.200 45.833 0.00 0.00 39.42 4.02
944 986 4.800471 GGGATTCTGTTACGGTTAGTTACG 59.200 45.833 0.00 0.00 35.31 3.18
945 987 5.970592 AGGGATTCTGTTACGGTTAGTTAC 58.029 41.667 0.00 0.00 33.35 2.50
946 988 6.610075 AAGGGATTCTGTTACGGTTAGTTA 57.390 37.500 0.00 0.00 0.00 2.24
947 989 5.494390 AAGGGATTCTGTTACGGTTAGTT 57.506 39.130 0.00 0.00 0.00 2.24
948 990 5.247792 AGAAAGGGATTCTGTTACGGTTAGT 59.752 40.000 0.00 0.00 46.71 2.24
949 991 5.731591 AGAAAGGGATTCTGTTACGGTTAG 58.268 41.667 0.00 0.00 46.71 2.34
950 992 5.750352 AGAAAGGGATTCTGTTACGGTTA 57.250 39.130 0.00 0.00 46.71 2.85
1039 1081 3.917760 CCCCGTCGAGGAGGATGC 61.918 72.222 6.70 0.00 45.00 3.91
1041 1083 2.123812 GACCCCGTCGAGGAGGAT 60.124 66.667 13.01 0.00 45.00 3.24
1626 1778 2.028287 GCATGCGTATGTGCTTGATC 57.972 50.000 15.13 0.00 41.18 2.92
1659 1811 9.827411 GACATTTTAGGAAGTCAGTCAAATAAC 57.173 33.333 0.00 0.00 0.00 1.89
1662 1814 9.442047 CTAGACATTTTAGGAAGTCAGTCAAAT 57.558 33.333 0.00 0.00 33.56 2.32
1678 1830 3.057033 ACACGTACGGAGCTAGACATTTT 60.057 43.478 21.06 0.00 0.00 1.82
1682 1834 1.081892 GACACGTACGGAGCTAGACA 58.918 55.000 21.06 0.00 0.00 3.41
1683 1835 1.062294 CAGACACGTACGGAGCTAGAC 59.938 57.143 21.06 2.83 0.00 2.59
1725 1877 0.834612 TTGACAAACCAGGGAGACGT 59.165 50.000 0.00 0.00 0.00 4.34
1726 1878 1.806542 CATTGACAAACCAGGGAGACG 59.193 52.381 0.00 0.00 0.00 4.18
1727 1879 3.077359 CTCATTGACAAACCAGGGAGAC 58.923 50.000 0.00 0.00 0.00 3.36
1728 1880 2.711009 ACTCATTGACAAACCAGGGAGA 59.289 45.455 0.00 0.00 0.00 3.71
1731 1883 3.004734 GTGAACTCATTGACAAACCAGGG 59.995 47.826 0.00 0.00 0.00 4.45
1732 1884 3.004734 GGTGAACTCATTGACAAACCAGG 59.995 47.826 0.00 0.00 0.00 4.45
1733 1885 3.004734 GGGTGAACTCATTGACAAACCAG 59.995 47.826 5.55 0.00 0.00 4.00
1735 1887 3.004734 CAGGGTGAACTCATTGACAAACC 59.995 47.826 0.00 0.00 0.00 3.27
1737 1889 3.897239 ACAGGGTGAACTCATTGACAAA 58.103 40.909 0.00 0.00 0.00 2.83
1739 1891 3.576078 AACAGGGTGAACTCATTGACA 57.424 42.857 0.00 0.00 0.00 3.58
1740 1892 3.058914 CGAAACAGGGTGAACTCATTGAC 60.059 47.826 0.00 0.00 0.00 3.18
1741 1893 3.138304 CGAAACAGGGTGAACTCATTGA 58.862 45.455 0.00 0.00 0.00 2.57
1742 1894 2.350772 GCGAAACAGGGTGAACTCATTG 60.351 50.000 0.00 0.00 0.00 2.82
1743 1895 1.880027 GCGAAACAGGGTGAACTCATT 59.120 47.619 0.00 0.00 0.00 2.57
1744 1896 1.072331 AGCGAAACAGGGTGAACTCAT 59.928 47.619 0.00 0.00 0.00 2.90
1746 1898 0.868406 CAGCGAAACAGGGTGAACTC 59.132 55.000 0.00 0.00 34.96 3.01
1755 1913 3.789756 GCATTCATTCATCAGCGAAACAG 59.210 43.478 0.00 0.00 0.00 3.16
1798 1962 7.919385 ATTCTTCCATTAGCCACCAATTAAT 57.081 32.000 0.00 0.00 0.00 1.40
1799 1963 7.732222 AATTCTTCCATTAGCCACCAATTAA 57.268 32.000 0.00 0.00 0.00 1.40
1800 1964 8.691797 GTTAATTCTTCCATTAGCCACCAATTA 58.308 33.333 0.00 0.00 0.00 1.40
1801 1965 7.555965 GTTAATTCTTCCATTAGCCACCAATT 58.444 34.615 0.00 0.00 0.00 2.32
1827 1991 5.748152 GTGACTAGAATCTGATGCACTTCTC 59.252 44.000 0.00 0.00 0.00 2.87
1937 2125 7.083875 TGATTTGGAGAATGGACGTTAATTC 57.916 36.000 13.46 13.46 33.77 2.17
1942 2130 5.357032 GGTTATGATTTGGAGAATGGACGTT 59.643 40.000 0.00 0.00 0.00 3.99
1957 2145 3.517901 TCCGAGAACCACAGGTTATGATT 59.482 43.478 0.13 0.00 46.95 2.57
1961 2149 3.370527 CCAATCCGAGAACCACAGGTTAT 60.371 47.826 0.67 0.00 46.95 1.89
1981 2169 2.858787 AAGGGTTCAAAAAGGGACCA 57.141 45.000 0.00 0.00 33.81 4.02
2073 2265 4.042062 ACAGCAGCTATCCAGGCATTAATA 59.958 41.667 0.00 0.00 0.00 0.98
2125 2515 8.664669 AATTAATAACTCATTGACAAAGGGGT 57.335 30.769 0.00 0.00 30.32 4.95
2126 2516 8.971073 AGAATTAATAACTCATTGACAAAGGGG 58.029 33.333 0.00 0.00 0.00 4.79
2146 2536 9.871238 ACTTGCTCTTATTTCTAACGAGAATTA 57.129 29.630 0.00 0.00 41.40 1.40
2147 2537 8.779354 ACTTGCTCTTATTTCTAACGAGAATT 57.221 30.769 0.00 0.00 41.40 2.17
2168 2558 5.455392 CAGAGTTGGACATAGCAAAACTTG 58.545 41.667 0.00 0.00 31.45 3.16
2169 2559 4.022849 GCAGAGTTGGACATAGCAAAACTT 60.023 41.667 0.00 0.00 31.45 2.66
2170 2560 3.503748 GCAGAGTTGGACATAGCAAAACT 59.496 43.478 0.00 0.00 33.91 2.66
2171 2561 3.366374 GGCAGAGTTGGACATAGCAAAAC 60.366 47.826 0.00 0.00 0.00 2.43
2172 2562 2.819608 GGCAGAGTTGGACATAGCAAAA 59.180 45.455 0.00 0.00 0.00 2.44
2173 2563 2.040278 AGGCAGAGTTGGACATAGCAAA 59.960 45.455 0.00 0.00 0.00 3.68
2174 2564 1.630369 AGGCAGAGTTGGACATAGCAA 59.370 47.619 0.00 0.00 0.00 3.91
2175 2565 1.065926 CAGGCAGAGTTGGACATAGCA 60.066 52.381 0.00 0.00 0.00 3.49
2176 2566 1.661341 CAGGCAGAGTTGGACATAGC 58.339 55.000 0.00 0.00 0.00 2.97
2177 2567 1.209019 AGCAGGCAGAGTTGGACATAG 59.791 52.381 0.00 0.00 0.00 2.23
2178 2568 1.065926 CAGCAGGCAGAGTTGGACATA 60.066 52.381 0.00 0.00 0.00 2.29
2179 2569 0.322277 CAGCAGGCAGAGTTGGACAT 60.322 55.000 0.00 0.00 0.00 3.06
2180 2570 1.071987 CAGCAGGCAGAGTTGGACA 59.928 57.895 0.00 0.00 0.00 4.02
2181 2571 0.536006 AACAGCAGGCAGAGTTGGAC 60.536 55.000 0.00 0.00 0.00 4.02
2182 2572 0.183492 AAACAGCAGGCAGAGTTGGA 59.817 50.000 0.00 0.00 0.00 3.53
2183 2573 0.313043 CAAACAGCAGGCAGAGTTGG 59.687 55.000 0.00 0.00 0.00 3.77
2184 2574 0.313043 CCAAACAGCAGGCAGAGTTG 59.687 55.000 0.00 0.00 0.00 3.16
2185 2575 0.183492 TCCAAACAGCAGGCAGAGTT 59.817 50.000 0.00 0.00 0.00 3.01
2186 2576 0.183492 TTCCAAACAGCAGGCAGAGT 59.817 50.000 0.00 0.00 0.00 3.24
2187 2577 1.321474 TTTCCAAACAGCAGGCAGAG 58.679 50.000 0.00 0.00 0.00 3.35
2188 2578 1.999648 ATTTCCAAACAGCAGGCAGA 58.000 45.000 0.00 0.00 0.00 4.26
2189 2579 3.578688 GTTATTTCCAAACAGCAGGCAG 58.421 45.455 0.00 0.00 0.00 4.85
2190 2580 2.298729 GGTTATTTCCAAACAGCAGGCA 59.701 45.455 0.00 0.00 0.00 4.75
2191 2581 2.562738 AGGTTATTTCCAAACAGCAGGC 59.437 45.455 0.00 0.00 0.00 4.85
2192 2582 4.871933 AAGGTTATTTCCAAACAGCAGG 57.128 40.909 0.00 0.00 0.00 4.85
2193 2583 7.378181 ACAATAAGGTTATTTCCAAACAGCAG 58.622 34.615 0.00 0.00 31.28 4.24
2194 2584 7.296628 ACAATAAGGTTATTTCCAAACAGCA 57.703 32.000 0.00 0.00 31.28 4.41
2195 2585 8.601845 AAACAATAAGGTTATTTCCAAACAGC 57.398 30.769 0.00 0.00 31.28 4.40
2196 2586 9.981114 AGAAACAATAAGGTTATTTCCAAACAG 57.019 29.630 0.00 0.00 31.28 3.16
2199 2589 9.267084 GCAAGAAACAATAAGGTTATTTCCAAA 57.733 29.630 0.00 0.00 31.28 3.28
2200 2590 8.424918 TGCAAGAAACAATAAGGTTATTTCCAA 58.575 29.630 0.00 0.00 31.28 3.53
2201 2591 7.957002 TGCAAGAAACAATAAGGTTATTTCCA 58.043 30.769 0.00 0.00 31.28 3.53
2202 2592 9.087424 GATGCAAGAAACAATAAGGTTATTTCC 57.913 33.333 0.00 0.00 31.28 3.13
2203 2593 9.638239 TGATGCAAGAAACAATAAGGTTATTTC 57.362 29.630 0.00 0.00 31.28 2.17
2204 2594 9.643693 CTGATGCAAGAAACAATAAGGTTATTT 57.356 29.630 0.00 0.00 31.28 1.40
2205 2595 8.253113 CCTGATGCAAGAAACAATAAGGTTATT 58.747 33.333 0.00 0.00 33.82 1.40
2206 2596 7.147846 CCCTGATGCAAGAAACAATAAGGTTAT 60.148 37.037 0.00 0.00 0.00 1.89
2207 2597 6.152661 CCCTGATGCAAGAAACAATAAGGTTA 59.847 38.462 0.00 0.00 0.00 2.85
2208 2598 5.047092 CCCTGATGCAAGAAACAATAAGGTT 60.047 40.000 0.00 0.00 0.00 3.50
2209 2599 4.463891 CCCTGATGCAAGAAACAATAAGGT 59.536 41.667 0.00 0.00 0.00 3.50
2210 2600 4.706476 TCCCTGATGCAAGAAACAATAAGG 59.294 41.667 0.00 0.00 0.00 2.69
2211 2601 5.902613 TCCCTGATGCAAGAAACAATAAG 57.097 39.130 0.00 0.00 0.00 1.73
2212 2602 6.009589 TCTTCCCTGATGCAAGAAACAATAA 58.990 36.000 0.00 0.00 0.00 1.40
2213 2603 5.569355 TCTTCCCTGATGCAAGAAACAATA 58.431 37.500 0.00 0.00 0.00 1.90
2214 2604 4.410099 TCTTCCCTGATGCAAGAAACAAT 58.590 39.130 0.00 0.00 0.00 2.71
2215 2605 3.831323 TCTTCCCTGATGCAAGAAACAA 58.169 40.909 0.00 0.00 0.00 2.83
2216 2606 3.507162 TCTTCCCTGATGCAAGAAACA 57.493 42.857 0.00 0.00 0.00 2.83
2217 2607 3.823304 AGTTCTTCCCTGATGCAAGAAAC 59.177 43.478 0.00 0.00 37.77 2.78
2218 2608 4.104383 AGTTCTTCCCTGATGCAAGAAA 57.896 40.909 0.00 0.00 37.77 2.52
2219 2609 3.795688 AGTTCTTCCCTGATGCAAGAA 57.204 42.857 0.00 0.00 34.47 2.52
2220 2610 3.679389 GAAGTTCTTCCCTGATGCAAGA 58.321 45.455 0.00 0.00 0.00 3.02
2221 2611 2.417933 CGAAGTTCTTCCCTGATGCAAG 59.582 50.000 0.56 0.00 0.00 4.01
2222 2612 2.426522 CGAAGTTCTTCCCTGATGCAA 58.573 47.619 0.56 0.00 0.00 4.08
2223 2613 1.945819 GCGAAGTTCTTCCCTGATGCA 60.946 52.381 0.56 0.00 0.00 3.96
2224 2614 0.729690 GCGAAGTTCTTCCCTGATGC 59.270 55.000 0.56 0.81 0.00 3.91
2225 2615 1.339055 TGGCGAAGTTCTTCCCTGATG 60.339 52.381 15.54 2.07 0.00 3.07
2226 2616 0.984230 TGGCGAAGTTCTTCCCTGAT 59.016 50.000 15.54 0.00 0.00 2.90
2227 2617 0.984230 ATGGCGAAGTTCTTCCCTGA 59.016 50.000 15.54 3.75 0.00 3.86
2228 2618 1.065854 AGATGGCGAAGTTCTTCCCTG 60.066 52.381 15.54 3.12 0.00 4.45
2229 2619 1.280457 AGATGGCGAAGTTCTTCCCT 58.720 50.000 15.54 0.00 0.00 4.20
2230 2620 2.115343 AAGATGGCGAAGTTCTTCCC 57.885 50.000 0.56 9.16 0.00 3.97
2231 2621 3.074412 TGAAAGATGGCGAAGTTCTTCC 58.926 45.455 0.56 2.92 0.00 3.46
2232 2622 4.954092 ATGAAAGATGGCGAAGTTCTTC 57.046 40.909 0.56 2.80 0.00 2.87
2233 2623 4.761739 TCAATGAAAGATGGCGAAGTTCTT 59.238 37.500 0.56 0.00 0.00 2.52
2234 2624 4.326826 TCAATGAAAGATGGCGAAGTTCT 58.673 39.130 0.56 0.00 0.00 3.01
2235 2625 4.685169 TCAATGAAAGATGGCGAAGTTC 57.315 40.909 0.00 0.00 0.00 3.01
2236 2626 4.701651 TCATCAATGAAAGATGGCGAAGTT 59.298 37.500 0.00 0.00 42.38 2.66
2237 2627 4.264253 TCATCAATGAAAGATGGCGAAGT 58.736 39.130 0.00 0.00 42.38 3.01
2238 2628 4.888038 TCATCAATGAAAGATGGCGAAG 57.112 40.909 0.00 0.00 42.38 3.79
2262 2652 7.831193 AGGCACTAGTTCTGACAATATTTTCAT 59.169 33.333 4.81 0.00 36.02 2.57
2263 2653 7.168219 AGGCACTAGTTCTGACAATATTTTCA 58.832 34.615 4.32 4.32 36.02 2.69
2264 2654 7.617041 AGGCACTAGTTCTGACAATATTTTC 57.383 36.000 0.00 0.00 36.02 2.29
2265 2655 9.686683 ATTAGGCACTAGTTCTGACAATATTTT 57.313 29.630 0.00 0.00 44.25 1.82
2266 2656 9.113838 CATTAGGCACTAGTTCTGACAATATTT 57.886 33.333 0.00 0.00 44.25 1.40
2267 2657 7.716998 CCATTAGGCACTAGTTCTGACAATATT 59.283 37.037 0.00 0.00 44.25 1.28
2268 2658 7.071196 TCCATTAGGCACTAGTTCTGACAATAT 59.929 37.037 0.00 0.00 44.25 1.28
2270 2660 5.189736 TCCATTAGGCACTAGTTCTGACAAT 59.810 40.000 0.00 0.00 44.25 2.71
2271 2661 4.530553 TCCATTAGGCACTAGTTCTGACAA 59.469 41.667 0.00 0.00 44.25 3.18
2272 2662 4.093743 TCCATTAGGCACTAGTTCTGACA 58.906 43.478 0.00 0.00 44.25 3.58
2273 2663 4.737855 TCCATTAGGCACTAGTTCTGAC 57.262 45.455 0.00 0.00 44.25 3.51
2274 2664 4.962362 TCATCCATTAGGCACTAGTTCTGA 59.038 41.667 0.00 0.00 44.25 3.27
2277 2667 6.291377 TCATTCATCCATTAGGCACTAGTTC 58.709 40.000 0.00 0.00 44.25 3.01
2278 2668 6.252599 TCATTCATCCATTAGGCACTAGTT 57.747 37.500 0.00 0.00 44.25 2.24
2280 2670 6.057533 TGTTCATTCATCCATTAGGCACTAG 58.942 40.000 0.00 0.00 44.25 2.57
2281 2671 6.000246 TGTTCATTCATCCATTAGGCACTA 58.000 37.500 0.00 0.00 41.75 2.74
2282 2672 4.858850 TGTTCATTCATCCATTAGGCACT 58.141 39.130 0.00 0.00 46.37 4.40
2285 2675 6.038356 CACTTTGTTCATTCATCCATTAGGC 58.962 40.000 0.00 0.00 33.74 3.93
2286 2676 6.038356 GCACTTTGTTCATTCATCCATTAGG 58.962 40.000 0.00 0.00 0.00 2.69
2295 2694 7.092079 CCAATCTAATGCACTTTGTTCATTCA 58.908 34.615 0.00 0.00 32.41 2.57
2296 2695 6.532657 CCCAATCTAATGCACTTTGTTCATTC 59.467 38.462 0.00 0.00 32.41 2.67
2300 2699 5.391312 ACCCAATCTAATGCACTTTGTTC 57.609 39.130 0.00 0.00 0.00 3.18
2304 2703 4.046286 TGGACCCAATCTAATGCACTTT 57.954 40.909 0.00 0.00 0.00 2.66
2313 2712 6.575244 ACTCATGTTAATGGACCCAATCTA 57.425 37.500 0.00 0.00 34.30 1.98
2319 2718 7.823745 ATTGATTACTCATGTTAATGGACCC 57.176 36.000 6.96 0.00 34.30 4.46
2332 2731 7.345691 TGAGGCAGGAATTAATTGATTACTCA 58.654 34.615 5.17 10.55 27.44 3.41
2334 2733 7.286316 CCTTGAGGCAGGAATTAATTGATTACT 59.714 37.037 5.17 1.84 35.71 2.24
2335 2734 7.068716 ACCTTGAGGCAGGAATTAATTGATTAC 59.931 37.037 5.17 0.00 39.32 1.89
2338 2739 5.522641 ACCTTGAGGCAGGAATTAATTGAT 58.477 37.500 5.17 0.00 39.32 2.57
2342 2743 5.449553 CCTAACCTTGAGGCAGGAATTAAT 58.550 41.667 11.20 0.00 41.08 1.40
2343 2744 4.325030 CCCTAACCTTGAGGCAGGAATTAA 60.325 45.833 16.22 0.00 41.08 1.40
2346 2747 1.566231 CCCTAACCTTGAGGCAGGAAT 59.434 52.381 16.22 0.00 41.08 3.01
2350 2751 4.645809 GCCCTAACCTTGAGGCAG 57.354 61.111 0.00 0.00 45.07 4.85
2370 2771 6.282930 AGCAAATTGAGCAAACAGTAAATGT 58.717 32.000 0.00 0.00 46.97 2.71
2371 2772 6.774354 AGCAAATTGAGCAAACAGTAAATG 57.226 33.333 0.00 0.00 0.00 2.32
2372 2773 7.661040 ACTAGCAAATTGAGCAAACAGTAAAT 58.339 30.769 0.00 0.00 0.00 1.40
2373 2774 7.038154 ACTAGCAAATTGAGCAAACAGTAAA 57.962 32.000 0.00 0.00 0.00 2.01
2374 2775 6.633500 ACTAGCAAATTGAGCAAACAGTAA 57.367 33.333 0.00 0.00 0.00 2.24
2375 2776 6.633500 AACTAGCAAATTGAGCAAACAGTA 57.367 33.333 0.00 0.00 0.00 2.74
2376 2777 5.520376 AACTAGCAAATTGAGCAAACAGT 57.480 34.783 0.00 1.55 0.00 3.55
2395 2796 9.973450 CATGATCAAGTTATACTGTAGCTAACT 57.027 33.333 0.00 7.64 37.31 2.24
2411 2812 4.766891 ACAACCGAATTTCCATGATCAAGT 59.233 37.500 0.00 0.00 0.00 3.16
2420 2821 5.521906 TCAAATTGACAACCGAATTTCCA 57.478 34.783 0.00 0.00 30.94 3.53
2426 2827 7.158697 TCTTCTCTATCAAATTGACAACCGAA 58.841 34.615 0.00 0.00 0.00 4.30
2430 2831 8.457261 AGCATTCTTCTCTATCAAATTGACAAC 58.543 33.333 0.00 0.00 0.00 3.32
2432 2833 8.571461 AAGCATTCTTCTCTATCAAATTGACA 57.429 30.769 0.00 0.00 0.00 3.58
2463 2864 9.932207 TTAAGATTTGGAGAATGAACGTTAGTA 57.068 29.630 0.00 0.00 0.00 1.82
2464 2865 8.718734 GTTAAGATTTGGAGAATGAACGTTAGT 58.281 33.333 0.00 0.00 0.00 2.24
2465 2866 8.175716 GGTTAAGATTTGGAGAATGAACGTTAG 58.824 37.037 0.00 0.00 0.00 2.34
2470 2871 7.454260 ACAGGTTAAGATTTGGAGAATGAAC 57.546 36.000 0.00 0.00 0.00 3.18
2494 2895 4.445453 CAGCATGCCTGTTCAAGATACTA 58.555 43.478 15.66 0.00 36.79 1.82
2495 2896 3.276857 CAGCATGCCTGTTCAAGATACT 58.723 45.455 15.66 0.00 36.79 2.12
2496 2897 3.687572 CAGCATGCCTGTTCAAGATAC 57.312 47.619 15.66 0.00 36.79 2.24
2592 3057 6.959639 TCAATAACTCATTGATAAAGGGGC 57.040 37.500 0.00 0.00 46.48 5.80
2655 3124 1.412079 ATTTCCAAACAGCAGGCACA 58.588 45.000 0.00 0.00 0.00 4.57
2682 3151 6.874288 AGTTCTTCCTGATGAAAGAAACAG 57.126 37.500 0.00 0.00 31.06 3.16
2691 3160 1.623311 TGCCGAAGTTCTTCCTGATGA 59.377 47.619 0.56 0.00 0.00 2.92
2708 3178 2.478539 GCGTTCATGAAGGAAAGATGCC 60.479 50.000 27.70 7.23 0.00 4.40
2709 3179 2.789092 CGCGTTCATGAAGGAAAGATGC 60.789 50.000 27.70 12.78 0.00 3.91
2721 3191 3.722555 ACATGTTCTAACGCGTTCATG 57.277 42.857 32.61 32.61 38.65 3.07
2758 3252 1.338769 GCTGAACCCTGACAATACGGT 60.339 52.381 0.00 0.00 0.00 4.83
2760 3254 2.093306 TGCTGAACCCTGACAATACG 57.907 50.000 0.00 0.00 0.00 3.06
2852 3346 3.356814 GCCCTAACCTTGAGGCAAA 57.643 52.632 0.00 0.00 45.07 3.68
2871 3365 6.202937 CAAATTGAGCAAACAGTAAACGGTA 58.797 36.000 0.00 0.00 0.00 4.02
2873 3367 4.085107 GCAAATTGAGCAAACAGTAAACGG 60.085 41.667 0.00 0.00 0.00 4.44
2875 3369 6.918022 ACTAGCAAATTGAGCAAACAGTAAAC 59.082 34.615 0.00 0.00 0.00 2.01
2878 3372 6.633500 AACTAGCAAATTGAGCAAACAGTA 57.367 33.333 0.00 0.00 0.00 2.74
2995 3489 0.810648 CCACACGTCATGATTTGGGG 59.189 55.000 12.15 12.15 0.00 4.96
2996 3490 1.533625 ACCACACGTCATGATTTGGG 58.466 50.000 15.37 9.75 0.00 4.12
2997 3491 2.813754 AGAACCACACGTCATGATTTGG 59.186 45.455 0.00 6.02 0.00 3.28
3009 3503 7.259088 AGGAATATATATCCCAGAACCACAC 57.741 40.000 0.30 0.00 37.71 3.82
3028 3522 3.689649 CCTCGGATCGTTCAAAAAGGAAT 59.310 43.478 0.00 0.00 33.34 3.01
3029 3523 3.071479 CCTCGGATCGTTCAAAAAGGAA 58.929 45.455 0.00 0.00 33.34 3.36
3078 3572 9.807649 AATAAAACAGCATGCCTTTATAAGAAG 57.192 29.630 21.25 2.18 42.53 2.85
3102 3596 8.514504 AGGAGACAATTTATCCCCTGATTTAAT 58.485 33.333 0.00 0.00 33.30 1.40
3498 3992 3.008375 ACTCAAAACTCCTATGCTGCTCA 59.992 43.478 0.00 0.00 0.00 4.26
3804 4298 4.452455 CGACTAGTTCCATTTTCTTGCTGT 59.548 41.667 0.00 0.00 0.00 4.40
3814 4308 3.572584 GTTGACGACGACTAGTTCCATT 58.427 45.455 0.00 0.00 0.00 3.16
3832 4326 0.041312 CGCTCACAAAAGGGTCGTTG 60.041 55.000 0.00 0.00 0.00 4.10
3845 4339 2.336554 ACAATGTCATTTGCGCTCAC 57.663 45.000 9.73 0.00 0.00 3.51
3951 4445 3.634072 GCATGTCCGCTAGCGCTG 61.634 66.667 31.35 23.03 38.24 5.18
3953 4447 4.899239 AGGCATGTCCGCTAGCGC 62.899 66.667 31.35 18.99 40.77 5.92
3955 4449 2.280457 GGAGGCATGTCCGCTAGC 60.280 66.667 4.06 4.06 40.77 3.42
3960 4454 2.620251 TAAATCAGGAGGCATGTCCG 57.380 50.000 0.00 0.00 42.05 4.79
4073 4567 2.600470 TTGGAAACGACGTGTTAGGT 57.400 45.000 0.00 0.00 40.84 3.08
4160 4654 3.797256 GCAGTATCCGTGTCAGTGAATAC 59.203 47.826 0.00 0.00 0.00 1.89
4463 4966 9.524106 CTAATATCTGGTGTGTACGTATTTTCA 57.476 33.333 0.00 0.00 0.00 2.69
4471 4974 6.327279 TGATCCTAATATCTGGTGTGTACG 57.673 41.667 0.00 0.00 0.00 3.67
4472 4975 8.128322 AGATGATCCTAATATCTGGTGTGTAC 57.872 38.462 0.00 0.00 30.41 2.90
4490 4993 3.986572 CGGTATCAGCAACTGAGATGATC 59.013 47.826 8.38 0.00 44.08 2.92
4500 5003 4.142687 ACAAATTGTAGCGGTATCAGCAAC 60.143 41.667 0.00 0.00 37.01 4.17
4773 7499 2.224281 ACAATCAGGACGTCTGCTGAAA 60.224 45.455 22.79 7.03 46.83 2.69
4807 7533 1.372683 GGAACTGAGTGCCTGCAGA 59.627 57.895 17.39 0.00 36.07 4.26
5107 7841 8.097038 ACAGAGATAATAGCAACTTGACTGAAA 58.903 33.333 0.00 0.00 0.00 2.69
5124 7859 8.934023 AAAAATGTACTTGGGAACAGAGATAA 57.066 30.769 0.00 0.00 44.54 1.75
5235 7970 6.792326 TCATACATACAAGACAAGGAGTACG 58.208 40.000 0.00 0.00 0.00 3.67
5558 8294 1.153229 GAACCGTCCCCCAGCATAC 60.153 63.158 0.00 0.00 0.00 2.39
5807 8543 6.575162 TTCTAAACTCTTTCCCATTTCTGC 57.425 37.500 0.00 0.00 0.00 4.26
5819 8555 2.882761 GGGCCGTGTTTTCTAAACTCTT 59.117 45.455 0.00 0.00 0.00 2.85
5847 8583 7.255346 GCAGTATTTACAAGGTGTAACAAAGGT 60.255 37.037 0.38 0.00 41.97 3.50
5876 8673 2.689646 GTCAGTACAAGCAGAGGAACC 58.310 52.381 0.00 0.00 0.00 3.62
5923 8720 3.175152 CGTCTCTTCTCATGTGTGTAGC 58.825 50.000 0.00 0.00 0.00 3.58
6069 8869 2.279582 AAGACTCTACACGGCAATCG 57.720 50.000 0.00 0.00 45.88 3.34
6653 9640 4.524802 ATGTTGAATAGGAATGGGCTCA 57.475 40.909 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.