Multiple sequence alignment - TraesCS3B01G076000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G076000 chr3B 100.000 2699 0 0 1 2699 46903103 46905801 0.000000e+00 4985.0
1 TraesCS3B01G076000 chr3B 95.360 1681 34 4 1019 2699 46932191 46933827 0.000000e+00 2632.0
2 TraesCS3B01G076000 chr3B 87.133 1158 103 11 665 1798 46033663 46032528 0.000000e+00 1271.0
3 TraesCS3B01G076000 chr3B 88.757 676 47 5 518 1188 46792978 46793629 0.000000e+00 800.0
4 TraesCS3B01G076000 chr3B 80.873 481 67 22 56 523 605906402 605906870 3.310000e-94 355.0
5 TraesCS3B01G076000 chr3B 100.000 155 0 0 665 819 46932038 46932192 1.220000e-73 287.0
6 TraesCS3B01G076000 chr3B 83.158 95 14 2 430 522 765559850 765559756 4.790000e-13 86.1
7 TraesCS3B01G076000 chr3B 76.440 191 22 17 1800 1987 814850204 814850374 6.190000e-12 82.4
8 TraesCS3B01G076000 chr3A 91.259 1144 79 7 530 1652 37827876 37826733 0.000000e+00 1539.0
9 TraesCS3B01G076000 chr3A 87.424 1145 121 14 665 1798 37651538 37650406 0.000000e+00 1295.0
10 TraesCS3B01G076000 chr3A 80.849 1060 100 34 810 1798 38124779 38125806 0.000000e+00 737.0
11 TraesCS3B01G076000 chr3A 80.793 479 67 21 56 519 715384774 715385242 4.280000e-93 351.0
12 TraesCS3B01G076000 chr3A 82.609 92 14 2 430 519 30180962 30180871 2.230000e-11 80.5
13 TraesCS3B01G076000 chr3A 100.000 36 0 0 1813 1848 687484182 687484147 1.730000e-07 67.6
14 TraesCS3B01G076000 chr3D 90.917 1134 81 6 537 1649 27943621 27944753 0.000000e+00 1504.0
15 TraesCS3B01G076000 chr3D 88.707 1160 92 13 665 1798 27551516 27550370 0.000000e+00 1380.0
16 TraesCS3B01G076000 chr4D 87.833 600 58 10 2107 2698 51507101 51506509 0.000000e+00 689.0
17 TraesCS3B01G076000 chrUn 85.449 646 74 15 1022 1654 287642994 287642356 0.000000e+00 654.0
18 TraesCS3B01G076000 chrUn 84.295 312 34 6 1799 2095 117265531 117265842 9.450000e-75 291.0
19 TraesCS3B01G076000 chrUn 86.066 122 17 0 865 986 287643115 287642994 6.060000e-27 132.0
20 TraesCS3B01G076000 chr4B 92.124 419 28 3 2279 2693 642967235 642967652 1.080000e-163 586.0
21 TraesCS3B01G076000 chr4B 79.602 201 24 6 1886 2086 642966963 642967146 7.840000e-26 128.0
22 TraesCS3B01G076000 chr2B 91.529 425 31 3 2279 2698 639545776 639545352 5.010000e-162 580.0
23 TraesCS3B01G076000 chr2B 79.055 487 70 25 62 519 49493588 49493105 3.380000e-79 305.0
24 TraesCS3B01G076000 chr1B 92.327 391 21 5 2311 2697 565500048 565499663 5.080000e-152 547.0
25 TraesCS3B01G076000 chr1B 100.000 39 0 0 1799 1837 565500084 565500046 3.730000e-09 73.1
26 TraesCS3B01G076000 chr5B 88.605 430 38 6 2279 2698 691228523 691228095 1.850000e-141 512.0
27 TraesCS3B01G076000 chr5B 85.995 407 32 13 2297 2698 691560039 691559653 1.930000e-111 412.0
28 TraesCS3B01G076000 chr5B 87.464 351 26 5 2361 2695 533544595 533544943 3.260000e-104 388.0
29 TraesCS3B01G076000 chr5B 75.625 320 58 12 1793 2095 699981755 699981439 1.010000e-29 141.0
30 TraesCS3B01G076000 chr5B 73.643 258 56 10 1817 2069 535279607 535279357 3.700000e-14 89.8
31 TraesCS3B01G076000 chr2A 85.000 520 50 11 1 519 41229897 41229405 1.120000e-138 503.0
32 TraesCS3B01G076000 chr7D 85.455 440 39 8 2279 2698 554489162 554488728 4.130000e-118 435.0
33 TraesCS3B01G076000 chr7D 89.362 47 3 2 1799 1843 554498130 554498084 1.040000e-04 58.4
34 TraesCS3B01G076000 chr5A 85.156 384 52 4 1 381 52495584 52495203 3.260000e-104 388.0
35 TraesCS3B01G076000 chr5A 82.353 119 19 2 404 520 52486106 52485988 4.750000e-18 102.0
36 TraesCS3B01G076000 chr7A 83.292 407 59 7 2296 2698 666148474 666148073 1.530000e-97 366.0
37 TraesCS3B01G076000 chr7A 81.224 474 64 20 62 522 37283488 37283027 2.560000e-95 359.0
38 TraesCS3B01G076000 chr6B 79.430 491 60 32 62 519 666784449 666783967 2.610000e-80 309.0
39 TraesCS3B01G076000 chr1D 78.448 232 44 4 1817 2044 379781754 379781525 2.170000e-31 147.0
40 TraesCS3B01G076000 chr1A 81.308 107 15 4 415 519 562937828 562937931 6.190000e-12 82.4
41 TraesCS3B01G076000 chr1A 72.378 286 63 14 1817 2095 546984517 546984241 2.880000e-10 76.8
42 TraesCS3B01G076000 chr2D 79.612 103 18 3 419 519 646774114 646774215 1.340000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G076000 chr3B 46903103 46905801 2698 False 4985.0 4985 100.0000 1 2699 1 chr3B.!!$F2 2698
1 TraesCS3B01G076000 chr3B 46932038 46933827 1789 False 1459.5 2632 97.6800 665 2699 2 chr3B.!!$F5 2034
2 TraesCS3B01G076000 chr3B 46032528 46033663 1135 True 1271.0 1271 87.1330 665 1798 1 chr3B.!!$R1 1133
3 TraesCS3B01G076000 chr3B 46792978 46793629 651 False 800.0 800 88.7570 518 1188 1 chr3B.!!$F1 670
4 TraesCS3B01G076000 chr3A 37826733 37827876 1143 True 1539.0 1539 91.2590 530 1652 1 chr3A.!!$R3 1122
5 TraesCS3B01G076000 chr3A 37650406 37651538 1132 True 1295.0 1295 87.4240 665 1798 1 chr3A.!!$R2 1133
6 TraesCS3B01G076000 chr3A 38124779 38125806 1027 False 737.0 737 80.8490 810 1798 1 chr3A.!!$F1 988
7 TraesCS3B01G076000 chr3D 27943621 27944753 1132 False 1504.0 1504 90.9170 537 1649 1 chr3D.!!$F1 1112
8 TraesCS3B01G076000 chr3D 27550370 27551516 1146 True 1380.0 1380 88.7070 665 1798 1 chr3D.!!$R1 1133
9 TraesCS3B01G076000 chr4D 51506509 51507101 592 True 689.0 689 87.8330 2107 2698 1 chr4D.!!$R1 591
10 TraesCS3B01G076000 chrUn 287642356 287643115 759 True 393.0 654 85.7575 865 1654 2 chrUn.!!$R1 789
11 TraesCS3B01G076000 chr4B 642966963 642967652 689 False 357.0 586 85.8630 1886 2693 2 chr4B.!!$F1 807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 298 0.033991 TGACGAGGAGAGGAAGAGGG 60.034 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2288 2437 0.596859 GCTATGCCGACGGGTAAGTC 60.597 60.0 17.22 0.0 37.76 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.160047 CCATCTCCCTCCGCTGCT 61.160 66.667 0.00 0.00 0.00 4.24
18 19 2.420890 CATCTCCCTCCGCTGCTC 59.579 66.667 0.00 0.00 0.00 4.26
19 20 2.132996 CATCTCCCTCCGCTGCTCT 61.133 63.158 0.00 0.00 0.00 4.09
20 21 2.132996 ATCTCCCTCCGCTGCTCTG 61.133 63.158 0.00 0.00 0.00 3.35
21 22 3.847602 CTCCCTCCGCTGCTCTGG 61.848 72.222 0.00 0.00 0.00 3.86
44 45 4.767255 CACGAGGCCTGCCACTCC 62.767 72.222 12.00 0.00 38.92 3.85
46 47 4.767255 CGAGGCCTGCCACTCCAC 62.767 72.222 12.00 0.00 38.92 4.02
47 48 3.325753 GAGGCCTGCCACTCCACT 61.326 66.667 12.00 0.00 38.92 4.00
48 49 3.618780 GAGGCCTGCCACTCCACTG 62.619 68.421 12.00 0.00 38.92 3.66
51 52 4.729918 CCTGCCACTCCACTGCCC 62.730 72.222 0.00 0.00 0.00 5.36
52 53 4.729918 CTGCCACTCCACTGCCCC 62.730 72.222 0.00 0.00 0.00 5.80
55 56 4.394712 CCACTCCACTGCCCCGAC 62.395 72.222 0.00 0.00 0.00 4.79
56 57 4.742201 CACTCCACTGCCCCGACG 62.742 72.222 0.00 0.00 0.00 5.12
67 68 3.461773 CCCGACGCCTGTCCAGAT 61.462 66.667 0.00 0.00 42.37 2.90
68 69 2.105128 CCGACGCCTGTCCAGATC 59.895 66.667 0.00 0.00 42.37 2.75
69 70 2.105128 CGACGCCTGTCCAGATCC 59.895 66.667 0.00 0.00 42.37 3.36
70 71 2.105128 GACGCCTGTCCAGATCCG 59.895 66.667 0.00 0.00 39.30 4.18
71 72 4.148825 ACGCCTGTCCAGATCCGC 62.149 66.667 0.00 0.00 0.00 5.54
72 73 4.899239 CGCCTGTCCAGATCCGCC 62.899 72.222 0.00 0.00 0.00 6.13
73 74 4.899239 GCCTGTCCAGATCCGCCG 62.899 72.222 0.00 0.00 0.00 6.46
74 75 4.899239 CCTGTCCAGATCCGCCGC 62.899 72.222 0.00 0.00 0.00 6.53
75 76 3.842923 CTGTCCAGATCCGCCGCT 61.843 66.667 0.00 0.00 0.00 5.52
76 77 3.781770 CTGTCCAGATCCGCCGCTC 62.782 68.421 0.00 0.00 0.00 5.03
77 78 4.933064 GTCCAGATCCGCCGCTCG 62.933 72.222 0.00 0.00 38.08 5.03
96 97 4.552365 CCGCGGCTCCATGTCCAT 62.552 66.667 14.67 0.00 0.00 3.41
97 98 3.274586 CGCGGCTCCATGTCCATG 61.275 66.667 0.00 0.14 38.51 3.66
98 99 3.589881 GCGGCTCCATGTCCATGC 61.590 66.667 1.64 0.00 37.49 4.06
99 100 2.903855 CGGCTCCATGTCCATGCC 60.904 66.667 1.64 0.00 37.49 4.40
100 101 2.599597 GGCTCCATGTCCATGCCT 59.400 61.111 1.64 0.00 40.36 4.75
101 102 1.527844 GGCTCCATGTCCATGCCTC 60.528 63.158 1.64 0.00 40.36 4.70
102 103 1.530771 GCTCCATGTCCATGCCTCT 59.469 57.895 1.64 0.00 37.49 3.69
103 104 0.818445 GCTCCATGTCCATGCCTCTG 60.818 60.000 1.64 0.00 37.49 3.35
104 105 0.545171 CTCCATGTCCATGCCTCTGT 59.455 55.000 1.64 0.00 37.49 3.41
105 106 0.994247 TCCATGTCCATGCCTCTGTT 59.006 50.000 1.64 0.00 37.49 3.16
106 107 1.100510 CCATGTCCATGCCTCTGTTG 58.899 55.000 1.64 0.00 37.49 3.33
107 108 0.454600 CATGTCCATGCCTCTGTTGC 59.545 55.000 0.00 0.00 31.39 4.17
108 109 0.682209 ATGTCCATGCCTCTGTTGCC 60.682 55.000 0.00 0.00 0.00 4.52
109 110 2.048603 GTCCATGCCTCTGTTGCCC 61.049 63.158 0.00 0.00 0.00 5.36
110 111 2.036098 CCATGCCTCTGTTGCCCA 59.964 61.111 0.00 0.00 0.00 5.36
111 112 2.050350 CCATGCCTCTGTTGCCCAG 61.050 63.158 0.00 0.00 42.97 4.45
112 113 1.303888 CATGCCTCTGTTGCCCAGT 60.304 57.895 0.96 0.00 42.19 4.00
113 114 0.896940 CATGCCTCTGTTGCCCAGTT 60.897 55.000 0.96 0.00 42.19 3.16
114 115 0.610232 ATGCCTCTGTTGCCCAGTTC 60.610 55.000 0.96 0.00 42.19 3.01
115 116 1.973812 GCCTCTGTTGCCCAGTTCC 60.974 63.158 0.96 0.00 42.19 3.62
116 117 1.303643 CCTCTGTTGCCCAGTTCCC 60.304 63.158 0.96 0.00 42.19 3.97
117 118 1.672356 CTCTGTTGCCCAGTTCCCG 60.672 63.158 0.96 0.00 42.19 5.14
118 119 3.365265 CTGTTGCCCAGTTCCCGC 61.365 66.667 0.00 0.00 36.37 6.13
119 120 3.850098 CTGTTGCCCAGTTCCCGCT 62.850 63.158 0.00 0.00 36.37 5.52
120 121 3.056328 GTTGCCCAGTTCCCGCTC 61.056 66.667 0.00 0.00 0.00 5.03
121 122 3.249189 TTGCCCAGTTCCCGCTCT 61.249 61.111 0.00 0.00 0.00 4.09
122 123 3.551496 TTGCCCAGTTCCCGCTCTG 62.551 63.158 0.00 0.00 0.00 3.35
124 125 4.785453 CCCAGTTCCCGCTCTGGC 62.785 72.222 5.77 0.00 46.83 4.85
135 136 4.435436 CTCTGGCGCCGCTACACA 62.435 66.667 23.90 0.00 0.00 3.72
136 137 3.723235 CTCTGGCGCCGCTACACAT 62.723 63.158 23.90 0.00 0.00 3.21
137 138 3.264897 CTGGCGCCGCTACACATC 61.265 66.667 23.90 0.00 0.00 3.06
138 139 4.830765 TGGCGCCGCTACACATCC 62.831 66.667 23.90 0.00 0.00 3.51
139 140 4.830765 GGCGCCGCTACACATCCA 62.831 66.667 12.58 0.00 0.00 3.41
140 141 3.564027 GCGCCGCTACACATCCAC 61.564 66.667 0.00 0.00 0.00 4.02
141 142 2.125713 CGCCGCTACACATCCACA 60.126 61.111 0.00 0.00 0.00 4.17
142 143 2.452813 CGCCGCTACACATCCACAC 61.453 63.158 0.00 0.00 0.00 3.82
143 144 1.079127 GCCGCTACACATCCACACT 60.079 57.895 0.00 0.00 0.00 3.55
144 145 0.673644 GCCGCTACACATCCACACTT 60.674 55.000 0.00 0.00 0.00 3.16
145 146 1.359848 CCGCTACACATCCACACTTC 58.640 55.000 0.00 0.00 0.00 3.01
146 147 1.359848 CGCTACACATCCACACTTCC 58.640 55.000 0.00 0.00 0.00 3.46
147 148 1.359848 GCTACACATCCACACTTCCG 58.640 55.000 0.00 0.00 0.00 4.30
148 149 1.337823 GCTACACATCCACACTTCCGT 60.338 52.381 0.00 0.00 0.00 4.69
149 150 2.870435 GCTACACATCCACACTTCCGTT 60.870 50.000 0.00 0.00 0.00 4.44
150 151 1.593196 ACACATCCACACTTCCGTTG 58.407 50.000 0.00 0.00 0.00 4.10
151 152 0.238289 CACATCCACACTTCCGTTGC 59.762 55.000 0.00 0.00 0.00 4.17
152 153 0.889186 ACATCCACACTTCCGTTGCC 60.889 55.000 0.00 0.00 0.00 4.52
153 154 0.606401 CATCCACACTTCCGTTGCCT 60.606 55.000 0.00 0.00 0.00 4.75
154 155 0.981183 ATCCACACTTCCGTTGCCTA 59.019 50.000 0.00 0.00 0.00 3.93
155 156 0.320374 TCCACACTTCCGTTGCCTAG 59.680 55.000 0.00 0.00 0.00 3.02
156 157 0.320374 CCACACTTCCGTTGCCTAGA 59.680 55.000 0.00 0.00 0.00 2.43
157 158 1.270625 CCACACTTCCGTTGCCTAGAA 60.271 52.381 0.00 0.00 0.00 2.10
158 159 2.069273 CACACTTCCGTTGCCTAGAAG 58.931 52.381 0.00 0.00 42.19 2.85
159 160 1.079503 CACTTCCGTTGCCTAGAAGC 58.920 55.000 0.00 0.00 40.54 3.86
160 161 0.977395 ACTTCCGTTGCCTAGAAGCT 59.023 50.000 0.00 0.00 40.54 3.74
161 162 1.066787 ACTTCCGTTGCCTAGAAGCTC 60.067 52.381 0.00 0.00 40.54 4.09
162 163 0.108804 TTCCGTTGCCTAGAAGCTCG 60.109 55.000 0.00 0.00 0.00 5.03
163 164 1.215647 CCGTTGCCTAGAAGCTCGT 59.784 57.895 0.00 0.00 32.25 4.18
164 165 0.802607 CCGTTGCCTAGAAGCTCGTC 60.803 60.000 0.00 0.00 32.25 4.20
165 166 1.134530 CGTTGCCTAGAAGCTCGTCG 61.135 60.000 0.00 0.00 0.00 5.12
166 167 1.153823 TTGCCTAGAAGCTCGTCGC 60.154 57.895 0.00 0.00 39.57 5.19
167 168 2.278923 GCCTAGAAGCTCGTCGCC 60.279 66.667 0.00 0.00 40.39 5.54
168 169 2.024871 CCTAGAAGCTCGTCGCCG 59.975 66.667 0.00 0.00 40.39 6.46
169 170 2.024871 CTAGAAGCTCGTCGCCGG 59.975 66.667 0.00 0.00 40.39 6.13
170 171 4.189188 TAGAAGCTCGTCGCCGGC 62.189 66.667 19.07 19.07 40.39 6.13
179 180 4.020378 GTCGCCGGCGCAAAAAGA 62.020 61.111 42.78 22.47 39.59 2.52
180 181 3.053291 TCGCCGGCGCAAAAAGAT 61.053 55.556 42.78 0.00 39.59 2.40
181 182 2.126502 CGCCGGCGCAAAAAGATT 60.127 55.556 38.48 0.00 34.03 2.40
182 183 2.152078 CGCCGGCGCAAAAAGATTC 61.152 57.895 38.48 0.00 34.03 2.52
183 184 1.080839 GCCGGCGCAAAAAGATTCA 60.081 52.632 12.58 0.00 34.03 2.57
184 185 1.344226 GCCGGCGCAAAAAGATTCAC 61.344 55.000 12.58 0.00 34.03 3.18
185 186 0.240945 CCGGCGCAAAAAGATTCACT 59.759 50.000 10.83 0.00 0.00 3.41
186 187 1.335872 CCGGCGCAAAAAGATTCACTT 60.336 47.619 10.83 0.00 40.98 3.16
215 216 0.839946 CCTTCAGGGTATGAGTGGGG 59.160 60.000 0.00 0.00 39.68 4.96
216 217 0.839946 CTTCAGGGTATGAGTGGGGG 59.160 60.000 0.00 0.00 39.68 5.40
217 218 1.279025 TTCAGGGTATGAGTGGGGGC 61.279 60.000 0.00 0.00 39.68 5.80
218 219 2.768344 AGGGTATGAGTGGGGGCG 60.768 66.667 0.00 0.00 0.00 6.13
219 220 2.766651 GGGTATGAGTGGGGGCGA 60.767 66.667 0.00 0.00 0.00 5.54
220 221 2.808206 GGGTATGAGTGGGGGCGAG 61.808 68.421 0.00 0.00 0.00 5.03
221 222 2.808206 GGTATGAGTGGGGGCGAGG 61.808 68.421 0.00 0.00 0.00 4.63
222 223 2.064581 GTATGAGTGGGGGCGAGGT 61.065 63.158 0.00 0.00 0.00 3.85
223 224 2.063979 TATGAGTGGGGGCGAGGTG 61.064 63.158 0.00 0.00 0.00 4.00
231 232 4.410400 GGGCGAGGTGGTGGGAAG 62.410 72.222 0.00 0.00 0.00 3.46
232 233 3.319198 GGCGAGGTGGTGGGAAGA 61.319 66.667 0.00 0.00 0.00 2.87
233 234 2.747686 GCGAGGTGGTGGGAAGAA 59.252 61.111 0.00 0.00 0.00 2.52
234 235 1.072505 GCGAGGTGGTGGGAAGAAA 59.927 57.895 0.00 0.00 0.00 2.52
235 236 0.955919 GCGAGGTGGTGGGAAGAAAG 60.956 60.000 0.00 0.00 0.00 2.62
236 237 0.321653 CGAGGTGGTGGGAAGAAAGG 60.322 60.000 0.00 0.00 0.00 3.11
237 238 0.038310 GAGGTGGTGGGAAGAAAGGG 59.962 60.000 0.00 0.00 0.00 3.95
238 239 0.402861 AGGTGGTGGGAAGAAAGGGA 60.403 55.000 0.00 0.00 0.00 4.20
239 240 0.251209 GGTGGTGGGAAGAAAGGGAC 60.251 60.000 0.00 0.00 0.00 4.46
240 241 0.605589 GTGGTGGGAAGAAAGGGACG 60.606 60.000 0.00 0.00 0.00 4.79
241 242 0.765135 TGGTGGGAAGAAAGGGACGA 60.765 55.000 0.00 0.00 0.00 4.20
242 243 0.618981 GGTGGGAAGAAAGGGACGAT 59.381 55.000 0.00 0.00 0.00 3.73
243 244 1.679032 GGTGGGAAGAAAGGGACGATG 60.679 57.143 0.00 0.00 0.00 3.84
244 245 0.618458 TGGGAAGAAAGGGACGATGG 59.382 55.000 0.00 0.00 0.00 3.51
245 246 0.909623 GGGAAGAAAGGGACGATGGA 59.090 55.000 0.00 0.00 0.00 3.41
246 247 1.134371 GGGAAGAAAGGGACGATGGAG 60.134 57.143 0.00 0.00 0.00 3.86
247 248 1.657822 GAAGAAAGGGACGATGGAGC 58.342 55.000 0.00 0.00 0.00 4.70
248 249 0.984230 AAGAAAGGGACGATGGAGCA 59.016 50.000 0.00 0.00 0.00 4.26
249 250 0.539051 AGAAAGGGACGATGGAGCAG 59.461 55.000 0.00 0.00 0.00 4.24
250 251 0.462759 GAAAGGGACGATGGAGCAGG 60.463 60.000 0.00 0.00 0.00 4.85
251 252 2.543067 AAAGGGACGATGGAGCAGGC 62.543 60.000 0.00 0.00 0.00 4.85
252 253 4.554036 GGGACGATGGAGCAGGCC 62.554 72.222 0.00 0.00 0.00 5.19
253 254 3.785859 GGACGATGGAGCAGGCCA 61.786 66.667 5.01 0.00 43.23 5.36
254 255 2.202987 GACGATGGAGCAGGCCAG 60.203 66.667 5.01 0.00 42.15 4.85
255 256 4.479993 ACGATGGAGCAGGCCAGC 62.480 66.667 13.11 13.11 42.15 4.85
257 258 4.166888 GATGGAGCAGGCCAGCGA 62.167 66.667 15.17 3.15 42.15 4.93
258 259 4.479993 ATGGAGCAGGCCAGCGAC 62.480 66.667 15.17 12.01 42.15 5.19
264 265 4.514577 CAGGCCAGCGACGGGTAG 62.515 72.222 5.01 0.00 0.00 3.18
265 266 4.753662 AGGCCAGCGACGGGTAGA 62.754 66.667 5.01 0.00 0.00 2.59
266 267 4.208686 GGCCAGCGACGGGTAGAG 62.209 72.222 0.00 0.00 0.00 2.43
267 268 4.208686 GCCAGCGACGGGTAGAGG 62.209 72.222 0.00 0.00 0.00 3.69
268 269 3.528370 CCAGCGACGGGTAGAGGG 61.528 72.222 0.00 0.00 0.00 4.30
269 270 2.439701 CAGCGACGGGTAGAGGGA 60.440 66.667 0.00 0.00 0.00 4.20
270 271 2.124236 AGCGACGGGTAGAGGGAG 60.124 66.667 0.00 0.00 0.00 4.30
271 272 2.124403 GCGACGGGTAGAGGGAGA 60.124 66.667 0.00 0.00 0.00 3.71
272 273 2.188161 GCGACGGGTAGAGGGAGAG 61.188 68.421 0.00 0.00 0.00 3.20
273 274 1.526455 CGACGGGTAGAGGGAGAGG 60.526 68.421 0.00 0.00 0.00 3.69
274 275 1.829096 GACGGGTAGAGGGAGAGGC 60.829 68.421 0.00 0.00 0.00 4.70
275 276 2.522193 CGGGTAGAGGGAGAGGCC 60.522 72.222 0.00 0.00 0.00 5.19
276 277 2.522193 GGGTAGAGGGAGAGGCCG 60.522 72.222 0.00 0.00 37.63 6.13
277 278 2.601868 GGTAGAGGGAGAGGCCGA 59.398 66.667 0.00 0.00 37.63 5.54
278 279 1.154221 GGTAGAGGGAGAGGCCGAT 59.846 63.158 0.00 0.00 37.63 4.18
279 280 1.182385 GGTAGAGGGAGAGGCCGATG 61.182 65.000 0.00 0.00 37.63 3.84
280 281 0.178987 GTAGAGGGAGAGGCCGATGA 60.179 60.000 0.00 0.00 37.63 2.92
281 282 0.178987 TAGAGGGAGAGGCCGATGAC 60.179 60.000 0.00 0.00 37.63 3.06
282 283 2.835431 AGGGAGAGGCCGATGACG 60.835 66.667 0.00 0.00 37.63 4.35
283 284 2.833582 GGGAGAGGCCGATGACGA 60.834 66.667 0.00 0.00 42.66 4.20
284 285 2.725008 GGAGAGGCCGATGACGAG 59.275 66.667 0.00 0.00 42.66 4.18
285 286 2.725008 GAGAGGCCGATGACGAGG 59.275 66.667 0.00 0.00 42.66 4.63
286 287 1.824329 GAGAGGCCGATGACGAGGA 60.824 63.158 0.00 0.00 42.66 3.71
287 288 1.791103 GAGAGGCCGATGACGAGGAG 61.791 65.000 0.00 0.00 42.66 3.69
288 289 1.824329 GAGGCCGATGACGAGGAGA 60.824 63.158 0.00 0.00 42.66 3.71
289 290 1.791103 GAGGCCGATGACGAGGAGAG 61.791 65.000 0.00 0.00 42.66 3.20
290 291 2.725008 GCCGATGACGAGGAGAGG 59.275 66.667 0.00 0.00 42.66 3.69
291 292 1.824329 GCCGATGACGAGGAGAGGA 60.824 63.158 0.00 0.00 42.66 3.71
292 293 1.384989 GCCGATGACGAGGAGAGGAA 61.385 60.000 0.00 0.00 42.66 3.36
293 294 0.665835 CCGATGACGAGGAGAGGAAG 59.334 60.000 0.00 0.00 42.66 3.46
294 295 1.669604 CGATGACGAGGAGAGGAAGA 58.330 55.000 0.00 0.00 42.66 2.87
295 296 1.601903 CGATGACGAGGAGAGGAAGAG 59.398 57.143 0.00 0.00 42.66 2.85
296 297 1.953686 GATGACGAGGAGAGGAAGAGG 59.046 57.143 0.00 0.00 0.00 3.69
297 298 0.033991 TGACGAGGAGAGGAAGAGGG 60.034 60.000 0.00 0.00 0.00 4.30
298 299 1.380650 ACGAGGAGAGGAAGAGGGC 60.381 63.158 0.00 0.00 0.00 5.19
299 300 2.485795 CGAGGAGAGGAAGAGGGCG 61.486 68.421 0.00 0.00 0.00 6.13
300 301 2.042435 AGGAGAGGAAGAGGGCGG 60.042 66.667 0.00 0.00 0.00 6.13
301 302 2.364448 GGAGAGGAAGAGGGCGGT 60.364 66.667 0.00 0.00 0.00 5.68
302 303 2.726351 GGAGAGGAAGAGGGCGGTG 61.726 68.421 0.00 0.00 0.00 4.94
303 304 1.682684 GAGAGGAAGAGGGCGGTGA 60.683 63.158 0.00 0.00 0.00 4.02
304 305 1.002274 AGAGGAAGAGGGCGGTGAT 59.998 57.895 0.00 0.00 0.00 3.06
305 306 1.144936 GAGGAAGAGGGCGGTGATG 59.855 63.158 0.00 0.00 0.00 3.07
306 307 1.306141 AGGAAGAGGGCGGTGATGA 60.306 57.895 0.00 0.00 0.00 2.92
307 308 1.144936 GGAAGAGGGCGGTGATGAG 59.855 63.158 0.00 0.00 0.00 2.90
308 309 1.144936 GAAGAGGGCGGTGATGAGG 59.855 63.158 0.00 0.00 0.00 3.86
309 310 1.306141 AAGAGGGCGGTGATGAGGA 60.306 57.895 0.00 0.00 0.00 3.71
310 311 1.333636 AAGAGGGCGGTGATGAGGAG 61.334 60.000 0.00 0.00 0.00 3.69
311 312 1.758514 GAGGGCGGTGATGAGGAGA 60.759 63.158 0.00 0.00 0.00 3.71
312 313 1.743321 GAGGGCGGTGATGAGGAGAG 61.743 65.000 0.00 0.00 0.00 3.20
313 314 2.801631 GGGCGGTGATGAGGAGAGG 61.802 68.421 0.00 0.00 0.00 3.69
314 315 2.801631 GGCGGTGATGAGGAGAGGG 61.802 68.421 0.00 0.00 0.00 4.30
315 316 1.758514 GCGGTGATGAGGAGAGGGA 60.759 63.158 0.00 0.00 0.00 4.20
316 317 1.743321 GCGGTGATGAGGAGAGGGAG 61.743 65.000 0.00 0.00 0.00 4.30
317 318 0.106469 CGGTGATGAGGAGAGGGAGA 60.106 60.000 0.00 0.00 0.00 3.71
318 319 1.703411 GGTGATGAGGAGAGGGAGAG 58.297 60.000 0.00 0.00 0.00 3.20
319 320 1.703411 GTGATGAGGAGAGGGAGAGG 58.297 60.000 0.00 0.00 0.00 3.69
320 321 0.560193 TGATGAGGAGAGGGAGAGGG 59.440 60.000 0.00 0.00 0.00 4.30
321 322 0.831711 GATGAGGAGAGGGAGAGGGC 60.832 65.000 0.00 0.00 0.00 5.19
322 323 2.520741 GAGGAGAGGGAGAGGGCG 60.521 72.222 0.00 0.00 0.00 6.13
323 324 4.150454 AGGAGAGGGAGAGGGCGG 62.150 72.222 0.00 0.00 0.00 6.13
331 332 4.200283 GAGAGGGCGGCGACAGAG 62.200 72.222 17.61 0.00 0.00 3.35
338 339 3.522731 CGGCGACAGAGGGGAGAG 61.523 72.222 0.00 0.00 0.00 3.20
339 340 3.151022 GGCGACAGAGGGGAGAGG 61.151 72.222 0.00 0.00 0.00 3.69
340 341 3.151022 GCGACAGAGGGGAGAGGG 61.151 72.222 0.00 0.00 0.00 4.30
341 342 2.684104 CGACAGAGGGGAGAGGGA 59.316 66.667 0.00 0.00 0.00 4.20
342 343 1.231641 CGACAGAGGGGAGAGGGAT 59.768 63.158 0.00 0.00 0.00 3.85
343 344 0.397816 CGACAGAGGGGAGAGGGATT 60.398 60.000 0.00 0.00 0.00 3.01
344 345 1.127343 GACAGAGGGGAGAGGGATTG 58.873 60.000 0.00 0.00 0.00 2.67
345 346 0.327000 ACAGAGGGGAGAGGGATTGG 60.327 60.000 0.00 0.00 0.00 3.16
346 347 1.059006 CAGAGGGGAGAGGGATTGGG 61.059 65.000 0.00 0.00 0.00 4.12
347 348 1.238896 AGAGGGGAGAGGGATTGGGA 61.239 60.000 0.00 0.00 0.00 4.37
348 349 0.766288 GAGGGGAGAGGGATTGGGAG 60.766 65.000 0.00 0.00 0.00 4.30
349 350 1.238896 AGGGGAGAGGGATTGGGAGA 61.239 60.000 0.00 0.00 0.00 3.71
350 351 0.766288 GGGGAGAGGGATTGGGAGAG 60.766 65.000 0.00 0.00 0.00 3.20
351 352 1.414866 GGGAGAGGGATTGGGAGAGC 61.415 65.000 0.00 0.00 0.00 4.09
352 353 1.745264 GAGAGGGATTGGGAGAGCG 59.255 63.158 0.00 0.00 0.00 5.03
353 354 1.753368 GAGAGGGATTGGGAGAGCGG 61.753 65.000 0.00 0.00 0.00 5.52
354 355 3.468326 GAGGGATTGGGAGAGCGGC 62.468 68.421 0.00 0.00 0.00 6.53
355 356 4.918201 GGGATTGGGAGAGCGGCG 62.918 72.222 0.51 0.51 0.00 6.46
356 357 3.849951 GGATTGGGAGAGCGGCGA 61.850 66.667 12.98 0.00 0.00 5.54
357 358 2.586357 GATTGGGAGAGCGGCGAC 60.586 66.667 12.98 3.29 0.00 5.19
369 370 4.547367 GGCGACGGGGAGGATTGG 62.547 72.222 0.00 0.00 0.00 3.16
370 371 4.547367 GCGACGGGGAGGATTGGG 62.547 72.222 0.00 0.00 0.00 4.12
371 372 2.762459 CGACGGGGAGGATTGGGA 60.762 66.667 0.00 0.00 0.00 4.37
372 373 2.797278 CGACGGGGAGGATTGGGAG 61.797 68.421 0.00 0.00 0.00 4.30
373 374 1.382695 GACGGGGAGGATTGGGAGA 60.383 63.158 0.00 0.00 0.00 3.71
374 375 1.383248 ACGGGGAGGATTGGGAGAG 60.383 63.158 0.00 0.00 0.00 3.20
375 376 1.383248 CGGGGAGGATTGGGAGAGT 60.383 63.158 0.00 0.00 0.00 3.24
376 377 1.690219 CGGGGAGGATTGGGAGAGTG 61.690 65.000 0.00 0.00 0.00 3.51
377 378 1.348775 GGGGAGGATTGGGAGAGTGG 61.349 65.000 0.00 0.00 0.00 4.00
378 379 1.529309 GGAGGATTGGGAGAGTGGC 59.471 63.158 0.00 0.00 0.00 5.01
379 380 1.144936 GAGGATTGGGAGAGTGGCG 59.855 63.158 0.00 0.00 0.00 5.69
380 381 1.306141 AGGATTGGGAGAGTGGCGA 60.306 57.895 0.00 0.00 0.00 5.54
381 382 1.144936 GGATTGGGAGAGTGGCGAG 59.855 63.158 0.00 0.00 0.00 5.03
382 383 1.522580 GATTGGGAGAGTGGCGAGC 60.523 63.158 0.00 0.00 0.00 5.03
383 384 2.244117 GATTGGGAGAGTGGCGAGCA 62.244 60.000 0.00 0.00 0.00 4.26
384 385 1.841302 ATTGGGAGAGTGGCGAGCAA 61.841 55.000 0.00 0.00 0.00 3.91
385 386 2.125350 GGGAGAGTGGCGAGCAAG 60.125 66.667 0.00 0.00 0.00 4.01
386 387 2.817396 GGAGAGTGGCGAGCAAGC 60.817 66.667 0.00 0.00 0.00 4.01
387 388 3.184683 GAGAGTGGCGAGCAAGCG 61.185 66.667 0.00 0.00 38.18 4.68
388 389 3.633094 GAGAGTGGCGAGCAAGCGA 62.633 63.158 0.00 0.00 38.18 4.93
389 390 3.184683 GAGTGGCGAGCAAGCGAG 61.185 66.667 0.00 0.00 38.18 5.03
392 393 3.758931 TGGCGAGCAAGCGAGCTA 61.759 61.111 5.91 5.92 46.75 3.32
393 394 2.959071 GGCGAGCAAGCGAGCTAG 60.959 66.667 5.91 7.46 46.75 3.42
394 395 2.202676 GCGAGCAAGCGAGCTAGT 60.203 61.111 13.15 0.00 46.75 2.57
395 396 2.512301 GCGAGCAAGCGAGCTAGTG 61.512 63.158 13.15 0.00 46.75 2.74
396 397 1.875813 CGAGCAAGCGAGCTAGTGG 60.876 63.158 5.91 0.00 46.75 4.00
397 398 1.520342 GAGCAAGCGAGCTAGTGGG 60.520 63.158 5.91 0.00 46.75 4.61
398 399 1.949847 GAGCAAGCGAGCTAGTGGGA 61.950 60.000 5.91 0.00 46.75 4.37
399 400 1.520342 GCAAGCGAGCTAGTGGGAG 60.520 63.158 0.00 0.00 0.00 4.30
400 401 1.520342 CAAGCGAGCTAGTGGGAGC 60.520 63.158 0.00 0.00 43.19 4.70
401 402 1.984570 AAGCGAGCTAGTGGGAGCA 60.985 57.895 0.00 0.00 45.43 4.26
402 403 1.544825 AAGCGAGCTAGTGGGAGCAA 61.545 55.000 0.00 0.00 45.43 3.91
403 404 1.520342 GCGAGCTAGTGGGAGCAAG 60.520 63.158 0.00 0.00 45.43 4.01
404 405 1.520342 CGAGCTAGTGGGAGCAAGC 60.520 63.158 0.00 0.00 45.43 4.01
405 406 1.520342 GAGCTAGTGGGAGCAAGCG 60.520 63.158 0.00 0.00 45.43 4.68
406 407 1.949847 GAGCTAGTGGGAGCAAGCGA 61.950 60.000 0.00 0.00 45.43 4.93
407 408 1.520342 GCTAGTGGGAGCAAGCGAG 60.520 63.158 0.00 0.00 42.36 5.03
408 409 1.520342 CTAGTGGGAGCAAGCGAGC 60.520 63.158 0.00 0.00 0.00 5.03
409 410 2.230994 CTAGTGGGAGCAAGCGAGCA 62.231 60.000 6.21 0.00 36.85 4.26
410 411 1.826340 TAGTGGGAGCAAGCGAGCAA 61.826 55.000 6.21 0.00 36.85 3.91
411 412 2.359107 TGGGAGCAAGCGAGCAAG 60.359 61.111 6.21 0.00 36.85 4.01
412 413 3.808656 GGGAGCAAGCGAGCAAGC 61.809 66.667 6.21 0.61 36.85 4.01
428 429 2.580867 GCTAGTGCGAGCGAGTGG 60.581 66.667 0.00 0.00 31.57 4.00
429 430 2.103143 CTAGTGCGAGCGAGTGGG 59.897 66.667 0.00 0.00 0.00 4.61
430 431 2.360726 TAGTGCGAGCGAGTGGGA 60.361 61.111 0.00 0.00 0.00 4.37
431 432 2.329678 CTAGTGCGAGCGAGTGGGAG 62.330 65.000 0.00 0.00 0.00 4.30
432 433 4.803426 GTGCGAGCGAGTGGGAGG 62.803 72.222 0.00 0.00 0.00 4.30
436 437 3.706373 GAGCGAGTGGGAGGGCAA 61.706 66.667 0.00 0.00 0.00 4.52
437 438 3.249189 AGCGAGTGGGAGGGCAAA 61.249 61.111 0.00 0.00 0.00 3.68
438 439 2.282180 GCGAGTGGGAGGGCAAAA 60.282 61.111 0.00 0.00 0.00 2.44
439 440 2.626780 GCGAGTGGGAGGGCAAAAC 61.627 63.158 0.00 0.00 0.00 2.43
440 441 1.228124 CGAGTGGGAGGGCAAAACA 60.228 57.895 0.00 0.00 0.00 2.83
441 442 1.237285 CGAGTGGGAGGGCAAAACAG 61.237 60.000 0.00 0.00 0.00 3.16
442 443 0.895559 GAGTGGGAGGGCAAAACAGG 60.896 60.000 0.00 0.00 0.00 4.00
443 444 1.152830 GTGGGAGGGCAAAACAGGA 59.847 57.895 0.00 0.00 0.00 3.86
444 445 0.469144 GTGGGAGGGCAAAACAGGAA 60.469 55.000 0.00 0.00 0.00 3.36
445 446 0.263172 TGGGAGGGCAAAACAGGAAA 59.737 50.000 0.00 0.00 0.00 3.13
446 447 0.969149 GGGAGGGCAAAACAGGAAAG 59.031 55.000 0.00 0.00 0.00 2.62
447 448 1.704641 GGAGGGCAAAACAGGAAAGT 58.295 50.000 0.00 0.00 0.00 2.66
448 449 1.341209 GGAGGGCAAAACAGGAAAGTG 59.659 52.381 0.00 0.00 0.00 3.16
449 450 2.306847 GAGGGCAAAACAGGAAAGTGA 58.693 47.619 0.00 0.00 0.00 3.41
450 451 2.893489 GAGGGCAAAACAGGAAAGTGAT 59.107 45.455 0.00 0.00 0.00 3.06
451 452 3.308401 AGGGCAAAACAGGAAAGTGATT 58.692 40.909 0.00 0.00 0.00 2.57
452 453 3.711190 AGGGCAAAACAGGAAAGTGATTT 59.289 39.130 0.00 0.00 0.00 2.17
453 454 4.164030 AGGGCAAAACAGGAAAGTGATTTT 59.836 37.500 0.00 0.00 0.00 1.82
454 455 4.881273 GGGCAAAACAGGAAAGTGATTTTT 59.119 37.500 0.00 0.00 0.00 1.94
479 480 9.638239 TTTTTATAACGTGACGGAATTAGTACT 57.362 29.630 10.66 0.00 0.00 2.73
480 481 8.619146 TTTATAACGTGACGGAATTAGTACTG 57.381 34.615 10.66 0.00 0.00 2.74
481 482 3.498927 ACGTGACGGAATTAGTACTGG 57.501 47.619 10.66 0.00 0.00 4.00
482 483 2.165030 ACGTGACGGAATTAGTACTGGG 59.835 50.000 10.66 0.00 0.00 4.45
483 484 2.165030 CGTGACGGAATTAGTACTGGGT 59.835 50.000 5.39 0.00 0.00 4.51
484 485 3.367703 CGTGACGGAATTAGTACTGGGTT 60.368 47.826 5.39 0.00 0.00 4.11
485 486 3.930848 GTGACGGAATTAGTACTGGGTTG 59.069 47.826 5.39 0.00 0.00 3.77
486 487 2.934553 GACGGAATTAGTACTGGGTTGC 59.065 50.000 5.39 2.20 0.00 4.17
487 488 2.285977 CGGAATTAGTACTGGGTTGCC 58.714 52.381 5.39 0.00 0.00 4.52
488 489 2.651455 GGAATTAGTACTGGGTTGCCC 58.349 52.381 5.39 0.00 45.71 5.36
497 498 2.676471 GGGTTGCCCAGCGACAAT 60.676 61.111 9.09 0.00 44.12 2.71
498 499 2.275380 GGGTTGCCCAGCGACAATT 61.275 57.895 9.09 0.00 44.12 2.32
499 500 0.963355 GGGTTGCCCAGCGACAATTA 60.963 55.000 9.09 0.00 44.12 1.40
500 501 1.102978 GGTTGCCCAGCGACAATTAT 58.897 50.000 9.09 0.00 44.12 1.28
501 502 1.476488 GGTTGCCCAGCGACAATTATT 59.524 47.619 9.09 0.00 44.12 1.40
502 503 2.094234 GGTTGCCCAGCGACAATTATTT 60.094 45.455 9.09 0.00 44.12 1.40
503 504 3.179048 GTTGCCCAGCGACAATTATTTC 58.821 45.455 2.03 0.00 42.10 2.17
504 505 1.400142 TGCCCAGCGACAATTATTTCG 59.600 47.619 0.00 5.59 38.31 3.46
505 506 1.268539 GCCCAGCGACAATTATTTCGG 60.269 52.381 9.95 0.00 35.73 4.30
506 507 2.285083 CCCAGCGACAATTATTTCGGA 58.715 47.619 9.95 0.00 35.73 4.55
507 508 2.680841 CCCAGCGACAATTATTTCGGAA 59.319 45.455 9.95 0.00 35.73 4.30
508 509 3.486875 CCCAGCGACAATTATTTCGGAAC 60.487 47.826 9.95 0.00 35.73 3.62
509 510 3.126171 CCAGCGACAATTATTTCGGAACA 59.874 43.478 9.95 0.00 35.73 3.18
510 511 4.334443 CAGCGACAATTATTTCGGAACAG 58.666 43.478 9.95 0.00 35.73 3.16
511 512 4.092821 CAGCGACAATTATTTCGGAACAGA 59.907 41.667 9.95 0.00 35.73 3.41
512 513 4.330074 AGCGACAATTATTTCGGAACAGAG 59.670 41.667 9.95 0.00 35.73 3.35
513 514 4.494199 GCGACAATTATTTCGGAACAGAGG 60.494 45.833 9.95 0.00 35.73 3.69
514 515 4.034048 CGACAATTATTTCGGAACAGAGGG 59.966 45.833 0.00 0.00 0.00 4.30
515 516 5.174037 ACAATTATTTCGGAACAGAGGGA 57.826 39.130 0.00 0.00 0.00 4.20
516 517 5.186198 ACAATTATTTCGGAACAGAGGGAG 58.814 41.667 0.00 0.00 0.00 4.30
534 535 4.902448 AGGGAGTAGTTCAGTCAGACTTTT 59.098 41.667 0.00 0.00 0.00 2.27
627 632 2.222886 ACGTCTCCTCAGATACCATCG 58.777 52.381 0.00 0.00 0.00 3.84
638 643 2.038557 AGATACCATCGCCATTACCACC 59.961 50.000 0.00 0.00 0.00 4.61
643 648 0.472471 ATCGCCATTACCACCGGAAT 59.528 50.000 9.46 0.00 0.00 3.01
653 658 1.651240 CCACCGGAATGCTGCTTGAG 61.651 60.000 9.46 0.00 0.00 3.02
927 951 5.316167 AGAAATCTGATACAGGTTGCACAA 58.684 37.500 5.67 0.00 34.77 3.33
994 1038 7.733773 TCCATGGTTTTCTACTTCATCTCTA 57.266 36.000 12.58 0.00 0.00 2.43
1007 1051 4.976540 TCATCTCTACGTCCAGGAGATA 57.023 45.455 16.92 0.00 42.65 1.98
1808 1920 5.020795 TGTATATACCATGCACTACCGGAT 58.979 41.667 9.46 0.00 0.00 4.18
1901 2013 1.197910 GCTGTCGGTGTAGATTACGC 58.802 55.000 0.00 0.00 38.42 4.42
1968 2080 2.036890 ACCTAGGACGACGGCCTT 59.963 61.111 30.78 7.19 36.96 4.35
2022 2134 2.203084 TTTTGCACGAGACGGCCA 60.203 55.556 2.24 0.00 0.00 5.36
2288 2437 5.526705 CGTAGTTCAAAAACTATGTCGACG 58.473 41.667 11.62 0.00 46.76 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.160047 AGCAGCGGAGGGAGATGG 61.160 66.667 0.00 0.00 0.00 3.51
1 2 2.132996 AGAGCAGCGGAGGGAGATG 61.133 63.158 0.00 0.00 0.00 2.90
2 3 2.132996 CAGAGCAGCGGAGGGAGAT 61.133 63.158 0.00 0.00 0.00 2.75
3 4 2.757508 CAGAGCAGCGGAGGGAGA 60.758 66.667 0.00 0.00 0.00 3.71
4 5 3.847602 CCAGAGCAGCGGAGGGAG 61.848 72.222 0.00 0.00 0.00 4.30
27 28 4.767255 GGAGTGGCAGGCCTCGTG 62.767 72.222 0.00 0.00 36.94 4.35
29 30 4.767255 GTGGAGTGGCAGGCCTCG 62.767 72.222 0.00 0.00 36.94 4.63
30 31 3.325753 AGTGGAGTGGCAGGCCTC 61.326 66.667 0.00 8.11 36.94 4.70
31 32 3.644606 CAGTGGAGTGGCAGGCCT 61.645 66.667 12.19 0.00 36.94 5.19
34 35 4.729918 GGGCAGTGGAGTGGCAGG 62.730 72.222 9.95 0.00 44.72 4.85
35 36 4.729918 GGGGCAGTGGAGTGGCAG 62.730 72.222 9.95 0.00 44.72 4.85
38 39 4.394712 GTCGGGGCAGTGGAGTGG 62.395 72.222 0.00 0.00 0.00 4.00
39 40 4.742201 CGTCGGGGCAGTGGAGTG 62.742 72.222 0.00 0.00 0.00 3.51
50 51 3.432051 GATCTGGACAGGCGTCGGG 62.432 68.421 0.00 0.00 43.61 5.14
51 52 2.105128 GATCTGGACAGGCGTCGG 59.895 66.667 0.00 0.00 43.61 4.79
52 53 2.105128 GGATCTGGACAGGCGTCG 59.895 66.667 0.00 0.00 43.61 5.12
53 54 2.105128 CGGATCTGGACAGGCGTC 59.895 66.667 0.00 1.63 41.80 5.19
54 55 4.148825 GCGGATCTGGACAGGCGT 62.149 66.667 3.14 0.00 0.00 5.68
55 56 4.899239 GGCGGATCTGGACAGGCG 62.899 72.222 3.14 0.00 0.00 5.52
56 57 4.899239 CGGCGGATCTGGACAGGC 62.899 72.222 3.14 0.00 0.00 4.85
57 58 4.899239 GCGGCGGATCTGGACAGG 62.899 72.222 9.78 0.00 0.00 4.00
58 59 3.781770 GAGCGGCGGATCTGGACAG 62.782 68.421 9.78 0.00 0.00 3.51
59 60 3.838271 GAGCGGCGGATCTGGACA 61.838 66.667 9.78 0.00 0.00 4.02
60 61 4.933064 CGAGCGGCGGATCTGGAC 62.933 72.222 9.78 0.00 36.03 4.02
79 80 4.552365 ATGGACATGGAGCCGCGG 62.552 66.667 24.05 24.05 0.00 6.46
80 81 3.274586 CATGGACATGGAGCCGCG 61.275 66.667 0.00 0.00 35.24 6.46
81 82 3.589881 GCATGGACATGGAGCCGC 61.590 66.667 13.63 0.00 39.16 6.53
82 83 2.903855 GGCATGGACATGGAGCCG 60.904 66.667 13.63 0.00 39.16 5.52
83 84 1.527844 GAGGCATGGACATGGAGCC 60.528 63.158 13.63 8.87 45.54 4.70
84 85 0.818445 CAGAGGCATGGACATGGAGC 60.818 60.000 13.63 0.00 39.16 4.70
85 86 0.545171 ACAGAGGCATGGACATGGAG 59.455 55.000 13.63 0.00 39.16 3.86
86 87 0.994247 AACAGAGGCATGGACATGGA 59.006 50.000 13.63 0.00 39.16 3.41
87 88 1.100510 CAACAGAGGCATGGACATGG 58.899 55.000 13.63 0.03 39.16 3.66
88 89 0.454600 GCAACAGAGGCATGGACATG 59.545 55.000 7.91 7.91 41.60 3.21
89 90 0.682209 GGCAACAGAGGCATGGACAT 60.682 55.000 0.00 0.00 0.00 3.06
90 91 1.303561 GGCAACAGAGGCATGGACA 60.304 57.895 0.00 0.00 0.00 4.02
91 92 2.048603 GGGCAACAGAGGCATGGAC 61.049 63.158 0.00 0.00 39.74 4.02
92 93 2.356278 GGGCAACAGAGGCATGGA 59.644 61.111 0.00 0.00 39.74 3.41
93 94 2.036098 TGGGCAACAGAGGCATGG 59.964 61.111 0.00 0.00 39.74 3.66
102 103 3.842925 GAGCGGGAACTGGGCAACA 62.843 63.158 0.00 0.00 39.74 3.33
103 104 3.056328 GAGCGGGAACTGGGCAAC 61.056 66.667 0.00 0.00 33.56 4.17
104 105 3.249189 AGAGCGGGAACTGGGCAA 61.249 61.111 0.00 0.00 33.56 4.52
105 106 4.020617 CAGAGCGGGAACTGGGCA 62.021 66.667 0.00 0.00 33.56 5.36
106 107 4.785453 CCAGAGCGGGAACTGGGC 62.785 72.222 0.00 0.00 46.76 5.36
118 119 3.723235 ATGTGTAGCGGCGCCAGAG 62.723 63.158 30.40 11.84 0.00 3.35
119 120 3.716539 GATGTGTAGCGGCGCCAGA 62.717 63.158 30.40 19.24 0.00 3.86
120 121 3.264897 GATGTGTAGCGGCGCCAG 61.265 66.667 30.40 20.12 0.00 4.85
121 122 4.830765 GGATGTGTAGCGGCGCCA 62.831 66.667 30.40 19.84 0.00 5.69
122 123 4.830765 TGGATGTGTAGCGGCGCC 62.831 66.667 30.40 19.07 0.00 6.53
123 124 3.564027 GTGGATGTGTAGCGGCGC 61.564 66.667 26.86 26.86 0.00 6.53
124 125 2.125713 TGTGGATGTGTAGCGGCG 60.126 61.111 0.51 0.51 0.00 6.46
125 126 0.673644 AAGTGTGGATGTGTAGCGGC 60.674 55.000 0.00 0.00 0.00 6.53
126 127 1.359848 GAAGTGTGGATGTGTAGCGG 58.640 55.000 0.00 0.00 0.00 5.52
127 128 1.359848 GGAAGTGTGGATGTGTAGCG 58.640 55.000 0.00 0.00 0.00 4.26
128 129 1.337823 ACGGAAGTGTGGATGTGTAGC 60.338 52.381 0.00 0.00 46.97 3.58
129 130 2.743636 ACGGAAGTGTGGATGTGTAG 57.256 50.000 0.00 0.00 46.97 2.74
142 143 1.646189 GAGCTTCTAGGCAACGGAAG 58.354 55.000 0.00 0.00 46.47 3.46
143 144 0.108804 CGAGCTTCTAGGCAACGGAA 60.109 55.000 0.00 0.00 46.39 4.30
144 145 1.248785 ACGAGCTTCTAGGCAACGGA 61.249 55.000 12.16 0.00 46.39 4.69
145 146 0.802607 GACGAGCTTCTAGGCAACGG 60.803 60.000 12.16 0.00 46.39 4.44
146 147 1.134530 CGACGAGCTTCTAGGCAACG 61.135 60.000 0.00 0.00 46.39 4.10
147 148 1.414527 GCGACGAGCTTCTAGGCAAC 61.415 60.000 0.00 0.00 44.04 4.17
148 149 1.153823 GCGACGAGCTTCTAGGCAA 60.154 57.895 0.00 0.00 44.04 4.52
149 150 2.490217 GCGACGAGCTTCTAGGCA 59.510 61.111 0.00 0.00 44.04 4.75
164 165 2.126502 AATCTTTTTGCGCCGGCG 60.127 55.556 43.13 43.13 44.10 6.46
165 166 1.080839 TGAATCTTTTTGCGCCGGC 60.081 52.632 19.07 19.07 40.52 6.13
166 167 0.240945 AGTGAATCTTTTTGCGCCGG 59.759 50.000 4.18 0.00 0.00 6.13
167 168 2.050477 AAGTGAATCTTTTTGCGCCG 57.950 45.000 4.18 0.00 31.57 6.46
196 197 0.839946 CCCCACTCATACCCTGAAGG 59.160 60.000 0.00 0.00 43.78 3.46
197 198 0.839946 CCCCCACTCATACCCTGAAG 59.160 60.000 0.00 0.00 32.14 3.02
198 199 1.279025 GCCCCCACTCATACCCTGAA 61.279 60.000 0.00 0.00 32.14 3.02
199 200 1.692749 GCCCCCACTCATACCCTGA 60.693 63.158 0.00 0.00 0.00 3.86
200 201 2.919043 GCCCCCACTCATACCCTG 59.081 66.667 0.00 0.00 0.00 4.45
201 202 2.768344 CGCCCCCACTCATACCCT 60.768 66.667 0.00 0.00 0.00 4.34
202 203 2.766651 TCGCCCCCACTCATACCC 60.767 66.667 0.00 0.00 0.00 3.69
203 204 2.808206 CCTCGCCCCCACTCATACC 61.808 68.421 0.00 0.00 0.00 2.73
204 205 2.064581 ACCTCGCCCCCACTCATAC 61.065 63.158 0.00 0.00 0.00 2.39
205 206 2.063979 CACCTCGCCCCCACTCATA 61.064 63.158 0.00 0.00 0.00 2.15
206 207 3.402681 CACCTCGCCCCCACTCAT 61.403 66.667 0.00 0.00 0.00 2.90
214 215 4.410400 CTTCCCACCACCTCGCCC 62.410 72.222 0.00 0.00 0.00 6.13
215 216 2.406002 TTTCTTCCCACCACCTCGCC 62.406 60.000 0.00 0.00 0.00 5.54
216 217 0.955919 CTTTCTTCCCACCACCTCGC 60.956 60.000 0.00 0.00 0.00 5.03
217 218 0.321653 CCTTTCTTCCCACCACCTCG 60.322 60.000 0.00 0.00 0.00 4.63
218 219 0.038310 CCCTTTCTTCCCACCACCTC 59.962 60.000 0.00 0.00 0.00 3.85
219 220 0.402861 TCCCTTTCTTCCCACCACCT 60.403 55.000 0.00 0.00 0.00 4.00
220 221 0.251209 GTCCCTTTCTTCCCACCACC 60.251 60.000 0.00 0.00 0.00 4.61
221 222 0.605589 CGTCCCTTTCTTCCCACCAC 60.606 60.000 0.00 0.00 0.00 4.16
222 223 0.765135 TCGTCCCTTTCTTCCCACCA 60.765 55.000 0.00 0.00 0.00 4.17
223 224 0.618981 ATCGTCCCTTTCTTCCCACC 59.381 55.000 0.00 0.00 0.00 4.61
224 225 1.679032 CCATCGTCCCTTTCTTCCCAC 60.679 57.143 0.00 0.00 0.00 4.61
225 226 0.618458 CCATCGTCCCTTTCTTCCCA 59.382 55.000 0.00 0.00 0.00 4.37
226 227 0.909623 TCCATCGTCCCTTTCTTCCC 59.090 55.000 0.00 0.00 0.00 3.97
227 228 1.744114 GCTCCATCGTCCCTTTCTTCC 60.744 57.143 0.00 0.00 0.00 3.46
228 229 1.066143 TGCTCCATCGTCCCTTTCTTC 60.066 52.381 0.00 0.00 0.00 2.87
229 230 0.984230 TGCTCCATCGTCCCTTTCTT 59.016 50.000 0.00 0.00 0.00 2.52
230 231 0.539051 CTGCTCCATCGTCCCTTTCT 59.461 55.000 0.00 0.00 0.00 2.52
231 232 0.462759 CCTGCTCCATCGTCCCTTTC 60.463 60.000 0.00 0.00 0.00 2.62
232 233 1.604378 CCTGCTCCATCGTCCCTTT 59.396 57.895 0.00 0.00 0.00 3.11
233 234 3.036429 GCCTGCTCCATCGTCCCTT 62.036 63.158 0.00 0.00 0.00 3.95
234 235 3.474570 GCCTGCTCCATCGTCCCT 61.475 66.667 0.00 0.00 0.00 4.20
235 236 4.554036 GGCCTGCTCCATCGTCCC 62.554 72.222 0.00 0.00 0.00 4.46
236 237 3.746949 CTGGCCTGCTCCATCGTCC 62.747 68.421 3.32 0.00 35.22 4.79
237 238 2.202987 CTGGCCTGCTCCATCGTC 60.203 66.667 3.32 0.00 35.22 4.20
238 239 4.479993 GCTGGCCTGCTCCATCGT 62.480 66.667 25.99 0.00 35.22 3.73
240 241 4.166888 TCGCTGGCCTGCTCCATC 62.167 66.667 29.18 3.02 35.22 3.51
241 242 4.479993 GTCGCTGGCCTGCTCCAT 62.480 66.667 29.18 0.00 35.22 3.41
247 248 4.514577 CTACCCGTCGCTGGCCTG 62.515 72.222 3.32 4.26 0.00 4.85
248 249 4.753662 TCTACCCGTCGCTGGCCT 62.754 66.667 3.32 0.00 0.00 5.19
249 250 4.208686 CTCTACCCGTCGCTGGCC 62.209 72.222 0.00 0.00 0.00 5.36
250 251 4.208686 CCTCTACCCGTCGCTGGC 62.209 72.222 0.00 0.00 0.00 4.85
251 252 3.528370 CCCTCTACCCGTCGCTGG 61.528 72.222 0.00 0.00 0.00 4.85
252 253 2.439701 TCCCTCTACCCGTCGCTG 60.440 66.667 0.00 0.00 0.00 5.18
253 254 2.124236 CTCCCTCTACCCGTCGCT 60.124 66.667 0.00 0.00 0.00 4.93
254 255 2.124403 TCTCCCTCTACCCGTCGC 60.124 66.667 0.00 0.00 0.00 5.19
255 256 1.526455 CCTCTCCCTCTACCCGTCG 60.526 68.421 0.00 0.00 0.00 5.12
256 257 1.829096 GCCTCTCCCTCTACCCGTC 60.829 68.421 0.00 0.00 0.00 4.79
257 258 2.279408 GCCTCTCCCTCTACCCGT 59.721 66.667 0.00 0.00 0.00 5.28
258 259 2.522193 GGCCTCTCCCTCTACCCG 60.522 72.222 0.00 0.00 0.00 5.28
259 260 2.374781 ATCGGCCTCTCCCTCTACCC 62.375 65.000 0.00 0.00 0.00 3.69
260 261 1.154221 ATCGGCCTCTCCCTCTACC 59.846 63.158 0.00 0.00 0.00 3.18
261 262 0.178987 TCATCGGCCTCTCCCTCTAC 60.179 60.000 0.00 0.00 0.00 2.59
262 263 0.178987 GTCATCGGCCTCTCCCTCTA 60.179 60.000 0.00 0.00 0.00 2.43
263 264 1.456705 GTCATCGGCCTCTCCCTCT 60.457 63.158 0.00 0.00 0.00 3.69
264 265 2.851071 CGTCATCGGCCTCTCCCTC 61.851 68.421 0.00 0.00 0.00 4.30
265 266 2.835431 CGTCATCGGCCTCTCCCT 60.835 66.667 0.00 0.00 0.00 4.20
266 267 2.833582 TCGTCATCGGCCTCTCCC 60.834 66.667 0.00 0.00 37.69 4.30
267 268 2.725008 CTCGTCATCGGCCTCTCC 59.275 66.667 0.00 0.00 37.69 3.71
268 269 1.791103 CTCCTCGTCATCGGCCTCTC 61.791 65.000 0.00 0.00 37.69 3.20
269 270 1.826054 CTCCTCGTCATCGGCCTCT 60.826 63.158 0.00 0.00 37.69 3.69
270 271 1.791103 CTCTCCTCGTCATCGGCCTC 61.791 65.000 0.00 0.00 37.69 4.70
271 272 1.826054 CTCTCCTCGTCATCGGCCT 60.826 63.158 0.00 0.00 37.69 5.19
272 273 2.725008 CTCTCCTCGTCATCGGCC 59.275 66.667 0.00 0.00 37.69 6.13
273 274 1.384989 TTCCTCTCCTCGTCATCGGC 61.385 60.000 0.00 0.00 37.69 5.54
274 275 0.665835 CTTCCTCTCCTCGTCATCGG 59.334 60.000 0.00 0.00 37.69 4.18
275 276 1.601903 CTCTTCCTCTCCTCGTCATCG 59.398 57.143 0.00 0.00 38.55 3.84
276 277 1.953686 CCTCTTCCTCTCCTCGTCATC 59.046 57.143 0.00 0.00 0.00 2.92
277 278 1.410932 CCCTCTTCCTCTCCTCGTCAT 60.411 57.143 0.00 0.00 0.00 3.06
278 279 0.033991 CCCTCTTCCTCTCCTCGTCA 60.034 60.000 0.00 0.00 0.00 4.35
279 280 1.388837 GCCCTCTTCCTCTCCTCGTC 61.389 65.000 0.00 0.00 0.00 4.20
280 281 1.380650 GCCCTCTTCCTCTCCTCGT 60.381 63.158 0.00 0.00 0.00 4.18
281 282 2.485795 CGCCCTCTTCCTCTCCTCG 61.486 68.421 0.00 0.00 0.00 4.63
282 283 2.131067 CCGCCCTCTTCCTCTCCTC 61.131 68.421 0.00 0.00 0.00 3.71
283 284 2.042435 CCGCCCTCTTCCTCTCCT 60.042 66.667 0.00 0.00 0.00 3.69
284 285 2.364448 ACCGCCCTCTTCCTCTCC 60.364 66.667 0.00 0.00 0.00 3.71
285 286 1.045911 ATCACCGCCCTCTTCCTCTC 61.046 60.000 0.00 0.00 0.00 3.20
286 287 1.002274 ATCACCGCCCTCTTCCTCT 59.998 57.895 0.00 0.00 0.00 3.69
287 288 1.144936 CATCACCGCCCTCTTCCTC 59.855 63.158 0.00 0.00 0.00 3.71
288 289 1.306141 TCATCACCGCCCTCTTCCT 60.306 57.895 0.00 0.00 0.00 3.36
289 290 1.144936 CTCATCACCGCCCTCTTCC 59.855 63.158 0.00 0.00 0.00 3.46
290 291 1.144936 CCTCATCACCGCCCTCTTC 59.855 63.158 0.00 0.00 0.00 2.87
291 292 1.306141 TCCTCATCACCGCCCTCTT 60.306 57.895 0.00 0.00 0.00 2.85
292 293 1.760086 CTCCTCATCACCGCCCTCT 60.760 63.158 0.00 0.00 0.00 3.69
293 294 1.743321 CTCTCCTCATCACCGCCCTC 61.743 65.000 0.00 0.00 0.00 4.30
294 295 1.760086 CTCTCCTCATCACCGCCCT 60.760 63.158 0.00 0.00 0.00 5.19
295 296 2.801631 CCTCTCCTCATCACCGCCC 61.802 68.421 0.00 0.00 0.00 6.13
296 297 2.801631 CCCTCTCCTCATCACCGCC 61.802 68.421 0.00 0.00 0.00 6.13
297 298 1.743321 CTCCCTCTCCTCATCACCGC 61.743 65.000 0.00 0.00 0.00 5.68
298 299 0.106469 TCTCCCTCTCCTCATCACCG 60.106 60.000 0.00 0.00 0.00 4.94
299 300 1.703411 CTCTCCCTCTCCTCATCACC 58.297 60.000 0.00 0.00 0.00 4.02
300 301 1.703411 CCTCTCCCTCTCCTCATCAC 58.297 60.000 0.00 0.00 0.00 3.06
301 302 0.560193 CCCTCTCCCTCTCCTCATCA 59.440 60.000 0.00 0.00 0.00 3.07
302 303 0.831711 GCCCTCTCCCTCTCCTCATC 60.832 65.000 0.00 0.00 0.00 2.92
303 304 1.235696 GCCCTCTCCCTCTCCTCAT 59.764 63.158 0.00 0.00 0.00 2.90
304 305 2.693017 GCCCTCTCCCTCTCCTCA 59.307 66.667 0.00 0.00 0.00 3.86
305 306 2.520741 CGCCCTCTCCCTCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
306 307 4.150454 CCGCCCTCTCCCTCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
314 315 4.200283 CTCTGTCGCCGCCCTCTC 62.200 72.222 0.00 0.00 0.00 3.20
321 322 3.522731 CTCTCCCCTCTGTCGCCG 61.523 72.222 0.00 0.00 0.00 6.46
322 323 3.151022 CCTCTCCCCTCTGTCGCC 61.151 72.222 0.00 0.00 0.00 5.54
323 324 2.937959 ATCCCTCTCCCCTCTGTCGC 62.938 65.000 0.00 0.00 0.00 5.19
324 325 0.397816 AATCCCTCTCCCCTCTGTCG 60.398 60.000 0.00 0.00 0.00 4.35
325 326 1.127343 CAATCCCTCTCCCCTCTGTC 58.873 60.000 0.00 0.00 0.00 3.51
326 327 0.327000 CCAATCCCTCTCCCCTCTGT 60.327 60.000 0.00 0.00 0.00 3.41
327 328 1.059006 CCCAATCCCTCTCCCCTCTG 61.059 65.000 0.00 0.00 0.00 3.35
328 329 1.238896 TCCCAATCCCTCTCCCCTCT 61.239 60.000 0.00 0.00 0.00 3.69
329 330 0.766288 CTCCCAATCCCTCTCCCCTC 60.766 65.000 0.00 0.00 0.00 4.30
330 331 1.238896 TCTCCCAATCCCTCTCCCCT 61.239 60.000 0.00 0.00 0.00 4.79
331 332 0.766288 CTCTCCCAATCCCTCTCCCC 60.766 65.000 0.00 0.00 0.00 4.81
332 333 1.414866 GCTCTCCCAATCCCTCTCCC 61.415 65.000 0.00 0.00 0.00 4.30
333 334 1.753368 CGCTCTCCCAATCCCTCTCC 61.753 65.000 0.00 0.00 0.00 3.71
334 335 1.745264 CGCTCTCCCAATCCCTCTC 59.255 63.158 0.00 0.00 0.00 3.20
335 336 1.764054 CCGCTCTCCCAATCCCTCT 60.764 63.158 0.00 0.00 0.00 3.69
336 337 2.825264 CCGCTCTCCCAATCCCTC 59.175 66.667 0.00 0.00 0.00 4.30
337 338 3.483869 GCCGCTCTCCCAATCCCT 61.484 66.667 0.00 0.00 0.00 4.20
338 339 4.918201 CGCCGCTCTCCCAATCCC 62.918 72.222 0.00 0.00 0.00 3.85
339 340 3.849951 TCGCCGCTCTCCCAATCC 61.850 66.667 0.00 0.00 0.00 3.01
340 341 2.586357 GTCGCCGCTCTCCCAATC 60.586 66.667 0.00 0.00 0.00 2.67
341 342 4.514577 CGTCGCCGCTCTCCCAAT 62.515 66.667 0.00 0.00 0.00 3.16
351 352 4.891727 CAATCCTCCCCGTCGCCG 62.892 72.222 0.00 0.00 0.00 6.46
352 353 4.547367 CCAATCCTCCCCGTCGCC 62.547 72.222 0.00 0.00 0.00 5.54
353 354 4.547367 CCCAATCCTCCCCGTCGC 62.547 72.222 0.00 0.00 0.00 5.19
354 355 2.762459 TCCCAATCCTCCCCGTCG 60.762 66.667 0.00 0.00 0.00 5.12
355 356 1.382695 TCTCCCAATCCTCCCCGTC 60.383 63.158 0.00 0.00 0.00 4.79
356 357 1.383248 CTCTCCCAATCCTCCCCGT 60.383 63.158 0.00 0.00 0.00 5.28
357 358 1.383248 ACTCTCCCAATCCTCCCCG 60.383 63.158 0.00 0.00 0.00 5.73
358 359 1.348775 CCACTCTCCCAATCCTCCCC 61.349 65.000 0.00 0.00 0.00 4.81
359 360 1.988982 GCCACTCTCCCAATCCTCCC 61.989 65.000 0.00 0.00 0.00 4.30
360 361 1.529309 GCCACTCTCCCAATCCTCC 59.471 63.158 0.00 0.00 0.00 4.30
361 362 1.144936 CGCCACTCTCCCAATCCTC 59.855 63.158 0.00 0.00 0.00 3.71
362 363 1.306141 TCGCCACTCTCCCAATCCT 60.306 57.895 0.00 0.00 0.00 3.24
363 364 1.144936 CTCGCCACTCTCCCAATCC 59.855 63.158 0.00 0.00 0.00 3.01
364 365 1.522580 GCTCGCCACTCTCCCAATC 60.523 63.158 0.00 0.00 0.00 2.67
365 366 1.841302 TTGCTCGCCACTCTCCCAAT 61.841 55.000 0.00 0.00 0.00 3.16
366 367 2.454832 CTTGCTCGCCACTCTCCCAA 62.455 60.000 0.00 0.00 0.00 4.12
367 368 2.922503 TTGCTCGCCACTCTCCCA 60.923 61.111 0.00 0.00 0.00 4.37
368 369 2.125350 CTTGCTCGCCACTCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
369 370 2.817396 GCTTGCTCGCCACTCTCC 60.817 66.667 0.00 0.00 0.00 3.71
370 371 3.184683 CGCTTGCTCGCCACTCTC 61.185 66.667 0.00 0.00 0.00 3.20
371 372 3.639541 CTCGCTTGCTCGCCACTCT 62.640 63.158 0.00 0.00 0.00 3.24
372 373 3.184683 CTCGCTTGCTCGCCACTC 61.185 66.667 0.00 0.00 0.00 3.51
374 375 3.989698 TAGCTCGCTTGCTCGCCAC 62.990 63.158 3.59 0.00 42.97 5.01
375 376 3.706563 CTAGCTCGCTTGCTCGCCA 62.707 63.158 3.59 0.00 42.97 5.69
376 377 2.959071 CTAGCTCGCTTGCTCGCC 60.959 66.667 3.59 0.00 42.97 5.54
377 378 2.202676 ACTAGCTCGCTTGCTCGC 60.203 61.111 3.59 0.00 42.97 5.03
378 379 1.875813 CCACTAGCTCGCTTGCTCG 60.876 63.158 3.59 1.26 42.97 5.03
379 380 1.520342 CCCACTAGCTCGCTTGCTC 60.520 63.158 3.59 0.00 42.97 4.26
380 381 1.954362 CTCCCACTAGCTCGCTTGCT 61.954 60.000 0.00 5.67 46.11 3.91
381 382 1.520342 CTCCCACTAGCTCGCTTGC 60.520 63.158 0.00 0.00 0.00 4.01
382 383 1.520342 GCTCCCACTAGCTCGCTTG 60.520 63.158 0.00 0.00 39.50 4.01
383 384 1.544825 TTGCTCCCACTAGCTCGCTT 61.545 55.000 0.00 0.00 43.19 4.68
384 385 1.954362 CTTGCTCCCACTAGCTCGCT 61.954 60.000 0.00 0.00 43.19 4.93
385 386 1.520342 CTTGCTCCCACTAGCTCGC 60.520 63.158 0.00 0.00 43.19 5.03
386 387 1.520342 GCTTGCTCCCACTAGCTCG 60.520 63.158 0.00 0.00 43.19 5.03
387 388 1.520342 CGCTTGCTCCCACTAGCTC 60.520 63.158 0.00 0.00 43.19 4.09
388 389 1.954362 CTCGCTTGCTCCCACTAGCT 61.954 60.000 0.00 0.00 43.19 3.32
389 390 1.520342 CTCGCTTGCTCCCACTAGC 60.520 63.158 0.00 0.00 43.08 3.42
390 391 1.520342 GCTCGCTTGCTCCCACTAG 60.520 63.158 0.00 0.00 0.00 2.57
391 392 1.826340 TTGCTCGCTTGCTCCCACTA 61.826 55.000 0.00 0.00 0.00 2.74
392 393 3.182590 TTGCTCGCTTGCTCCCACT 62.183 57.895 0.00 0.00 0.00 4.00
393 394 2.669569 TTGCTCGCTTGCTCCCAC 60.670 61.111 0.00 0.00 0.00 4.61
394 395 2.359107 CTTGCTCGCTTGCTCCCA 60.359 61.111 0.00 0.00 0.00 4.37
395 396 2.859273 TAGCTTGCTCGCTTGCTCCC 62.859 60.000 11.12 0.00 41.30 4.30
396 397 1.427592 CTAGCTTGCTCGCTTGCTCC 61.428 60.000 11.12 0.00 41.30 4.70
397 398 0.739112 ACTAGCTTGCTCGCTTGCTC 60.739 55.000 11.12 0.00 41.30 4.26
398 399 1.018226 CACTAGCTTGCTCGCTTGCT 61.018 55.000 5.67 12.10 41.30 3.91
399 400 1.423056 CACTAGCTTGCTCGCTTGC 59.577 57.895 5.67 0.00 41.30 4.01
400 401 1.423056 GCACTAGCTTGCTCGCTTG 59.577 57.895 3.04 6.66 41.30 4.01
401 402 2.097038 CGCACTAGCTTGCTCGCTT 61.097 57.895 8.67 0.00 41.30 4.68
402 403 2.507992 CGCACTAGCTTGCTCGCT 60.508 61.111 8.67 5.67 43.83 4.93
403 404 2.507102 TCGCACTAGCTTGCTCGC 60.507 61.111 8.67 2.29 40.62 5.03
404 405 2.512301 GCTCGCACTAGCTTGCTCG 61.512 63.158 8.67 6.14 40.62 5.03
405 406 2.512301 CGCTCGCACTAGCTTGCTC 61.512 63.158 8.67 0.00 40.62 4.26
406 407 2.507992 CGCTCGCACTAGCTTGCT 60.508 61.111 8.67 0.00 40.62 3.91
407 408 2.507102 TCGCTCGCACTAGCTTGC 60.507 61.111 0.00 0.00 40.49 4.01
408 409 1.153939 ACTCGCTCGCACTAGCTTG 60.154 57.895 0.00 0.00 40.49 4.01
409 410 1.153939 CACTCGCTCGCACTAGCTT 60.154 57.895 0.00 0.00 40.49 3.74
410 411 2.487428 CACTCGCTCGCACTAGCT 59.513 61.111 0.00 0.00 40.49 3.32
411 412 2.580867 CCACTCGCTCGCACTAGC 60.581 66.667 0.00 0.00 39.21 3.42
412 413 2.103143 CCCACTCGCTCGCACTAG 59.897 66.667 0.00 0.00 0.00 2.57
413 414 2.360726 TCCCACTCGCTCGCACTA 60.361 61.111 0.00 0.00 0.00 2.74
414 415 3.753434 CTCCCACTCGCTCGCACT 61.753 66.667 0.00 0.00 0.00 4.40
415 416 4.803426 CCTCCCACTCGCTCGCAC 62.803 72.222 0.00 0.00 0.00 5.34
419 420 2.748058 TTTTGCCCTCCCACTCGCTC 62.748 60.000 0.00 0.00 0.00 5.03
420 421 2.829384 TTTTGCCCTCCCACTCGCT 61.829 57.895 0.00 0.00 0.00 4.93
421 422 2.282180 TTTTGCCCTCCCACTCGC 60.282 61.111 0.00 0.00 0.00 5.03
422 423 1.228124 TGTTTTGCCCTCCCACTCG 60.228 57.895 0.00 0.00 0.00 4.18
423 424 0.895559 CCTGTTTTGCCCTCCCACTC 60.896 60.000 0.00 0.00 0.00 3.51
424 425 1.153756 CCTGTTTTGCCCTCCCACT 59.846 57.895 0.00 0.00 0.00 4.00
425 426 0.469144 TTCCTGTTTTGCCCTCCCAC 60.469 55.000 0.00 0.00 0.00 4.61
426 427 0.263172 TTTCCTGTTTTGCCCTCCCA 59.737 50.000 0.00 0.00 0.00 4.37
427 428 0.969149 CTTTCCTGTTTTGCCCTCCC 59.031 55.000 0.00 0.00 0.00 4.30
428 429 1.341209 CACTTTCCTGTTTTGCCCTCC 59.659 52.381 0.00 0.00 0.00 4.30
429 430 2.306847 TCACTTTCCTGTTTTGCCCTC 58.693 47.619 0.00 0.00 0.00 4.30
430 431 2.452600 TCACTTTCCTGTTTTGCCCT 57.547 45.000 0.00 0.00 0.00 5.19
431 432 3.751479 AATCACTTTCCTGTTTTGCCC 57.249 42.857 0.00 0.00 0.00 5.36
453 454 9.638239 AGTACTAATTCCGTCACGTTATAAAAA 57.362 29.630 0.00 0.00 0.00 1.94
454 455 9.075519 CAGTACTAATTCCGTCACGTTATAAAA 57.924 33.333 0.00 0.00 0.00 1.52
455 456 7.701924 CCAGTACTAATTCCGTCACGTTATAAA 59.298 37.037 0.00 0.00 0.00 1.40
456 457 7.195646 CCAGTACTAATTCCGTCACGTTATAA 58.804 38.462 0.00 0.00 0.00 0.98
457 458 6.238731 CCCAGTACTAATTCCGTCACGTTATA 60.239 42.308 0.00 0.00 0.00 0.98
458 459 5.450965 CCCAGTACTAATTCCGTCACGTTAT 60.451 44.000 0.00 0.00 0.00 1.89
459 460 4.142403 CCCAGTACTAATTCCGTCACGTTA 60.142 45.833 0.00 0.00 0.00 3.18
460 461 3.367703 CCCAGTACTAATTCCGTCACGTT 60.368 47.826 0.00 0.00 0.00 3.99
461 462 2.165030 CCCAGTACTAATTCCGTCACGT 59.835 50.000 0.00 0.00 0.00 4.49
462 463 2.165030 ACCCAGTACTAATTCCGTCACG 59.835 50.000 0.00 0.00 0.00 4.35
463 464 3.881937 ACCCAGTACTAATTCCGTCAC 57.118 47.619 0.00 0.00 0.00 3.67
464 465 3.618019 GCAACCCAGTACTAATTCCGTCA 60.618 47.826 0.00 0.00 0.00 4.35
465 466 2.934553 GCAACCCAGTACTAATTCCGTC 59.065 50.000 0.00 0.00 0.00 4.79
466 467 2.355412 GGCAACCCAGTACTAATTCCGT 60.355 50.000 0.00 0.00 0.00 4.69
467 468 2.285977 GGCAACCCAGTACTAATTCCG 58.714 52.381 0.00 0.00 0.00 4.30
482 483 2.939460 AATAATTGTCGCTGGGCAAC 57.061 45.000 4.34 0.00 0.00 4.17
483 484 2.159448 CGAAATAATTGTCGCTGGGCAA 60.159 45.455 0.00 4.63 0.00 4.52
484 485 1.400142 CGAAATAATTGTCGCTGGGCA 59.600 47.619 0.00 0.00 0.00 5.36
485 486 1.268539 CCGAAATAATTGTCGCTGGGC 60.269 52.381 3.30 0.00 35.93 5.36
486 487 2.285083 TCCGAAATAATTGTCGCTGGG 58.715 47.619 3.30 0.00 35.93 4.45
487 488 3.126171 TGTTCCGAAATAATTGTCGCTGG 59.874 43.478 3.30 0.00 35.93 4.85
488 489 4.092821 TCTGTTCCGAAATAATTGTCGCTG 59.907 41.667 3.30 0.00 35.93 5.18
489 490 4.250464 TCTGTTCCGAAATAATTGTCGCT 58.750 39.130 3.30 0.00 35.93 4.93
490 491 4.494199 CCTCTGTTCCGAAATAATTGTCGC 60.494 45.833 3.30 0.00 35.93 5.19
491 492 4.034048 CCCTCTGTTCCGAAATAATTGTCG 59.966 45.833 0.00 0.00 37.01 4.35
492 493 5.183228 TCCCTCTGTTCCGAAATAATTGTC 58.817 41.667 0.00 0.00 0.00 3.18
493 494 5.174037 TCCCTCTGTTCCGAAATAATTGT 57.826 39.130 0.00 0.00 0.00 2.71
494 495 5.186198 ACTCCCTCTGTTCCGAAATAATTG 58.814 41.667 0.00 0.00 0.00 2.32
495 496 5.437191 ACTCCCTCTGTTCCGAAATAATT 57.563 39.130 0.00 0.00 0.00 1.40
496 497 5.661759 ACTACTCCCTCTGTTCCGAAATAAT 59.338 40.000 0.00 0.00 0.00 1.28
497 498 5.021458 ACTACTCCCTCTGTTCCGAAATAA 58.979 41.667 0.00 0.00 0.00 1.40
498 499 4.607239 ACTACTCCCTCTGTTCCGAAATA 58.393 43.478 0.00 0.00 0.00 1.40
499 500 3.442076 ACTACTCCCTCTGTTCCGAAAT 58.558 45.455 0.00 0.00 0.00 2.17
500 501 2.885616 ACTACTCCCTCTGTTCCGAAA 58.114 47.619 0.00 0.00 0.00 3.46
501 502 2.599408 ACTACTCCCTCTGTTCCGAA 57.401 50.000 0.00 0.00 0.00 4.30
502 503 2.224942 TGAACTACTCCCTCTGTTCCGA 60.225 50.000 0.00 0.00 38.29 4.55
503 504 2.164624 CTGAACTACTCCCTCTGTTCCG 59.835 54.545 0.00 0.00 38.29 4.30
504 505 3.166679 ACTGAACTACTCCCTCTGTTCC 58.833 50.000 0.00 0.00 38.29 3.62
505 506 3.827302 TGACTGAACTACTCCCTCTGTTC 59.173 47.826 0.00 0.00 39.18 3.18
506 507 3.829601 CTGACTGAACTACTCCCTCTGTT 59.170 47.826 0.00 0.00 0.00 3.16
507 508 3.074687 TCTGACTGAACTACTCCCTCTGT 59.925 47.826 0.00 0.00 0.00 3.41
508 509 3.442273 GTCTGACTGAACTACTCCCTCTG 59.558 52.174 0.00 0.00 0.00 3.35
509 510 3.332485 AGTCTGACTGAACTACTCCCTCT 59.668 47.826 10.00 0.00 0.00 3.69
510 511 3.692690 AGTCTGACTGAACTACTCCCTC 58.307 50.000 10.00 0.00 0.00 4.30
511 512 3.818295 AGTCTGACTGAACTACTCCCT 57.182 47.619 10.00 0.00 0.00 4.20
512 513 4.875561 AAAGTCTGACTGAACTACTCCC 57.124 45.455 11.71 0.00 0.00 4.30
513 514 5.602628 ACAAAAGTCTGACTGAACTACTCC 58.397 41.667 11.71 0.00 0.00 3.85
514 515 7.541122 AAACAAAAGTCTGACTGAACTACTC 57.459 36.000 11.71 0.00 0.00 2.59
515 516 7.923414 AAAACAAAAGTCTGACTGAACTACT 57.077 32.000 11.71 0.00 0.00 2.57
534 535 8.948631 TGGTGCTTATTGATTGTTTAAAAACA 57.051 26.923 4.19 4.19 46.35 2.83
552 557 3.705604 CGTGTTTCAGAAATTGGTGCTT 58.294 40.909 0.00 0.00 0.00 3.91
555 560 2.223688 TGGCGTGTTTCAGAAATTGGTG 60.224 45.455 0.00 0.00 0.00 4.17
557 562 2.791383 TGGCGTGTTTCAGAAATTGG 57.209 45.000 0.00 0.00 0.00 3.16
627 632 0.751643 AGCATTCCGGTGGTAATGGC 60.752 55.000 13.69 7.48 34.37 4.40
638 643 1.129998 CTCAACTCAAGCAGCATTCCG 59.870 52.381 0.00 0.00 0.00 4.30
643 648 3.130280 TGATTCTCAACTCAAGCAGCA 57.870 42.857 0.00 0.00 0.00 4.41
653 658 6.925610 TGTATATGGTGCTTGATTCTCAAC 57.074 37.500 0.00 0.00 32.21 3.18
927 951 2.485302 GGAGTGCAACCAAAGCCAAATT 60.485 45.455 6.35 0.00 37.80 1.82
970 1012 6.627087 AGAGATGAAGTAGAAAACCATGGA 57.373 37.500 21.47 0.00 0.00 3.41
976 1018 6.618811 TGGACGTAGAGATGAAGTAGAAAAC 58.381 40.000 0.00 0.00 0.00 2.43
986 1029 3.866703 ATCTCCTGGACGTAGAGATGA 57.133 47.619 15.25 5.39 43.90 2.92
994 1038 2.741145 AGAGCTTTATCTCCTGGACGT 58.259 47.619 0.00 0.00 33.66 4.34
1007 1051 3.567478 AACAGGACAGTGAAGAGCTTT 57.433 42.857 0.00 0.00 0.00 3.51
1415 1525 2.017049 GATGAAAACATCCCCCTCACG 58.983 52.381 0.00 0.00 0.00 4.35
1835 1947 0.876342 GAAAGAGCCTATGCCGACGG 60.876 60.000 10.29 10.29 38.69 4.79
1901 2013 3.057456 ACAGTCTTACAAGAGTACGCTGG 60.057 47.826 0.00 0.00 36.59 4.85
2022 2134 2.746277 GGTGAAGGCGCCGTCAAT 60.746 61.111 40.26 18.00 36.32 2.57
2266 2415 6.361748 AGTCGTCGACATAGTTTTTGAACTAC 59.638 38.462 26.17 0.00 38.01 2.73
2288 2437 0.596859 GCTATGCCGACGGGTAAGTC 60.597 60.000 17.22 0.00 37.76 3.01
2391 2541 5.833131 AGAAAAAGAGCAAACAGGGAATACA 59.167 36.000 0.00 0.00 0.00 2.29
2405 2555 7.524294 TGTTGTCAAATTGAAGAAAAAGAGC 57.476 32.000 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.