AutoCloner

Multiple sequence alignment - TraesCS3B01G074200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G074200	chr3B	100.000	2956	0	0	1	2956	45199916	45196961	0.000000e+00	5459.0
1	TraesCS3B01G074200	chr3B	92.336	822	63	0	1	822	45262167	45261346	0.000000e+00	1170.0
2	TraesCS3B01G074200	chr3B	84.129	901	102	24	914	1803	44848444	44847574	0.000000e+00	833.0
3	TraesCS3B01G074200	chr3B	97.059	34	1	0	1940	1973	773566485	773566518	1.140000e-04	58.4
4	TraesCS3B01G074200	chr3D	85.706	1679	155	35	957	2613	26689924	26688309	0.000000e+00	1692.0
5	TraesCS3B01G074200	chr3D	88.168	1048	103	15	957	1994	26649802	26648766	0.000000e+00	1229.0
6	TraesCS3B01G074200	chr3D	91.646	826	63	6	1	822	540002040	540001217	0.000000e+00	1138.0
7	TraesCS3B01G074200	chr3D	87.102	566	49	10	2104	2669	26648748	26648207	1.160000e-173	619.0
8	TraesCS3B01G074200	chr3D	89.583	336	18	1	818	1136	26608414	26608079	7.630000e-111	411.0
9	TraesCS3B01G074200	chr3D	82.124	386	52	12	875	1256	26739251	26738879	6.150000e-82	315.0
10	TraesCS3B01G074200	chr3D	83.843	229	27	5	2738	2956	137838638	137838866	2.990000e-50	209.0
11	TraesCS3B01G074200	chr3D	97.059	34	1	0	1940	1973	579303123	579303156	1.140000e-04	58.4
12	TraesCS3B01G074200	chrUn	88.332	1217	91	18	820	2013	38820601	38821789	0.000000e+00	1413.0
13	TraesCS3B01G074200	chrUn	89.040	1104	96	7	818	1903	38808281	38809377	0.000000e+00	1345.0
14	TraesCS3B01G074200	chrUn	89.716	914	79	5	2053	2956	38815181	38816089	0.000000e+00	1153.0
15	TraesCS3B01G074200	chrUn	90.647	866	67	4	2097	2956	38821810	38822667	0.000000e+00	1138.0
16	TraesCS3B01G074200	chrUn	91.646	826	63	6	1	822	335639259	335638436	0.000000e+00	1138.0
17	TraesCS3B01G074200	chrUn	81.474	475	58	15	2140	2606	55588232	55588684	2.170000e-96	363.0
18	TraesCS3B01G074200	chrUn	81.513	238	39	3	2140	2377	71526916	71527148	1.080000e-44	191.0
19	TraesCS3B01G074200	chrUn	81.513	238	39	3	2140	2377	245548828	245548596	1.080000e-44	191.0
20	TraesCS3B01G074200	chrUn	81.513	238	39	3	2140	2377	280861713	280861481	1.080000e-44	191.0
21	TraesCS3B01G074200	chr3A	87.879	1188	103	20	974	2141	36771075	36769909	0.000000e+00	1358.0
22	TraesCS3B01G074200	chr3A	88.704	540	52	4	821	1360	36722505	36721975	0.000000e+00	651.0
23	TraesCS3B01G074200	chr5D	92.000	825	61	5	1	822	352404551	352405373	0.000000e+00	1153.0
24	TraesCS3B01G074200	chr6D	91.646	826	63	6	1	822	6803101	6802278	0.000000e+00	1138.0
25	TraesCS3B01G074200	chr4D	91.646	826	63	6	1	822	415967906	415968729	0.000000e+00	1138.0
26	TraesCS3B01G074200	chr4D	91.646	826	63	6	1	822	415975277	415976100	0.000000e+00	1138.0
27	TraesCS3B01G074200	chr4D	80.909	220	33	6	2745	2956	325121836	325121618	6.550000e-37	165.0
28	TraesCS3B01G074200	chr1D	91.646	826	63	6	1	822	6150020	6149197	0.000000e+00	1138.0
29	TraesCS3B01G074200	chr1D	91.646	826	63	6	1	822	489009473	489010296	0.000000e+00	1138.0
30	TraesCS3B01G074200	chr1B	82.828	792	99	20	1107	1883	636680042	636679273	0.000000e+00	675.0
31	TraesCS3B01G074200	chr7A	84.861	469	59	10	2139	2600	117752594	117752131	2.080000e-126	462.0
32	TraesCS3B01G074200	chr7A	80.427	281	45	8	2140	2418	94207413	94207141	3.860000e-49	206.0
33	TraesCS3B01G074200	chr7D	83.974	468	63	11	2140	2600	628671627	628672089	3.500000e-119	438.0
34	TraesCS3B01G074200	chr7D	95.455	66	3	0	2601	2666	628672124	628672189	4.030000e-19	106.0
35	TraesCS3B01G074200	chr1A	82.843	408	54	10	1481	1883	553903117	553902721	4.690000e-93	351.0
36	TraesCS3B01G074200	chr5A	83.133	83	9	4	2519	2599	451391740	451391661	1.470000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G074200	chr3B	45196961	45199916	2955	True	5459.0	5459	100.0000	1	2956	1	chr3B.!!$R2	2955
1	TraesCS3B01G074200	chr3B	45261346	45262167	821	True	1170.0	1170	92.3360	1	822	1	chr3B.!!$R3	821
2	TraesCS3B01G074200	chr3B	44847574	44848444	870	True	833.0	833	84.1290	914	1803	1	chr3B.!!$R1	889
3	TraesCS3B01G074200	chr3D	26688309	26689924	1615	True	1692.0	1692	85.7060	957	2613	1	chr3D.!!$R2	1656
4	TraesCS3B01G074200	chr3D	540001217	540002040	823	True	1138.0	1138	91.6460	1	822	1	chr3D.!!$R4	821
5	TraesCS3B01G074200	chr3D	26648207	26649802	1595	True	924.0	1229	87.6350	957	2669	2	chr3D.!!$R5	1712
6	TraesCS3B01G074200	chrUn	38808281	38809377	1096	False	1345.0	1345	89.0400	818	1903	1	chrUn.!!$F1	1085
7	TraesCS3B01G074200	chrUn	38820601	38822667	2066	False	1275.5	1413	89.4895	820	2956	2	chrUn.!!$F5	2136
8	TraesCS3B01G074200	chrUn	38815181	38816089	908	False	1153.0	1153	89.7160	2053	2956	1	chrUn.!!$F2	903
9	TraesCS3B01G074200	chrUn	335638436	335639259	823	True	1138.0	1138	91.6460	1	822	1	chrUn.!!$R3	821
10	TraesCS3B01G074200	chr3A	36769909	36771075	1166	True	1358.0	1358	87.8790	974	2141	1	chr3A.!!$R2	1167
11	TraesCS3B01G074200	chr3A	36721975	36722505	530	True	651.0	651	88.7040	821	1360	1	chr3A.!!$R1	539
12	TraesCS3B01G074200	chr5D	352404551	352405373	822	False	1153.0	1153	92.0000	1	822	1	chr5D.!!$F1	821
13	TraesCS3B01G074200	chr6D	6802278	6803101	823	True	1138.0	1138	91.6460	1	822	1	chr6D.!!$R1	821
14	TraesCS3B01G074200	chr4D	415967906	415968729	823	False	1138.0	1138	91.6460	1	822	1	chr4D.!!$F1	821
15	TraesCS3B01G074200	chr4D	415975277	415976100	823	False	1138.0	1138	91.6460	1	822	1	chr4D.!!$F2	821
16	TraesCS3B01G074200	chr1D	6149197	6150020	823	True	1138.0	1138	91.6460	1	822	1	chr1D.!!$R1	821
17	TraesCS3B01G074200	chr1D	489009473	489010296	823	False	1138.0	1138	91.6460	1	822	1	chr1D.!!$F1	821
18	TraesCS3B01G074200	chr1B	636679273	636680042	769	True	675.0	675	82.8280	1107	1883	1	chr1B.!!$R1	776
19	TraesCS3B01G074200	chr7D	628671627	628672189	562	False	272.0	438	89.7145	2140	2666	2	chr7D.!!$F1	526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
225	226	0.988832	TTCCATGAACCCGTAAGCCT	59.011	50.0	0.0	0.0	0.0	4.58	F
1257	1294	0.972883	ATCCTCTTCTATGCTCGGCC	59.027	55.0	0.0	0.0	0.0	6.13	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1347	1387	0.106819	GGTCCAAGCCTGATGCAGAT	60.107	55.0	0.00	0.00	44.83	2.90	R
2827	2942	0.034896	ACATGACCGTCCAAGGACAC	59.965	55.0	18.57	9.82	44.77	3.67	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	47	3.683365	ACCTCGTTACCGGTATTGTTT	57.317	42.857	16.67	0.00	33.95	2.83
47	48	3.328505	ACCTCGTTACCGGTATTGTTTG	58.671	45.455	16.67	5.63	33.95	2.93
70	71	1.454572	TTCTCGTTCCCGTGTTCCGA	61.455	55.000	0.00	0.00	39.56	4.55
134	135	2.292267	GGATACCGTAACACCGAGAGA	58.708	52.381	0.00	0.00	0.00	3.10
138	139	1.226323	CGTAACACCGAGAGAGCCG	60.226	63.158	0.00	0.00	0.00	5.52
147	148	2.568062	ACCGAGAGAGCCGAGAGATATA	59.432	50.000	0.00	0.00	0.00	0.86
225	226	0.988832	TTCCATGAACCCGTAAGCCT	59.011	50.000	0.00	0.00	0.00	4.58
256	257	2.420827	CCACCCATTTATGGCTGACGTA	60.421	50.000	3.11	0.00	46.70	3.57
269	270	2.676342	GCTGACGTATAACAAACCCCAG	59.324	50.000	0.00	0.00	0.00	4.45
274	275	5.245751	TGACGTATAACAAACCCCAGAGTTA	59.754	40.000	0.00	0.00	0.00	2.24
338	339	4.082787	AGGAATCATGCAAACGTTAACCAG	60.083	41.667	0.00	0.00	0.00	4.00
339	340	4.320935	GGAATCATGCAAACGTTAACCAGT	60.321	41.667	0.00	0.00	0.00	4.00
341	342	3.958704	TCATGCAAACGTTAACCAGTTG	58.041	40.909	0.00	3.42	0.00	3.16
434	437	8.299570	CACAAGTGTTCTTCTAAAATTATGCCT	58.700	33.333	0.00	0.00	0.00	4.75
443	446	8.739972	TCTTCTAAAATTATGCCTTCAAGGTTC	58.260	33.333	5.03	0.00	37.80	3.62
444	447	8.650143	TTCTAAAATTATGCCTTCAAGGTTCT	57.350	30.769	5.03	0.00	37.80	3.01
521	524	1.605232	GTCTTAGAGGCGAGACTAGGC	59.395	57.143	0.52	0.52	39.30	3.93
695	699	3.501385	GGGGCATATCTCCTACAGACTCT	60.501	52.174	0.00	0.00	32.26	3.24
704	708	3.435275	TCCTACAGACTCTCACTTGCAT	58.565	45.455	0.00	0.00	0.00	3.96
779	783	5.644206	TGGTGTAAAATATGCTTCGCTTGTA	59.356	36.000	0.00	0.00	0.00	2.41
825	829	2.210116	GACAACTTCAGCTCCGTTTCA	58.790	47.619	0.00	0.00	0.00	2.69
859	863	2.851071	CGACGAGGAGGAGGATGGC	61.851	68.421	0.00	0.00	0.00	4.40
864	868	2.367512	GGAGGAGGATGGCTGGGT	60.368	66.667	0.00	0.00	0.00	4.51
1027	1053	6.887376	TTCGCTTACTATGAAGTGTGATTC	57.113	37.500	0.00	0.00	38.00	2.52
1079	1108	7.699709	TTCTAGGTATGGATTTATGGACCAA	57.300	36.000	0.00	0.00	37.24	3.67
1084	1113	8.287904	AGGTATGGATTTATGGACCAAATCTA	57.712	34.615	15.43	11.53	40.62	1.98
1257	1294	0.972883	ATCCTCTTCTATGCTCGGCC	59.027	55.000	0.00	0.00	0.00	6.13
1347	1387	1.278985	CATGTTCCCTGCTGGACTACA	59.721	52.381	11.88	11.73	45.11	2.74
1377	1417	0.320697	GCTTGGACCTTGGTACGTCT	59.679	55.000	0.00	0.00	0.00	4.18
1378	1418	1.270678	GCTTGGACCTTGGTACGTCTT	60.271	52.381	0.00	0.00	0.00	3.01
1506	1546	2.048603	GTGACCAAGGCCAGCATCC	61.049	63.158	5.01	0.00	0.00	3.51
1634	1676	0.758734	TTGCTGCTGGGCGATATAGT	59.241	50.000	0.00	0.00	34.52	2.12
1665	1707	1.347050	AGGTGCTAGAGGCTGCATATG	59.653	52.381	0.50	0.00	41.45	1.78
1674	1716	1.561730	GCTGCATATGAGCACGTCG	59.438	57.895	6.97	0.00	40.11	5.12
1685	1727	1.734477	GCACGTCGCATCTGAGTGT	60.734	57.895	5.30	0.00	41.79	3.55
1697	1739	1.899814	TCTGAGTGTACCGATTTGGCT	59.100	47.619	0.00	0.00	43.94	4.75
1751	1796	3.451178	AGTTCTACATGATGGCCTACGTT	59.549	43.478	3.32	0.00	0.00	3.99
1754	1799	0.253044	ACATGATGGCCTACGTTGCT	59.747	50.000	3.32	0.00	0.00	3.91
1803	1851	1.212688	TCGGCTGACCAATGGATGAAT	59.787	47.619	6.16	0.00	34.57	2.57
1860	1908	2.210116	ACGCTGTCAAACCTGTAACAG	58.790	47.619	0.00	0.00	41.59	3.16
1911	1959	1.139256	TCAAGTCACCGTTGCTTGGTA	59.861	47.619	13.89	0.00	37.72	3.25
1916	1964	0.872388	CACCGTTGCTTGGTACCTTC	59.128	55.000	14.36	2.61	37.72	3.46
1920	1968	2.550208	CCGTTGCTTGGTACCTTCTTCT	60.550	50.000	14.36	0.00	0.00	2.85
1944	1992	8.773645	TCTTGTTGTTGTTGTGTGAATATAGAG	58.226	33.333	0.00	0.00	0.00	2.43
1967	2015	0.751277	CTGTGTTGGGCAGTGGTTGA	60.751	55.000	0.00	0.00	0.00	3.18
1980	2028	0.107643	TGGTTGATGGTTGCTCGACA	59.892	50.000	0.00	0.00	0.00	4.35
2026	2086	4.521639	ACATCTACGTGTTTAGTGGTCTCA	59.478	41.667	0.00	0.00	0.00	3.27
2073	2133	1.738099	GTACGTGAGGTGCAGGCTG	60.738	63.158	10.94	10.94	35.84	4.85
2142	2202	4.539509	ACGTGTTTTATTTGACGCTCAA	57.460	36.364	0.00	0.00	35.21	3.02
2200	2271	2.646719	CGTTCAAGACCGGACCGA	59.353	61.111	17.49	0.00	0.00	4.69
2249	2324	2.553172	CCGGTCCGGTTACAAAATTTCA	59.447	45.455	23.02	0.00	42.73	2.69
2256	2331	3.304794	CGGTTACAAAATTTCAGCCCGAA	60.305	43.478	9.39	0.00	35.04	4.30
2283	2358	0.966920	TCGGTCCAGTCCAGTCTTTC	59.033	55.000	0.00	0.00	0.00	2.62
2290	2365	1.616865	CAGTCCAGTCTTTCACCGGTA	59.383	52.381	6.87	0.00	0.00	4.02
2291	2366	1.893801	AGTCCAGTCTTTCACCGGTAG	59.106	52.381	6.87	0.30	0.00	3.18
2296	2371	0.971386	GTCTTTCACCGGTAGGACCA	59.029	55.000	6.87	0.00	38.47	4.02
2333	2408	0.950555	TGCAGGCTGTTCATCGTCAC	60.951	55.000	17.16	0.00	0.00	3.67
2451	2528	5.185828	CCCCTCCTGGATTTGTTTCTTTTAG	59.814	44.000	0.00	0.00	35.39	1.85
2468	2546	6.982852	TCTTTTAGTCAGTCGAACAGAGAAT	58.017	36.000	0.00	0.00	0.00	2.40
2474	2552	6.513180	AGTCAGTCGAACAGAGAATAAAACA	58.487	36.000	0.00	0.00	0.00	2.83
2515	2594	6.544650	TCAGGTAGAAGAGAACAGAAGTAGT	58.455	40.000	0.00	0.00	0.00	2.73
2524	2603	7.584122	AGAGAACAGAAGTAGTAAGAACACA	57.416	36.000	0.00	0.00	0.00	3.72
2562	2641	1.376037	CGAGAGGAACAGGGGCAAC	60.376	63.158	0.00	0.00	0.00	4.17
2579	2660	2.107041	AACAGACGATCACGCCCCAA	62.107	55.000	0.00	0.00	43.96	4.12
2681	2796	5.863935	CCTTTTATTCAACTAGCAAAGTGGC	59.136	40.000	0.00	0.00	38.88	5.01
2690	2805	2.699768	GCAAAGTGGCCTGCGCATA	61.700	57.895	12.24	0.00	36.38	3.14
2700	2815	2.813179	CTGCGCATACTCGTTGGCC	61.813	63.158	12.24	0.00	0.00	5.36
2702	2817	2.180204	GCGCATACTCGTTGGCCAT	61.180	57.895	6.09	0.00	0.00	4.40
2818	2933	2.112475	CGTTTGCGTCCAACAAATCA	57.888	45.000	0.00	0.00	39.09	2.57
2827	2942	0.443869	CCAACAAATCAGGAGCGACG	59.556	55.000	0.00	0.00	0.00	5.12
2831	2946	0.716108	CAAATCAGGAGCGACGTGTC	59.284	55.000	0.00	0.00	36.04	3.67
2832	2947	0.389948	AAATCAGGAGCGACGTGTCC	60.390	55.000	9.65	9.65	36.04	4.02
2840	2955	2.430244	CGACGTGTCCTTGGACGG	60.430	66.667	14.24	11.13	39.94	4.79
2851	2966	2.076863	CCTTGGACGGTCATGTTTCTC	58.923	52.381	10.76	0.00	0.00	2.87

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
166	167	5.296151	TGATAGCTCGAGATTGGGATTTT	57.704	39.130	18.75	0.00	0.00	1.82
199	200	5.818857	GCTTACGGGTTCATGGAAAAGTATA	59.181	40.000	0.00	0.00	0.00	1.47
225	226	4.505918	CCATAAATGGGTGGCTATTACGGA	60.506	45.833	0.67	0.00	44.31	4.69
249	250	4.181578	CTCTGGGGTTTGTTATACGTCAG	58.818	47.826	0.00	0.00	0.00	3.51
256	257	6.152831	GCTTCATTAACTCTGGGGTTTGTTAT	59.847	38.462	0.00	0.00	0.00	1.89
269	270	6.187125	TCTTCATGCTTGCTTCATTAACTC	57.813	37.500	0.00	0.00	0.00	3.01
274	275	5.464030	AGTTTCTTCATGCTTGCTTCATT	57.536	34.783	0.00	0.00	0.00	2.57
420	423	7.065803	CGAGAACCTTGAAGGCATAATTTTAGA	59.934	37.037	11.96	0.00	39.63	2.10
425	428	3.947834	CCGAGAACCTTGAAGGCATAATT	59.052	43.478	11.96	0.00	39.63	1.40
434	437	2.565391	TGACTATGCCGAGAACCTTGAA	59.435	45.455	0.00	0.00	0.00	2.69
521	524	9.120422	GTGGAAAAGTAAACGGTAAAATGTATG	57.880	33.333	0.00	0.00	0.00	2.39
673	677	2.829120	GAGTCTGTAGGAGATATGCCCC	59.171	54.545	0.00	0.00	31.63	5.80
695	699	9.755804	CTAGATTATTGACTCTAATGCAAGTGA	57.244	33.333	0.00	0.00	0.00	3.41
738	742	4.623932	CACCAGTATGCCATAGGTGTAT	57.376	45.455	12.70	0.00	43.57	2.29
779	783	4.028131	TCCGTTGGACATCAGGTTATACT	58.972	43.478	0.00	0.00	0.00	2.12
785	789	1.208052	CAGATCCGTTGGACATCAGGT	59.792	52.381	0.00	0.00	32.98	4.00
847	851	2.003548	AACCCAGCCATCCTCCTCC	61.004	63.158	0.00	0.00	0.00	4.30
859	863	3.958147	ATGACGAGCCGCAACCCAG	62.958	63.158	0.00	0.00	0.00	4.45
864	868	1.573829	GAAACCATGACGAGCCGCAA	61.574	55.000	0.00	0.00	0.00	4.85
1079	1108	9.177608	TCAGGTTCGATCAAATCATTTTAGATT	57.822	29.630	0.00	0.00	39.81	2.40
1084	1113	6.377996	TCCATCAGGTTCGATCAAATCATTTT	59.622	34.615	0.00	0.00	35.89	1.82
1124	1153	4.112634	CGGCGGGTGTATCATATCATAAG	58.887	47.826	0.00	0.00	0.00	1.73
1228	1265	0.904865	AGAAGAGGATGTGCCCACGA	60.905	55.000	0.00	0.00	37.37	4.35
1257	1294	2.161486	CGAGGAGAAGGAAAGCGCG	61.161	63.158	0.00	0.00	0.00	6.86
1336	1376	1.832998	TGATGCAGATGTAGTCCAGCA	59.167	47.619	0.00	0.00	40.98	4.41
1347	1387	0.106819	GGTCCAAGCCTGATGCAGAT	60.107	55.000	0.00	0.00	44.83	2.90
1491	1531	2.357836	CTGGATGCTGGCCTTGGT	59.642	61.111	3.32	0.00	0.00	3.67
1665	1707	1.153939	ACTCAGATGCGACGTGCTC	60.154	57.895	0.00	0.00	46.63	4.26
1674	1716	2.609459	CCAAATCGGTACACTCAGATGC	59.391	50.000	0.00	0.00	0.00	3.91
1685	1727	0.679640	CCTTGCCAGCCAAATCGGTA	60.680	55.000	0.00	0.00	36.97	4.02
1697	1739	2.203480	GGAAGTGCCACCTTGCCA	60.203	61.111	0.00	0.00	36.34	4.92
1751	1796	1.940883	ATTCGACGACGGCCTTAGCA	61.941	55.000	7.55	0.00	42.56	3.49
1754	1799	1.140161	CCATTCGACGACGGCCTTA	59.860	57.895	7.55	0.00	40.21	2.69
1803	1851	1.269703	GGAGGGGAAGAGCGGGTTAA	61.270	60.000	0.00	0.00	0.00	2.01
1851	1899	3.065786	CACCATTGCATAGCTGTTACAGG	59.934	47.826	14.63	0.00	31.21	4.00
1860	1908	4.362279	CCACAAATACACCATTGCATAGC	58.638	43.478	0.00	0.00	0.00	2.97
1911	1959	4.522789	ACACAACAACAACAAGAAGAAGGT	59.477	37.500	0.00	0.00	0.00	3.50
1916	1964	9.385902	CTATATTCACACAACAACAACAAGAAG	57.614	33.333	0.00	0.00	0.00	2.85
1920	1968	8.669946	TCTCTATATTCACACAACAACAACAA	57.330	30.769	0.00	0.00	0.00	2.83
1944	1992	0.886490	CCACTGCCCAACACAGTCTC	60.886	60.000	0.00	0.00	45.06	3.36
1967	2015	0.670546	CGTTCCTGTCGAGCAACCAT	60.671	55.000	0.00	0.00	0.00	3.55
1980	2028	1.597797	TATTGCGGTCGGTCGTTCCT	61.598	55.000	0.00	0.00	0.00	3.36
2026	2086	2.665185	GTCGGTCGTGGCTTGCTT	60.665	61.111	0.00	0.00	0.00	3.91
2065	2125	1.227999	GCAGTCGTAAACAGCCTGCA	61.228	55.000	5.16	0.00	45.94	4.41
2142	2202	4.749310	CGCTTGCTCCGTCCAGCT	62.749	66.667	0.00	0.00	40.39	4.24
2200	2271	4.021925	GAGCTGGCCAGGACCGTT	62.022	66.667	33.46	6.42	0.00	4.44
2256	2331	3.326880	ACTGGACTGGACCGAGTAAATTT	59.673	43.478	0.00	0.00	0.00	1.82
2283	2358	2.125673	CGCTTGGTCCTACCGGTG	60.126	66.667	19.93	7.24	42.58	4.94
2290	2365	2.920912	TTCGGTCCGCTTGGTCCT	60.921	61.111	6.34	0.00	38.66	3.85
2291	2366	2.434359	CTTCGGTCCGCTTGGTCC	60.434	66.667	6.34	0.00	37.58	4.46
2398	2474	1.677966	CGGGAGAAGGACGTCAGGA	60.678	63.158	18.91	0.00	0.00	3.86
2435	2511	7.186021	TCGACTGACTAAAAGAAACAAATCC	57.814	36.000	0.00	0.00	0.00	3.01
2451	2528	6.200286	TGTGTTTTATTCTCTGTTCGACTGAC	59.800	38.462	0.00	0.00	0.00	3.51
2468	2546	3.561725	TGATGCACGTGACATGTGTTTTA	59.438	39.130	24.91	12.28	37.43	1.52
2474	2552	2.004733	CTGATGATGCACGTGACATGT	58.995	47.619	22.23	12.34	0.00	3.21
2515	2594	2.482316	CGGGTGTGACAGTGTGTTCTTA	60.482	50.000	0.00	0.00	0.00	2.10
2562	2641	0.744414	AATTGGGGCGTGATCGTCTG	60.744	55.000	0.00	0.00	41.76	3.51
2579	2660	8.879227	TGGATCATTAAAAGGAAAACAAGGAAT	58.121	29.630	0.00	0.00	0.00	3.01
2613	2728	2.549349	GGGAAGGCGCCTTAATTATCGA	60.549	50.000	40.30	0.00	36.26	3.59
2681	2796	2.813179	GCCAACGAGTATGCGCAGG	61.813	63.158	18.32	10.19	33.86	4.85
2690	2805	0.981183	TTAGGTCATGGCCAACGAGT	59.019	50.000	20.74	0.00	0.00	4.18
2818	2933	2.651361	CAAGGACACGTCGCTCCT	59.349	61.111	6.29	6.29	38.67	3.69
2827	2942	0.034896	ACATGACCGTCCAAGGACAC	59.965	55.000	18.57	9.82	44.77	3.67
2831	2946	2.076863	GAGAAACATGACCGTCCAAGG	58.923	52.381	0.00	0.00	37.30	3.61
2832	2947	1.726791	CGAGAAACATGACCGTCCAAG	59.273	52.381	0.00	0.00	0.00	3.61
2840	2955	1.798813	GACCCACACGAGAAACATGAC	59.201	52.381	0.00	0.00	0.00	3.06
2851	2966	4.619227	ACAAGCCGGACCCACACG	62.619	66.667	5.05	0.00	0.00	4.49
2902	3017	4.323417	TGAGCATGAATACAACGGAACTT	58.677	39.130	0.00	0.00	0.00	2.66

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.