Multiple sequence alignment - TraesCS3B01G074000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G074000 chr3B 100.000 5251 0 0 1 5251 44788493 44783243 0.000000e+00 9697
1 TraesCS3B01G074000 chr3B 95.414 1003 41 2 1563 2563 44761039 44762038 0.000000e+00 1592
2 TraesCS3B01G074000 chr3B 84.225 374 56 3 4879 5251 764376034 764376405 1.390000e-95 361
3 TraesCS3B01G074000 chr3B 89.606 279 29 0 4153 4431 44765811 44766089 6.470000e-94 355
4 TraesCS3B01G074000 chr3B 88.031 259 25 4 4880 5138 44767111 44767363 8.550000e-78 302
5 TraesCS3B01G074000 chr3B 85.921 277 35 4 4605 4878 764375432 764375707 5.140000e-75 292
6 TraesCS3B01G074000 chr3D 95.396 3866 146 13 597 4440 26587465 26583610 0.000000e+00 6124
7 TraesCS3B01G074000 chr3D 95.588 816 32 2 4437 5251 26583122 26582310 0.000000e+00 1304
8 TraesCS3B01G074000 chr3D 86.012 336 38 7 4919 5251 26573566 26573895 8.370000e-93 351
9 TraesCS3B01G074000 chr3A 93.816 3994 182 20 468 4440 36663093 36659144 0.000000e+00 5947
10 TraesCS3B01G074000 chr3A 89.333 375 37 3 4879 5251 36658120 36657747 7.960000e-128 468
11 TraesCS3B01G074000 chr3A 86.282 277 34 4 4605 4878 709375783 709375508 1.110000e-76 298
12 TraesCS3B01G074000 chr5D 83.829 3197 476 28 993 4176 369018867 369022035 0.000000e+00 3001
13 TraesCS3B01G074000 chr5D 97.087 103 2 1 374 476 399581776 399581675 6.990000e-39 172
14 TraesCS3B01G074000 chr5D 97.087 103 2 1 374 476 461304334 461304435 6.990000e-39 172
15 TraesCS3B01G074000 chr5D 97.087 103 2 1 374 476 519979429 519979530 6.990000e-39 172
16 TraesCS3B01G074000 chr5B 84.068 3107 473 18 1077 4176 35548886 35545795 0.000000e+00 2976
17 TraesCS3B01G074000 chr6B 83.600 3189 497 25 1007 4182 64689674 64686499 0.000000e+00 2968
18 TraesCS3B01G074000 chr6B 82.543 3185 533 21 1004 4176 65090841 65087668 0.000000e+00 2780
19 TraesCS3B01G074000 chr6B 82.152 3160 536 21 1021 4170 2716390 2719531 0.000000e+00 2686
20 TraesCS3B01G074000 chr2B 83.675 3173 484 30 1021 4176 734396010 734399165 0.000000e+00 2959
21 TraesCS3B01G074000 chrUn 83.216 3122 483 24 1072 4176 101627227 101630324 0.000000e+00 2824
22 TraesCS3B01G074000 chrUn 83.424 2751 422 21 1448 4176 94836791 94839529 0.000000e+00 2523
23 TraesCS3B01G074000 chr4A 82.828 3168 520 21 1021 4176 657201004 657204159 0.000000e+00 2815
24 TraesCS3B01G074000 chr7D 81.769 3165 548 22 1021 4176 9182434 9185578 0.000000e+00 2621
25 TraesCS3B01G074000 chr6A 98.058 103 1 1 374 476 541691649 541691548 1.500000e-40 178
26 TraesCS3B01G074000 chr1D 98.039 102 1 1 374 475 414643255 414643355 5.400000e-40 176
27 TraesCS3B01G074000 chr6D 97.087 103 3 0 374 476 262665062 262665164 1.940000e-39 174
28 TraesCS3B01G074000 chr6D 97.087 103 2 1 374 476 128989360 128989259 6.990000e-39 172
29 TraesCS3B01G074000 chr4D 97.087 103 2 1 374 476 29093462 29093361 6.990000e-39 172
30 TraesCS3B01G074000 chr4D 97.087 103 2 1 374 476 333227504 333227605 6.990000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G074000 chr3B 44783243 44788493 5250 True 9697.000000 9697 100.0000 1 5251 1 chr3B.!!$R1 5250
1 TraesCS3B01G074000 chr3B 44761039 44767363 6324 False 749.666667 1592 91.0170 1563 5138 3 chr3B.!!$F1 3575
2 TraesCS3B01G074000 chr3B 764375432 764376405 973 False 326.500000 361 85.0730 4605 5251 2 chr3B.!!$F2 646
3 TraesCS3B01G074000 chr3D 26582310 26587465 5155 True 3714.000000 6124 95.4920 597 5251 2 chr3D.!!$R1 4654
4 TraesCS3B01G074000 chr3A 36657747 36663093 5346 True 3207.500000 5947 91.5745 468 5251 2 chr3A.!!$R2 4783
5 TraesCS3B01G074000 chr5D 369018867 369022035 3168 False 3001.000000 3001 83.8290 993 4176 1 chr5D.!!$F1 3183
6 TraesCS3B01G074000 chr5B 35545795 35548886 3091 True 2976.000000 2976 84.0680 1077 4176 1 chr5B.!!$R1 3099
7 TraesCS3B01G074000 chr6B 64686499 64689674 3175 True 2968.000000 2968 83.6000 1007 4182 1 chr6B.!!$R1 3175
8 TraesCS3B01G074000 chr6B 65087668 65090841 3173 True 2780.000000 2780 82.5430 1004 4176 1 chr6B.!!$R2 3172
9 TraesCS3B01G074000 chr6B 2716390 2719531 3141 False 2686.000000 2686 82.1520 1021 4170 1 chr6B.!!$F1 3149
10 TraesCS3B01G074000 chr2B 734396010 734399165 3155 False 2959.000000 2959 83.6750 1021 4176 1 chr2B.!!$F1 3155
11 TraesCS3B01G074000 chrUn 101627227 101630324 3097 False 2824.000000 2824 83.2160 1072 4176 1 chrUn.!!$F2 3104
12 TraesCS3B01G074000 chrUn 94836791 94839529 2738 False 2523.000000 2523 83.4240 1448 4176 1 chrUn.!!$F1 2728
13 TraesCS3B01G074000 chr4A 657201004 657204159 3155 False 2815.000000 2815 82.8280 1021 4176 1 chr4A.!!$F1 3155
14 TraesCS3B01G074000 chr7D 9182434 9185578 3144 False 2621.000000 2621 81.7690 1021 4176 1 chr7D.!!$F1 3155

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.032952 TCCGACAGTTTCCAGGAACG 59.967 55.000 0.00 1.5 34.74 3.95 F
361 362 0.033228 CGGAAGCCAGCCAGAGATAG 59.967 60.000 0.00 0.0 0.00 2.08 F
745 764 0.179137 GTCGTGGTCATCGCTGATCA 60.179 55.000 0.00 0.0 40.24 2.92 F
755 774 0.457681 TCGCTGATCAATTCGACGCA 60.458 50.000 9.44 0.0 0.00 5.24 F
1384 1422 0.603569 GAGCGACAACTCCTTCTCCA 59.396 55.000 0.00 0.0 0.00 3.86 F
2966 3026 1.063492 TCATTTGGCTCCATGCTCCAT 60.063 47.619 0.00 0.0 42.39 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 1385 0.889638 TCAAGTCGAGTCTCCGCAGT 60.890 55.000 0.0 0.0 0.00 4.40 R
1494 1532 2.088423 CTCAGCGAGACTACTTCCAGT 58.912 52.381 0.0 0.0 0.00 4.00 R
2115 2162 2.761208 ACTCCCAAAGATCCTAGTGTCG 59.239 50.000 0.0 0.0 0.00 4.35 R
2500 2552 4.022849 GCTACCAACATCATTAGGAATGGC 60.023 45.833 0.0 0.0 39.38 4.40 R
3345 3408 1.774639 TCTTAACGAGACAACGGTGC 58.225 50.000 0.0 0.0 37.61 5.01 R
4569 8087 0.822164 ATTCAGGGCATTTGAGCAGC 59.178 50.000 0.0 0.0 35.83 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.876612 AGCAGAACAGCTTAAATCTTCAG 57.123 39.130 0.00 0.00 43.70 3.02
25 26 5.312079 AGCAGAACAGCTTAAATCTTCAGT 58.688 37.500 0.00 0.00 43.70 3.41
26 27 6.467677 AGCAGAACAGCTTAAATCTTCAGTA 58.532 36.000 0.00 0.00 43.70 2.74
27 28 6.936900 AGCAGAACAGCTTAAATCTTCAGTAA 59.063 34.615 0.00 0.00 43.70 2.24
28 29 7.445402 AGCAGAACAGCTTAAATCTTCAGTAAA 59.555 33.333 0.00 0.00 43.70 2.01
29 30 8.076178 GCAGAACAGCTTAAATCTTCAGTAAAA 58.924 33.333 0.00 0.00 0.00 1.52
30 31 9.950680 CAGAACAGCTTAAATCTTCAGTAAAAA 57.049 29.630 0.00 0.00 0.00 1.94
52 53 9.947433 AAAAAGAAATCATGAATTAGGAATGCA 57.053 25.926 0.00 0.00 0.00 3.96
54 55 9.760077 AAAGAAATCATGAATTAGGAATGCATC 57.240 29.630 0.00 0.00 34.84 3.91
55 56 8.473358 AGAAATCATGAATTAGGAATGCATCA 57.527 30.769 0.00 0.00 34.84 3.07
56 57 8.577296 AGAAATCATGAATTAGGAATGCATCAG 58.423 33.333 0.00 0.00 34.84 2.90
57 58 5.700722 TCATGAATTAGGAATGCATCAGC 57.299 39.130 0.00 0.00 34.84 4.26
67 68 2.512515 GCATCAGCACCGGTCTCC 60.513 66.667 2.59 0.00 41.58 3.71
79 80 3.516578 GGTCTCCGACAGTTTCCAG 57.483 57.895 0.00 0.00 33.68 3.86
80 81 0.037232 GGTCTCCGACAGTTTCCAGG 60.037 60.000 0.00 0.00 33.68 4.45
81 82 0.966920 GTCTCCGACAGTTTCCAGGA 59.033 55.000 0.00 0.00 32.09 3.86
82 83 1.343465 GTCTCCGACAGTTTCCAGGAA 59.657 52.381 0.00 0.00 32.09 3.36
83 84 1.343465 TCTCCGACAGTTTCCAGGAAC 59.657 52.381 0.00 0.00 0.00 3.62
84 85 0.032952 TCCGACAGTTTCCAGGAACG 59.967 55.000 0.00 1.50 34.74 3.95
85 86 1.566018 CCGACAGTTTCCAGGAACGC 61.566 60.000 0.00 0.00 34.74 4.84
86 87 1.566018 CGACAGTTTCCAGGAACGCC 61.566 60.000 0.00 0.00 34.74 5.68
88 89 1.001633 GACAGTTTCCAGGAACGCCTA 59.998 52.381 0.00 0.00 44.80 3.93
89 90 1.002087 ACAGTTTCCAGGAACGCCTAG 59.998 52.381 0.00 0.00 44.80 3.02
90 91 1.002087 CAGTTTCCAGGAACGCCTAGT 59.998 52.381 0.00 0.00 44.80 2.57
91 92 1.697982 AGTTTCCAGGAACGCCTAGTT 59.302 47.619 0.00 0.00 44.80 2.24
92 93 1.804748 GTTTCCAGGAACGCCTAGTTG 59.195 52.381 0.00 0.00 44.80 3.16
93 94 1.344065 TTCCAGGAACGCCTAGTTGA 58.656 50.000 0.00 0.00 44.80 3.18
94 95 1.568504 TCCAGGAACGCCTAGTTGAT 58.431 50.000 0.00 0.00 44.80 2.57
95 96 1.480954 TCCAGGAACGCCTAGTTGATC 59.519 52.381 0.00 0.00 44.80 2.92
96 97 1.560923 CAGGAACGCCTAGTTGATCG 58.439 55.000 0.00 0.00 44.80 3.69
97 98 0.460311 AGGAACGCCTAGTTGATCGG 59.540 55.000 0.00 0.00 44.74 4.18
98 99 0.458669 GGAACGCCTAGTTGATCGGA 59.541 55.000 0.00 0.00 44.35 4.55
99 100 1.068741 GGAACGCCTAGTTGATCGGAT 59.931 52.381 0.00 0.00 44.35 4.18
100 101 2.395654 GAACGCCTAGTTGATCGGATC 58.604 52.381 11.07 11.07 44.35 3.36
101 102 1.399714 ACGCCTAGTTGATCGGATCA 58.600 50.000 16.44 16.44 37.55 2.92
102 103 1.338337 ACGCCTAGTTGATCGGATCAG 59.662 52.381 19.15 9.73 40.94 2.90
103 104 1.609072 CGCCTAGTTGATCGGATCAGA 59.391 52.381 19.15 9.19 40.94 3.27
104 105 2.230025 CGCCTAGTTGATCGGATCAGAT 59.770 50.000 19.15 8.17 40.94 2.90
105 106 3.305676 CGCCTAGTTGATCGGATCAGATT 60.306 47.826 19.15 11.93 40.94 2.40
106 107 3.993081 GCCTAGTTGATCGGATCAGATTG 59.007 47.826 19.15 12.76 40.94 2.67
107 108 4.262207 GCCTAGTTGATCGGATCAGATTGA 60.262 45.833 19.15 3.21 40.94 2.57
108 109 5.226396 CCTAGTTGATCGGATCAGATTGAC 58.774 45.833 19.15 14.41 40.94 3.18
109 110 4.743057 AGTTGATCGGATCAGATTGACA 57.257 40.909 19.15 1.08 40.94 3.58
110 111 5.089970 AGTTGATCGGATCAGATTGACAA 57.910 39.130 19.15 7.01 40.94 3.18
111 112 4.872691 AGTTGATCGGATCAGATTGACAAC 59.127 41.667 21.06 21.06 40.94 3.32
112 113 4.470334 TGATCGGATCAGATTGACAACA 57.530 40.909 16.44 0.00 33.59 3.33
113 114 4.183865 TGATCGGATCAGATTGACAACAC 58.816 43.478 16.44 0.00 33.59 3.32
114 115 3.961480 TCGGATCAGATTGACAACACT 57.039 42.857 0.00 0.00 0.00 3.55
115 116 5.127031 TGATCGGATCAGATTGACAACACTA 59.873 40.000 16.44 0.00 33.59 2.74
116 117 5.400066 TCGGATCAGATTGACAACACTAA 57.600 39.130 0.00 0.00 0.00 2.24
117 118 5.789521 TCGGATCAGATTGACAACACTAAA 58.210 37.500 0.00 0.00 0.00 1.85
118 119 6.227522 TCGGATCAGATTGACAACACTAAAA 58.772 36.000 0.00 0.00 0.00 1.52
119 120 6.708502 TCGGATCAGATTGACAACACTAAAAA 59.291 34.615 0.00 0.00 0.00 1.94
120 121 7.390440 TCGGATCAGATTGACAACACTAAAAAT 59.610 33.333 0.00 0.00 0.00 1.82
121 122 8.664798 CGGATCAGATTGACAACACTAAAAATA 58.335 33.333 0.00 0.00 0.00 1.40
130 131 9.666626 TTGACAACACTAAAAATATAAACACCG 57.333 29.630 0.00 0.00 0.00 4.94
131 132 9.053840 TGACAACACTAAAAATATAAACACCGA 57.946 29.630 0.00 0.00 0.00 4.69
132 133 9.321590 GACAACACTAAAAATATAAACACCGAC 57.678 33.333 0.00 0.00 0.00 4.79
133 134 8.838365 ACAACACTAAAAATATAAACACCGACA 58.162 29.630 0.00 0.00 0.00 4.35
134 135 9.325150 CAACACTAAAAATATAAACACCGACAG 57.675 33.333 0.00 0.00 0.00 3.51
135 136 7.524065 ACACTAAAAATATAAACACCGACAGC 58.476 34.615 0.00 0.00 0.00 4.40
136 137 7.173562 ACACTAAAAATATAAACACCGACAGCA 59.826 33.333 0.00 0.00 0.00 4.41
137 138 7.480542 CACTAAAAATATAAACACCGACAGCAC 59.519 37.037 0.00 0.00 0.00 4.40
138 139 4.957759 AAATATAAACACCGACAGCACC 57.042 40.909 0.00 0.00 0.00 5.01
139 140 3.906720 ATATAAACACCGACAGCACCT 57.093 42.857 0.00 0.00 0.00 4.00
140 141 2.561478 ATAAACACCGACAGCACCTT 57.439 45.000 0.00 0.00 0.00 3.50
141 142 1.588674 TAAACACCGACAGCACCTTG 58.411 50.000 0.00 0.00 0.00 3.61
142 143 1.101049 AAACACCGACAGCACCTTGG 61.101 55.000 0.00 0.00 0.00 3.61
143 144 2.111043 CACCGACAGCACCTTGGT 59.889 61.111 0.00 0.00 0.00 3.67
144 145 1.369692 CACCGACAGCACCTTGGTA 59.630 57.895 0.00 0.00 0.00 3.25
145 146 0.670546 CACCGACAGCACCTTGGTAG 60.671 60.000 0.00 0.00 0.00 3.18
146 147 1.741770 CCGACAGCACCTTGGTAGC 60.742 63.158 0.00 0.00 0.00 3.58
147 148 1.005037 CGACAGCACCTTGGTAGCA 60.005 57.895 13.60 0.00 0.00 3.49
148 149 1.016130 CGACAGCACCTTGGTAGCAG 61.016 60.000 13.60 9.59 0.00 4.24
149 150 1.301677 GACAGCACCTTGGTAGCAGC 61.302 60.000 13.60 0.00 0.00 5.25
150 151 1.302752 CAGCACCTTGGTAGCAGCA 60.303 57.895 13.60 0.00 0.00 4.41
151 152 1.002868 AGCACCTTGGTAGCAGCAG 60.003 57.895 13.60 0.00 0.00 4.24
152 153 2.042831 GCACCTTGGTAGCAGCAGG 61.043 63.158 10.49 10.49 0.00 4.85
153 154 1.679311 CACCTTGGTAGCAGCAGGA 59.321 57.895 17.56 0.00 0.00 3.86
154 155 0.392193 CACCTTGGTAGCAGCAGGAG 60.392 60.000 17.56 7.53 0.00 3.69
155 156 0.838122 ACCTTGGTAGCAGCAGGAGT 60.838 55.000 17.56 0.00 0.00 3.85
156 157 0.326264 CCTTGGTAGCAGCAGGAGTT 59.674 55.000 6.80 0.00 0.00 3.01
157 158 1.271597 CCTTGGTAGCAGCAGGAGTTT 60.272 52.381 6.80 0.00 0.00 2.66
158 159 1.808945 CTTGGTAGCAGCAGGAGTTTG 59.191 52.381 0.00 0.00 0.00 2.93
159 160 1.055849 TGGTAGCAGCAGGAGTTTGA 58.944 50.000 0.00 0.00 0.00 2.69
160 161 1.419762 TGGTAGCAGCAGGAGTTTGAA 59.580 47.619 0.00 0.00 0.00 2.69
161 162 2.040278 TGGTAGCAGCAGGAGTTTGAAT 59.960 45.455 0.00 0.00 0.00 2.57
162 163 3.084786 GGTAGCAGCAGGAGTTTGAATT 58.915 45.455 0.00 0.00 0.00 2.17
163 164 3.119708 GGTAGCAGCAGGAGTTTGAATTG 60.120 47.826 0.00 0.00 0.00 2.32
164 165 2.867624 AGCAGCAGGAGTTTGAATTGA 58.132 42.857 0.00 0.00 0.00 2.57
165 166 2.818432 AGCAGCAGGAGTTTGAATTGAG 59.182 45.455 0.00 0.00 0.00 3.02
166 167 2.670509 GCAGCAGGAGTTTGAATTGAGC 60.671 50.000 0.00 0.00 0.00 4.26
167 168 2.094854 CAGCAGGAGTTTGAATTGAGCC 60.095 50.000 0.00 0.00 0.00 4.70
168 169 2.165998 GCAGGAGTTTGAATTGAGCCT 58.834 47.619 0.00 0.00 0.00 4.58
169 170 2.163211 GCAGGAGTTTGAATTGAGCCTC 59.837 50.000 0.00 0.00 0.00 4.70
170 171 3.415212 CAGGAGTTTGAATTGAGCCTCA 58.585 45.455 0.00 0.00 0.00 3.86
171 172 3.190118 CAGGAGTTTGAATTGAGCCTCAC 59.810 47.826 0.00 0.00 0.00 3.51
172 173 3.149196 GGAGTTTGAATTGAGCCTCACA 58.851 45.455 0.00 0.00 0.00 3.58
173 174 3.190118 GGAGTTTGAATTGAGCCTCACAG 59.810 47.826 0.00 0.00 0.00 3.66
174 175 3.152341 AGTTTGAATTGAGCCTCACAGG 58.848 45.455 0.00 0.00 38.80 4.00
175 176 2.205022 TTGAATTGAGCCTCACAGGG 57.795 50.000 0.00 0.00 35.37 4.45
181 182 3.986054 AGCCTCACAGGGTCAACA 58.014 55.556 0.00 0.00 43.92 3.33
182 183 2.230664 AGCCTCACAGGGTCAACAA 58.769 52.632 0.00 0.00 43.92 2.83
183 184 0.550914 AGCCTCACAGGGTCAACAAA 59.449 50.000 0.00 0.00 43.92 2.83
184 185 1.064017 AGCCTCACAGGGTCAACAAAA 60.064 47.619 0.00 0.00 43.92 2.44
185 186 1.338020 GCCTCACAGGGTCAACAAAAG 59.662 52.381 0.00 0.00 35.37 2.27
186 187 2.930950 CCTCACAGGGTCAACAAAAGA 58.069 47.619 0.00 0.00 0.00 2.52
187 188 3.287222 CCTCACAGGGTCAACAAAAGAA 58.713 45.455 0.00 0.00 0.00 2.52
188 189 3.316308 CCTCACAGGGTCAACAAAAGAAG 59.684 47.826 0.00 0.00 0.00 2.85
189 190 2.687935 TCACAGGGTCAACAAAAGAAGC 59.312 45.455 0.00 0.00 0.00 3.86
190 191 2.689983 CACAGGGTCAACAAAAGAAGCT 59.310 45.455 0.00 0.00 0.00 3.74
191 192 2.689983 ACAGGGTCAACAAAAGAAGCTG 59.310 45.455 0.00 0.00 0.00 4.24
192 193 2.035066 CAGGGTCAACAAAAGAAGCTGG 59.965 50.000 0.00 0.00 0.00 4.85
193 194 2.091885 AGGGTCAACAAAAGAAGCTGGA 60.092 45.455 0.00 0.00 0.00 3.86
194 195 2.893489 GGGTCAACAAAAGAAGCTGGAT 59.107 45.455 0.00 0.00 0.00 3.41
195 196 3.321968 GGGTCAACAAAAGAAGCTGGATT 59.678 43.478 0.00 0.00 0.00 3.01
196 197 4.301628 GGTCAACAAAAGAAGCTGGATTG 58.698 43.478 0.00 0.00 0.00 2.67
197 198 3.737774 GTCAACAAAAGAAGCTGGATTGC 59.262 43.478 0.00 0.00 0.00 3.56
198 199 3.384146 TCAACAAAAGAAGCTGGATTGCA 59.616 39.130 0.00 0.00 34.99 4.08
199 200 3.375782 ACAAAAGAAGCTGGATTGCAC 57.624 42.857 0.00 0.00 34.99 4.57
200 201 2.961062 ACAAAAGAAGCTGGATTGCACT 59.039 40.909 0.00 0.00 34.99 4.40
201 202 3.243636 ACAAAAGAAGCTGGATTGCACTG 60.244 43.478 0.00 0.00 34.99 3.66
202 203 0.886563 AAGAAGCTGGATTGCACTGC 59.113 50.000 0.00 0.00 34.99 4.40
203 204 0.251033 AGAAGCTGGATTGCACTGCA 60.251 50.000 0.00 0.00 36.47 4.41
204 205 0.170561 GAAGCTGGATTGCACTGCAG 59.829 55.000 19.33 19.33 40.61 4.41
205 206 0.251033 AAGCTGGATTGCACTGCAGA 60.251 50.000 26.22 0.00 40.61 4.26
206 207 0.677098 AGCTGGATTGCACTGCAGAG 60.677 55.000 26.22 14.77 40.61 3.35
207 208 0.675837 GCTGGATTGCACTGCAGAGA 60.676 55.000 26.22 3.00 40.61 3.10
208 209 2.017623 GCTGGATTGCACTGCAGAGAT 61.018 52.381 26.22 8.11 40.61 2.75
209 210 2.744166 GCTGGATTGCACTGCAGAGATA 60.744 50.000 26.22 4.31 40.61 1.98
210 211 3.741249 CTGGATTGCACTGCAGAGATAT 58.259 45.455 23.35 9.37 40.61 1.63
211 212 4.135306 CTGGATTGCACTGCAGAGATATT 58.865 43.478 23.35 1.97 40.61 1.28
212 213 5.294734 TGGATTGCACTGCAGAGATATTA 57.705 39.130 23.35 0.00 40.61 0.98
213 214 5.872963 TGGATTGCACTGCAGAGATATTAT 58.127 37.500 23.35 4.01 40.61 1.28
214 215 7.008021 TGGATTGCACTGCAGAGATATTATA 57.992 36.000 23.35 0.00 40.61 0.98
215 216 7.627311 TGGATTGCACTGCAGAGATATTATAT 58.373 34.615 23.35 0.85 40.61 0.86
216 217 7.767659 TGGATTGCACTGCAGAGATATTATATC 59.232 37.037 23.35 4.15 40.61 1.63
217 218 7.767659 GGATTGCACTGCAGAGATATTATATCA 59.232 37.037 23.35 0.00 40.61 2.15
218 219 8.719560 ATTGCACTGCAGAGATATTATATCAG 57.280 34.615 23.35 5.83 40.61 2.90
219 220 6.104665 TGCACTGCAGAGATATTATATCAGC 58.895 40.000 23.35 13.66 34.19 4.26
220 221 6.104665 GCACTGCAGAGATATTATATCAGCA 58.895 40.000 23.35 14.96 40.03 4.41
221 222 6.592994 GCACTGCAGAGATATTATATCAGCAA 59.407 38.462 23.35 4.63 41.37 3.91
222 223 7.201539 GCACTGCAGAGATATTATATCAGCAAG 60.202 40.741 23.35 13.12 41.37 4.01
223 224 7.278203 CACTGCAGAGATATTATATCAGCAAGG 59.722 40.741 23.35 10.05 41.37 3.61
224 225 6.111382 TGCAGAGATATTATATCAGCAAGGC 58.889 40.000 13.84 11.53 39.51 4.35
225 226 5.233902 GCAGAGATATTATATCAGCAAGGCG 59.766 44.000 13.87 0.00 33.84 5.52
226 227 6.336566 CAGAGATATTATATCAGCAAGGCGT 58.663 40.000 13.87 0.00 0.00 5.68
227 228 6.255237 CAGAGATATTATATCAGCAAGGCGTG 59.745 42.308 13.87 0.00 0.00 5.34
228 229 6.042638 AGATATTATATCAGCAAGGCGTGT 57.957 37.500 13.87 0.00 0.00 4.49
229 230 7.122799 AGAGATATTATATCAGCAAGGCGTGTA 59.877 37.037 13.87 0.00 0.00 2.90
230 231 7.261325 AGATATTATATCAGCAAGGCGTGTAG 58.739 38.462 13.87 0.00 0.00 2.74
240 241 3.966215 GCGTGTAGCACACCATGT 58.034 55.556 11.99 0.00 45.93 3.21
258 259 6.848451 ACCATGTGTGACCGAATATTAAAAC 58.152 36.000 0.00 0.00 0.00 2.43
259 260 5.963004 CCATGTGTGACCGAATATTAAAACG 59.037 40.000 0.00 0.00 0.00 3.60
261 262 5.236282 TGTGTGACCGAATATTAAAACGGA 58.764 37.500 17.44 0.00 46.94 4.69
262 263 5.875910 TGTGTGACCGAATATTAAAACGGAT 59.124 36.000 17.44 4.77 46.94 4.18
263 264 6.036300 TGTGTGACCGAATATTAAAACGGATC 59.964 38.462 17.44 12.01 46.94 3.36
264 265 6.036300 GTGTGACCGAATATTAAAACGGATCA 59.964 38.462 17.44 13.83 46.94 2.92
265 266 6.256975 TGTGACCGAATATTAAAACGGATCAG 59.743 38.462 17.44 0.00 46.94 2.90
266 267 5.756347 TGACCGAATATTAAAACGGATCAGG 59.244 40.000 17.44 0.00 46.94 3.86
267 268 5.061179 ACCGAATATTAAAACGGATCAGGG 58.939 41.667 17.44 0.00 46.94 4.45
268 269 4.083484 CCGAATATTAAAACGGATCAGGGC 60.083 45.833 7.37 0.00 46.94 5.19
269 270 4.377022 CGAATATTAAAACGGATCAGGGCG 60.377 45.833 0.00 0.00 0.00 6.13
270 271 2.413310 ATTAAAACGGATCAGGGCGT 57.587 45.000 0.00 0.00 0.00 5.68
271 272 1.729284 TTAAAACGGATCAGGGCGTC 58.271 50.000 0.00 0.00 0.00 5.19
272 273 0.609151 TAAAACGGATCAGGGCGTCA 59.391 50.000 0.00 0.00 0.00 4.35
273 274 0.953960 AAAACGGATCAGGGCGTCAC 60.954 55.000 0.00 0.00 0.00 3.67
274 275 2.798148 AAACGGATCAGGGCGTCACC 62.798 60.000 0.00 0.00 37.93 4.02
275 276 4.873129 CGGATCAGGGCGTCACCG 62.873 72.222 0.00 0.00 40.62 4.94
276 277 3.458163 GGATCAGGGCGTCACCGA 61.458 66.667 0.00 0.00 40.62 4.69
277 278 2.202756 GATCAGGGCGTCACCGAC 60.203 66.667 0.00 0.00 43.14 4.79
285 286 3.968568 CGTCACCGACCGTGTCCA 61.969 66.667 0.00 0.00 43.51 4.02
286 287 2.355481 GTCACCGACCGTGTCCAC 60.355 66.667 0.00 0.00 43.51 4.02
287 288 2.834043 TCACCGACCGTGTCCACA 60.834 61.111 0.00 0.00 43.51 4.17
288 289 2.660552 CACCGACCGTGTCCACAC 60.661 66.667 0.00 0.00 43.15 3.82
289 290 3.920196 ACCGACCGTGTCCACACC 61.920 66.667 4.25 0.00 43.66 4.16
290 291 3.918977 CCGACCGTGTCCACACCA 61.919 66.667 4.25 0.00 43.66 4.17
291 292 2.342279 CGACCGTGTCCACACCAT 59.658 61.111 4.25 0.00 43.66 3.55
292 293 1.587568 CGACCGTGTCCACACCATA 59.412 57.895 4.25 0.00 43.66 2.74
293 294 0.174845 CGACCGTGTCCACACCATAT 59.825 55.000 4.25 0.00 43.66 1.78
294 295 1.801395 CGACCGTGTCCACACCATATC 60.801 57.143 4.25 0.00 43.66 1.63
295 296 1.480954 GACCGTGTCCACACCATATCT 59.519 52.381 4.25 0.00 43.66 1.98
296 297 1.480954 ACCGTGTCCACACCATATCTC 59.519 52.381 4.25 0.00 43.66 2.75
297 298 1.757118 CCGTGTCCACACCATATCTCT 59.243 52.381 4.25 0.00 43.66 3.10
298 299 2.223829 CCGTGTCCACACCATATCTCTC 60.224 54.545 4.25 0.00 43.66 3.20
299 300 2.223829 CGTGTCCACACCATATCTCTCC 60.224 54.545 4.25 0.00 43.66 3.71
300 301 2.103263 GTGTCCACACCATATCTCTCCC 59.897 54.545 0.00 0.00 40.85 4.30
301 302 2.023015 TGTCCACACCATATCTCTCCCT 60.023 50.000 0.00 0.00 0.00 4.20
302 303 2.630580 GTCCACACCATATCTCTCCCTC 59.369 54.545 0.00 0.00 0.00 4.30
303 304 2.520120 TCCACACCATATCTCTCCCTCT 59.480 50.000 0.00 0.00 0.00 3.69
304 305 3.051803 TCCACACCATATCTCTCCCTCTT 60.052 47.826 0.00 0.00 0.00 2.85
305 306 3.323403 CCACACCATATCTCTCCCTCTTC 59.677 52.174 0.00 0.00 0.00 2.87
306 307 4.222336 CACACCATATCTCTCCCTCTTCT 58.778 47.826 0.00 0.00 0.00 2.85
307 308 4.280677 CACACCATATCTCTCCCTCTTCTC 59.719 50.000 0.00 0.00 0.00 2.87
308 309 4.078922 ACACCATATCTCTCCCTCTTCTCA 60.079 45.833 0.00 0.00 0.00 3.27
309 310 4.898265 CACCATATCTCTCCCTCTTCTCAA 59.102 45.833 0.00 0.00 0.00 3.02
310 311 4.898861 ACCATATCTCTCCCTCTTCTCAAC 59.101 45.833 0.00 0.00 0.00 3.18
311 312 4.898265 CCATATCTCTCCCTCTTCTCAACA 59.102 45.833 0.00 0.00 0.00 3.33
312 313 5.221422 CCATATCTCTCCCTCTTCTCAACAC 60.221 48.000 0.00 0.00 0.00 3.32
313 314 2.163509 TCTCTCCCTCTTCTCAACACG 58.836 52.381 0.00 0.00 0.00 4.49
314 315 0.603569 TCTCCCTCTTCTCAACACGC 59.396 55.000 0.00 0.00 0.00 5.34
315 316 0.390472 CTCCCTCTTCTCAACACGCC 60.390 60.000 0.00 0.00 0.00 5.68
316 317 1.118965 TCCCTCTTCTCAACACGCCA 61.119 55.000 0.00 0.00 0.00 5.69
317 318 0.671781 CCCTCTTCTCAACACGCCAG 60.672 60.000 0.00 0.00 0.00 4.85
318 319 0.318441 CCTCTTCTCAACACGCCAGA 59.682 55.000 0.00 0.00 0.00 3.86
319 320 1.423395 CTCTTCTCAACACGCCAGAC 58.577 55.000 0.00 0.00 0.00 3.51
320 321 0.750249 TCTTCTCAACACGCCAGACA 59.250 50.000 0.00 0.00 0.00 3.41
321 322 0.861837 CTTCTCAACACGCCAGACAC 59.138 55.000 0.00 0.00 0.00 3.67
322 323 0.874175 TTCTCAACACGCCAGACACG 60.874 55.000 0.00 0.00 0.00 4.49
323 324 1.591594 CTCAACACGCCAGACACGT 60.592 57.895 0.00 0.00 46.42 4.49
328 329 4.969196 ACGCCAGACACGTGCAGG 62.969 66.667 17.22 15.89 43.23 4.85
331 332 3.046087 CCAGACACGTGCAGGCAG 61.046 66.667 17.22 1.96 0.00 4.85
332 333 3.720193 CAGACACGTGCAGGCAGC 61.720 66.667 17.22 0.00 45.96 5.25
341 342 3.740397 GCAGGCAGCATCAACGCA 61.740 61.111 0.00 0.00 44.79 5.24
342 343 2.177531 CAGGCAGCATCAACGCAC 59.822 61.111 0.00 0.00 0.00 5.34
343 344 3.425713 AGGCAGCATCAACGCACG 61.426 61.111 0.00 0.00 0.00 5.34
344 345 4.465512 GGCAGCATCAACGCACGG 62.466 66.667 0.00 0.00 0.00 4.94
345 346 3.422303 GCAGCATCAACGCACGGA 61.422 61.111 0.00 0.00 0.00 4.69
346 347 2.965147 GCAGCATCAACGCACGGAA 61.965 57.895 0.00 0.00 0.00 4.30
347 348 1.133253 CAGCATCAACGCACGGAAG 59.867 57.895 0.00 0.00 0.00 3.46
348 349 2.202349 GCATCAACGCACGGAAGC 60.202 61.111 0.00 0.00 0.00 3.86
349 350 2.480555 CATCAACGCACGGAAGCC 59.519 61.111 0.00 0.00 0.00 4.35
350 351 2.031919 ATCAACGCACGGAAGCCA 59.968 55.556 0.00 0.00 0.00 4.75
351 352 2.034879 ATCAACGCACGGAAGCCAG 61.035 57.895 0.00 0.00 0.00 4.85
352 353 4.389576 CAACGCACGGAAGCCAGC 62.390 66.667 0.00 0.00 0.00 4.85
356 357 4.704833 GCACGGAAGCCAGCCAGA 62.705 66.667 0.00 0.00 0.00 3.86
357 358 2.435586 CACGGAAGCCAGCCAGAG 60.436 66.667 0.00 0.00 0.00 3.35
358 359 2.604686 ACGGAAGCCAGCCAGAGA 60.605 61.111 0.00 0.00 0.00 3.10
359 360 1.992277 ACGGAAGCCAGCCAGAGAT 60.992 57.895 0.00 0.00 0.00 2.75
360 361 0.687757 ACGGAAGCCAGCCAGAGATA 60.688 55.000 0.00 0.00 0.00 1.98
361 362 0.033228 CGGAAGCCAGCCAGAGATAG 59.967 60.000 0.00 0.00 0.00 2.08
362 363 1.418334 GGAAGCCAGCCAGAGATAGA 58.582 55.000 0.00 0.00 0.00 1.98
363 364 1.977129 GGAAGCCAGCCAGAGATAGAT 59.023 52.381 0.00 0.00 0.00 1.98
364 365 3.169099 GGAAGCCAGCCAGAGATAGATA 58.831 50.000 0.00 0.00 0.00 1.98
365 366 3.774216 GGAAGCCAGCCAGAGATAGATAT 59.226 47.826 0.00 0.00 0.00 1.63
366 367 4.959210 GGAAGCCAGCCAGAGATAGATATA 59.041 45.833 0.00 0.00 0.00 0.86
367 368 5.602145 GGAAGCCAGCCAGAGATAGATATAT 59.398 44.000 0.00 0.00 0.00 0.86
368 369 6.780031 GGAAGCCAGCCAGAGATAGATATATA 59.220 42.308 0.00 0.00 0.00 0.86
369 370 7.454380 GGAAGCCAGCCAGAGATAGATATATAT 59.546 40.741 0.00 0.00 0.00 0.86
370 371 8.795899 AAGCCAGCCAGAGATAGATATATATT 57.204 34.615 0.00 0.00 0.00 1.28
371 372 8.421249 AGCCAGCCAGAGATAGATATATATTC 57.579 38.462 0.00 0.00 0.00 1.75
372 373 7.454380 AGCCAGCCAGAGATAGATATATATTCC 59.546 40.741 0.00 0.00 0.00 3.01
373 374 7.310361 GCCAGCCAGAGATAGATATATATTCCC 60.310 44.444 0.00 0.00 0.00 3.97
374 375 7.093988 CCAGCCAGAGATAGATATATATTCCCG 60.094 44.444 0.00 0.00 0.00 5.14
375 376 6.951198 AGCCAGAGATAGATATATATTCCCGG 59.049 42.308 0.00 0.00 0.00 5.73
376 377 6.948886 GCCAGAGATAGATATATATTCCCGGA 59.051 42.308 0.73 0.00 0.00 5.14
377 378 7.451877 GCCAGAGATAGATATATATTCCCGGAA 59.548 40.741 0.73 1.31 0.00 4.30
378 379 9.540538 CCAGAGATAGATATATATTCCCGGAAT 57.459 37.037 16.94 16.94 36.20 3.01
385 386 8.763984 AGATATATATTCCCGGAATTACTCGT 57.236 34.615 17.92 1.31 33.95 4.18
386 387 8.848182 AGATATATATTCCCGGAATTACTCGTC 58.152 37.037 17.92 9.63 33.95 4.20
387 388 2.904697 ATTCCCGGAATTACTCGTCC 57.095 50.000 0.73 0.00 0.00 4.79
388 389 1.559368 TTCCCGGAATTACTCGTCCA 58.441 50.000 0.73 0.00 33.10 4.02
389 390 1.559368 TCCCGGAATTACTCGTCCAA 58.441 50.000 0.73 0.00 33.10 3.53
390 391 1.479323 TCCCGGAATTACTCGTCCAAG 59.521 52.381 0.73 0.00 33.10 3.61
391 392 1.479323 CCCGGAATTACTCGTCCAAGA 59.521 52.381 0.73 0.00 33.10 3.02
392 393 2.093869 CCCGGAATTACTCGTCCAAGAA 60.094 50.000 0.73 0.00 33.10 2.52
393 394 3.592059 CCGGAATTACTCGTCCAAGAAA 58.408 45.455 0.00 0.00 33.10 2.52
394 395 4.189231 CCGGAATTACTCGTCCAAGAAAT 58.811 43.478 0.00 0.00 33.10 2.17
395 396 4.034048 CCGGAATTACTCGTCCAAGAAATG 59.966 45.833 0.00 0.00 33.10 2.32
396 397 4.868171 CGGAATTACTCGTCCAAGAAATGA 59.132 41.667 0.00 0.00 33.10 2.57
397 398 5.350365 CGGAATTACTCGTCCAAGAAATGAA 59.650 40.000 0.00 0.00 33.10 2.57
398 399 6.037172 CGGAATTACTCGTCCAAGAAATGAAT 59.963 38.462 0.00 0.00 33.10 2.57
399 400 7.189512 GGAATTACTCGTCCAAGAAATGAATG 58.810 38.462 0.00 0.00 33.79 2.67
400 401 7.148239 GGAATTACTCGTCCAAGAAATGAATGT 60.148 37.037 0.00 0.00 33.79 2.71
401 402 8.786826 AATTACTCGTCCAAGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
402 403 8.964476 ATTACTCGTCCAAGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
403 404 6.910536 ACTCGTCCAAGAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
404 405 6.644347 ACTCGTCCAAGAAATGAATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
405 406 7.782049 ACTCGTCCAAGAAATGAATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
406 407 7.923344 ACTCGTCCAAGAAATGAATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
407 408 8.007405 TCGTCCAAGAAATGAATGTATCTAGA 57.993 34.615 0.00 0.00 0.00 2.43
408 409 8.642432 TCGTCCAAGAAATGAATGTATCTAGAT 58.358 33.333 10.73 10.73 0.00 1.98
409 410 8.706936 CGTCCAAGAAATGAATGTATCTAGATG 58.293 37.037 15.79 0.00 0.00 2.90
410 411 9.553064 GTCCAAGAAATGAATGTATCTAGATGT 57.447 33.333 15.79 0.00 0.00 3.06
440 441 9.733556 TTAGTTGTAGATACATCCATTTTGTGT 57.266 29.630 0.00 0.00 35.89 3.72
441 442 8.044060 AGTTGTAGATACATCCATTTTGTGTG 57.956 34.615 0.00 0.00 35.89 3.82
442 443 7.882791 AGTTGTAGATACATCCATTTTGTGTGA 59.117 33.333 0.00 0.00 35.89 3.58
443 444 7.609760 TGTAGATACATCCATTTTGTGTGAC 57.390 36.000 0.00 0.00 0.00 3.67
444 445 7.164803 TGTAGATACATCCATTTTGTGTGACA 58.835 34.615 0.00 0.00 0.00 3.58
445 446 7.663493 TGTAGATACATCCATTTTGTGTGACAA 59.337 33.333 0.00 0.00 36.11 3.18
446 447 7.149569 AGATACATCCATTTTGTGTGACAAG 57.850 36.000 0.00 0.00 39.53 3.16
447 448 6.716628 AGATACATCCATTTTGTGTGACAAGT 59.283 34.615 0.00 0.00 39.53 3.16
448 449 7.882791 AGATACATCCATTTTGTGTGACAAGTA 59.117 33.333 0.00 0.00 39.53 2.24
449 450 6.707440 ACATCCATTTTGTGTGACAAGTAA 57.293 33.333 0.00 0.00 39.53 2.24
450 451 7.288810 ACATCCATTTTGTGTGACAAGTAAT 57.711 32.000 0.00 0.00 39.53 1.89
451 452 7.725251 ACATCCATTTTGTGTGACAAGTAATT 58.275 30.769 0.00 0.00 39.53 1.40
452 453 7.867403 ACATCCATTTTGTGTGACAAGTAATTC 59.133 33.333 0.00 0.00 39.53 2.17
453 454 6.744112 TCCATTTTGTGTGACAAGTAATTCC 58.256 36.000 0.00 0.00 39.53 3.01
454 455 5.629020 CCATTTTGTGTGACAAGTAATTCCG 59.371 40.000 0.00 0.00 39.53 4.30
455 456 6.434596 CATTTTGTGTGACAAGTAATTCCGA 58.565 36.000 0.00 0.00 39.53 4.55
456 457 6.438259 TTTTGTGTGACAAGTAATTCCGAA 57.562 33.333 0.00 0.00 39.53 4.30
457 458 5.412526 TTGTGTGACAAGTAATTCCGAAC 57.587 39.130 0.00 0.00 32.34 3.95
458 459 3.491639 TGTGTGACAAGTAATTCCGAACG 59.508 43.478 0.00 0.00 0.00 3.95
459 460 3.061322 TGTGACAAGTAATTCCGAACGG 58.939 45.455 6.94 6.94 0.00 4.44
460 461 3.243805 TGTGACAAGTAATTCCGAACGGA 60.244 43.478 12.04 12.04 43.52 4.69
461 462 3.367025 GTGACAAGTAATTCCGAACGGAG 59.633 47.826 15.34 5.60 46.06 4.63
462 463 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
463 464 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
464 465 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
465 466 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
466 467 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
467 468 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
468 469 1.856629 ATTCCGAACGGAGGGAGTAA 58.143 50.000 15.34 0.34 46.06 2.24
469 470 1.856629 TTCCGAACGGAGGGAGTAAT 58.143 50.000 15.34 0.00 46.06 1.89
470 471 2.734755 TCCGAACGGAGGGAGTAATA 57.265 50.000 12.04 0.00 39.76 0.98
471 472 2.579873 TCCGAACGGAGGGAGTAATAG 58.420 52.381 12.04 0.00 39.76 1.73
472 473 2.173356 TCCGAACGGAGGGAGTAATAGA 59.827 50.000 12.04 0.00 39.76 1.98
476 477 6.070021 TCCGAACGGAGGGAGTAATAGATATA 60.070 42.308 12.04 0.00 39.76 0.86
504 505 4.009675 ACCGAAGCAAAGCATCTGAATTA 58.990 39.130 0.00 0.00 0.00 1.40
512 513 5.594926 CAAAGCATCTGAATTATGAACCCC 58.405 41.667 0.00 0.00 0.00 4.95
515 516 5.461327 AGCATCTGAATTATGAACCCCATT 58.539 37.500 0.00 0.00 36.71 3.16
516 517 5.901276 AGCATCTGAATTATGAACCCCATTT 59.099 36.000 0.00 0.00 36.71 2.32
517 518 6.384886 AGCATCTGAATTATGAACCCCATTTT 59.615 34.615 0.00 0.00 36.71 1.82
518 519 6.703165 GCATCTGAATTATGAACCCCATTTTC 59.297 38.462 0.00 0.00 36.71 2.29
519 520 7.633334 GCATCTGAATTATGAACCCCATTTTCA 60.633 37.037 0.00 0.00 37.38 2.69
520 521 7.408756 TCTGAATTATGAACCCCATTTTCAG 57.591 36.000 16.13 16.13 44.78 3.02
521 522 6.953520 TCTGAATTATGAACCCCATTTTCAGT 59.046 34.615 18.79 0.00 44.37 3.41
522 523 6.934056 TGAATTATGAACCCCATTTTCAGTG 58.066 36.000 0.00 0.00 36.44 3.66
548 549 6.790319 TCCAGATACATGCACCTATCTACTA 58.210 40.000 12.55 2.43 30.05 1.82
550 551 6.661377 CCAGATACATGCACCTATCTACTACT 59.339 42.308 12.55 0.00 30.05 2.57
551 552 7.362487 CCAGATACATGCACCTATCTACTACTG 60.362 44.444 12.55 0.00 30.05 2.74
565 566 9.731819 CTATCTACTACTGCGTTTTGATTTAGA 57.268 33.333 0.00 0.00 0.00 2.10
567 568 8.821147 TCTACTACTGCGTTTTGATTTAGAAA 57.179 30.769 0.00 0.00 0.00 2.52
589 590 1.543802 AGCTCTGAAGGAACGAGACAG 59.456 52.381 0.00 0.00 0.00 3.51
590 591 1.271102 GCTCTGAAGGAACGAGACAGT 59.729 52.381 0.00 0.00 0.00 3.55
591 592 2.669950 GCTCTGAAGGAACGAGACAGTC 60.670 54.545 0.00 0.00 0.00 3.51
592 593 1.887198 TCTGAAGGAACGAGACAGTCC 59.113 52.381 0.00 0.00 0.00 3.85
593 594 1.613925 CTGAAGGAACGAGACAGTCCA 59.386 52.381 0.00 0.00 0.00 4.02
594 595 2.035961 CTGAAGGAACGAGACAGTCCAA 59.964 50.000 0.00 0.00 0.00 3.53
595 596 2.035961 TGAAGGAACGAGACAGTCCAAG 59.964 50.000 0.00 0.00 0.00 3.61
609 610 3.937706 CAGTCCAAGGACACATCATCTTC 59.062 47.826 20.52 0.00 46.76 2.87
612 613 3.054875 TCCAAGGACACATCATCTTCCTG 60.055 47.826 0.00 0.00 38.55 3.86
616 617 2.544685 GACACATCATCTTCCTGTCCG 58.455 52.381 0.00 0.00 0.00 4.79
632 633 1.134901 CCGTCGGACTCTCGAACTG 59.865 63.158 4.91 0.00 41.05 3.16
635 636 0.179184 GTCGGACTCTCGAACTGCTC 60.179 60.000 0.00 0.00 41.05 4.26
685 704 4.161295 CGGCCCCGAGCATCTTCA 62.161 66.667 0.00 0.00 46.50 3.02
700 719 1.093159 CTTCAGCTCAATCCCTGTGC 58.907 55.000 0.00 0.00 43.49 4.57
702 721 1.078918 CAGCTCAATCCCTGTGCGA 60.079 57.895 0.00 0.00 46.85 5.10
745 764 0.179137 GTCGTGGTCATCGCTGATCA 60.179 55.000 0.00 0.00 40.24 2.92
754 773 0.855349 ATCGCTGATCAATTCGACGC 59.145 50.000 14.06 4.09 33.59 5.19
755 774 0.457681 TCGCTGATCAATTCGACGCA 60.458 50.000 9.44 0.00 0.00 5.24
774 793 2.154462 CACAGATGGTTGTCAACTCCC 58.846 52.381 15.17 0.00 0.00 4.30
786 805 1.623311 TCAACTCCCGAGAAGCAATCA 59.377 47.619 0.00 0.00 0.00 2.57
827 846 5.723887 AGAGGACTGAAGGTCTACATCATTT 59.276 40.000 0.00 0.00 43.97 2.32
831 850 5.983540 ACTGAAGGTCTACATCATTTCCTC 58.016 41.667 0.00 0.00 0.00 3.71
857 876 4.821589 CCGAGCGGTGAAGGAGCC 62.822 72.222 0.00 0.00 0.00 4.70
864 883 0.882927 CGGTGAAGGAGCCGTTGAAA 60.883 55.000 0.00 0.00 42.73 2.69
905 924 7.857734 TCAGACGAATAAATAAATGCAAGGA 57.142 32.000 0.00 0.00 0.00 3.36
915 934 2.198150 TGCAAGGAGGCAAAGGCA 59.802 55.556 0.00 0.00 41.65 4.75
916 935 2.202395 TGCAAGGAGGCAAAGGCAC 61.202 57.895 0.00 0.00 41.65 5.01
917 936 2.202395 GCAAGGAGGCAAAGGCACA 61.202 57.895 0.00 0.00 43.71 4.57
980 1009 4.423625 ACTGCTATTTGGAGACCCATAC 57.576 45.455 0.00 0.00 43.12 2.39
987 1016 4.733077 TTTGGAGACCCATACTTGGAAA 57.267 40.909 0.00 0.00 46.92 3.13
990 1019 3.591527 TGGAGACCCATACTTGGAAACAT 59.408 43.478 0.00 0.00 46.92 2.71
1062 1091 2.405191 CTCGCTCTGACGATCGCA 59.595 61.111 16.60 13.18 42.02 5.10
1176 1211 2.203922 TGCAGCTGGGAGGGTGTA 60.204 61.111 17.12 0.00 37.09 2.90
1183 1218 2.433664 GGGAGGGTGTAACGTGCG 60.434 66.667 0.00 0.00 38.12 5.34
1347 1385 4.161295 CTTGGCCGGCTCCATCGA 62.161 66.667 28.56 7.98 35.77 3.59
1384 1422 0.603569 GAGCGACAACTCCTTCTCCA 59.396 55.000 0.00 0.00 0.00 3.86
1494 1532 4.373116 GGGGACAAGCTCGCGTCA 62.373 66.667 5.77 0.00 33.66 4.35
2115 2162 8.305317 ACAAGTCTCCAACAGTTATACTTAGAC 58.695 37.037 0.00 0.00 0.00 2.59
2340 2392 9.988815 AATAGGTTTTATGCATACAACAACAAA 57.011 25.926 28.08 13.54 0.00 2.83
2500 2552 6.528537 TGTCATACAATTCATTTTCTGGGG 57.471 37.500 0.00 0.00 0.00 4.96
2599 2651 1.920574 CCGACAGTATTCAGAACTGCG 59.079 52.381 2.57 6.99 46.73 5.18
2811 2871 6.267070 GTCAATACCAGTAGCTCTACAGAAC 58.733 44.000 9.44 0.00 38.48 3.01
2918 2978 3.019564 ACTTAGCAGTTGATGGGAATGC 58.980 45.455 0.00 0.00 37.15 3.56
2966 3026 1.063492 TCATTTGGCTCCATGCTCCAT 60.063 47.619 0.00 0.00 42.39 3.41
3263 3326 5.474532 TCTTGGACAATGAGGAAAGAACATG 59.525 40.000 0.00 0.00 0.00 3.21
3345 3408 2.103094 TGAAGCCATGAGAAGGATACGG 59.897 50.000 0.00 0.00 46.39 4.02
3393 3456 3.057736 CCTCTTGTTCAAGCATCAACCAG 60.058 47.826 7.58 0.00 0.00 4.00
3513 3576 1.537397 ACTCAGCCTTGCCCAGAGA 60.537 57.895 0.00 0.00 0.00 3.10
4335 7261 9.226345 GCTATTTTATTTGCAACTGTATCAGAC 57.774 33.333 0.00 0.00 35.18 3.51
4356 7282 7.807433 TCAGACAAATGTAAAATGTCAAATCCG 59.193 33.333 7.75 0.00 44.55 4.18
4357 7283 6.586082 AGACAAATGTAAAATGTCAAATCCGC 59.414 34.615 7.75 0.00 44.55 5.54
4371 7297 4.930405 TCAAATCCGCGTGTTCTACAATAA 59.070 37.500 4.92 0.00 0.00 1.40
4374 7300 3.852286 TCCGCGTGTTCTACAATAACAT 58.148 40.909 4.92 0.00 38.95 2.71
4561 8079 8.644374 ACTGGCTAACATTTATTTACAAAGGA 57.356 30.769 0.00 0.00 0.00 3.36
4569 8087 5.545658 TTTATTTACAAAGGAGCTCTGCG 57.454 39.130 14.64 2.62 0.00 5.18
4655 8176 8.773033 ATGCATTAACCATAATTCCTTCTTCT 57.227 30.769 0.00 0.00 29.08 2.85
5015 8934 4.861196 TCAGTGTCACTCCTATCTTAGCT 58.139 43.478 1.37 0.00 0.00 3.32
5091 9010 7.149192 GCAATCATTAATTACGGAAATGTACGC 60.149 37.037 0.00 0.00 33.35 4.42
5098 9017 3.644805 ACGGAAATGTACGCATAAACG 57.355 42.857 0.00 0.00 34.39 3.60
5145 9064 5.220854 GCAACCTATGAAACATATGAAGCGT 60.221 40.000 10.38 1.96 0.00 5.07
5175 9095 0.250424 ATGCCCCTTTTGCAAAGTGC 60.250 50.000 12.41 13.30 42.92 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.467677 ACTGAAGATTTAAGCTGTTCTGCTA 58.532 36.000 4.76 0.00 43.24 3.49
2 3 5.312079 ACTGAAGATTTAAGCTGTTCTGCT 58.688 37.500 0.00 0.00 46.40 4.24
3 4 5.619625 ACTGAAGATTTAAGCTGTTCTGC 57.380 39.130 0.00 0.00 0.00 4.26
4 5 9.950680 TTTTTACTGAAGATTTAAGCTGTTCTG 57.049 29.630 0.00 0.00 0.00 3.02
26 27 9.947433 TGCATTCCTAATTCATGATTTCTTTTT 57.053 25.926 6.13 0.00 0.00 1.94
28 29 9.760077 GATGCATTCCTAATTCATGATTTCTTT 57.240 29.630 0.00 0.00 0.00 2.52
29 30 8.920174 TGATGCATTCCTAATTCATGATTTCTT 58.080 29.630 0.00 0.00 0.00 2.52
30 31 8.473358 TGATGCATTCCTAATTCATGATTTCT 57.527 30.769 0.00 0.00 0.00 2.52
31 32 7.328737 GCTGATGCATTCCTAATTCATGATTTC 59.671 37.037 0.00 0.00 39.41 2.17
32 33 7.152645 GCTGATGCATTCCTAATTCATGATTT 58.847 34.615 0.00 7.88 39.41 2.17
33 34 6.266786 TGCTGATGCATTCCTAATTCATGATT 59.733 34.615 0.00 0.00 45.31 2.57
34 35 5.773176 TGCTGATGCATTCCTAATTCATGAT 59.227 36.000 0.00 0.00 45.31 2.45
35 36 5.134661 TGCTGATGCATTCCTAATTCATGA 58.865 37.500 0.00 0.00 45.31 3.07
36 37 5.447624 TGCTGATGCATTCCTAATTCATG 57.552 39.130 0.00 0.00 45.31 3.07
50 51 2.512515 GGAGACCGGTGCTGATGC 60.513 66.667 14.63 0.00 40.20 3.91
51 52 2.202797 CGGAGACCGGTGCTGATG 60.203 66.667 14.63 0.00 44.15 3.07
63 64 1.343465 GTTCCTGGAAACTGTCGGAGA 59.657 52.381 11.40 0.00 0.00 3.71
64 65 1.797025 GTTCCTGGAAACTGTCGGAG 58.203 55.000 11.40 0.00 0.00 4.63
65 66 0.032952 CGTTCCTGGAAACTGTCGGA 59.967 55.000 11.40 0.00 0.00 4.55
66 67 1.566018 GCGTTCCTGGAAACTGTCGG 61.566 60.000 11.40 0.00 0.00 4.79
67 68 1.566018 GGCGTTCCTGGAAACTGTCG 61.566 60.000 11.40 11.09 0.00 4.35
68 69 0.250338 AGGCGTTCCTGGAAACTGTC 60.250 55.000 11.40 5.91 42.34 3.51
69 70 1.002087 CTAGGCGTTCCTGGAAACTGT 59.998 52.381 11.40 0.00 43.05 3.55
70 71 1.002087 ACTAGGCGTTCCTGGAAACTG 59.998 52.381 11.40 5.51 43.05 3.16
71 72 1.349067 ACTAGGCGTTCCTGGAAACT 58.651 50.000 11.40 11.99 43.05 2.66
72 73 1.804748 CAACTAGGCGTTCCTGGAAAC 59.195 52.381 11.40 6.44 43.05 2.78
73 74 1.695242 TCAACTAGGCGTTCCTGGAAA 59.305 47.619 11.40 0.00 43.05 3.13
74 75 1.344065 TCAACTAGGCGTTCCTGGAA 58.656 50.000 4.68 4.68 43.05 3.53
75 76 1.480954 GATCAACTAGGCGTTCCTGGA 59.519 52.381 1.62 0.00 43.05 3.86
76 77 1.802880 CGATCAACTAGGCGTTCCTGG 60.803 57.143 0.00 0.00 44.08 4.45
77 78 1.560923 CGATCAACTAGGCGTTCCTG 58.439 55.000 0.00 0.00 44.08 3.86
78 79 0.460311 CCGATCAACTAGGCGTTCCT 59.540 55.000 0.00 0.00 46.57 3.36
79 80 0.458669 TCCGATCAACTAGGCGTTCC 59.541 55.000 0.00 0.00 32.27 3.62
80 81 2.223735 TGATCCGATCAACTAGGCGTTC 60.224 50.000 8.70 0.00 36.11 3.95
81 82 1.754803 TGATCCGATCAACTAGGCGTT 59.245 47.619 8.70 0.00 36.11 4.84
82 83 1.338337 CTGATCCGATCAACTAGGCGT 59.662 52.381 12.16 0.00 39.11 5.68
83 84 1.609072 TCTGATCCGATCAACTAGGCG 59.391 52.381 12.16 0.00 39.11 5.52
84 85 3.951775 ATCTGATCCGATCAACTAGGC 57.048 47.619 12.16 0.00 39.11 3.93
85 86 5.221322 TGTCAATCTGATCCGATCAACTAGG 60.221 44.000 12.16 0.95 39.11 3.02
86 87 5.836347 TGTCAATCTGATCCGATCAACTAG 58.164 41.667 12.16 1.30 39.11 2.57
87 88 5.852282 TGTCAATCTGATCCGATCAACTA 57.148 39.130 12.16 2.02 39.11 2.24
88 89 4.743057 TGTCAATCTGATCCGATCAACT 57.257 40.909 12.16 0.19 39.11 3.16
89 90 4.631377 TGTTGTCAATCTGATCCGATCAAC 59.369 41.667 12.16 16.60 39.11 3.18
90 91 4.631377 GTGTTGTCAATCTGATCCGATCAA 59.369 41.667 12.16 4.52 39.11 2.57
91 92 4.081476 AGTGTTGTCAATCTGATCCGATCA 60.081 41.667 10.67 10.67 37.76 2.92
92 93 4.437239 AGTGTTGTCAATCTGATCCGATC 58.563 43.478 0.00 1.01 0.00 3.69
93 94 4.478206 AGTGTTGTCAATCTGATCCGAT 57.522 40.909 0.00 0.00 0.00 4.18
94 95 3.961480 AGTGTTGTCAATCTGATCCGA 57.039 42.857 0.00 0.00 0.00 4.55
95 96 6.480524 TTTTAGTGTTGTCAATCTGATCCG 57.519 37.500 0.00 0.00 0.00 4.18
104 105 9.666626 CGGTGTTTATATTTTTAGTGTTGTCAA 57.333 29.630 0.00 0.00 0.00 3.18
105 106 9.053840 TCGGTGTTTATATTTTTAGTGTTGTCA 57.946 29.630 0.00 0.00 0.00 3.58
106 107 9.321590 GTCGGTGTTTATATTTTTAGTGTTGTC 57.678 33.333 0.00 0.00 0.00 3.18
107 108 8.838365 TGTCGGTGTTTATATTTTTAGTGTTGT 58.162 29.630 0.00 0.00 0.00 3.32
108 109 9.325150 CTGTCGGTGTTTATATTTTTAGTGTTG 57.675 33.333 0.00 0.00 0.00 3.33
109 110 8.019094 GCTGTCGGTGTTTATATTTTTAGTGTT 58.981 33.333 0.00 0.00 0.00 3.32
110 111 7.173562 TGCTGTCGGTGTTTATATTTTTAGTGT 59.826 33.333 0.00 0.00 0.00 3.55
111 112 7.480542 GTGCTGTCGGTGTTTATATTTTTAGTG 59.519 37.037 0.00 0.00 0.00 2.74
112 113 7.361457 GGTGCTGTCGGTGTTTATATTTTTAGT 60.361 37.037 0.00 0.00 0.00 2.24
113 114 6.964934 GGTGCTGTCGGTGTTTATATTTTTAG 59.035 38.462 0.00 0.00 0.00 1.85
114 115 6.655848 AGGTGCTGTCGGTGTTTATATTTTTA 59.344 34.615 0.00 0.00 0.00 1.52
115 116 5.475564 AGGTGCTGTCGGTGTTTATATTTTT 59.524 36.000 0.00 0.00 0.00 1.94
116 117 5.007682 AGGTGCTGTCGGTGTTTATATTTT 58.992 37.500 0.00 0.00 0.00 1.82
117 118 4.585879 AGGTGCTGTCGGTGTTTATATTT 58.414 39.130 0.00 0.00 0.00 1.40
118 119 4.216411 AGGTGCTGTCGGTGTTTATATT 57.784 40.909 0.00 0.00 0.00 1.28
119 120 3.906720 AGGTGCTGTCGGTGTTTATAT 57.093 42.857 0.00 0.00 0.00 0.86
120 121 3.331150 CAAGGTGCTGTCGGTGTTTATA 58.669 45.455 0.00 0.00 0.00 0.98
121 122 2.151202 CAAGGTGCTGTCGGTGTTTAT 58.849 47.619 0.00 0.00 0.00 1.40
122 123 1.588674 CAAGGTGCTGTCGGTGTTTA 58.411 50.000 0.00 0.00 0.00 2.01
123 124 1.101049 CCAAGGTGCTGTCGGTGTTT 61.101 55.000 0.00 0.00 0.00 2.83
124 125 1.525995 CCAAGGTGCTGTCGGTGTT 60.526 57.895 0.00 0.00 0.00 3.32
125 126 1.404479 TACCAAGGTGCTGTCGGTGT 61.404 55.000 1.07 0.00 0.00 4.16
126 127 0.670546 CTACCAAGGTGCTGTCGGTG 60.671 60.000 1.07 0.00 0.00 4.94
127 128 1.671742 CTACCAAGGTGCTGTCGGT 59.328 57.895 1.07 0.00 0.00 4.69
128 129 1.741770 GCTACCAAGGTGCTGTCGG 60.742 63.158 1.07 0.00 0.00 4.79
129 130 1.005037 TGCTACCAAGGTGCTGTCG 60.005 57.895 1.07 0.00 0.00 4.35
130 131 1.301677 GCTGCTACCAAGGTGCTGTC 61.302 60.000 1.07 2.06 0.00 3.51
131 132 1.302832 GCTGCTACCAAGGTGCTGT 60.303 57.895 1.07 0.00 0.00 4.40
132 133 1.302752 TGCTGCTACCAAGGTGCTG 60.303 57.895 1.07 8.66 0.00 4.41
133 134 1.002868 CTGCTGCTACCAAGGTGCT 60.003 57.895 1.07 0.00 0.00 4.40
134 135 2.042831 CCTGCTGCTACCAAGGTGC 61.043 63.158 1.07 4.53 0.00 5.01
135 136 0.392193 CTCCTGCTGCTACCAAGGTG 60.392 60.000 1.07 0.00 0.00 4.00
136 137 0.838122 ACTCCTGCTGCTACCAAGGT 60.838 55.000 0.00 0.00 0.00 3.50
137 138 0.326264 AACTCCTGCTGCTACCAAGG 59.674 55.000 0.00 0.00 0.00 3.61
138 139 1.808945 CAAACTCCTGCTGCTACCAAG 59.191 52.381 0.00 0.00 0.00 3.61
139 140 1.419762 TCAAACTCCTGCTGCTACCAA 59.580 47.619 0.00 0.00 0.00 3.67
140 141 1.055849 TCAAACTCCTGCTGCTACCA 58.944 50.000 0.00 0.00 0.00 3.25
141 142 2.185004 TTCAAACTCCTGCTGCTACC 57.815 50.000 0.00 0.00 0.00 3.18
142 143 3.753272 TCAATTCAAACTCCTGCTGCTAC 59.247 43.478 0.00 0.00 0.00 3.58
143 144 4.005650 CTCAATTCAAACTCCTGCTGCTA 58.994 43.478 0.00 0.00 0.00 3.49
144 145 2.818432 CTCAATTCAAACTCCTGCTGCT 59.182 45.455 0.00 0.00 0.00 4.24
145 146 2.670509 GCTCAATTCAAACTCCTGCTGC 60.671 50.000 0.00 0.00 0.00 5.25
146 147 2.094854 GGCTCAATTCAAACTCCTGCTG 60.095 50.000 0.00 0.00 0.00 4.41
147 148 2.165998 GGCTCAATTCAAACTCCTGCT 58.834 47.619 0.00 0.00 0.00 4.24
148 149 2.163211 GAGGCTCAATTCAAACTCCTGC 59.837 50.000 10.25 0.00 0.00 4.85
149 150 3.190118 GTGAGGCTCAATTCAAACTCCTG 59.810 47.826 20.62 0.00 0.00 3.86
150 151 3.181440 TGTGAGGCTCAATTCAAACTCCT 60.181 43.478 20.62 0.00 0.00 3.69
151 152 3.149196 TGTGAGGCTCAATTCAAACTCC 58.851 45.455 20.62 3.02 0.00 3.85
152 153 3.190118 CCTGTGAGGCTCAATTCAAACTC 59.810 47.826 20.62 3.80 0.00 3.01
153 154 3.152341 CCTGTGAGGCTCAATTCAAACT 58.848 45.455 20.62 0.00 0.00 2.66
154 155 2.229784 CCCTGTGAGGCTCAATTCAAAC 59.770 50.000 20.62 5.38 32.73 2.93
155 156 2.158475 ACCCTGTGAGGCTCAATTCAAA 60.158 45.455 20.62 0.15 32.73 2.69
156 157 1.425066 ACCCTGTGAGGCTCAATTCAA 59.575 47.619 20.62 1.97 32.73 2.69
157 158 1.003580 GACCCTGTGAGGCTCAATTCA 59.996 52.381 20.62 12.34 32.73 2.57
158 159 1.003580 TGACCCTGTGAGGCTCAATTC 59.996 52.381 20.62 7.77 32.73 2.17
159 160 1.067295 TGACCCTGTGAGGCTCAATT 58.933 50.000 20.62 1.32 32.73 2.32
160 161 1.067295 TTGACCCTGTGAGGCTCAAT 58.933 50.000 20.62 2.35 32.73 2.57
161 162 0.108585 GTTGACCCTGTGAGGCTCAA 59.891 55.000 20.62 8.87 32.73 3.02
162 163 1.053835 TGTTGACCCTGTGAGGCTCA 61.054 55.000 14.43 14.43 32.73 4.26
163 164 0.108585 TTGTTGACCCTGTGAGGCTC 59.891 55.000 7.79 7.79 32.73 4.70
164 165 0.550914 TTTGTTGACCCTGTGAGGCT 59.449 50.000 0.00 0.00 32.73 4.58
165 166 1.338020 CTTTTGTTGACCCTGTGAGGC 59.662 52.381 0.00 0.00 32.73 4.70
166 167 2.930950 TCTTTTGTTGACCCTGTGAGG 58.069 47.619 0.00 0.00 34.30 3.86
167 168 3.243201 GCTTCTTTTGTTGACCCTGTGAG 60.243 47.826 0.00 0.00 0.00 3.51
168 169 2.687935 GCTTCTTTTGTTGACCCTGTGA 59.312 45.455 0.00 0.00 0.00 3.58
169 170 2.689983 AGCTTCTTTTGTTGACCCTGTG 59.310 45.455 0.00 0.00 0.00 3.66
170 171 2.689983 CAGCTTCTTTTGTTGACCCTGT 59.310 45.455 0.00 0.00 0.00 4.00
171 172 2.035066 CCAGCTTCTTTTGTTGACCCTG 59.965 50.000 0.00 0.00 0.00 4.45
172 173 2.091885 TCCAGCTTCTTTTGTTGACCCT 60.092 45.455 0.00 0.00 0.00 4.34
173 174 2.306847 TCCAGCTTCTTTTGTTGACCC 58.693 47.619 0.00 0.00 0.00 4.46
174 175 4.301628 CAATCCAGCTTCTTTTGTTGACC 58.698 43.478 0.00 0.00 0.00 4.02
175 176 3.737774 GCAATCCAGCTTCTTTTGTTGAC 59.262 43.478 0.00 0.00 0.00 3.18
176 177 3.384146 TGCAATCCAGCTTCTTTTGTTGA 59.616 39.130 0.00 0.00 34.99 3.18
177 178 3.492011 GTGCAATCCAGCTTCTTTTGTTG 59.508 43.478 0.00 0.00 34.99 3.33
178 179 3.385755 AGTGCAATCCAGCTTCTTTTGTT 59.614 39.130 0.00 0.00 34.99 2.83
179 180 2.961062 AGTGCAATCCAGCTTCTTTTGT 59.039 40.909 0.00 0.00 34.99 2.83
180 181 3.314553 CAGTGCAATCCAGCTTCTTTTG 58.685 45.455 0.00 0.00 34.99 2.44
181 182 2.288640 GCAGTGCAATCCAGCTTCTTTT 60.289 45.455 11.09 0.00 34.99 2.27
182 183 1.271656 GCAGTGCAATCCAGCTTCTTT 59.728 47.619 11.09 0.00 34.99 2.52
183 184 0.886563 GCAGTGCAATCCAGCTTCTT 59.113 50.000 11.09 0.00 34.99 2.52
184 185 0.251033 TGCAGTGCAATCCAGCTTCT 60.251 50.000 17.26 0.00 34.76 2.85
185 186 0.170561 CTGCAGTGCAATCCAGCTTC 59.829 55.000 20.22 0.00 38.41 3.86
186 187 0.251033 TCTGCAGTGCAATCCAGCTT 60.251 50.000 20.22 0.00 38.41 3.74
187 188 0.677098 CTCTGCAGTGCAATCCAGCT 60.677 55.000 20.22 0.00 38.41 4.24
188 189 0.675837 TCTCTGCAGTGCAATCCAGC 60.676 55.000 20.22 0.00 38.41 4.85
189 190 2.039818 ATCTCTGCAGTGCAATCCAG 57.960 50.000 20.22 12.25 38.41 3.86
190 191 3.851458 ATATCTCTGCAGTGCAATCCA 57.149 42.857 20.22 3.70 38.41 3.41
191 192 7.767659 TGATATAATATCTCTGCAGTGCAATCC 59.232 37.037 20.22 3.88 38.41 3.01
192 193 8.713737 TGATATAATATCTCTGCAGTGCAATC 57.286 34.615 20.22 14.54 38.41 2.67
193 194 7.280428 GCTGATATAATATCTCTGCAGTGCAAT 59.720 37.037 20.22 12.46 38.41 3.56
194 195 6.592994 GCTGATATAATATCTCTGCAGTGCAA 59.407 38.462 20.22 4.63 38.41 4.08
195 196 6.104665 GCTGATATAATATCTCTGCAGTGCA 58.895 40.000 18.58 18.58 34.94 4.57
196 197 6.104665 TGCTGATATAATATCTCTGCAGTGC 58.895 40.000 14.67 8.58 38.44 4.40
197 198 7.278203 CCTTGCTGATATAATATCTCTGCAGTG 59.722 40.741 14.67 11.96 42.32 3.66
198 199 7.329499 CCTTGCTGATATAATATCTCTGCAGT 58.671 38.462 14.67 0.00 42.32 4.40
199 200 6.258287 GCCTTGCTGATATAATATCTCTGCAG 59.742 42.308 7.63 7.63 42.32 4.41
200 201 6.111382 GCCTTGCTGATATAATATCTCTGCA 58.889 40.000 13.39 13.39 40.58 4.41
201 202 5.233902 CGCCTTGCTGATATAATATCTCTGC 59.766 44.000 9.48 9.48 35.27 4.26
202 203 6.255237 CACGCCTTGCTGATATAATATCTCTG 59.745 42.308 0.00 0.00 0.00 3.35
203 204 6.071108 ACACGCCTTGCTGATATAATATCTCT 60.071 38.462 0.00 0.00 0.00 3.10
204 205 6.102663 ACACGCCTTGCTGATATAATATCTC 58.897 40.000 0.00 0.00 0.00 2.75
205 206 6.042638 ACACGCCTTGCTGATATAATATCT 57.957 37.500 0.00 0.00 0.00 1.98
206 207 6.019479 GCTACACGCCTTGCTGATATAATATC 60.019 42.308 0.00 0.00 0.00 1.63
207 208 5.812642 GCTACACGCCTTGCTGATATAATAT 59.187 40.000 0.00 0.00 0.00 1.28
208 209 5.168569 GCTACACGCCTTGCTGATATAATA 58.831 41.667 0.00 0.00 0.00 0.98
209 210 3.997021 GCTACACGCCTTGCTGATATAAT 59.003 43.478 0.00 0.00 0.00 1.28
210 211 3.181470 TGCTACACGCCTTGCTGATATAA 60.181 43.478 0.00 0.00 38.05 0.98
211 212 2.364002 TGCTACACGCCTTGCTGATATA 59.636 45.455 0.00 0.00 38.05 0.86
212 213 1.138859 TGCTACACGCCTTGCTGATAT 59.861 47.619 0.00 0.00 38.05 1.63
213 214 0.534873 TGCTACACGCCTTGCTGATA 59.465 50.000 0.00 0.00 38.05 2.15
214 215 1.021390 GTGCTACACGCCTTGCTGAT 61.021 55.000 0.00 0.00 38.05 2.90
215 216 1.667830 GTGCTACACGCCTTGCTGA 60.668 57.895 0.00 0.00 38.05 4.26
216 217 1.960763 TGTGCTACACGCCTTGCTG 60.961 57.895 0.00 0.00 37.14 4.41
217 218 1.961277 GTGTGCTACACGCCTTGCT 60.961 57.895 0.00 0.00 39.53 3.91
218 219 2.556287 GTGTGCTACACGCCTTGC 59.444 61.111 0.00 0.00 39.53 4.01
234 235 6.402766 CGTTTTAATATTCGGTCACACATGGT 60.403 38.462 0.00 0.00 0.00 3.55
235 236 5.963004 CGTTTTAATATTCGGTCACACATGG 59.037 40.000 0.00 0.00 0.00 3.66
236 237 5.963004 CCGTTTTAATATTCGGTCACACATG 59.037 40.000 5.39 0.00 38.45 3.21
237 238 5.875910 TCCGTTTTAATATTCGGTCACACAT 59.124 36.000 11.72 0.00 42.95 3.21
238 239 5.236282 TCCGTTTTAATATTCGGTCACACA 58.764 37.500 11.72 0.00 42.95 3.72
239 240 5.783100 TCCGTTTTAATATTCGGTCACAC 57.217 39.130 11.72 0.00 42.95 3.82
240 241 6.107343 TGATCCGTTTTAATATTCGGTCACA 58.893 36.000 11.72 8.51 42.95 3.58
241 242 6.292703 CCTGATCCGTTTTAATATTCGGTCAC 60.293 42.308 11.72 6.67 42.95 3.67
242 243 5.756347 CCTGATCCGTTTTAATATTCGGTCA 59.244 40.000 11.72 12.49 42.95 4.02
243 244 5.178809 CCCTGATCCGTTTTAATATTCGGTC 59.821 44.000 11.72 9.59 42.95 4.79
244 245 5.061179 CCCTGATCCGTTTTAATATTCGGT 58.939 41.667 11.72 2.09 42.95 4.69
245 246 4.083484 GCCCTGATCCGTTTTAATATTCGG 60.083 45.833 6.92 6.92 43.65 4.30
246 247 4.377022 CGCCCTGATCCGTTTTAATATTCG 60.377 45.833 0.00 0.00 0.00 3.34
247 248 4.514066 ACGCCCTGATCCGTTTTAATATTC 59.486 41.667 0.00 0.00 33.26 1.75
248 249 4.457466 ACGCCCTGATCCGTTTTAATATT 58.543 39.130 0.00 0.00 33.26 1.28
249 250 4.062991 GACGCCCTGATCCGTTTTAATAT 58.937 43.478 0.00 0.00 37.87 1.28
250 251 3.118702 TGACGCCCTGATCCGTTTTAATA 60.119 43.478 0.00 0.00 37.87 0.98
251 252 2.285977 GACGCCCTGATCCGTTTTAAT 58.714 47.619 0.00 0.00 37.87 1.40
252 253 1.002201 TGACGCCCTGATCCGTTTTAA 59.998 47.619 0.00 0.00 37.87 1.52
253 254 0.609151 TGACGCCCTGATCCGTTTTA 59.391 50.000 0.00 0.00 37.87 1.52
254 255 0.953960 GTGACGCCCTGATCCGTTTT 60.954 55.000 0.00 0.00 37.87 2.43
255 256 1.375523 GTGACGCCCTGATCCGTTT 60.376 57.895 0.00 0.00 37.87 3.60
256 257 2.264794 GTGACGCCCTGATCCGTT 59.735 61.111 0.00 0.00 37.87 4.44
257 258 3.771160 GGTGACGCCCTGATCCGT 61.771 66.667 0.00 0.00 40.85 4.69
279 280 2.103263 GGGAGAGATATGGTGTGGACAC 59.897 54.545 0.99 0.99 45.72 3.67
280 281 2.023015 AGGGAGAGATATGGTGTGGACA 60.023 50.000 0.00 0.00 0.00 4.02
281 282 2.630580 GAGGGAGAGATATGGTGTGGAC 59.369 54.545 0.00 0.00 0.00 4.02
282 283 2.520120 AGAGGGAGAGATATGGTGTGGA 59.480 50.000 0.00 0.00 0.00 4.02
283 284 2.969628 AGAGGGAGAGATATGGTGTGG 58.030 52.381 0.00 0.00 0.00 4.17
284 285 4.222336 AGAAGAGGGAGAGATATGGTGTG 58.778 47.826 0.00 0.00 0.00 3.82
285 286 4.078922 TGAGAAGAGGGAGAGATATGGTGT 60.079 45.833 0.00 0.00 0.00 4.16
286 287 4.478203 TGAGAAGAGGGAGAGATATGGTG 58.522 47.826 0.00 0.00 0.00 4.17
287 288 4.823364 TGAGAAGAGGGAGAGATATGGT 57.177 45.455 0.00 0.00 0.00 3.55
288 289 4.898265 TGTTGAGAAGAGGGAGAGATATGG 59.102 45.833 0.00 0.00 0.00 2.74
289 290 5.507149 CGTGTTGAGAAGAGGGAGAGATATG 60.507 48.000 0.00 0.00 0.00 1.78
290 291 4.582656 CGTGTTGAGAAGAGGGAGAGATAT 59.417 45.833 0.00 0.00 0.00 1.63
291 292 3.948473 CGTGTTGAGAAGAGGGAGAGATA 59.052 47.826 0.00 0.00 0.00 1.98
292 293 2.757868 CGTGTTGAGAAGAGGGAGAGAT 59.242 50.000 0.00 0.00 0.00 2.75
293 294 2.163509 CGTGTTGAGAAGAGGGAGAGA 58.836 52.381 0.00 0.00 0.00 3.10
294 295 1.403514 GCGTGTTGAGAAGAGGGAGAG 60.404 57.143 0.00 0.00 0.00 3.20
295 296 0.603569 GCGTGTTGAGAAGAGGGAGA 59.396 55.000 0.00 0.00 0.00 3.71
296 297 0.390472 GGCGTGTTGAGAAGAGGGAG 60.390 60.000 0.00 0.00 0.00 4.30
297 298 1.118965 TGGCGTGTTGAGAAGAGGGA 61.119 55.000 0.00 0.00 0.00 4.20
298 299 0.671781 CTGGCGTGTTGAGAAGAGGG 60.672 60.000 0.00 0.00 0.00 4.30
299 300 0.318441 TCTGGCGTGTTGAGAAGAGG 59.682 55.000 0.00 0.00 0.00 3.69
300 301 1.269778 TGTCTGGCGTGTTGAGAAGAG 60.270 52.381 0.00 0.00 0.00 2.85
301 302 0.750249 TGTCTGGCGTGTTGAGAAGA 59.250 50.000 0.00 0.00 0.00 2.87
302 303 0.861837 GTGTCTGGCGTGTTGAGAAG 59.138 55.000 0.00 0.00 0.00 2.85
303 304 0.874175 CGTGTCTGGCGTGTTGAGAA 60.874 55.000 0.00 0.00 0.00 2.87
304 305 1.299850 CGTGTCTGGCGTGTTGAGA 60.300 57.895 0.00 0.00 0.00 3.27
305 306 1.591594 ACGTGTCTGGCGTGTTGAG 60.592 57.895 0.00 0.00 41.33 3.02
306 307 2.497293 ACGTGTCTGGCGTGTTGA 59.503 55.556 0.00 0.00 41.33 3.18
311 312 4.969196 CCTGCACGTGTCTGGCGT 62.969 66.667 18.38 0.00 43.90 5.68
314 315 3.046087 CTGCCTGCACGTGTCTGG 61.046 66.667 18.38 20.93 0.00 3.86
315 316 3.720193 GCTGCCTGCACGTGTCTG 61.720 66.667 18.38 12.71 42.31 3.51
324 325 3.740397 TGCGTTGATGCTGCCTGC 61.740 61.111 0.00 0.00 43.25 4.85
325 326 2.177531 GTGCGTTGATGCTGCCTG 59.822 61.111 0.00 0.00 35.36 4.85
326 327 3.425713 CGTGCGTTGATGCTGCCT 61.426 61.111 0.00 0.00 35.36 4.75
327 328 4.465512 CCGTGCGTTGATGCTGCC 62.466 66.667 0.00 0.00 35.36 4.85
328 329 2.839324 CTTCCGTGCGTTGATGCTGC 62.839 60.000 0.00 0.00 35.36 5.25
329 330 1.133253 CTTCCGTGCGTTGATGCTG 59.867 57.895 0.00 0.00 35.36 4.41
330 331 2.680913 GCTTCCGTGCGTTGATGCT 61.681 57.895 0.00 0.00 35.36 3.79
331 332 2.202349 GCTTCCGTGCGTTGATGC 60.202 61.111 0.00 0.00 0.00 3.91
332 333 2.244436 CTGGCTTCCGTGCGTTGATG 62.244 60.000 0.00 0.00 0.00 3.07
333 334 2.031919 TGGCTTCCGTGCGTTGAT 59.968 55.556 0.00 0.00 0.00 2.57
334 335 2.664851 CTGGCTTCCGTGCGTTGA 60.665 61.111 0.00 0.00 0.00 3.18
335 336 4.389576 GCTGGCTTCCGTGCGTTG 62.390 66.667 0.00 0.00 0.00 4.10
339 340 4.704833 TCTGGCTGGCTTCCGTGC 62.705 66.667 2.00 0.00 0.00 5.34
340 341 2.249413 ATCTCTGGCTGGCTTCCGTG 62.249 60.000 2.00 0.00 0.00 4.94
341 342 0.687757 TATCTCTGGCTGGCTTCCGT 60.688 55.000 2.00 0.00 0.00 4.69
342 343 0.033228 CTATCTCTGGCTGGCTTCCG 59.967 60.000 2.00 0.00 0.00 4.30
343 344 1.418334 TCTATCTCTGGCTGGCTTCC 58.582 55.000 2.00 0.00 0.00 3.46
344 345 6.729690 ATATATCTATCTCTGGCTGGCTTC 57.270 41.667 2.00 0.00 0.00 3.86
345 346 8.795899 AATATATATCTATCTCTGGCTGGCTT 57.204 34.615 2.00 0.00 0.00 4.35
346 347 7.454380 GGAATATATATCTATCTCTGGCTGGCT 59.546 40.741 2.00 0.00 0.00 4.75
347 348 7.310361 GGGAATATATATCTATCTCTGGCTGGC 60.310 44.444 0.00 0.00 0.00 4.85
348 349 7.093988 CGGGAATATATATCTATCTCTGGCTGG 60.094 44.444 0.00 0.00 0.00 4.85
349 350 7.093988 CCGGGAATATATATCTATCTCTGGCTG 60.094 44.444 0.00 0.00 0.00 4.85
350 351 6.951198 CCGGGAATATATATCTATCTCTGGCT 59.049 42.308 0.00 0.00 0.00 4.75
351 352 6.948886 TCCGGGAATATATATCTATCTCTGGC 59.051 42.308 0.00 0.00 0.00 4.85
352 353 8.941995 TTCCGGGAATATATATCTATCTCTGG 57.058 38.462 5.09 0.80 0.00 3.86
359 360 9.857656 ACGAGTAATTCCGGGAATATATATCTA 57.142 33.333 22.00 6.81 31.46 1.98
360 361 8.763984 ACGAGTAATTCCGGGAATATATATCT 57.236 34.615 22.00 13.23 31.46 1.98
361 362 8.081025 GGACGAGTAATTCCGGGAATATATATC 58.919 40.741 22.00 14.54 31.46 1.63
362 363 7.562454 TGGACGAGTAATTCCGGGAATATATAT 59.438 37.037 22.00 9.18 31.46 0.86
363 364 6.891361 TGGACGAGTAATTCCGGGAATATATA 59.109 38.462 22.00 8.90 31.46 0.86
364 365 5.718130 TGGACGAGTAATTCCGGGAATATAT 59.282 40.000 22.00 9.89 31.46 0.86
365 366 5.078949 TGGACGAGTAATTCCGGGAATATA 58.921 41.667 22.00 13.36 31.46 0.86
366 367 3.899360 TGGACGAGTAATTCCGGGAATAT 59.101 43.478 22.00 14.24 31.46 1.28
367 368 3.298619 TGGACGAGTAATTCCGGGAATA 58.701 45.455 22.00 8.45 31.46 1.75
368 369 2.112998 TGGACGAGTAATTCCGGGAAT 58.887 47.619 16.53 16.53 33.25 3.01
369 370 1.559368 TGGACGAGTAATTCCGGGAA 58.441 50.000 12.67 12.67 0.00 3.97
370 371 1.479323 CTTGGACGAGTAATTCCGGGA 59.521 52.381 0.00 0.00 0.00 5.14
371 372 1.479323 TCTTGGACGAGTAATTCCGGG 59.521 52.381 0.00 0.00 0.00 5.73
372 373 2.953466 TCTTGGACGAGTAATTCCGG 57.047 50.000 0.00 0.00 0.00 5.14
373 374 4.868171 TCATTTCTTGGACGAGTAATTCCG 59.132 41.667 0.00 0.00 0.00 4.30
374 375 6.737254 TTCATTTCTTGGACGAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
375 376 7.752695 ACATTCATTTCTTGGACGAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
376 377 7.687941 ACATTCATTTCTTGGACGAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
377 378 8.964476 ATACATTCATTTCTTGGACGAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
378 379 8.258007 AGATACATTCATTTCTTGGACGAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
379 380 7.782049 AGATACATTCATTTCTTGGACGAGTA 58.218 34.615 0.00 0.00 0.00 2.59
380 381 6.644347 AGATACATTCATTTCTTGGACGAGT 58.356 36.000 0.00 0.00 0.00 4.18
381 382 8.138074 TCTAGATACATTCATTTCTTGGACGAG 58.862 37.037 0.00 0.00 0.00 4.18
382 383 8.007405 TCTAGATACATTCATTTCTTGGACGA 57.993 34.615 0.00 0.00 0.00 4.20
383 384 8.706936 CATCTAGATACATTCATTTCTTGGACG 58.293 37.037 4.54 0.00 0.00 4.79
384 385 9.553064 ACATCTAGATACATTCATTTCTTGGAC 57.447 33.333 4.54 0.00 0.00 4.02
414 415 9.733556 ACACAAAATGGATGTATCTACAACTAA 57.266 29.630 0.00 0.00 39.99 2.24
415 416 9.161629 CACACAAAATGGATGTATCTACAACTA 57.838 33.333 0.00 0.00 39.99 2.24
416 417 7.882791 TCACACAAAATGGATGTATCTACAACT 59.117 33.333 0.00 0.00 39.99 3.16
417 418 7.962918 GTCACACAAAATGGATGTATCTACAAC 59.037 37.037 0.00 0.00 39.99 3.32
418 419 7.663493 TGTCACACAAAATGGATGTATCTACAA 59.337 33.333 0.00 0.00 39.99 2.41
419 420 7.164803 TGTCACACAAAATGGATGTATCTACA 58.835 34.615 0.00 0.00 40.98 2.74
420 421 7.609760 TGTCACACAAAATGGATGTATCTAC 57.390 36.000 0.00 0.00 0.00 2.59
421 422 7.882791 ACTTGTCACACAAAATGGATGTATCTA 59.117 33.333 0.00 0.00 37.69 1.98
422 423 6.716628 ACTTGTCACACAAAATGGATGTATCT 59.283 34.615 0.00 0.00 37.69 1.98
423 424 6.913170 ACTTGTCACACAAAATGGATGTATC 58.087 36.000 0.00 0.00 37.69 2.24
424 425 6.899393 ACTTGTCACACAAAATGGATGTAT 57.101 33.333 0.00 0.00 37.69 2.29
425 426 7.809546 TTACTTGTCACACAAAATGGATGTA 57.190 32.000 0.00 0.00 37.69 2.29
426 427 6.707440 TTACTTGTCACACAAAATGGATGT 57.293 33.333 0.00 0.00 37.69 3.06
427 428 7.329226 GGAATTACTTGTCACACAAAATGGATG 59.671 37.037 0.00 0.00 37.69 3.51
428 429 7.378181 GGAATTACTTGTCACACAAAATGGAT 58.622 34.615 0.00 0.00 37.69 3.41
429 430 6.514212 CGGAATTACTTGTCACACAAAATGGA 60.514 38.462 0.00 0.00 37.69 3.41
430 431 5.629020 CGGAATTACTTGTCACACAAAATGG 59.371 40.000 0.00 0.00 37.69 3.16
431 432 6.434596 TCGGAATTACTTGTCACACAAAATG 58.565 36.000 0.00 0.00 37.69 2.32
432 433 6.627395 TCGGAATTACTTGTCACACAAAAT 57.373 33.333 0.00 0.00 37.69 1.82
433 434 6.259638 GTTCGGAATTACTTGTCACACAAAA 58.740 36.000 0.00 0.00 37.69 2.44
434 435 5.502706 CGTTCGGAATTACTTGTCACACAAA 60.503 40.000 0.00 0.00 37.69 2.83
435 436 4.025563 CGTTCGGAATTACTTGTCACACAA 60.026 41.667 0.00 0.00 36.54 3.33
436 437 3.491639 CGTTCGGAATTACTTGTCACACA 59.508 43.478 0.00 0.00 0.00 3.72
437 438 3.120786 CCGTTCGGAATTACTTGTCACAC 60.121 47.826 5.19 0.00 0.00 3.82
438 439 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
439 440 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
440 441 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
441 442 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
442 443 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
443 444 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
444 445 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
445 446 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
446 447 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
447 448 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
448 449 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
449 450 1.856629 TTACTCCCTCCGTTCGGAAT 58.143 50.000 14.79 2.09 33.41 3.01
450 451 1.856629 ATTACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.04 33.41 4.30
451 452 2.173356 TCTATTACTCCCTCCGTTCGGA 59.827 50.000 13.34 13.34 0.00 4.55
452 453 2.579873 TCTATTACTCCCTCCGTTCGG 58.420 52.381 4.74 4.74 0.00 4.30
453 454 7.621428 TTATATCTATTACTCCCTCCGTTCG 57.379 40.000 0.00 0.00 0.00 3.95
469 470 9.332502 TGCTTTGCTTCGGTTTATTTATATCTA 57.667 29.630 0.00 0.00 0.00 1.98
470 471 8.220755 TGCTTTGCTTCGGTTTATTTATATCT 57.779 30.769 0.00 0.00 0.00 1.98
471 472 9.118236 GATGCTTTGCTTCGGTTTATTTATATC 57.882 33.333 0.00 0.00 0.00 1.63
472 473 8.850156 AGATGCTTTGCTTCGGTTTATTTATAT 58.150 29.630 0.00 0.00 37.70 0.86
476 477 5.048083 TCAGATGCTTTGCTTCGGTTTATTT 60.048 36.000 0.00 0.00 37.70 1.40
493 494 5.796424 AATGGGGTTCATAATTCAGATGC 57.204 39.130 0.00 0.00 34.44 3.91
504 505 3.578282 GGAACACTGAAAATGGGGTTCAT 59.422 43.478 9.70 0.00 37.08 2.57
512 513 6.032094 GCATGTATCTGGAACACTGAAAATG 58.968 40.000 0.00 0.00 0.00 2.32
515 516 4.455533 GTGCATGTATCTGGAACACTGAAA 59.544 41.667 0.00 0.00 0.00 2.69
516 517 4.002982 GTGCATGTATCTGGAACACTGAA 58.997 43.478 0.00 0.00 0.00 3.02
517 518 3.599343 GTGCATGTATCTGGAACACTGA 58.401 45.455 0.00 0.00 0.00 3.41
518 519 2.679837 GGTGCATGTATCTGGAACACTG 59.320 50.000 0.00 0.00 0.00 3.66
519 520 2.573462 AGGTGCATGTATCTGGAACACT 59.427 45.455 0.00 0.00 0.00 3.55
520 521 2.991250 AGGTGCATGTATCTGGAACAC 58.009 47.619 0.00 0.00 0.00 3.32
521 522 4.655649 AGATAGGTGCATGTATCTGGAACA 59.344 41.667 16.19 0.00 35.16 3.18
522 523 5.220710 AGATAGGTGCATGTATCTGGAAC 57.779 43.478 16.19 0.00 35.16 3.62
550 551 6.417635 CAGAGCTTTTTCTAAATCAAAACGCA 59.582 34.615 8.50 0.00 39.33 5.24
551 552 6.636850 TCAGAGCTTTTTCTAAATCAAAACGC 59.363 34.615 0.00 0.00 37.94 4.84
565 566 3.810386 GTCTCGTTCCTTCAGAGCTTTTT 59.190 43.478 0.00 0.00 32.42 1.94
567 568 2.365617 TGTCTCGTTCCTTCAGAGCTTT 59.634 45.455 0.00 0.00 32.42 3.51
589 590 3.054802 AGGAAGATGATGTGTCCTTGGAC 60.055 47.826 12.54 12.54 37.17 4.02
590 591 3.054875 CAGGAAGATGATGTGTCCTTGGA 60.055 47.826 0.00 0.00 38.48 3.53
591 592 3.276857 CAGGAAGATGATGTGTCCTTGG 58.723 50.000 0.00 0.00 38.48 3.61
592 593 3.937706 GACAGGAAGATGATGTGTCCTTG 59.062 47.826 0.00 0.00 38.48 3.61
593 594 4.213564 GACAGGAAGATGATGTGTCCTT 57.786 45.455 0.00 0.00 38.48 3.36
594 595 3.902881 GACAGGAAGATGATGTGTCCT 57.097 47.619 0.00 0.00 41.30 3.85
616 617 0.179184 GAGCAGTTCGAGAGTCCGAC 60.179 60.000 3.59 0.00 38.39 4.79
624 625 2.796383 CGGTATTCCTGAGCAGTTCGAG 60.796 54.545 0.00 0.00 0.00 4.04
627 628 2.674796 ACGGTATTCCTGAGCAGTTC 57.325 50.000 0.00 0.00 0.00 3.01
632 633 4.644103 TGTAACTACGGTATTCCTGAGC 57.356 45.455 0.00 0.00 0.00 4.26
685 704 1.078848 GTCGCACAGGGATTGAGCT 60.079 57.895 0.00 0.00 40.70 4.09
745 764 1.464608 CAACCATCTGTGCGTCGAATT 59.535 47.619 0.00 0.00 0.00 2.17
754 773 2.154462 GGGAGTTGACAACCATCTGTG 58.846 52.381 14.72 0.00 0.00 3.66
755 774 1.270839 CGGGAGTTGACAACCATCTGT 60.271 52.381 14.72 0.00 0.00 3.41
786 805 3.960102 TCCTCTTTTTGACAAACCTGCAT 59.040 39.130 0.00 0.00 0.00 3.96
827 846 1.293498 GCTCGGCTGACTTTGAGGA 59.707 57.895 0.00 0.00 0.00 3.71
831 850 2.357517 ACCGCTCGGCTGACTTTG 60.358 61.111 8.41 0.00 39.32 2.77
905 924 2.914097 GTGCCTGTGCCTTTGCCT 60.914 61.111 0.00 0.00 36.33 4.75
911 930 1.079127 GTCATACGTGCCTGTGCCT 60.079 57.895 0.00 0.00 36.33 4.75
912 931 2.106683 GGTCATACGTGCCTGTGCC 61.107 63.158 0.00 0.00 36.33 5.01
913 932 1.361668 CTGGTCATACGTGCCTGTGC 61.362 60.000 0.00 0.00 38.26 4.57
914 933 0.246360 TCTGGTCATACGTGCCTGTG 59.754 55.000 0.00 0.00 0.00 3.66
915 934 1.137086 GATCTGGTCATACGTGCCTGT 59.863 52.381 0.00 0.00 0.00 4.00
916 935 1.136891 TGATCTGGTCATACGTGCCTG 59.863 52.381 0.00 0.00 0.00 4.85
917 936 1.410517 CTGATCTGGTCATACGTGCCT 59.589 52.381 0.00 0.00 35.97 4.75
980 1009 4.094887 CCATACTGGTTCGATGTTTCCAAG 59.905 45.833 0.00 0.00 31.35 3.61
987 1016 0.908910 TGCCCATACTGGTTCGATGT 59.091 50.000 0.00 0.00 35.17 3.06
990 1019 0.180171 CCATGCCCATACTGGTTCGA 59.820 55.000 0.00 0.00 35.17 3.71
1275 1313 3.303135 AGGTTGAGCGTCCGCAGA 61.303 61.111 14.70 0.00 44.88 4.26
1347 1385 0.889638 TCAAGTCGAGTCTCCGCAGT 60.890 55.000 0.00 0.00 0.00 4.40
1494 1532 2.088423 CTCAGCGAGACTACTTCCAGT 58.912 52.381 0.00 0.00 0.00 4.00
2115 2162 2.761208 ACTCCCAAAGATCCTAGTGTCG 59.239 50.000 0.00 0.00 0.00 4.35
2500 2552 4.022849 GCTACCAACATCATTAGGAATGGC 60.023 45.833 0.00 0.00 39.38 4.40
2599 2651 5.505173 AATGATAGCCATTGCAACACTAC 57.495 39.130 0.00 0.57 43.46 2.73
2918 2978 3.915437 GTGTACCTCCACACAAATTGG 57.085 47.619 0.00 0.00 46.55 3.16
2966 3026 3.799432 TGTTCTTGCTTAAGGGGCTTA 57.201 42.857 4.29 0.00 0.00 3.09
3201 3264 3.777522 CTCCATAACTTCCTCTCCCAAGT 59.222 47.826 0.00 0.00 34.16 3.16
3263 3326 3.421844 AGATTAAACACCTTGACAGCCC 58.578 45.455 0.00 0.00 0.00 5.19
3345 3408 1.774639 TCTTAACGAGACAACGGTGC 58.225 50.000 0.00 0.00 37.61 5.01
3393 3456 1.268079 GCCTTGAACTCTTGACCTTGC 59.732 52.381 0.00 0.00 0.00 4.01
3513 3576 6.483307 CCACAATATCGACACCAATATCAAGT 59.517 38.462 0.00 0.00 0.00 3.16
4192 7118 2.435372 TGCTCCATGTTCCCCAATAC 57.565 50.000 0.00 0.00 0.00 1.89
4335 7261 5.344665 ACGCGGATTTGACATTTTACATTTG 59.655 36.000 12.47 0.00 0.00 2.32
4356 7282 5.907391 GCCATAATGTTATTGTAGAACACGC 59.093 40.000 0.00 0.00 39.51 5.34
4357 7283 7.010697 TGCCATAATGTTATTGTAGAACACG 57.989 36.000 0.00 0.00 39.51 4.49
4371 7297 8.694540 TGCTGAAAATTACTATTGCCATAATGT 58.305 29.630 0.00 0.00 0.00 2.71
4519 8037 3.307762 GCCAGTCACTTCCTTCCTAACAT 60.308 47.826 0.00 0.00 0.00 2.71
4569 8087 0.822164 ATTCAGGGCATTTGAGCAGC 59.178 50.000 0.00 0.00 35.83 5.25
4636 8154 6.823689 GCACTCAGAAGAAGGAATTATGGTTA 59.176 38.462 0.00 0.00 0.00 2.85
5015 8934 1.007963 ACGGACTTTCTGGGGGAGATA 59.992 52.381 0.00 0.00 0.00 1.98
5079 8998 2.349275 ACCGTTTATGCGTACATTTCCG 59.651 45.455 0.00 0.00 37.74 4.30
5145 9064 0.328450 AAGGGGCATGGTGGAGGATA 60.328 55.000 0.00 0.00 0.00 2.59
5175 9095 7.901029 AGGTGACTTATCCTATATGACACATG 58.099 38.462 13.21 0.00 37.44 3.21
5180 9100 9.429359 CAAATGAGGTGACTTATCCTATATGAC 57.571 37.037 0.00 0.00 44.43 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.