Multiple sequence alignment - TraesCS3B01G073500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G073500 chr3B 100.000 4783 0 0 1 4783 44258856 44263638 0.000000e+00 8833.0
1 TraesCS3B01G073500 chr3B 100.000 40 0 0 1707 1746 132005134 132005095 1.850000e-09 75.0
2 TraesCS3B01G073500 chr3A 86.463 1736 158 31 1 1704 36471522 36473212 0.000000e+00 1832.0
3 TraesCS3B01G073500 chr3A 87.645 1465 100 27 2540 3997 36473845 36475235 0.000000e+00 1628.0
4 TraesCS3B01G073500 chr3A 86.278 634 55 14 1838 2452 36473210 36473830 0.000000e+00 660.0
5 TraesCS3B01G073500 chr3A 92.308 91 7 0 4005 4095 36475430 36475520 3.880000e-26 130.0
6 TraesCS3B01G073500 chr3D 89.283 1409 99 34 2488 3871 26444934 26446315 0.000000e+00 1718.0
7 TraesCS3B01G073500 chr3D 86.624 1241 72 34 503 1704 26443118 26444303 0.000000e+00 1286.0
8 TraesCS3B01G073500 chr3D 90.205 633 34 11 1837 2449 26444300 26444924 0.000000e+00 800.0
9 TraesCS3B01G073500 chr4B 96.807 689 21 1 4095 4783 620019771 620019084 0.000000e+00 1149.0
10 TraesCS3B01G073500 chr4B 95.349 688 29 2 4096 4783 546184475 546183791 0.000000e+00 1090.0
11 TraesCS3B01G073500 chr4B 94.957 694 29 1 4093 4780 649411811 649412504 0.000000e+00 1083.0
12 TraesCS3B01G073500 chr4B 91.912 136 9 2 1707 1840 187431751 187431886 6.320000e-44 189.0
13 TraesCS3B01G073500 chr2B 96.889 675 21 0 4103 4777 47993463 47992789 0.000000e+00 1131.0
14 TraesCS3B01G073500 chr2B 94.661 693 30 3 4096 4783 219011683 219010993 0.000000e+00 1068.0
15 TraesCS3B01G073500 chr5B 95.259 696 27 1 4094 4783 7526990 7526295 0.000000e+00 1098.0
16 TraesCS3B01G073500 chr5B 94.622 688 34 1 4096 4783 325705679 325704995 0.000000e+00 1062.0
17 TraesCS3B01G073500 chr1B 95.058 688 29 2 4096 4783 124661030 124660348 0.000000e+00 1077.0
18 TraesCS3B01G073500 chr1B 94.656 131 6 1 1708 1837 641138312 641138442 8.120000e-48 202.0
19 TraesCS3B01G073500 chr6B 94.669 694 30 2 4096 4783 492685782 492685090 0.000000e+00 1070.0
20 TraesCS3B01G073500 chr7D 97.727 132 2 1 1707 1837 479736795 479736926 4.820000e-55 226.0
21 TraesCS3B01G073500 chr7D 90.840 131 12 0 1707 1837 614306934 614306804 4.920000e-40 176.0
22 TraesCS3B01G073500 chr2D 94.928 138 4 3 1707 1842 274925043 274924907 3.750000e-51 213.0
23 TraesCS3B01G073500 chr5D 94.118 136 6 2 1707 1841 162417427 162417293 6.270000e-49 206.0
24 TraesCS3B01G073500 chr5D 95.238 42 2 0 208 249 520726717 520726676 3.090000e-07 67.6
25 TraesCS3B01G073500 chr1D 92.857 140 2 3 1707 1838 398871466 398871327 3.780000e-46 196.0
26 TraesCS3B01G073500 chr1D 99.048 105 1 0 1733 1837 360475340 360475236 6.320000e-44 189.0
27 TraesCS3B01G073500 chrUn 92.424 132 9 1 1707 1837 103940060 103940191 2.270000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G073500 chr3B 44258856 44263638 4782 False 8833.0 8833 100.0000 1 4783 1 chr3B.!!$F1 4782
1 TraesCS3B01G073500 chr3A 36471522 36475520 3998 False 1062.5 1832 88.1735 1 4095 4 chr3A.!!$F1 4094
2 TraesCS3B01G073500 chr3D 26443118 26446315 3197 False 1268.0 1718 88.7040 503 3871 3 chr3D.!!$F1 3368
3 TraesCS3B01G073500 chr4B 620019084 620019771 687 True 1149.0 1149 96.8070 4095 4783 1 chr4B.!!$R2 688
4 TraesCS3B01G073500 chr4B 546183791 546184475 684 True 1090.0 1090 95.3490 4096 4783 1 chr4B.!!$R1 687
5 TraesCS3B01G073500 chr4B 649411811 649412504 693 False 1083.0 1083 94.9570 4093 4780 1 chr4B.!!$F2 687
6 TraesCS3B01G073500 chr2B 47992789 47993463 674 True 1131.0 1131 96.8890 4103 4777 1 chr2B.!!$R1 674
7 TraesCS3B01G073500 chr2B 219010993 219011683 690 True 1068.0 1068 94.6610 4096 4783 1 chr2B.!!$R2 687
8 TraesCS3B01G073500 chr5B 7526295 7526990 695 True 1098.0 1098 95.2590 4094 4783 1 chr5B.!!$R1 689
9 TraesCS3B01G073500 chr5B 325704995 325705679 684 True 1062.0 1062 94.6220 4096 4783 1 chr5B.!!$R2 687
10 TraesCS3B01G073500 chr1B 124660348 124661030 682 True 1077.0 1077 95.0580 4096 4783 1 chr1B.!!$R1 687
11 TraesCS3B01G073500 chr6B 492685090 492685782 692 True 1070.0 1070 94.6690 4096 4783 1 chr6B.!!$R1 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.736325 CACGTTCCCTAGTTCCGCTG 60.736 60.0 0.00 0.00 0.00 5.18 F
1207 1257 0.239347 CGGTTGCAGCCAAGAAGAAG 59.761 55.0 20.42 0.00 0.00 2.85 F
1780 1848 0.035725 CCCGTTTGGTTCCTAGGGAC 60.036 60.0 12.35 12.35 41.26 4.46 F
2462 2578 0.040514 CTATGAGCGAGTCAGAGGCG 60.041 60.0 2.72 0.00 40.34 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 1829 0.035725 GTCCCTAGGAACCAAACGGG 60.036 60.0 11.48 0.00 44.81 5.28 R
2822 2940 0.029967 CTTGCTCGCAGATCTCGCTA 59.970 55.0 13.06 4.19 33.89 4.26 R
2980 3104 0.393132 TTTGGCATCGTAATCCGGCA 60.393 50.0 0.00 0.00 37.11 5.69 R
4101 4432 0.322816 TGCTGCTAGCCTTTTCCCTG 60.323 55.0 13.29 0.00 41.51 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.227823 CTTCTTGTGGGTGTGCCGA 60.228 57.895 0.00 0.00 34.97 5.54
36 37 2.517598 CCGATTGGTTATCTCGGCG 58.482 57.895 0.00 0.00 44.65 6.46
42 43 1.227176 GGTTATCTCGGCGACCCAC 60.227 63.158 4.99 0.00 0.00 4.61
59 60 0.736325 CACGTTCCCTAGTTCCGCTG 60.736 60.000 0.00 0.00 0.00 5.18
66 67 3.932580 CTAGTTCCGCTGCCGCACA 62.933 63.158 0.00 0.00 35.30 4.57
75 76 2.433491 TGCCGCACACCGATGTAC 60.433 61.111 0.00 0.00 36.72 2.90
117 118 3.072468 TCGGGGAAGCCGTGTAGG 61.072 66.667 0.00 0.00 44.97 3.18
143 144 1.431036 GCAAGGAAGAAGATGCGCC 59.569 57.895 4.18 0.00 0.00 6.53
168 169 3.121019 CGGGAGGAAGAGGCTACG 58.879 66.667 0.00 0.00 0.00 3.51
169 170 2.816012 GGGAGGAAGAGGCTACGC 59.184 66.667 0.00 0.00 0.00 4.42
203 204 1.501582 GAAGTACCTCCATGGCCTCT 58.498 55.000 6.96 0.00 40.22 3.69
204 205 1.139853 GAAGTACCTCCATGGCCTCTG 59.860 57.143 6.96 0.93 40.22 3.35
294 300 4.767255 GGCGCCAGAGTGAGTGGG 62.767 72.222 24.80 0.00 35.39 4.61
295 301 4.008933 GCGCCAGAGTGAGTGGGT 62.009 66.667 0.00 0.00 35.39 4.51
296 302 2.047844 CGCCAGAGTGAGTGGGTG 60.048 66.667 0.00 0.00 35.39 4.61
297 303 2.359230 GCCAGAGTGAGTGGGTGC 60.359 66.667 0.00 0.00 35.39 5.01
298 304 3.150949 CCAGAGTGAGTGGGTGCA 58.849 61.111 0.00 0.00 0.00 4.57
299 305 1.004080 CCAGAGTGAGTGGGTGCAG 60.004 63.158 0.00 0.00 0.00 4.41
300 306 1.004080 CAGAGTGAGTGGGTGCAGG 60.004 63.158 0.00 0.00 0.00 4.85
301 307 2.359230 GAGTGAGTGGGTGCAGGC 60.359 66.667 0.00 0.00 0.00 4.85
302 308 4.320456 AGTGAGTGGGTGCAGGCG 62.320 66.667 0.00 0.00 0.00 5.52
303 309 4.314440 GTGAGTGGGTGCAGGCGA 62.314 66.667 0.00 0.00 0.00 5.54
304 310 4.007644 TGAGTGGGTGCAGGCGAG 62.008 66.667 0.00 0.00 0.00 5.03
347 353 3.077556 GGGCAGCGGAGAGGAGAA 61.078 66.667 0.00 0.00 0.00 2.87
357 363 2.106511 CGGAGAGGAGAAGAGAGGAGAT 59.893 54.545 0.00 0.00 0.00 2.75
367 373 5.743117 AGAAGAGAGGAGATGTTGGATTTG 58.257 41.667 0.00 0.00 0.00 2.32
370 376 6.821616 AGAGAGGAGATGTTGGATTTGTAT 57.178 37.500 0.00 0.00 0.00 2.29
374 380 6.069440 AGAGGAGATGTTGGATTTGTATTCCA 60.069 38.462 0.00 0.00 41.50 3.53
375 381 6.676558 AGGAGATGTTGGATTTGTATTCCAT 58.323 36.000 0.00 0.00 42.69 3.41
379 385 7.121382 AGATGTTGGATTTGTATTCCATGACT 58.879 34.615 0.00 0.00 42.69 3.41
523 530 8.293867 TCTTCTTCTTCTTCTTCTTCTCTAACG 58.706 37.037 0.00 0.00 0.00 3.18
528 535 3.510360 TCTTCTTCTTCTCTAACGGGTGG 59.490 47.826 0.00 0.00 0.00 4.61
561 568 4.657436 AGCTCTTTAACTAGTGATCCCG 57.343 45.455 0.00 0.00 0.00 5.14
667 685 5.003804 TGGTAGGAATCAAAGAGAAAGCAC 58.996 41.667 0.00 0.00 0.00 4.40
675 693 8.084684 GGAATCAAAGAGAAAGCACAATACTTT 58.915 33.333 0.00 0.00 39.99 2.66
712 730 1.476891 GCAGAGTAGACGACCCATGAA 59.523 52.381 0.00 0.00 0.00 2.57
775 793 5.429762 AGTGATCTCTAACCCCAATCATTCA 59.570 40.000 0.00 0.00 0.00 2.57
780 798 6.122277 TCTCTAACCCCAATCATTCAATCAC 58.878 40.000 0.00 0.00 0.00 3.06
790 811 6.092944 CCAATCATTCAATCACACCCAATTTG 59.907 38.462 0.00 0.00 0.00 2.32
861 882 2.747855 CCTTCTCTTGGCCACCGC 60.748 66.667 3.88 0.00 0.00 5.68
862 883 3.121030 CTTCTCTTGGCCACCGCG 61.121 66.667 3.88 0.00 35.02 6.46
931 952 1.078848 CCACTTTCCTCTGCCTCCG 60.079 63.158 0.00 0.00 0.00 4.63
952 973 1.747145 CTCCAGCTCATCGGCATCT 59.253 57.895 0.00 0.00 34.17 2.90
961 982 1.410517 TCATCGGCATCTTCCTCTGTC 59.589 52.381 0.00 0.00 0.00 3.51
983 1009 3.788672 GGATTGATCCACGGAGCTT 57.211 52.632 5.14 0.00 46.38 3.74
1012 1062 3.950794 TTGGTGATGGTCCGCGAGC 62.951 63.158 8.23 4.01 0.00 5.03
1014 1064 2.583593 GTGATGGTCCGCGAGCTC 60.584 66.667 8.23 2.73 0.00 4.09
1179 1229 2.695597 CTCTGCCCCTCCTCCTCT 59.304 66.667 0.00 0.00 0.00 3.69
1180 1230 1.761667 CTCTGCCCCTCCTCCTCTG 60.762 68.421 0.00 0.00 0.00 3.35
1181 1231 2.767496 CTGCCCCTCCTCCTCTGG 60.767 72.222 0.00 0.00 0.00 3.86
1184 1234 4.465446 CCCCTCCTCCTCTGGCGA 62.465 72.222 0.00 0.00 0.00 5.54
1207 1257 0.239347 CGGTTGCAGCCAAGAAGAAG 59.761 55.000 20.42 0.00 0.00 2.85
1209 1259 1.268079 GGTTGCAGCCAAGAAGAAGAC 59.732 52.381 15.64 0.00 0.00 3.01
1312 1362 1.202359 GCTCTCCTTCTGATCACGTCC 60.202 57.143 0.00 0.00 0.00 4.79
1332 1382 2.936498 CCACACAGGGACGAAATATGAC 59.064 50.000 0.00 0.00 0.00 3.06
1342 1392 7.875041 CAGGGACGAAATATGACTCAGATAAAT 59.125 37.037 0.00 0.00 0.00 1.40
1431 1482 1.552337 TGGTCTGTCTCTGCAGGAATC 59.448 52.381 15.13 3.17 37.12 2.52
1452 1503 8.609176 GGAATCGCTAGAGAATACTAGTATCAG 58.391 40.741 15.72 9.18 41.10 2.90
1502 1560 6.183360 TGCATAGCAACATGAATTTCGGTATT 60.183 34.615 0.00 0.00 34.76 1.89
1521 1579 6.237755 CGGTATTTTTATCTGGTCGAGTTGTC 60.238 42.308 0.00 0.00 0.00 3.18
1529 1587 2.097036 TGGTCGAGTTGTCGGTGATAT 58.903 47.619 0.00 0.00 46.80 1.63
1530 1588 3.281158 TGGTCGAGTTGTCGGTGATATA 58.719 45.455 0.00 0.00 46.80 0.86
1531 1589 3.065786 TGGTCGAGTTGTCGGTGATATAC 59.934 47.826 0.00 0.00 46.80 1.47
1552 1612 2.019249 CACAAGATGATTGCGGTGGAT 58.981 47.619 0.00 0.00 0.00 3.41
1553 1613 2.019249 ACAAGATGATTGCGGTGGATG 58.981 47.619 0.00 0.00 0.00 3.51
1565 1625 2.846371 GTGGATGCAGACACACCTC 58.154 57.895 16.15 0.00 37.54 3.85
1605 1665 2.309528 ACGAGTTCAACAAGACAGCA 57.690 45.000 0.00 0.00 0.00 4.41
1606 1666 2.627945 ACGAGTTCAACAAGACAGCAA 58.372 42.857 0.00 0.00 0.00 3.91
1607 1667 3.206150 ACGAGTTCAACAAGACAGCAAT 58.794 40.909 0.00 0.00 0.00 3.56
1633 1693 8.997621 AATGCATCCATTTGCTAAATATGATC 57.002 30.769 0.00 0.00 43.18 2.92
1635 1695 7.599171 TGCATCCATTTGCTAAATATGATCTG 58.401 34.615 0.00 0.00 43.18 2.90
1656 1718 2.680221 GCTGATGGACTGCATGAGAACT 60.680 50.000 1.09 0.00 41.89 3.01
1660 1722 2.771089 TGGACTGCATGAGAACTGTTC 58.229 47.619 12.54 12.54 0.00 3.18
1663 1725 2.740981 GACTGCATGAGAACTGTTCAGG 59.259 50.000 21.50 6.55 0.00 3.86
1671 1733 3.244215 TGAGAACTGTTCAGGGATGTCAC 60.244 47.826 21.50 2.22 0.00 3.67
1675 1737 2.975489 ACTGTTCAGGGATGTCACTCTT 59.025 45.455 4.82 0.00 0.00 2.85
1676 1738 3.244353 ACTGTTCAGGGATGTCACTCTTG 60.244 47.826 4.82 0.00 0.00 3.02
1700 1768 4.648307 GGAATCAGAAGATGGGAATGCTTT 59.352 41.667 0.00 0.00 33.90 3.51
1701 1769 5.128335 GGAATCAGAAGATGGGAATGCTTTT 59.872 40.000 0.00 0.00 33.90 2.27
1702 1770 5.848833 ATCAGAAGATGGGAATGCTTTTC 57.151 39.130 0.00 0.00 31.91 2.29
1703 1771 4.665451 TCAGAAGATGGGAATGCTTTTCA 58.335 39.130 3.03 0.00 0.00 2.69
1704 1772 4.460382 TCAGAAGATGGGAATGCTTTTCAC 59.540 41.667 3.03 0.00 0.00 3.18
1705 1773 4.219070 CAGAAGATGGGAATGCTTTTCACA 59.781 41.667 7.26 7.26 36.14 3.58
1706 1774 4.461781 AGAAGATGGGAATGCTTTTCACAG 59.538 41.667 10.08 0.00 35.03 3.66
1707 1775 3.094572 AGATGGGAATGCTTTTCACAGG 58.905 45.455 10.08 0.00 35.03 4.00
1708 1776 1.631405 TGGGAATGCTTTTCACAGGG 58.369 50.000 1.38 0.00 0.00 4.45
1709 1777 1.133199 TGGGAATGCTTTTCACAGGGT 60.133 47.619 1.38 0.00 0.00 4.34
1710 1778 1.273327 GGGAATGCTTTTCACAGGGTG 59.727 52.381 3.03 0.00 34.45 4.61
1711 1779 1.963515 GGAATGCTTTTCACAGGGTGT 59.036 47.619 0.00 0.00 34.79 4.16
1712 1780 2.365293 GGAATGCTTTTCACAGGGTGTT 59.635 45.455 0.00 0.00 34.79 3.32
1713 1781 3.181466 GGAATGCTTTTCACAGGGTGTTT 60.181 43.478 0.00 0.00 34.79 2.83
1714 1782 2.957491 TGCTTTTCACAGGGTGTTTG 57.043 45.000 0.00 0.00 34.79 2.93
1715 1783 1.480137 TGCTTTTCACAGGGTGTTTGG 59.520 47.619 0.00 0.00 34.79 3.28
1716 1784 1.480545 GCTTTTCACAGGGTGTTTGGT 59.519 47.619 0.00 0.00 34.79 3.67
1717 1785 2.093711 GCTTTTCACAGGGTGTTTGGTT 60.094 45.455 0.00 0.00 34.79 3.67
1718 1786 3.780902 CTTTTCACAGGGTGTTTGGTTC 58.219 45.455 0.00 0.00 34.79 3.62
1719 1787 2.516227 TTCACAGGGTGTTTGGTTCA 57.484 45.000 0.00 0.00 34.79 3.18
1720 1788 2.051334 TCACAGGGTGTTTGGTTCAG 57.949 50.000 0.00 0.00 34.79 3.02
1721 1789 1.562008 TCACAGGGTGTTTGGTTCAGA 59.438 47.619 0.00 0.00 34.79 3.27
1722 1790 2.025793 TCACAGGGTGTTTGGTTCAGAA 60.026 45.455 0.00 0.00 34.79 3.02
1723 1791 2.358898 CACAGGGTGTTTGGTTCAGAAG 59.641 50.000 0.00 0.00 0.00 2.85
1724 1792 2.025321 ACAGGGTGTTTGGTTCAGAAGT 60.025 45.455 0.00 0.00 0.00 3.01
1725 1793 2.618709 CAGGGTGTTTGGTTCAGAAGTC 59.381 50.000 0.00 0.00 0.00 3.01
1726 1794 1.954382 GGGTGTTTGGTTCAGAAGTCC 59.046 52.381 0.00 0.00 0.00 3.85
1727 1795 2.422945 GGGTGTTTGGTTCAGAAGTCCT 60.423 50.000 0.00 0.00 0.00 3.85
1728 1796 3.181448 GGGTGTTTGGTTCAGAAGTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
1729 1797 4.065789 GGTGTTTGGTTCAGAAGTCCTAG 58.934 47.826 0.00 0.00 0.00 3.02
1730 1798 4.065789 GTGTTTGGTTCAGAAGTCCTAGG 58.934 47.826 0.82 0.82 0.00 3.02
1731 1799 3.971305 TGTTTGGTTCAGAAGTCCTAGGA 59.029 43.478 7.62 7.62 0.00 2.94
1732 1800 4.202326 TGTTTGGTTCAGAAGTCCTAGGAC 60.202 45.833 31.29 31.29 44.86 3.85
1769 1837 1.699730 AAAAAGTCCCTCCCGTTTGG 58.300 50.000 0.00 0.00 0.00 3.28
1770 1838 0.554305 AAAAGTCCCTCCCGTTTGGT 59.446 50.000 0.00 0.00 34.77 3.67
1771 1839 0.554305 AAAGTCCCTCCCGTTTGGTT 59.446 50.000 0.00 0.00 34.77 3.67
1772 1840 0.109913 AAGTCCCTCCCGTTTGGTTC 59.890 55.000 0.00 0.00 34.77 3.62
1773 1841 1.303074 GTCCCTCCCGTTTGGTTCC 60.303 63.158 0.00 0.00 34.77 3.62
1774 1842 1.462627 TCCCTCCCGTTTGGTTCCT 60.463 57.895 0.00 0.00 34.77 3.36
1775 1843 0.178897 TCCCTCCCGTTTGGTTCCTA 60.179 55.000 0.00 0.00 34.77 2.94
1776 1844 0.252197 CCCTCCCGTTTGGTTCCTAG 59.748 60.000 0.00 0.00 34.77 3.02
1777 1845 0.252197 CCTCCCGTTTGGTTCCTAGG 59.748 60.000 0.82 0.82 34.77 3.02
1778 1846 0.252197 CTCCCGTTTGGTTCCTAGGG 59.748 60.000 9.46 0.00 40.16 3.53
1779 1847 0.178897 TCCCGTTTGGTTCCTAGGGA 60.179 55.000 9.46 0.00 44.85 4.20
1780 1848 0.035725 CCCGTTTGGTTCCTAGGGAC 60.036 60.000 12.35 12.35 41.26 4.46
1781 1849 0.981943 CCGTTTGGTTCCTAGGGACT 59.018 55.000 20.08 0.00 46.37 3.85
1782 1850 1.350019 CCGTTTGGTTCCTAGGGACTT 59.650 52.381 20.08 0.00 41.75 3.01
1783 1851 2.224695 CCGTTTGGTTCCTAGGGACTTT 60.225 50.000 20.08 0.00 41.75 2.66
1784 1852 3.483421 CGTTTGGTTCCTAGGGACTTTT 58.517 45.455 20.08 0.00 41.75 2.27
1785 1853 3.887110 CGTTTGGTTCCTAGGGACTTTTT 59.113 43.478 20.08 0.00 41.75 1.94
1786 1854 5.065235 CGTTTGGTTCCTAGGGACTTTTTA 58.935 41.667 20.08 0.00 41.75 1.52
1787 1855 5.708697 CGTTTGGTTCCTAGGGACTTTTTAT 59.291 40.000 20.08 0.00 41.75 1.40
1788 1856 6.349033 CGTTTGGTTCCTAGGGACTTTTTATG 60.349 42.308 20.08 3.68 41.75 1.90
1789 1857 5.187621 TGGTTCCTAGGGACTTTTTATGG 57.812 43.478 20.08 0.00 41.75 2.74
1790 1858 4.853276 TGGTTCCTAGGGACTTTTTATGGA 59.147 41.667 20.08 0.00 41.75 3.41
1791 1859 5.191426 GGTTCCTAGGGACTTTTTATGGAC 58.809 45.833 20.08 0.00 41.75 4.02
1792 1860 5.045066 GGTTCCTAGGGACTTTTTATGGACT 60.045 44.000 20.08 0.00 41.75 3.85
1793 1861 6.482524 GTTCCTAGGGACTTTTTATGGACTT 58.517 40.000 13.55 0.00 41.75 3.01
1794 1862 6.713731 TCCTAGGGACTTTTTATGGACTTT 57.286 37.500 9.46 0.00 41.75 2.66
1795 1863 7.098845 TCCTAGGGACTTTTTATGGACTTTT 57.901 36.000 9.46 0.00 41.75 2.27
1796 1864 7.532199 TCCTAGGGACTTTTTATGGACTTTTT 58.468 34.615 9.46 0.00 41.75 1.94
1797 1865 7.668469 TCCTAGGGACTTTTTATGGACTTTTTC 59.332 37.037 9.46 0.00 41.75 2.29
1798 1866 7.670140 CCTAGGGACTTTTTATGGACTTTTTCT 59.330 37.037 0.00 0.00 41.75 2.52
1799 1867 9.734984 CTAGGGACTTTTTATGGACTTTTTCTA 57.265 33.333 0.00 0.00 41.75 2.10
1800 1868 8.637196 AGGGACTTTTTATGGACTTTTTCTAG 57.363 34.615 0.00 0.00 27.25 2.43
1801 1869 8.225416 AGGGACTTTTTATGGACTTTTTCTAGT 58.775 33.333 0.00 0.00 27.25 2.57
1802 1870 8.512956 GGGACTTTTTATGGACTTTTTCTAGTC 58.487 37.037 0.00 0.00 43.05 2.59
1803 1871 9.286170 GGACTTTTTATGGACTTTTTCTAGTCT 57.714 33.333 0.00 0.00 43.26 3.24
1807 1875 8.848474 TTTTATGGACTTTTTCTAGTCTCTGG 57.152 34.615 0.00 0.00 43.26 3.86
1808 1876 4.891992 TGGACTTTTTCTAGTCTCTGGG 57.108 45.455 0.00 0.00 43.26 4.45
1809 1877 4.489737 TGGACTTTTTCTAGTCTCTGGGA 58.510 43.478 0.00 0.00 43.26 4.37
1810 1878 4.283722 TGGACTTTTTCTAGTCTCTGGGAC 59.716 45.833 0.00 0.00 43.26 4.46
1831 1899 5.828747 GACTAAAAAGTCCCTGAACCAAAC 58.171 41.667 0.00 0.00 32.97 2.93
1832 1900 5.265989 ACTAAAAAGTCCCTGAACCAAACA 58.734 37.500 0.00 0.00 0.00 2.83
1833 1901 4.465632 AAAAAGTCCCTGAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
1834 1902 2.067365 AAGTCCCTGAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
1835 1903 0.185175 AGTCCCTGAACCAAACACCC 59.815 55.000 0.00 0.00 0.00 4.61
1894 1963 0.755327 ACCTGAACCCAGTTTGGCAC 60.755 55.000 0.00 0.00 38.74 5.01
1949 2018 3.054503 CACCTGCCAGCTCAGTGC 61.055 66.667 2.09 0.00 43.29 4.40
2110 2210 6.634805 TCAAGCTATTCTAACTCCTCACAAG 58.365 40.000 0.00 0.00 0.00 3.16
2149 2249 2.378038 TGTGCAGCAGTTCCTTTCTTT 58.622 42.857 0.00 0.00 0.00 2.52
2150 2250 2.760092 TGTGCAGCAGTTCCTTTCTTTT 59.240 40.909 0.00 0.00 0.00 2.27
2202 2302 4.151883 GGATTTTATAGCCCATCTTGCCA 58.848 43.478 0.00 0.00 0.00 4.92
2230 2333 4.498520 CGTCTGCCGACCGATGCT 62.499 66.667 2.40 0.00 39.56 3.79
2231 2334 2.887568 GTCTGCCGACCGATGCTG 60.888 66.667 0.00 0.00 33.98 4.41
2232 2335 3.381983 TCTGCCGACCGATGCTGT 61.382 61.111 0.00 0.00 0.00 4.40
2233 2336 3.190849 CTGCCGACCGATGCTGTG 61.191 66.667 0.00 0.00 0.00 3.66
2234 2337 3.647649 CTGCCGACCGATGCTGTGA 62.648 63.158 0.00 0.00 0.00 3.58
2235 2338 2.434185 GCCGACCGATGCTGTGAA 60.434 61.111 0.00 0.00 0.00 3.18
2244 2347 1.136529 CGATGCTGTGAACTGTGAACG 60.137 52.381 0.00 0.00 0.00 3.95
2310 2419 4.207165 ACAACTCCAAGTGCAGTAAACAT 58.793 39.130 0.00 0.00 0.00 2.71
2312 2421 6.003950 ACAACTCCAAGTGCAGTAAACATAT 58.996 36.000 0.00 0.00 0.00 1.78
2355 2464 5.149977 CAAACAACAATTTGTGCGGTTTTT 58.850 33.333 17.48 2.52 45.69 1.94
2390 2499 2.101415 GCCTGGAAATCCTAATTGTGCC 59.899 50.000 0.00 0.00 36.82 5.01
2460 2576 3.863681 GCTATGAGCGAGTCAGAGG 57.136 57.895 10.69 0.00 43.66 3.69
2461 2577 0.318614 GCTATGAGCGAGTCAGAGGC 60.319 60.000 10.69 4.02 43.66 4.70
2462 2578 0.040514 CTATGAGCGAGTCAGAGGCG 60.041 60.000 2.72 0.00 40.34 5.52
2467 2583 4.838486 CGAGTCAGAGGCGCGACC 62.838 72.222 9.25 10.36 39.61 4.79
2483 2599 3.599584 CCTCGTAGGTGAAGGCGA 58.400 61.111 0.00 0.00 0.00 5.54
2484 2600 1.888018 CCTCGTAGGTGAAGGCGAA 59.112 57.895 0.00 0.00 32.84 4.70
2485 2601 0.460311 CCTCGTAGGTGAAGGCGAAT 59.540 55.000 0.00 0.00 32.84 3.34
2486 2602 1.134788 CCTCGTAGGTGAAGGCGAATT 60.135 52.381 0.00 0.00 32.84 2.17
2509 2625 1.009829 GGTTTGACATGCGCTAGGAG 58.990 55.000 9.73 0.00 0.00 3.69
2511 2627 1.661112 GTTTGACATGCGCTAGGAGAC 59.339 52.381 9.73 0.00 0.00 3.36
2529 2645 1.619332 GACCGGTCAAGGAAGAAGTCT 59.381 52.381 29.75 0.00 34.73 3.24
2536 2652 4.561105 GTCAAGGAAGAAGTCTGACGATT 58.439 43.478 1.52 0.00 0.00 3.34
2545 2661 0.872388 GTCTGACGATTTGGCCGTTT 59.128 50.000 0.00 0.00 40.67 3.60
2550 2666 4.216687 TCTGACGATTTGGCCGTTTATTTT 59.783 37.500 0.00 0.00 40.67 1.82
2552 2668 4.918583 TGACGATTTGGCCGTTTATTTTTC 59.081 37.500 0.00 0.00 40.67 2.29
2675 2791 5.886474 GCTTTTGGCCTTTTCCTACTAGTAT 59.114 40.000 3.32 0.00 34.27 2.12
2676 2792 7.052248 GCTTTTGGCCTTTTCCTACTAGTATA 58.948 38.462 3.32 0.00 34.27 1.47
2677 2793 7.012138 GCTTTTGGCCTTTTCCTACTAGTATAC 59.988 40.741 3.32 0.00 34.27 1.47
2713 2829 5.991328 ATGTACATTAGCGAATCCAACTG 57.009 39.130 1.41 0.00 0.00 3.16
2748 2866 4.424061 TCAGCGAATGAAAATGGTCTTG 57.576 40.909 0.00 0.00 34.02 3.02
2804 2922 3.085533 GTGCTCAGGTCTAGAGTCTCAA 58.914 50.000 0.00 0.00 35.55 3.02
2822 2940 4.175489 CGCGTCGTCTCCATCGGT 62.175 66.667 0.00 0.00 0.00 4.69
2887 3011 3.872603 TGCCACCAACCTCAGCGT 61.873 61.111 0.00 0.00 0.00 5.07
2892 3016 2.266055 CCAACCTCAGCGTCCTCC 59.734 66.667 0.00 0.00 0.00 4.30
2939 3063 0.185901 AAGGCCCGTACGTATCCCTA 59.814 55.000 15.21 0.00 0.00 3.53
2980 3104 2.284699 CCTCCCGGAAGACACCCT 60.285 66.667 0.73 0.00 0.00 4.34
3014 3141 1.576421 CAAAGAAGCACCTCACGGC 59.424 57.895 0.00 0.00 0.00 5.68
3299 3429 2.126850 CAGCTCGACGCGTTCAGA 60.127 61.111 15.53 12.91 45.59 3.27
3307 3437 2.143594 GACGCGTTCAGAGTCAGGGT 62.144 60.000 15.53 0.00 46.85 4.34
3355 3485 2.125912 CTCCTTGGACGCGGACTG 60.126 66.667 12.47 0.21 0.00 3.51
3363 3493 4.427661 ACGCGGACTGCTCTGCTC 62.428 66.667 12.47 0.00 45.56 4.26
3417 3550 1.014044 CGACGGTGATGGTGAACTGG 61.014 60.000 0.00 0.00 0.00 4.00
3587 3726 2.103263 GCCGAAAGAGGGTGATATCACT 59.897 50.000 29.87 15.37 45.73 3.41
3599 3738 4.219115 GTGATATCACTGAGGAGGAGGAA 58.781 47.826 25.52 0.00 43.25 3.36
3607 3746 0.634465 GAGGAGGAGGAAGAGGAGGT 59.366 60.000 0.00 0.00 0.00 3.85
3608 3747 0.634465 AGGAGGAGGAAGAGGAGGTC 59.366 60.000 0.00 0.00 0.00 3.85
3679 3821 1.219393 GTGAGGAGGCCACTAGCAC 59.781 63.158 5.01 4.56 46.50 4.40
3708 3850 3.800863 CTGCTGCAGCTGCTTCCG 61.801 66.667 36.61 22.89 42.66 4.30
3709 3851 4.631247 TGCTGCAGCTGCTTCCGT 62.631 61.111 36.61 0.00 42.66 4.69
3713 3855 0.386478 CTGCAGCTGCTTCCGTTTTC 60.386 55.000 36.61 6.97 42.66 2.29
3715 3857 1.841663 GCAGCTGCTTCCGTTTTCGA 61.842 55.000 31.33 0.00 41.15 3.71
3716 3858 3.940618 GCAGCTGCTTCCGTTTTCGAC 62.941 57.143 31.33 0.00 41.15 4.20
3767 3909 1.094650 TTGCACAAGACGAAGCAGCA 61.095 50.000 0.00 0.00 38.35 4.41
3788 3930 4.460505 CAGTAATGCGTGCATGATGTATG 58.539 43.478 10.93 0.00 39.88 2.39
3789 3931 4.211794 CAGTAATGCGTGCATGATGTATGA 59.788 41.667 10.93 0.00 39.21 2.15
3871 4015 9.750125 TTGTTGTACAGAGCTTCATATATACAG 57.250 33.333 0.00 0.00 0.00 2.74
3872 4016 7.867909 TGTTGTACAGAGCTTCATATATACAGC 59.132 37.037 0.00 7.08 0.00 4.40
3873 4017 7.524717 TGTACAGAGCTTCATATATACAGCA 57.475 36.000 14.72 0.00 34.49 4.41
3879 4023 6.933521 AGAGCTTCATATATACAGCACTTTGG 59.066 38.462 14.72 0.00 30.06 3.28
3886 4030 7.661437 TCATATATACAGCACTTTGGATTGACC 59.339 37.037 0.00 0.00 39.54 4.02
3918 4062 4.457603 TGGGTCATTTTATCGAACACCTTG 59.542 41.667 0.00 0.00 0.00 3.61
3928 4072 0.238289 GAACACCTTGTGTGCATCGG 59.762 55.000 0.00 0.00 46.79 4.18
3937 4081 2.267351 TGTGCATCGGTGGCCTTTG 61.267 57.895 3.32 0.00 0.00 2.77
3941 4085 1.993369 GCATCGGTGGCCTTTGTAGC 61.993 60.000 3.32 0.00 0.00 3.58
3946 4090 1.210155 GTGGCCTTTGTAGCAAGCG 59.790 57.895 3.32 0.00 0.00 4.68
3978 4122 1.080093 GATGACACGCTGTCCGGAA 60.080 57.895 5.23 0.00 46.40 4.30
3981 4125 2.047274 ACACGCTGTCCGGAATGG 60.047 61.111 5.23 0.00 42.52 3.16
4002 4146 0.402121 GGAGGTGCCCCTATTCCATC 59.598 60.000 0.00 0.00 42.86 3.51
4003 4147 1.439543 GAGGTGCCCCTATTCCATCT 58.560 55.000 0.00 0.00 42.86 2.90
4005 4149 2.175715 GAGGTGCCCCTATTCCATCTTT 59.824 50.000 0.00 0.00 42.86 2.52
4018 4349 5.818136 TTCCATCTTTGATCACCGAATTC 57.182 39.130 0.00 0.00 0.00 2.17
4086 4417 2.031120 ACATTATCACCAAATGGGGCG 58.969 47.619 4.17 0.00 42.91 6.13
4101 4432 1.028330 GGGCGGGCTTTAACACTACC 61.028 60.000 0.26 0.00 0.00 3.18
4140 4471 2.612212 CAGCGCGGGTTTTAGATGTATT 59.388 45.455 8.83 0.00 0.00 1.89
4416 4771 8.201554 TCTTTAGCACATAGAAATGTCATCAC 57.798 34.615 0.00 0.00 44.70 3.06
4434 4789 6.018751 GTCATCACGATACACATACAAATGCT 60.019 38.462 0.00 0.00 36.50 3.79
4651 5006 4.141937 GGAACTATGCAGTACATGAGGTGA 60.142 45.833 0.00 0.00 40.06 4.02
4742 5098 1.600916 CCTTTATAGCTGGCGCCCC 60.601 63.158 26.77 15.54 36.60 5.80
4760 5116 1.548582 CCCTGAACCCATTCACTTGCT 60.549 52.381 0.00 0.00 40.01 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.106149 GGGTCGCCGAGATAACCAAT 59.894 55.000 0.00 0.00 33.27 3.16
36 37 0.248565 GGAACTAGGGAACGTGGGTC 59.751 60.000 0.00 0.00 40.69 4.46
42 43 1.810030 GCAGCGGAACTAGGGAACG 60.810 63.158 0.00 0.00 0.00 3.95
59 60 2.125673 AGTACATCGGTGTGCGGC 60.126 61.111 12.68 0.00 44.50 6.53
66 67 1.610624 CCACAAAGGCAGTACATCGGT 60.611 52.381 0.00 0.00 0.00 4.69
127 128 1.028868 GCTGGCGCATCTTCTTCCTT 61.029 55.000 10.83 0.00 35.78 3.36
169 170 3.612247 CTTCCTCAGGTGCCACCGG 62.612 68.421 8.52 8.15 44.90 5.28
173 174 0.178903 AGGTACTTCCTCAGGTGCCA 60.179 55.000 0.00 0.00 44.42 4.92
246 247 2.859273 GATATGCCTGGATCCCGCCG 62.859 65.000 9.90 0.00 0.00 6.46
248 249 1.078143 GGATATGCCTGGATCCCGC 60.078 63.158 9.90 11.65 36.39 6.13
249 250 1.219124 CGGATATGCCTGGATCCCG 59.781 63.158 9.90 1.92 38.79 5.14
257 263 2.665000 CCCATCGCGGATATGCCT 59.335 61.111 6.13 0.00 36.56 4.75
294 300 3.426568 GACCAAGCTCGCCTGCAC 61.427 66.667 0.00 0.00 34.99 4.57
302 308 3.682292 ATTCCCGCCGACCAAGCTC 62.682 63.158 0.00 0.00 0.00 4.09
303 309 3.268103 AATTCCCGCCGACCAAGCT 62.268 57.895 0.00 0.00 0.00 3.74
304 310 2.750237 AATTCCCGCCGACCAAGC 60.750 61.111 0.00 0.00 0.00 4.01
305 311 2.406616 CCAATTCCCGCCGACCAAG 61.407 63.158 0.00 0.00 0.00 3.61
347 353 6.821616 ATACAAATCCAACATCTCCTCTCT 57.178 37.500 0.00 0.00 0.00 3.10
390 396 6.238429 CGCGTGGCCCTTAAATTTACTTATTA 60.238 38.462 0.00 0.00 0.00 0.98
391 397 5.449451 CGCGTGGCCCTTAAATTTACTTATT 60.449 40.000 0.00 0.00 0.00 1.40
392 398 4.035909 CGCGTGGCCCTTAAATTTACTTAT 59.964 41.667 0.00 0.00 0.00 1.73
393 399 3.374678 CGCGTGGCCCTTAAATTTACTTA 59.625 43.478 0.00 0.00 0.00 2.24
394 400 2.162809 CGCGTGGCCCTTAAATTTACTT 59.837 45.455 0.00 0.00 0.00 2.24
395 401 1.741145 CGCGTGGCCCTTAAATTTACT 59.259 47.619 0.00 0.00 0.00 2.24
396 402 1.796253 GCGCGTGGCCCTTAAATTTAC 60.796 52.381 8.43 0.00 34.80 2.01
397 403 0.452585 GCGCGTGGCCCTTAAATTTA 59.547 50.000 8.43 0.00 34.80 1.40
413 419 0.875059 ACTTTTACTCCAAGCAGCGC 59.125 50.000 0.00 0.00 0.00 5.92
499 506 7.371936 CCGTTAGAGAAGAAGAAGAAGAAGAA 58.628 38.462 0.00 0.00 0.00 2.52
500 507 6.071840 CCCGTTAGAGAAGAAGAAGAAGAAGA 60.072 42.308 0.00 0.00 0.00 2.87
501 508 6.096695 CCCGTTAGAGAAGAAGAAGAAGAAG 58.903 44.000 0.00 0.00 0.00 2.85
523 530 2.894765 GAGCTATCCTCTAGAACCACCC 59.105 54.545 0.00 0.00 37.60 4.61
561 568 1.828979 TTATCCGGGAAAGCACCAAC 58.171 50.000 0.00 0.00 0.00 3.77
628 643 1.295423 CCACTCCGTCCAAATCGGT 59.705 57.895 4.36 0.00 46.86 4.69
631 646 1.829222 TCCTACCACTCCGTCCAAATC 59.171 52.381 0.00 0.00 0.00 2.17
667 685 7.413877 GCCTCACTCTCATCAAAGAAAGTATTG 60.414 40.741 0.00 0.00 0.00 1.90
675 693 3.168292 TCTGCCTCACTCTCATCAAAGA 58.832 45.455 0.00 0.00 0.00 2.52
712 730 0.041982 GAGTTGGAGGGGGAGAGACT 59.958 60.000 0.00 0.00 0.00 3.24
748 766 5.745227 TGATTGGGGTTAGAGATCACTTTC 58.255 41.667 0.00 0.00 0.00 2.62
775 793 7.286316 GGAGAGATAATCAAATTGGGTGTGATT 59.714 37.037 7.32 7.32 42.91 2.57
780 798 6.604795 AGTTGGAGAGATAATCAAATTGGGTG 59.395 38.462 0.00 0.00 0.00 4.61
790 811 6.295575 CCCCACTATGAGTTGGAGAGATAATC 60.296 46.154 0.00 0.00 33.09 1.75
873 894 0.107848 GTTAGGTGGACGGGGTGATG 60.108 60.000 0.00 0.00 0.00 3.07
931 952 4.925861 GCCGATGAGCTGGAGGCC 62.926 72.222 0.00 0.00 41.81 5.19
952 973 3.708631 GGATCAATCCAGAGACAGAGGAA 59.291 47.826 4.09 0.00 46.38 3.36
977 1003 3.129988 CACCAAAGAATCATGGAAGCTCC 59.870 47.826 11.31 0.00 39.12 4.70
983 1009 4.272489 GACCATCACCAAAGAATCATGGA 58.728 43.478 11.31 0.00 39.12 3.41
1168 1218 3.151022 GTCGCCAGAGGAGGAGGG 61.151 72.222 0.00 0.00 0.00 4.30
1192 1242 0.392706 TCGTCTTCTTCTTGGCTGCA 59.607 50.000 0.50 0.00 0.00 4.41
1193 1243 0.793250 GTCGTCTTCTTCTTGGCTGC 59.207 55.000 0.00 0.00 0.00 5.25
1200 1250 0.244178 GGAAGGCGTCGTCTTCTTCT 59.756 55.000 31.95 3.51 43.03 2.85
1201 1251 1.071567 CGGAAGGCGTCGTCTTCTTC 61.072 60.000 31.95 19.12 43.03 2.87
1202 1252 1.080705 CGGAAGGCGTCGTCTTCTT 60.081 57.895 31.95 13.85 43.03 2.52
1312 1362 3.861840 AGTCATATTTCGTCCCTGTGTG 58.138 45.455 0.00 0.00 0.00 3.82
1323 1373 9.352784 CCTCGAGATTTATCTGAGTCATATTTC 57.647 37.037 15.71 0.00 37.25 2.17
1332 1382 6.039941 ACTGGTTACCTCGAGATTTATCTGAG 59.960 42.308 15.71 5.00 37.25 3.35
1342 1392 3.133542 TCGATAGACTGGTTACCTCGAGA 59.866 47.826 15.71 0.00 42.67 4.04
1401 1452 0.250901 AGACAGACCATTGGTGCCAC 60.251 55.000 14.44 0.00 35.25 5.01
1402 1453 0.036732 GAGACAGACCATTGGTGCCA 59.963 55.000 14.44 0.00 35.25 4.92
1403 1454 0.326264 AGAGACAGACCATTGGTGCC 59.674 55.000 14.44 0.00 35.25 5.01
1404 1455 1.446907 CAGAGACAGACCATTGGTGC 58.553 55.000 14.44 5.16 35.25 5.01
1405 1456 1.271001 TGCAGAGACAGACCATTGGTG 60.271 52.381 14.44 2.04 35.25 4.17
1431 1482 6.729391 TGCTGATACTAGTATTCTCTAGCG 57.271 41.667 16.46 1.85 40.50 4.26
1452 1503 6.369615 AGAATCATTTTGTGGTTGCTAATTGC 59.630 34.615 0.00 0.00 43.25 3.56
1502 1560 3.006110 ACCGACAACTCGACCAGATAAAA 59.994 43.478 0.00 0.00 43.06 1.52
1533 1591 2.019249 CATCCACCGCAATCATCTTGT 58.981 47.619 0.00 0.00 0.00 3.16
1534 1592 1.268896 GCATCCACCGCAATCATCTTG 60.269 52.381 0.00 0.00 0.00 3.02
1537 1595 0.309922 CTGCATCCACCGCAATCATC 59.690 55.000 0.00 0.00 39.30 2.92
1539 1597 1.026182 GTCTGCATCCACCGCAATCA 61.026 55.000 0.00 0.00 39.30 2.57
1540 1598 1.026182 TGTCTGCATCCACCGCAATC 61.026 55.000 0.00 0.00 39.30 2.67
1541 1599 1.002257 TGTCTGCATCCACCGCAAT 60.002 52.632 0.00 0.00 39.30 3.56
1552 1612 1.827344 CCTATCAGAGGTGTGTCTGCA 59.173 52.381 0.00 0.00 43.28 4.41
1553 1613 2.103373 TCCTATCAGAGGTGTGTCTGC 58.897 52.381 0.00 0.00 46.76 4.26
1565 1625 8.361139 ACTCGTACCATTTTCTTATCCTATCAG 58.639 37.037 0.00 0.00 0.00 2.90
1581 1641 4.307432 CTGTCTTGTTGAACTCGTACCAT 58.693 43.478 0.00 0.00 0.00 3.55
1583 1643 2.475487 GCTGTCTTGTTGAACTCGTACC 59.525 50.000 0.00 0.00 0.00 3.34
1584 1644 3.120792 TGCTGTCTTGTTGAACTCGTAC 58.879 45.455 0.00 0.00 0.00 3.67
1630 1690 1.874231 CATGCAGTCCATCAGCAGATC 59.126 52.381 0.00 0.00 41.55 2.75
1631 1691 1.489230 TCATGCAGTCCATCAGCAGAT 59.511 47.619 0.00 0.00 41.55 2.90
1632 1692 0.906775 TCATGCAGTCCATCAGCAGA 59.093 50.000 0.00 0.00 41.55 4.26
1633 1693 1.134491 TCTCATGCAGTCCATCAGCAG 60.134 52.381 0.00 0.00 41.55 4.24
1635 1695 1.669779 GTTCTCATGCAGTCCATCAGC 59.330 52.381 0.00 0.00 29.71 4.26
1656 1718 2.038952 CCAAGAGTGACATCCCTGAACA 59.961 50.000 0.00 0.00 0.00 3.18
1660 1722 1.279496 TCCCAAGAGTGACATCCCTG 58.721 55.000 0.00 0.00 0.00 4.45
1663 1725 3.198635 TCTGATTCCCAAGAGTGACATCC 59.801 47.826 0.00 0.00 0.00 3.51
1671 1733 3.457380 TCCCATCTTCTGATTCCCAAGAG 59.543 47.826 2.07 0.00 29.78 2.85
1675 1737 3.689280 GCATTCCCATCTTCTGATTCCCA 60.689 47.826 0.00 0.00 0.00 4.37
1676 1738 2.889678 GCATTCCCATCTTCTGATTCCC 59.110 50.000 0.00 0.00 0.00 3.97
1700 1768 2.025793 TCTGAACCAAACACCCTGTGAA 60.026 45.455 0.49 0.00 36.96 3.18
1701 1769 1.562008 TCTGAACCAAACACCCTGTGA 59.438 47.619 0.49 0.00 36.96 3.58
1702 1770 2.051334 TCTGAACCAAACACCCTGTG 57.949 50.000 0.00 0.00 39.75 3.66
1703 1771 2.025321 ACTTCTGAACCAAACACCCTGT 60.025 45.455 0.00 0.00 0.00 4.00
1704 1772 2.618709 GACTTCTGAACCAAACACCCTG 59.381 50.000 0.00 0.00 0.00 4.45
1705 1773 2.422945 GGACTTCTGAACCAAACACCCT 60.423 50.000 0.00 0.00 0.00 4.34
1706 1774 1.954382 GGACTTCTGAACCAAACACCC 59.046 52.381 0.00 0.00 0.00 4.61
1707 1775 2.932261 AGGACTTCTGAACCAAACACC 58.068 47.619 0.58 0.00 0.00 4.16
1708 1776 4.065789 CCTAGGACTTCTGAACCAAACAC 58.934 47.826 1.05 0.00 0.00 3.32
1709 1777 3.971305 TCCTAGGACTTCTGAACCAAACA 59.029 43.478 7.62 0.00 0.00 2.83
1710 1778 4.316645 GTCCTAGGACTTCTGAACCAAAC 58.683 47.826 31.12 3.26 41.57 2.93
1711 1779 4.618920 GTCCTAGGACTTCTGAACCAAA 57.381 45.455 31.12 0.00 41.57 3.28
1750 1818 1.063492 ACCAAACGGGAGGGACTTTTT 60.063 47.619 0.00 0.00 41.55 1.94
1751 1819 0.554305 ACCAAACGGGAGGGACTTTT 59.446 50.000 0.00 0.00 41.55 2.27
1752 1820 0.554305 AACCAAACGGGAGGGACTTT 59.446 50.000 0.00 0.00 41.55 2.66
1753 1821 0.109913 GAACCAAACGGGAGGGACTT 59.890 55.000 0.00 0.00 41.55 3.01
1755 1823 1.303074 GGAACCAAACGGGAGGGAC 60.303 63.158 0.00 0.00 41.15 4.46
1756 1824 0.178897 TAGGAACCAAACGGGAGGGA 60.179 55.000 0.00 0.00 41.15 4.20
1757 1825 0.252197 CTAGGAACCAAACGGGAGGG 59.748 60.000 0.00 0.00 41.15 4.30
1758 1826 0.252197 CCTAGGAACCAAACGGGAGG 59.748 60.000 1.05 0.00 41.15 4.30
1759 1827 0.252197 CCCTAGGAACCAAACGGGAG 59.748 60.000 11.48 0.00 41.15 4.30
1760 1828 0.178897 TCCCTAGGAACCAAACGGGA 60.179 55.000 11.48 0.00 41.15 5.14
1761 1829 0.035725 GTCCCTAGGAACCAAACGGG 60.036 60.000 11.48 0.00 44.81 5.28
1762 1830 0.981943 AGTCCCTAGGAACCAAACGG 59.018 55.000 11.48 0.00 31.38 4.44
1763 1831 2.853235 AAGTCCCTAGGAACCAAACG 57.147 50.000 11.48 0.00 31.38 3.60
1764 1832 6.071560 CCATAAAAAGTCCCTAGGAACCAAAC 60.072 42.308 11.48 0.00 31.38 2.93
1765 1833 6.014012 CCATAAAAAGTCCCTAGGAACCAAA 58.986 40.000 11.48 0.00 31.38 3.28
1766 1834 5.313772 TCCATAAAAAGTCCCTAGGAACCAA 59.686 40.000 11.48 0.00 31.38 3.67
1767 1835 4.853276 TCCATAAAAAGTCCCTAGGAACCA 59.147 41.667 11.48 0.00 31.38 3.67
1768 1836 5.045066 AGTCCATAAAAAGTCCCTAGGAACC 60.045 44.000 11.48 0.00 31.38 3.62
1769 1837 6.063496 AGTCCATAAAAAGTCCCTAGGAAC 57.937 41.667 11.48 0.00 31.38 3.62
1770 1838 6.713731 AAGTCCATAAAAAGTCCCTAGGAA 57.286 37.500 11.48 0.00 31.38 3.36
1771 1839 6.713731 AAAGTCCATAAAAAGTCCCTAGGA 57.286 37.500 11.48 0.00 0.00 2.94
1772 1840 7.670140 AGAAAAAGTCCATAAAAAGTCCCTAGG 59.330 37.037 0.06 0.06 0.00 3.02
1773 1841 8.637196 AGAAAAAGTCCATAAAAAGTCCCTAG 57.363 34.615 0.00 0.00 0.00 3.02
1774 1842 9.734984 CTAGAAAAAGTCCATAAAAAGTCCCTA 57.265 33.333 0.00 0.00 0.00 3.53
1775 1843 8.225416 ACTAGAAAAAGTCCATAAAAAGTCCCT 58.775 33.333 0.00 0.00 0.00 4.20
1776 1844 8.405418 ACTAGAAAAAGTCCATAAAAAGTCCC 57.595 34.615 0.00 0.00 0.00 4.46
1777 1845 9.286170 AGACTAGAAAAAGTCCATAAAAAGTCC 57.714 33.333 0.00 0.00 45.86 3.85
1781 1849 9.284968 CCAGAGACTAGAAAAAGTCCATAAAAA 57.715 33.333 0.00 0.00 45.86 1.94
1782 1850 7.883311 CCCAGAGACTAGAAAAAGTCCATAAAA 59.117 37.037 0.00 0.00 45.86 1.52
1783 1851 7.236847 TCCCAGAGACTAGAAAAAGTCCATAAA 59.763 37.037 0.00 0.00 45.86 1.40
1784 1852 6.729100 TCCCAGAGACTAGAAAAAGTCCATAA 59.271 38.462 0.00 0.00 45.86 1.90
1785 1853 6.154706 GTCCCAGAGACTAGAAAAAGTCCATA 59.845 42.308 0.00 0.00 45.86 2.74
1786 1854 5.046231 GTCCCAGAGACTAGAAAAAGTCCAT 60.046 44.000 0.00 0.00 45.86 3.41
1787 1855 4.283722 GTCCCAGAGACTAGAAAAAGTCCA 59.716 45.833 0.00 0.00 45.86 4.02
1788 1856 4.823157 GTCCCAGAGACTAGAAAAAGTCC 58.177 47.826 0.00 0.00 45.86 3.85
1808 1876 5.358725 TGTTTGGTTCAGGGACTTTTTAGTC 59.641 40.000 0.00 0.00 34.60 2.59
1809 1877 5.126545 GTGTTTGGTTCAGGGACTTTTTAGT 59.873 40.000 0.00 0.00 34.60 2.24
1810 1878 5.451381 GGTGTTTGGTTCAGGGACTTTTTAG 60.451 44.000 0.00 0.00 34.60 1.85
1811 1879 4.403113 GGTGTTTGGTTCAGGGACTTTTTA 59.597 41.667 0.00 0.00 34.60 1.52
1812 1880 3.196901 GGTGTTTGGTTCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
1813 1881 2.764010 GGTGTTTGGTTCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
1814 1882 2.384828 GGTGTTTGGTTCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
1815 1883 1.411074 GGGTGTTTGGTTCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
1816 1884 0.185175 GGGTGTTTGGTTCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
1817 1885 0.826256 GGGGTGTTTGGTTCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
1818 1886 0.996762 AGGGGTGTTTGGTTCAGGGA 60.997 55.000 0.00 0.00 0.00 4.20
1819 1887 0.539669 GAGGGGTGTTTGGTTCAGGG 60.540 60.000 0.00 0.00 0.00 4.45
1820 1888 0.184933 TGAGGGGTGTTTGGTTCAGG 59.815 55.000 0.00 0.00 0.00 3.86
1821 1889 2.065899 TTGAGGGGTGTTTGGTTCAG 57.934 50.000 0.00 0.00 0.00 3.02
1822 1890 2.315176 CATTGAGGGGTGTTTGGTTCA 58.685 47.619 0.00 0.00 0.00 3.18
1823 1891 1.618343 CCATTGAGGGGTGTTTGGTTC 59.382 52.381 0.00 0.00 0.00 3.62
1824 1892 1.715785 CCATTGAGGGGTGTTTGGTT 58.284 50.000 0.00 0.00 0.00 3.67
1825 1893 3.455737 CCATTGAGGGGTGTTTGGT 57.544 52.632 0.00 0.00 0.00 3.67
1835 1903 1.273327 GGCAGTTGAAACCCATTGAGG 59.727 52.381 0.00 0.00 37.03 3.86
1894 1963 2.408050 AGAACTACTGAAGTGCGCAAG 58.592 47.619 14.00 8.81 39.01 4.01
1942 2011 7.816945 TCAAAAGAAAAGAAAAAGCACTGAG 57.183 32.000 0.00 0.00 0.00 3.35
1960 2044 4.387862 GCAGCATGTTGGATCTTTCAAAAG 59.612 41.667 11.80 0.00 39.31 2.27
2110 2210 3.378427 CACATTCGGGGAGAAGGAAAATC 59.622 47.826 0.00 0.00 42.76 2.17
2149 2249 9.519191 TTATCCTGATCAACTGAGAAATTTGAA 57.481 29.630 0.00 0.00 31.89 2.69
2150 2250 9.690913 ATTATCCTGATCAACTGAGAAATTTGA 57.309 29.630 0.00 0.00 32.58 2.69
2168 2268 7.835682 TGGGCTATAAAATCCATGATTATCCTG 59.164 37.037 0.00 0.00 31.46 3.86
2220 2320 0.667487 ACAGTTCACAGCATCGGTCG 60.667 55.000 0.00 0.00 0.00 4.79
2223 2326 1.195448 GTTCACAGTTCACAGCATCGG 59.805 52.381 0.00 0.00 0.00 4.18
2224 2327 1.136529 CGTTCACAGTTCACAGCATCG 60.137 52.381 0.00 0.00 0.00 3.84
2229 2332 1.195448 GATGCCGTTCACAGTTCACAG 59.805 52.381 0.00 0.00 0.00 3.66
2230 2333 1.225855 GATGCCGTTCACAGTTCACA 58.774 50.000 0.00 0.00 0.00 3.58
2231 2334 0.163788 CGATGCCGTTCACAGTTCAC 59.836 55.000 0.00 0.00 0.00 3.18
2232 2335 0.948623 CCGATGCCGTTCACAGTTCA 60.949 55.000 0.00 0.00 0.00 3.18
2233 2336 1.787847 CCGATGCCGTTCACAGTTC 59.212 57.895 0.00 0.00 0.00 3.01
2234 2337 2.325082 GCCGATGCCGTTCACAGTT 61.325 57.895 0.00 0.00 0.00 3.16
2235 2338 2.742372 GCCGATGCCGTTCACAGT 60.742 61.111 0.00 0.00 0.00 3.55
2292 2395 6.741992 TTCATATGTTTACTGCACTTGGAG 57.258 37.500 1.90 0.00 39.57 3.86
2310 2419 2.917933 CCGGTTCCAGCTTCATTCATA 58.082 47.619 0.00 0.00 0.00 2.15
2312 2421 0.960364 GCCGGTTCCAGCTTCATTCA 60.960 55.000 1.90 0.00 0.00 2.57
2332 2441 4.333633 AAACCGCACAAATTGTTGTTTG 57.666 36.364 13.76 1.55 46.01 2.93
2355 2464 0.465705 CCAGGCAGCCGAGAAATAGA 59.534 55.000 5.55 0.00 0.00 1.98
2390 2499 4.191544 TCTTCTTCCCGCAATAATCACTG 58.808 43.478 0.00 0.00 0.00 3.66
2444 2553 2.025719 CGCCTCTGACTCGCTCATA 58.974 57.895 0.00 0.00 0.00 2.15
2451 2567 3.444805 AGGTCGCGCCTCTGACTC 61.445 66.667 15.08 4.05 46.96 3.36
2466 2582 0.460311 ATTCGCCTTCACCTACGAGG 59.540 55.000 0.00 0.00 42.49 4.63
2467 2583 1.927174 CAATTCGCCTTCACCTACGAG 59.073 52.381 0.00 0.00 35.74 4.18
2468 2584 1.404986 CCAATTCGCCTTCACCTACGA 60.405 52.381 0.00 0.00 0.00 3.43
2469 2585 1.006832 CCAATTCGCCTTCACCTACG 58.993 55.000 0.00 0.00 0.00 3.51
2470 2586 2.280628 CTCCAATTCGCCTTCACCTAC 58.719 52.381 0.00 0.00 0.00 3.18
2471 2587 1.209504 CCTCCAATTCGCCTTCACCTA 59.790 52.381 0.00 0.00 0.00 3.08
2472 2588 0.035056 CCTCCAATTCGCCTTCACCT 60.035 55.000 0.00 0.00 0.00 4.00
2473 2589 0.322546 ACCTCCAATTCGCCTTCACC 60.323 55.000 0.00 0.00 0.00 4.02
2474 2590 1.534729 AACCTCCAATTCGCCTTCAC 58.465 50.000 0.00 0.00 0.00 3.18
2475 2591 1.885887 CAAACCTCCAATTCGCCTTCA 59.114 47.619 0.00 0.00 0.00 3.02
2476 2592 2.095212 GTCAAACCTCCAATTCGCCTTC 60.095 50.000 0.00 0.00 0.00 3.46
2477 2593 1.886542 GTCAAACCTCCAATTCGCCTT 59.113 47.619 0.00 0.00 0.00 4.35
2478 2594 1.202879 TGTCAAACCTCCAATTCGCCT 60.203 47.619 0.00 0.00 0.00 5.52
2479 2595 1.243902 TGTCAAACCTCCAATTCGCC 58.756 50.000 0.00 0.00 0.00 5.54
2480 2596 2.867429 CATGTCAAACCTCCAATTCGC 58.133 47.619 0.00 0.00 0.00 4.70
2481 2597 2.728846 CGCATGTCAAACCTCCAATTCG 60.729 50.000 0.00 0.00 0.00 3.34
2482 2598 2.867429 CGCATGTCAAACCTCCAATTC 58.133 47.619 0.00 0.00 0.00 2.17
2483 2599 1.067635 GCGCATGTCAAACCTCCAATT 60.068 47.619 0.30 0.00 0.00 2.32
2484 2600 0.527565 GCGCATGTCAAACCTCCAAT 59.472 50.000 0.30 0.00 0.00 3.16
2485 2601 0.537143 AGCGCATGTCAAACCTCCAA 60.537 50.000 11.47 0.00 0.00 3.53
2486 2602 0.323302 TAGCGCATGTCAAACCTCCA 59.677 50.000 11.47 0.00 0.00 3.86
2509 2625 1.619332 AGACTTCTTCCTTGACCGGTC 59.381 52.381 28.17 28.17 0.00 4.79
2511 2627 1.618837 TCAGACTTCTTCCTTGACCGG 59.381 52.381 0.00 0.00 0.00 5.28
2529 2645 4.506886 AAAATAAACGGCCAAATCGTCA 57.493 36.364 2.24 0.00 40.18 4.35
2536 2652 6.087522 CGTTAGATGAAAAATAAACGGCCAA 58.912 36.000 2.24 0.00 36.86 4.52
2550 2666 7.561251 TGGAATAATCTGAACCGTTAGATGAA 58.439 34.615 0.00 0.00 34.09 2.57
2552 2668 7.786178 TTGGAATAATCTGAACCGTTAGATG 57.214 36.000 0.00 0.00 34.09 2.90
2650 2766 2.957474 AGTAGGAAAAGGCCAAAAGCA 58.043 42.857 5.01 0.00 46.50 3.91
2721 2837 4.699735 ACCATTTTCATTCGCTGATGTACA 59.300 37.500 0.00 0.00 32.72 2.90
2722 2838 5.065218 AGACCATTTTCATTCGCTGATGTAC 59.935 40.000 0.00 0.00 32.72 2.90
2723 2839 5.185454 AGACCATTTTCATTCGCTGATGTA 58.815 37.500 0.00 0.00 32.72 2.29
2724 2840 4.012374 AGACCATTTTCATTCGCTGATGT 58.988 39.130 0.00 0.00 32.72 3.06
2748 2866 4.272504 TCAGTTGTCAACACGAAGAATTCC 59.727 41.667 17.78 0.00 43.81 3.01
2785 2903 2.096819 CGTTGAGACTCTAGACCTGAGC 59.903 54.545 3.68 0.00 35.12 4.26
2787 2905 2.085320 GCGTTGAGACTCTAGACCTGA 58.915 52.381 3.68 0.00 0.00 3.86
2804 2922 4.175489 CCGATGGAGACGACGCGT 62.175 66.667 13.85 13.85 45.10 6.01
2822 2940 0.029967 CTTGCTCGCAGATCTCGCTA 59.970 55.000 13.06 4.19 33.89 4.26
2887 3011 1.919956 GCTCGACGTTCTTCGGAGGA 61.920 60.000 0.00 0.00 44.69 3.71
2892 3016 2.426183 CGGTGCTCGACGTTCTTCG 61.426 63.158 0.00 0.00 42.43 3.79
2933 3057 0.885196 GAGCGAGCTCGAATAGGGAT 59.115 55.000 38.74 13.00 43.02 3.85
2939 3063 2.443016 AGGGGAGCGAGCTCGAAT 60.443 61.111 38.74 25.75 43.59 3.34
2980 3104 0.393132 TTTGGCATCGTAATCCGGCA 60.393 50.000 0.00 0.00 37.11 5.69
3030 3160 3.173240 GTCGTGCTCCGTCTTCGC 61.173 66.667 0.00 0.00 37.94 4.70
3036 3166 4.104417 GCTCTCGTCGTGCTCCGT 62.104 66.667 0.00 0.00 37.94 4.69
3280 3410 4.342987 TGAACGCGTCGAGCTGCT 62.343 61.111 14.44 0.00 45.59 4.24
3299 3429 1.915769 GTGGAGCTGGACCCTGACT 60.916 63.158 0.00 0.00 0.00 3.41
3407 3540 2.776526 AGGCCCACCAGTTCACCA 60.777 61.111 0.00 0.00 39.06 4.17
3417 3550 2.266055 CTCGTCTTCCAGGCCCAC 59.734 66.667 0.00 0.00 0.00 4.61
3448 3587 2.628657 AGCGACTGGTAGTTCTTGTTCT 59.371 45.455 0.00 0.00 0.00 3.01
3587 3726 0.633921 CCTCCTCTTCCTCCTCCTCA 59.366 60.000 0.00 0.00 0.00 3.86
3599 3738 1.741032 GACGACGACGACCTCCTCT 60.741 63.158 15.32 0.00 42.66 3.69
3653 3795 2.997897 GCCTCCTCACCGTCCACT 60.998 66.667 0.00 0.00 0.00 4.00
3655 3797 4.631740 TGGCCTCCTCACCGTCCA 62.632 66.667 3.32 0.00 0.00 4.02
3698 3840 2.235546 GTCGAAAACGGAAGCAGCT 58.764 52.632 0.00 0.00 0.00 4.24
3699 3841 4.820458 GTCGAAAACGGAAGCAGC 57.180 55.556 0.00 0.00 0.00 5.25
3708 3850 2.409371 CGCTACCACTTTCGTCGAAAAC 60.409 50.000 20.11 4.78 30.84 2.43
3709 3851 1.788308 CGCTACCACTTTCGTCGAAAA 59.212 47.619 20.11 5.50 30.84 2.29
3713 3855 1.069378 GGTCGCTACCACTTTCGTCG 61.069 60.000 1.78 0.00 45.98 5.12
3715 3857 4.981415 GGTCGCTACCACTTTCGT 57.019 55.556 1.78 0.00 45.98 3.85
3767 3909 4.212004 GTCATACATCATGCACGCATTACT 59.788 41.667 0.72 0.00 33.90 2.24
3788 3930 5.560966 ATCAATCACGGTGGTAAAATGTC 57.439 39.130 8.50 0.00 0.00 3.06
3789 3931 5.975693 AATCAATCACGGTGGTAAAATGT 57.024 34.783 8.50 0.00 0.00 2.71
3854 3998 6.933521 CCAAAGTGCTGTATATATGAAGCTCT 59.066 38.462 17.46 16.24 40.23 4.09
3862 4006 7.517320 TGGTCAATCCAAAGTGCTGTATATAT 58.483 34.615 0.00 0.00 44.12 0.86
3864 4008 5.754782 TGGTCAATCCAAAGTGCTGTATAT 58.245 37.500 0.00 0.00 44.12 0.86
3886 4030 5.414454 TCGATAAAATGACCCAAAGTCCTTG 59.586 40.000 0.00 0.00 45.68 3.61
3887 4031 5.566469 TCGATAAAATGACCCAAAGTCCTT 58.434 37.500 0.00 0.00 45.68 3.36
3889 4033 5.182380 TGTTCGATAAAATGACCCAAAGTCC 59.818 40.000 0.00 0.00 45.68 3.85
3891 4035 5.048294 GGTGTTCGATAAAATGACCCAAAGT 60.048 40.000 0.00 0.00 0.00 2.66
3896 4040 4.457949 ACAAGGTGTTCGATAAAATGACCC 59.542 41.667 0.00 0.00 0.00 4.46
3905 4049 2.535012 TGCACACAAGGTGTTCGATA 57.465 45.000 0.00 0.00 45.08 2.92
3918 4062 2.268076 AAAGGCCACCGATGCACAC 61.268 57.895 5.01 0.00 0.00 3.82
3928 4072 1.210155 CGCTTGCTACAAAGGCCAC 59.790 57.895 5.01 0.00 0.00 5.01
3954 4098 3.490759 CAGCGTGTCATCCGTGGC 61.491 66.667 0.00 0.00 0.00 5.01
3955 4099 2.048222 ACAGCGTGTCATCCGTGG 60.048 61.111 0.00 0.00 0.00 4.94
3969 4113 2.746375 CCTCCCCCATTCCGGACAG 61.746 68.421 1.83 0.00 36.56 3.51
3970 4114 2.690881 CCTCCCCCATTCCGGACA 60.691 66.667 1.83 0.00 36.56 4.02
3992 4136 4.960938 TCGGTGATCAAAGATGGAATAGG 58.039 43.478 0.00 0.00 0.00 2.57
3997 4141 4.199310 GGAATTCGGTGATCAAAGATGGA 58.801 43.478 0.00 0.00 0.00 3.41
3998 4142 3.947196 TGGAATTCGGTGATCAAAGATGG 59.053 43.478 0.00 0.00 0.00 3.51
3999 4143 5.530171 AGATGGAATTCGGTGATCAAAGATG 59.470 40.000 0.00 0.00 0.00 2.90
4002 4146 5.355071 TCAAGATGGAATTCGGTGATCAAAG 59.645 40.000 0.00 0.00 0.00 2.77
4003 4147 5.252547 TCAAGATGGAATTCGGTGATCAAA 58.747 37.500 0.00 0.00 0.00 2.69
4005 4149 4.486125 TCAAGATGGAATTCGGTGATCA 57.514 40.909 0.00 0.00 0.00 2.92
4018 4349 9.871238 AGAGAAAATGAATTTTGATCAAGATGG 57.129 29.630 11.90 0.00 39.86 3.51
4050 4381 7.500892 GGTGATAATGTGTGACCCAATATGTTA 59.499 37.037 0.00 0.00 0.00 2.41
4057 4388 3.797559 TGGTGATAATGTGTGACCCAA 57.202 42.857 0.00 0.00 0.00 4.12
4060 4391 4.142182 CCCATTTGGTGATAATGTGTGACC 60.142 45.833 0.00 0.00 32.38 4.02
4061 4392 4.142182 CCCCATTTGGTGATAATGTGTGAC 60.142 45.833 0.00 0.00 32.38 3.67
4086 4417 1.631898 TCCCTGGTAGTGTTAAAGCCC 59.368 52.381 0.00 0.00 0.00 5.19
4101 4432 0.322816 TGCTGCTAGCCTTTTCCCTG 60.323 55.000 13.29 0.00 41.51 4.45
4140 4471 1.975407 GCCTATCCCCGCGCTACTA 60.975 63.158 5.56 0.00 0.00 1.82
4416 4771 3.961860 CGCAAGCATTTGTATGTGTATCG 59.038 43.478 0.00 0.00 36.65 2.92
4434 4789 4.068599 TGATTACATTTGTGGTCTCGCAA 58.931 39.130 0.00 0.00 41.10 4.85
4651 5006 1.736612 GAGAGAGGACTCGTAACCGT 58.263 55.000 0.00 0.00 46.64 4.83
4742 5098 1.815003 GGAGCAAGTGAATGGGTTCAG 59.185 52.381 0.00 0.00 44.58 3.02
4760 5116 0.610174 GAGTGGCATGAGTGTCAGGA 59.390 55.000 0.00 0.00 41.38 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.