Multiple sequence alignment - TraesCS3B01G073300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G073300 chr3B 100.000 3059 0 0 1 3059 44201715 44204773 0.000000e+00 5650.0
1 TraesCS3B01G073300 chr3B 77.792 770 138 21 983 1741 44254728 44255475 7.780000e-121 444.0
2 TraesCS3B01G073300 chr3D 94.578 996 40 3 786 1775 26324948 26323961 0.000000e+00 1528.0
3 TraesCS3B01G073300 chr3D 81.922 614 85 19 2291 2889 556628636 556629238 2.120000e-136 496.0
4 TraesCS3B01G073300 chr3D 88.772 285 26 3 1432 1713 26438162 26437881 8.120000e-91 344.0
5 TraesCS3B01G073300 chr3D 75.817 612 116 22 1140 1741 26314533 26313944 6.460000e-72 281.0
6 TraesCS3B01G073300 chr3D 83.784 259 42 0 1782 2040 26313858 26313600 2.360000e-61 246.0
7 TraesCS3B01G073300 chr3A 87.850 1144 123 13 913 2051 36398273 36397141 0.000000e+00 1328.0
8 TraesCS3B01G073300 chr3A 88.808 965 102 5 1088 2051 36382475 36381516 0.000000e+00 1179.0
9 TraesCS3B01G073300 chr3A 88.987 681 57 11 1 676 12633787 12633120 0.000000e+00 826.0
10 TraesCS3B01G073300 chr3A 79.566 783 113 39 2294 3048 264950427 264949664 1.630000e-142 516.0
11 TraesCS3B01G073300 chr3A 77.037 810 142 28 945 1741 36317531 36316753 2.820000e-115 425.0
12 TraesCS3B01G073300 chr2B 97.025 773 17 4 2293 3059 779171676 779172448 0.000000e+00 1295.0
13 TraesCS3B01G073300 chr5D 95.200 750 28 3 2318 3059 560189017 560188268 0.000000e+00 1179.0
14 TraesCS3B01G073300 chr5D 95.352 667 22 7 2294 2953 384698539 384697875 0.000000e+00 1051.0
15 TraesCS3B01G073300 chr5D 81.612 794 116 18 2291 3059 241370817 241371605 5.570000e-177 630.0
16 TraesCS3B01G073300 chr5D 79.389 786 121 37 2294 3059 420697337 420698101 1.630000e-142 516.0
17 TraesCS3B01G073300 chr4D 89.605 683 55 12 1 678 12405772 12406443 0.000000e+00 854.0
18 TraesCS3B01G073300 chr4D 88.676 680 58 10 1 676 151987220 151987884 0.000000e+00 811.0
19 TraesCS3B01G073300 chr4D 88.116 690 71 10 1 684 489336615 489335931 0.000000e+00 809.0
20 TraesCS3B01G073300 chr1B 89.312 683 64 6 1 677 553825180 553824501 0.000000e+00 848.0
21 TraesCS3B01G073300 chr7D 89.280 681 60 7 1 675 62166099 62166772 0.000000e+00 841.0
22 TraesCS3B01G073300 chr7D 84.903 616 84 6 2308 2915 568942370 568941756 5.610000e-172 614.0
23 TraesCS3B01G073300 chr1D 88.693 681 69 7 1 676 89232375 89233052 0.000000e+00 824.0
24 TraesCS3B01G073300 chr1D 87.794 680 75 7 1 675 478576629 478575953 0.000000e+00 789.0
25 TraesCS3B01G073300 chr1D 81.720 651 105 10 2362 2999 298956070 298955421 5.810000e-147 531.0
26 TraesCS3B01G073300 chr2D 88.106 681 73 6 1 675 172990907 172990229 0.000000e+00 802.0
27 TraesCS3B01G073300 chr2D 82.857 70 12 0 605 674 62303291 62303360 2.550000e-06 63.9
28 TraesCS3B01G073300 chr5A 84.483 638 88 10 2298 2926 104601950 104602585 1.200000e-173 619.0
29 TraesCS3B01G073300 chr4A 84.358 537 72 9 2294 2820 625366085 625365551 1.630000e-142 516.0
30 TraesCS3B01G073300 chr7B 77.610 795 138 30 2287 3059 12177495 12178271 2.160000e-121 446.0
31 TraesCS3B01G073300 chr7B 78.660 567 94 20 2290 2844 572030663 572030112 4.850000e-93 351.0
32 TraesCS3B01G073300 chr4B 88.043 92 7 4 2207 2297 447451947 447452035 4.170000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G073300 chr3B 44201715 44204773 3058 False 5650.0 5650 100.0000 1 3059 1 chr3B.!!$F1 3058
1 TraesCS3B01G073300 chr3B 44254728 44255475 747 False 444.0 444 77.7920 983 1741 1 chr3B.!!$F2 758
2 TraesCS3B01G073300 chr3D 26323961 26324948 987 True 1528.0 1528 94.5780 786 1775 1 chr3D.!!$R1 989
3 TraesCS3B01G073300 chr3D 556628636 556629238 602 False 496.0 496 81.9220 2291 2889 1 chr3D.!!$F1 598
4 TraesCS3B01G073300 chr3D 26313600 26314533 933 True 263.5 281 79.8005 1140 2040 2 chr3D.!!$R3 900
5 TraesCS3B01G073300 chr3A 36397141 36398273 1132 True 1328.0 1328 87.8500 913 2051 1 chr3A.!!$R4 1138
6 TraesCS3B01G073300 chr3A 36381516 36382475 959 True 1179.0 1179 88.8080 1088 2051 1 chr3A.!!$R3 963
7 TraesCS3B01G073300 chr3A 12633120 12633787 667 True 826.0 826 88.9870 1 676 1 chr3A.!!$R1 675
8 TraesCS3B01G073300 chr3A 264949664 264950427 763 True 516.0 516 79.5660 2294 3048 1 chr3A.!!$R5 754
9 TraesCS3B01G073300 chr3A 36316753 36317531 778 True 425.0 425 77.0370 945 1741 1 chr3A.!!$R2 796
10 TraesCS3B01G073300 chr2B 779171676 779172448 772 False 1295.0 1295 97.0250 2293 3059 1 chr2B.!!$F1 766
11 TraesCS3B01G073300 chr5D 560188268 560189017 749 True 1179.0 1179 95.2000 2318 3059 1 chr5D.!!$R2 741
12 TraesCS3B01G073300 chr5D 384697875 384698539 664 True 1051.0 1051 95.3520 2294 2953 1 chr5D.!!$R1 659
13 TraesCS3B01G073300 chr5D 241370817 241371605 788 False 630.0 630 81.6120 2291 3059 1 chr5D.!!$F1 768
14 TraesCS3B01G073300 chr5D 420697337 420698101 764 False 516.0 516 79.3890 2294 3059 1 chr5D.!!$F2 765
15 TraesCS3B01G073300 chr4D 12405772 12406443 671 False 854.0 854 89.6050 1 678 1 chr4D.!!$F1 677
16 TraesCS3B01G073300 chr4D 151987220 151987884 664 False 811.0 811 88.6760 1 676 1 chr4D.!!$F2 675
17 TraesCS3B01G073300 chr4D 489335931 489336615 684 True 809.0 809 88.1160 1 684 1 chr4D.!!$R1 683
18 TraesCS3B01G073300 chr1B 553824501 553825180 679 True 848.0 848 89.3120 1 677 1 chr1B.!!$R1 676
19 TraesCS3B01G073300 chr7D 62166099 62166772 673 False 841.0 841 89.2800 1 675 1 chr7D.!!$F1 674
20 TraesCS3B01G073300 chr7D 568941756 568942370 614 True 614.0 614 84.9030 2308 2915 1 chr7D.!!$R1 607
21 TraesCS3B01G073300 chr1D 89232375 89233052 677 False 824.0 824 88.6930 1 676 1 chr1D.!!$F1 675
22 TraesCS3B01G073300 chr1D 478575953 478576629 676 True 789.0 789 87.7940 1 675 1 chr1D.!!$R2 674
23 TraesCS3B01G073300 chr1D 298955421 298956070 649 True 531.0 531 81.7200 2362 2999 1 chr1D.!!$R1 637
24 TraesCS3B01G073300 chr2D 172990229 172990907 678 True 802.0 802 88.1060 1 675 1 chr2D.!!$R1 674
25 TraesCS3B01G073300 chr5A 104601950 104602585 635 False 619.0 619 84.4830 2298 2926 1 chr5A.!!$F1 628
26 TraesCS3B01G073300 chr4A 625365551 625366085 534 True 516.0 516 84.3580 2294 2820 1 chr4A.!!$R1 526
27 TraesCS3B01G073300 chr7B 12177495 12178271 776 False 446.0 446 77.6100 2287 3059 1 chr7B.!!$F1 772
28 TraesCS3B01G073300 chr7B 572030112 572030663 551 True 351.0 351 78.6600 2290 2844 1 chr7B.!!$R1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 782 0.692476 TCATGTGTCTGGTTCCAGGG 59.308 55.0 17.37 0.0 35.01 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2062 2146 0.100682 CCAACGTCGATCCATCTCGT 59.899 55.0 0.0 0.0 39.62 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 97 2.600556 CGGTTGCATGTCATCGCTAATG 60.601 50.000 0.00 0.00 36.65 1.90
105 107 4.202253 TGTCATCGCTAATGAGTTGGCTAT 60.202 41.667 0.00 0.00 45.06 2.97
273 278 8.958060 TCTCCTTGATAGGCAATTATAGTAGT 57.042 34.615 0.00 0.00 41.69 2.73
318 329 4.714802 TCCTATAGCACTAAAGTTGCCTCA 59.285 41.667 0.00 0.00 0.00 3.86
325 336 3.254166 CACTAAAGTTGCCTCAACAGCAT 59.746 43.478 11.63 0.00 45.66 3.79
447 460 5.659048 ATTCCGATACTCGAATCAAAAGC 57.341 39.130 0.00 0.00 43.74 3.51
518 533 2.542020 TTTGAGTTGTGCTCCGATGA 57.458 45.000 0.00 0.00 43.48 2.92
530 545 0.895530 TCCGATGAGACAAGGACCAC 59.104 55.000 0.00 0.00 0.00 4.16
538 553 5.304686 TGAGACAAGGACCACATACTTTT 57.695 39.130 0.00 0.00 0.00 2.27
574 592 5.339008 AAGGATGACACGCACTCTTTATA 57.661 39.130 0.00 0.00 0.00 0.98
575 593 4.683832 AGGATGACACGCACTCTTTATAC 58.316 43.478 0.00 0.00 0.00 1.47
602 624 1.180029 GCTCAGATGCAACCCATGTT 58.820 50.000 0.00 0.00 33.29 2.71
603 625 1.133790 GCTCAGATGCAACCCATGTTC 59.866 52.381 0.00 0.00 33.29 3.18
644 668 4.697756 TGCGTTCGGGAAGCCCAG 62.698 66.667 3.03 0.00 45.83 4.45
645 669 4.388499 GCGTTCGGGAAGCCCAGA 62.388 66.667 3.03 0.00 45.83 3.86
678 702 6.094881 GCTGCACTAATAAGTATTTGGGTTGA 59.905 38.462 0.00 0.00 33.48 3.18
679 703 7.362574 GCTGCACTAATAAGTATTTGGGTTGAA 60.363 37.037 0.00 0.00 33.48 2.69
680 704 8.588290 TGCACTAATAAGTATTTGGGTTGAAT 57.412 30.769 0.00 0.00 33.48 2.57
681 705 9.688091 TGCACTAATAAGTATTTGGGTTGAATA 57.312 29.630 0.00 0.00 33.48 1.75
695 719 9.627395 TTTGGGTTGAATAATAATAACAACGTG 57.373 29.630 0.00 0.00 40.78 4.49
696 720 7.763356 TGGGTTGAATAATAATAACAACGTGG 58.237 34.615 0.00 0.00 40.78 4.94
697 721 7.610692 TGGGTTGAATAATAATAACAACGTGGA 59.389 33.333 0.00 0.00 40.78 4.02
698 722 8.626526 GGGTTGAATAATAATAACAACGTGGAT 58.373 33.333 0.00 0.00 40.78 3.41
743 767 8.707938 TCATAATAGTTGGCGATAATCTCATG 57.292 34.615 0.00 0.00 0.00 3.07
744 768 8.314021 TCATAATAGTTGGCGATAATCTCATGT 58.686 33.333 0.00 0.00 0.00 3.21
745 769 6.791887 AATAGTTGGCGATAATCTCATGTG 57.208 37.500 0.00 0.00 0.00 3.21
746 770 4.142609 AGTTGGCGATAATCTCATGTGT 57.857 40.909 0.00 0.00 0.00 3.72
747 771 4.122776 AGTTGGCGATAATCTCATGTGTC 58.877 43.478 0.00 0.00 0.00 3.67
748 772 4.122776 GTTGGCGATAATCTCATGTGTCT 58.877 43.478 0.00 0.00 0.00 3.41
749 773 3.721035 TGGCGATAATCTCATGTGTCTG 58.279 45.455 0.00 0.00 0.00 3.51
750 774 3.062763 GGCGATAATCTCATGTGTCTGG 58.937 50.000 0.00 0.00 0.00 3.86
751 775 3.493350 GGCGATAATCTCATGTGTCTGGT 60.493 47.826 0.00 0.00 0.00 4.00
752 776 4.122776 GCGATAATCTCATGTGTCTGGTT 58.877 43.478 0.00 0.00 0.00 3.67
753 777 4.210120 GCGATAATCTCATGTGTCTGGTTC 59.790 45.833 0.00 0.00 0.00 3.62
754 778 4.747108 CGATAATCTCATGTGTCTGGTTCC 59.253 45.833 0.00 0.00 0.00 3.62
755 779 5.674525 GATAATCTCATGTGTCTGGTTCCA 58.325 41.667 0.00 0.00 0.00 3.53
756 780 3.623906 ATCTCATGTGTCTGGTTCCAG 57.376 47.619 12.20 12.20 35.54 3.86
757 781 1.625315 TCTCATGTGTCTGGTTCCAGG 59.375 52.381 17.37 2.28 35.01 4.45
758 782 0.692476 TCATGTGTCTGGTTCCAGGG 59.308 55.000 17.37 0.00 35.01 4.45
759 783 0.692476 CATGTGTCTGGTTCCAGGGA 59.308 55.000 17.37 3.34 35.01 4.20
760 784 1.073763 CATGTGTCTGGTTCCAGGGAA 59.926 52.381 17.37 0.00 35.01 3.97
778 802 2.480419 GGAACCTGTTGTTGATCACTCG 59.520 50.000 0.00 0.00 37.29 4.18
779 803 2.910688 ACCTGTTGTTGATCACTCGT 57.089 45.000 0.00 0.00 0.00 4.18
780 804 2.483876 ACCTGTTGTTGATCACTCGTG 58.516 47.619 0.00 0.00 0.00 4.35
781 805 2.102420 ACCTGTTGTTGATCACTCGTGA 59.898 45.455 0.00 1.79 44.59 4.35
782 806 6.534005 GAACCTGTTGTTGATCACTCGTGAT 61.534 44.000 12.04 12.04 44.38 3.06
783 807 7.283833 GAACCTGTTGTTGATCACTCGTGATA 61.284 42.308 12.16 0.00 42.96 2.15
784 808 8.686194 GAACCTGTTGTTGATCACTCGTGATAA 61.686 40.741 12.16 2.82 42.96 1.75
791 815 1.481871 TCACTCGTGATAACCCCTCC 58.518 55.000 0.00 0.00 34.14 4.30
792 816 1.006758 TCACTCGTGATAACCCCTCCT 59.993 52.381 0.00 0.00 34.14 3.69
793 817 1.409427 CACTCGTGATAACCCCTCCTC 59.591 57.143 0.00 0.00 0.00 3.71
812 836 4.276431 TCCTCCGTGGTTGTTCAAAAATAC 59.724 41.667 0.00 0.00 37.07 1.89
871 901 6.786122 AGTCACCCTTATTTACCAAAGCTAA 58.214 36.000 0.00 0.00 0.00 3.09
910 940 0.935196 GTCCAGCGTCGTTGAAACTT 59.065 50.000 10.97 0.00 0.00 2.66
911 941 0.934496 TCCAGCGTCGTTGAAACTTG 59.066 50.000 10.97 0.00 0.00 3.16
912 942 0.934496 CCAGCGTCGTTGAAACTTGA 59.066 50.000 10.97 0.00 0.00 3.02
913 943 1.329292 CCAGCGTCGTTGAAACTTGAA 59.671 47.619 10.97 0.00 0.00 2.69
914 944 2.223157 CCAGCGTCGTTGAAACTTGAAA 60.223 45.455 10.97 0.00 0.00 2.69
915 945 2.776225 CAGCGTCGTTGAAACTTGAAAC 59.224 45.455 2.50 0.00 0.00 2.78
916 946 2.676342 AGCGTCGTTGAAACTTGAAACT 59.324 40.909 0.00 0.00 0.00 2.66
990 1020 4.576879 TGCTTGCTCTCATATCCATCATC 58.423 43.478 0.00 0.00 0.00 2.92
1138 1168 1.502231 CTACAAGCACGTGAAGCAGT 58.498 50.000 22.23 11.81 0.00 4.40
1395 1425 1.979155 GGGCTGGGGCTTCAAAGAC 60.979 63.158 0.00 0.00 38.73 3.01
1429 1459 2.727103 GATCTGGTCGAGGGAGAGG 58.273 63.158 0.00 0.00 0.00 3.69
1839 1923 2.092914 CGGGCTGGAGAAGATAAAGGTT 60.093 50.000 0.00 0.00 0.00 3.50
1852 1936 1.048601 AAAGGTTGTCTGCGAGGAGA 58.951 50.000 0.00 0.00 0.00 3.71
1944 2028 1.482593 CTACTGAAGGAGGCGTCCATT 59.517 52.381 26.40 16.96 46.80 3.16
1945 2029 1.568504 ACTGAAGGAGGCGTCCATTA 58.431 50.000 26.40 11.35 46.80 1.90
1953 2037 2.355818 GGAGGCGTCCATTAAGTTCCTT 60.356 50.000 20.47 0.00 43.31 3.36
1957 2041 3.127030 GGCGTCCATTAAGTTCCTTTCTG 59.873 47.826 0.00 0.00 0.00 3.02
1976 2060 3.521937 TCTGGTCCCGGTAATCTGAAATT 59.478 43.478 0.00 0.00 0.00 1.82
1998 2082 0.742990 TCATGGCGACCGATGGTTTC 60.743 55.000 0.00 0.00 35.25 2.78
1999 2083 1.451387 ATGGCGACCGATGGTTTCC 60.451 57.895 0.00 0.00 35.25 3.13
2007 2091 1.651240 CCGATGGTTTCCAGCAGCTG 61.651 60.000 16.23 16.23 40.32 4.24
2009 2093 0.807496 GATGGTTTCCAGCAGCTGAC 59.193 55.000 24.90 13.80 40.02 3.51
2023 2107 0.461961 GCTGACGAGAAGCTACCCAT 59.538 55.000 0.00 0.00 37.69 4.00
2037 2121 2.821366 CCATCTGCGGTGCTGGAC 60.821 66.667 5.87 0.00 0.00 4.02
2042 2126 3.241530 TGCGGTGCTGGACCTTCT 61.242 61.111 16.57 0.00 43.55 2.85
2043 2127 2.032681 GCGGTGCTGGACCTTCTT 59.967 61.111 16.57 0.00 43.55 2.52
2046 2130 0.951040 CGGTGCTGGACCTTCTTGTC 60.951 60.000 16.57 0.00 43.55 3.18
2051 2135 1.512926 CTGGACCTTCTTGTCAACCG 58.487 55.000 0.00 0.00 36.97 4.44
2052 2136 0.534203 TGGACCTTCTTGTCAACCGC 60.534 55.000 0.00 0.00 36.97 5.68
2053 2137 1.235281 GGACCTTCTTGTCAACCGCC 61.235 60.000 0.00 0.00 36.97 6.13
2054 2138 0.250338 GACCTTCTTGTCAACCGCCT 60.250 55.000 0.00 0.00 35.29 5.52
2055 2139 1.001633 GACCTTCTTGTCAACCGCCTA 59.998 52.381 0.00 0.00 35.29 3.93
2056 2140 1.628846 ACCTTCTTGTCAACCGCCTAT 59.371 47.619 0.00 0.00 0.00 2.57
2057 2141 2.835764 ACCTTCTTGTCAACCGCCTATA 59.164 45.455 0.00 0.00 0.00 1.31
2058 2142 3.118738 ACCTTCTTGTCAACCGCCTATAG 60.119 47.826 0.00 0.00 0.00 1.31
2059 2143 2.596904 TCTTGTCAACCGCCTATAGC 57.403 50.000 0.00 0.00 38.52 2.97
2070 2154 2.546195 GCCTATAGCGTACGAGATGG 57.454 55.000 21.65 14.05 0.00 3.51
2071 2155 2.082231 GCCTATAGCGTACGAGATGGA 58.918 52.381 21.65 0.00 0.00 3.41
2072 2156 2.683867 GCCTATAGCGTACGAGATGGAT 59.316 50.000 21.65 4.50 0.00 3.41
2073 2157 3.242804 GCCTATAGCGTACGAGATGGATC 60.243 52.174 21.65 0.00 0.00 3.36
2075 2159 2.159327 TAGCGTACGAGATGGATCGA 57.841 50.000 21.65 0.00 45.56 3.59
2076 2160 0.587285 AGCGTACGAGATGGATCGAC 59.413 55.000 21.65 0.00 45.56 4.20
2077 2161 0.721811 GCGTACGAGATGGATCGACG 60.722 60.000 21.65 9.27 45.56 5.12
2078 2162 0.580578 CGTACGAGATGGATCGACGT 59.419 55.000 10.44 15.12 45.56 4.34
2079 2163 1.004185 CGTACGAGATGGATCGACGTT 60.004 52.381 10.44 0.00 45.56 3.99
2080 2164 2.373269 GTACGAGATGGATCGACGTTG 58.627 52.381 15.68 0.00 45.56 4.10
2081 2165 0.100682 ACGAGATGGATCGACGTTGG 59.899 55.000 2.20 0.00 45.56 3.77
2082 2166 1.209275 CGAGATGGATCGACGTTGGC 61.209 60.000 2.20 0.00 45.56 4.52
2083 2167 0.179111 GAGATGGATCGACGTTGGCA 60.179 55.000 2.20 0.00 0.00 4.92
2084 2168 0.249120 AGATGGATCGACGTTGGCAA 59.751 50.000 2.20 0.00 0.00 4.52
2085 2169 1.083489 GATGGATCGACGTTGGCAAA 58.917 50.000 0.00 0.00 0.00 3.68
2086 2170 1.466950 GATGGATCGACGTTGGCAAAA 59.533 47.619 0.00 0.00 0.00 2.44
2087 2171 1.529226 TGGATCGACGTTGGCAAAAT 58.471 45.000 0.00 0.00 0.00 1.82
2088 2172 1.883275 TGGATCGACGTTGGCAAAATT 59.117 42.857 0.00 0.00 0.00 1.82
2089 2173 3.075148 TGGATCGACGTTGGCAAAATTA 58.925 40.909 0.00 0.00 0.00 1.40
2090 2174 3.502595 TGGATCGACGTTGGCAAAATTAA 59.497 39.130 0.00 0.00 0.00 1.40
2091 2175 4.023107 TGGATCGACGTTGGCAAAATTAAA 60.023 37.500 0.00 0.00 0.00 1.52
2092 2176 5.099575 GGATCGACGTTGGCAAAATTAAAT 58.900 37.500 0.00 0.00 0.00 1.40
2093 2177 5.575218 GGATCGACGTTGGCAAAATTAAATT 59.425 36.000 0.00 0.00 0.00 1.82
2094 2178 6.748198 GGATCGACGTTGGCAAAATTAAATTA 59.252 34.615 0.00 0.00 0.00 1.40
2095 2179 7.044314 GGATCGACGTTGGCAAAATTAAATTAG 60.044 37.037 0.00 0.00 0.00 1.73
2096 2180 6.087522 TCGACGTTGGCAAAATTAAATTAGG 58.912 36.000 0.00 0.00 0.00 2.69
2097 2181 6.072618 TCGACGTTGGCAAAATTAAATTAGGA 60.073 34.615 0.00 0.00 0.00 2.94
2098 2182 6.583050 CGACGTTGGCAAAATTAAATTAGGAA 59.417 34.615 0.00 0.00 0.00 3.36
2099 2183 7.274686 CGACGTTGGCAAAATTAAATTAGGAAT 59.725 33.333 0.00 0.00 0.00 3.01
2100 2184 8.840833 ACGTTGGCAAAATTAAATTAGGAATT 57.159 26.923 0.00 0.00 0.00 2.17
2101 2185 9.278978 ACGTTGGCAAAATTAAATTAGGAATTT 57.721 25.926 0.00 2.96 43.19 1.82
2102 2186 9.540431 CGTTGGCAAAATTAAATTAGGAATTTG 57.460 29.630 0.00 0.00 41.01 2.32
2112 2196 9.649316 ATTAAATTAGGAATTTGATAACCCGGA 57.351 29.630 0.73 0.00 41.01 5.14
2113 2197 7.964666 AAATTAGGAATTTGATAACCCGGAA 57.035 32.000 0.73 0.00 39.50 4.30
2114 2198 7.964666 AATTAGGAATTTGATAACCCGGAAA 57.035 32.000 0.73 0.00 0.00 3.13
2115 2199 7.582667 ATTAGGAATTTGATAACCCGGAAAG 57.417 36.000 0.73 0.00 0.00 2.62
2116 2200 3.699538 AGGAATTTGATAACCCGGAAAGC 59.300 43.478 0.73 0.00 0.00 3.51
2117 2201 3.699538 GGAATTTGATAACCCGGAAAGCT 59.300 43.478 0.73 0.00 0.00 3.74
2118 2202 4.202020 GGAATTTGATAACCCGGAAAGCTC 60.202 45.833 0.73 0.00 0.00 4.09
2119 2203 3.426787 TTTGATAACCCGGAAAGCTCA 57.573 42.857 0.73 0.00 0.00 4.26
2120 2204 2.691409 TGATAACCCGGAAAGCTCAG 57.309 50.000 0.73 0.00 0.00 3.35
2121 2205 1.209504 TGATAACCCGGAAAGCTCAGG 59.790 52.381 0.73 0.00 36.72 3.86
2122 2206 1.209747 GATAACCCGGAAAGCTCAGGT 59.790 52.381 0.73 0.00 35.28 4.00
2123 2207 1.941377 TAACCCGGAAAGCTCAGGTA 58.059 50.000 0.73 0.00 35.28 3.08
2124 2208 0.323957 AACCCGGAAAGCTCAGGTAC 59.676 55.000 0.73 0.00 35.28 3.34
2125 2209 1.153628 CCCGGAAAGCTCAGGTACG 60.154 63.158 0.73 0.00 35.28 3.67
2126 2210 1.601419 CCCGGAAAGCTCAGGTACGA 61.601 60.000 0.73 0.00 35.28 3.43
2127 2211 0.179134 CCGGAAAGCTCAGGTACGAG 60.179 60.000 0.00 0.00 32.61 4.18
2128 2212 0.179134 CGGAAAGCTCAGGTACGAGG 60.179 60.000 0.00 0.00 33.36 4.63
2129 2213 0.175989 GGAAAGCTCAGGTACGAGGG 59.824 60.000 0.00 0.00 33.36 4.30
2130 2214 0.460459 GAAAGCTCAGGTACGAGGGC 60.460 60.000 0.08 0.08 35.05 5.19
2131 2215 1.192146 AAAGCTCAGGTACGAGGGCA 61.192 55.000 10.22 0.00 37.20 5.36
2132 2216 0.978146 AAGCTCAGGTACGAGGGCAT 60.978 55.000 10.22 0.00 37.20 4.40
2133 2217 1.227380 GCTCAGGTACGAGGGCATG 60.227 63.158 3.41 0.00 34.96 4.06
2134 2218 1.443407 CTCAGGTACGAGGGCATGG 59.557 63.158 0.00 0.00 0.00 3.66
2135 2219 2.203070 CAGGTACGAGGGCATGGC 60.203 66.667 11.56 11.56 0.00 4.40
2136 2220 2.687200 AGGTACGAGGGCATGGCA 60.687 61.111 22.06 0.00 0.00 4.92
2137 2221 2.270850 GGTACGAGGGCATGGCAA 59.729 61.111 22.06 0.00 0.00 4.52
2138 2222 1.377987 GGTACGAGGGCATGGCAAA 60.378 57.895 22.06 0.00 0.00 3.68
2139 2223 0.751643 GGTACGAGGGCATGGCAAAT 60.752 55.000 22.06 6.07 0.00 2.32
2140 2224 0.663153 GTACGAGGGCATGGCAAATC 59.337 55.000 22.06 14.01 0.00 2.17
2141 2225 0.813610 TACGAGGGCATGGCAAATCG 60.814 55.000 27.46 27.46 36.13 3.34
2142 2226 1.819208 CGAGGGCATGGCAAATCGA 60.819 57.895 26.10 0.00 33.46 3.59
2143 2227 1.168407 CGAGGGCATGGCAAATCGAT 61.168 55.000 26.10 0.00 33.46 3.59
2144 2228 1.877680 CGAGGGCATGGCAAATCGATA 60.878 52.381 26.10 0.00 33.46 2.92
2145 2229 1.808945 GAGGGCATGGCAAATCGATAG 59.191 52.381 22.06 0.00 0.00 2.08
2146 2230 1.143684 AGGGCATGGCAAATCGATAGT 59.856 47.619 22.06 0.00 37.40 2.12
2147 2231 1.956477 GGGCATGGCAAATCGATAGTT 59.044 47.619 22.06 0.00 37.40 2.24
2148 2232 2.362077 GGGCATGGCAAATCGATAGTTT 59.638 45.455 22.06 0.00 37.40 2.66
2149 2233 3.181476 GGGCATGGCAAATCGATAGTTTT 60.181 43.478 22.06 0.00 38.46 2.43
2150 2234 4.044426 GGCATGGCAAATCGATAGTTTTC 58.956 43.478 15.47 0.00 35.94 2.29
2151 2235 3.725740 GCATGGCAAATCGATAGTTTTCG 59.274 43.478 0.00 0.00 35.94 3.46
2168 2252 6.934210 AGTTTTCGATGAAATATAGTGACGC 58.066 36.000 0.00 0.00 31.34 5.19
2169 2253 6.533723 AGTTTTCGATGAAATATAGTGACGCA 59.466 34.615 0.00 0.00 31.34 5.24
2170 2254 6.895607 TTTCGATGAAATATAGTGACGCAA 57.104 33.333 0.00 0.00 0.00 4.85
2171 2255 6.895607 TTCGATGAAATATAGTGACGCAAA 57.104 33.333 0.00 0.00 0.00 3.68
2172 2256 6.895607 TCGATGAAATATAGTGACGCAAAA 57.104 33.333 0.00 0.00 0.00 2.44
2173 2257 7.297229 TCGATGAAATATAGTGACGCAAAAA 57.703 32.000 0.00 0.00 0.00 1.94
2174 2258 7.915508 TCGATGAAATATAGTGACGCAAAAAT 58.084 30.769 0.00 0.00 0.00 1.82
2175 2259 7.850492 TCGATGAAATATAGTGACGCAAAAATG 59.150 33.333 0.00 0.00 0.00 2.32
2176 2260 7.112009 CGATGAAATATAGTGACGCAAAAATGG 59.888 37.037 0.00 0.00 0.00 3.16
2177 2261 6.033341 TGAAATATAGTGACGCAAAAATGGC 58.967 36.000 0.00 0.00 0.00 4.40
2178 2262 5.574891 AATATAGTGACGCAAAAATGGCA 57.425 34.783 0.00 0.00 0.00 4.92
2179 2263 3.932545 ATAGTGACGCAAAAATGGCAA 57.067 38.095 0.00 0.00 0.00 4.52
2180 2264 1.851658 AGTGACGCAAAAATGGCAAC 58.148 45.000 0.00 0.00 0.00 4.17
2194 2278 3.713858 TGGCAACATGACAACTTCTTG 57.286 42.857 0.00 0.00 46.17 3.02
2195 2279 2.223782 TGGCAACATGACAACTTCTTGC 60.224 45.455 0.00 1.95 46.17 4.01
2196 2280 2.035066 GGCAACATGACAACTTCTTGCT 59.965 45.455 0.00 0.00 35.43 3.91
2197 2281 3.491447 GGCAACATGACAACTTCTTGCTT 60.491 43.478 0.00 0.00 35.43 3.91
2198 2282 4.261572 GGCAACATGACAACTTCTTGCTTA 60.262 41.667 0.00 0.00 35.43 3.09
2199 2283 5.280945 GCAACATGACAACTTCTTGCTTAA 58.719 37.500 0.00 0.00 33.51 1.85
2200 2284 5.400485 GCAACATGACAACTTCTTGCTTAAG 59.600 40.000 0.00 0.00 33.51 1.85
2201 2285 6.498304 CAACATGACAACTTCTTGCTTAAGT 58.502 36.000 0.00 0.00 38.82 2.24
2202 2286 6.699575 ACATGACAACTTCTTGCTTAAGTT 57.300 33.333 0.00 6.01 45.64 2.66
2203 2287 7.100458 ACATGACAACTTCTTGCTTAAGTTT 57.900 32.000 0.00 2.96 42.97 2.66
2204 2288 8.220755 ACATGACAACTTCTTGCTTAAGTTTA 57.779 30.769 0.00 0.00 42.97 2.01
2205 2289 8.850156 ACATGACAACTTCTTGCTTAAGTTTAT 58.150 29.630 0.00 2.33 42.97 1.40
2206 2290 9.683069 CATGACAACTTCTTGCTTAAGTTTATT 57.317 29.630 4.02 0.00 42.97 1.40
2223 2307 6.924111 AGTTTATTAACTTGCCATCCTTGTG 58.076 36.000 0.00 0.00 41.85 3.33
2224 2308 6.493458 AGTTTATTAACTTGCCATCCTTGTGT 59.507 34.615 0.00 0.00 41.85 3.72
2225 2309 6.509418 TTATTAACTTGCCATCCTTGTGTC 57.491 37.500 0.00 0.00 0.00 3.67
2226 2310 2.363306 AACTTGCCATCCTTGTGTCA 57.637 45.000 0.00 0.00 0.00 3.58
2227 2311 1.609208 ACTTGCCATCCTTGTGTCAC 58.391 50.000 0.00 0.00 0.00 3.67
2228 2312 1.143684 ACTTGCCATCCTTGTGTCACT 59.856 47.619 4.27 0.00 0.00 3.41
2229 2313 2.371841 ACTTGCCATCCTTGTGTCACTA 59.628 45.455 4.27 0.00 0.00 2.74
2230 2314 2.768253 TGCCATCCTTGTGTCACTAG 57.232 50.000 7.38 7.38 0.00 2.57
2231 2315 2.256306 TGCCATCCTTGTGTCACTAGA 58.744 47.619 14.99 4.60 0.00 2.43
2232 2316 2.637382 TGCCATCCTTGTGTCACTAGAA 59.363 45.455 14.99 0.00 0.00 2.10
2233 2317 3.264193 TGCCATCCTTGTGTCACTAGAAT 59.736 43.478 14.99 0.00 0.00 2.40
2234 2318 4.263462 TGCCATCCTTGTGTCACTAGAATT 60.263 41.667 14.99 0.00 0.00 2.17
2235 2319 4.095483 GCCATCCTTGTGTCACTAGAATTG 59.905 45.833 14.99 9.21 0.00 2.32
2236 2320 4.095483 CCATCCTTGTGTCACTAGAATTGC 59.905 45.833 14.99 0.00 0.00 3.56
2237 2321 3.674997 TCCTTGTGTCACTAGAATTGCC 58.325 45.455 14.99 0.00 0.00 4.52
2238 2322 3.072330 TCCTTGTGTCACTAGAATTGCCA 59.928 43.478 14.99 0.00 0.00 4.92
2239 2323 4.012374 CCTTGTGTCACTAGAATTGCCAT 58.988 43.478 14.99 0.00 0.00 4.40
2240 2324 4.460382 CCTTGTGTCACTAGAATTGCCATT 59.540 41.667 14.99 0.00 0.00 3.16
2241 2325 5.647658 CCTTGTGTCACTAGAATTGCCATTA 59.352 40.000 14.99 0.00 0.00 1.90
2242 2326 6.150976 CCTTGTGTCACTAGAATTGCCATTAA 59.849 38.462 14.99 0.00 0.00 1.40
2243 2327 7.309133 CCTTGTGTCACTAGAATTGCCATTAAA 60.309 37.037 14.99 0.00 0.00 1.52
2244 2328 7.517614 TGTGTCACTAGAATTGCCATTAAAA 57.482 32.000 4.27 0.00 0.00 1.52
2245 2329 7.946207 TGTGTCACTAGAATTGCCATTAAAAA 58.054 30.769 4.27 0.00 0.00 1.94
2246 2330 7.865385 TGTGTCACTAGAATTGCCATTAAAAAC 59.135 33.333 4.27 0.00 0.00 2.43
2247 2331 7.060633 GTGTCACTAGAATTGCCATTAAAAACG 59.939 37.037 0.00 0.00 0.00 3.60
2248 2332 7.081976 GTCACTAGAATTGCCATTAAAAACGT 58.918 34.615 0.00 0.00 0.00 3.99
2249 2333 7.593644 GTCACTAGAATTGCCATTAAAAACGTT 59.406 33.333 0.00 0.00 0.00 3.99
2250 2334 7.806014 TCACTAGAATTGCCATTAAAAACGTTC 59.194 33.333 0.00 0.00 0.00 3.95
2251 2335 6.799925 ACTAGAATTGCCATTAAAAACGTTCG 59.200 34.615 0.00 0.00 0.00 3.95
2252 2336 5.764131 AGAATTGCCATTAAAAACGTTCGA 58.236 33.333 0.00 0.00 0.00 3.71
2253 2337 6.386654 AGAATTGCCATTAAAAACGTTCGAT 58.613 32.000 0.00 0.00 0.00 3.59
2254 2338 6.866248 AGAATTGCCATTAAAAACGTTCGATT 59.134 30.769 0.00 0.00 0.00 3.34
2255 2339 7.383843 AGAATTGCCATTAAAAACGTTCGATTT 59.616 29.630 0.00 1.03 0.00 2.17
2256 2340 6.830114 TTGCCATTAAAAACGTTCGATTTT 57.170 29.167 14.98 14.98 33.59 1.82
2257 2341 6.441099 TGCCATTAAAAACGTTCGATTTTC 57.559 33.333 14.27 3.91 31.62 2.29
2258 2342 5.402867 TGCCATTAAAAACGTTCGATTTTCC 59.597 36.000 14.27 3.78 31.62 3.13
2259 2343 5.402867 GCCATTAAAAACGTTCGATTTTCCA 59.597 36.000 14.27 5.95 31.62 3.53
2260 2344 6.090223 GCCATTAAAAACGTTCGATTTTCCAT 59.910 34.615 14.27 7.55 31.62 3.41
2261 2345 7.444245 CCATTAAAAACGTTCGATTTTCCATG 58.556 34.615 14.27 15.59 31.62 3.66
2262 2346 7.115663 CCATTAAAAACGTTCGATTTTCCATGT 59.884 33.333 14.27 0.00 31.62 3.21
2263 2347 5.881637 AAAAACGTTCGATTTTCCATGTG 57.118 34.783 0.00 0.00 0.00 3.21
2264 2348 2.611974 ACGTTCGATTTTCCATGTGC 57.388 45.000 0.00 0.00 0.00 4.57
2265 2349 2.151202 ACGTTCGATTTTCCATGTGCT 58.849 42.857 0.00 0.00 0.00 4.40
2266 2350 2.159627 ACGTTCGATTTTCCATGTGCTC 59.840 45.455 0.00 0.00 0.00 4.26
2267 2351 2.476185 CGTTCGATTTTCCATGTGCTCC 60.476 50.000 0.00 0.00 0.00 4.70
2268 2352 2.749621 GTTCGATTTTCCATGTGCTCCT 59.250 45.455 0.00 0.00 0.00 3.69
2269 2353 3.904800 TCGATTTTCCATGTGCTCCTA 57.095 42.857 0.00 0.00 0.00 2.94
2270 2354 3.531538 TCGATTTTCCATGTGCTCCTAC 58.468 45.455 0.00 0.00 0.00 3.18
2271 2355 2.614057 CGATTTTCCATGTGCTCCTACC 59.386 50.000 0.00 0.00 0.00 3.18
2272 2356 3.682718 CGATTTTCCATGTGCTCCTACCT 60.683 47.826 0.00 0.00 0.00 3.08
2273 2357 4.442893 CGATTTTCCATGTGCTCCTACCTA 60.443 45.833 0.00 0.00 0.00 3.08
2274 2358 5.625150 GATTTTCCATGTGCTCCTACCTAT 58.375 41.667 0.00 0.00 0.00 2.57
2275 2359 4.689612 TTTCCATGTGCTCCTACCTATC 57.310 45.455 0.00 0.00 0.00 2.08
2276 2360 2.239400 TCCATGTGCTCCTACCTATCG 58.761 52.381 0.00 0.00 0.00 2.92
2277 2361 1.964223 CCATGTGCTCCTACCTATCGT 59.036 52.381 0.00 0.00 0.00 3.73
2278 2362 2.029828 CCATGTGCTCCTACCTATCGTC 60.030 54.545 0.00 0.00 0.00 4.20
2279 2363 1.306148 TGTGCTCCTACCTATCGTCG 58.694 55.000 0.00 0.00 0.00 5.12
2280 2364 0.592148 GTGCTCCTACCTATCGTCGG 59.408 60.000 0.00 0.00 0.00 4.79
2281 2365 0.536687 TGCTCCTACCTATCGTCGGG 60.537 60.000 0.00 0.00 0.00 5.14
2282 2366 0.536915 GCTCCTACCTATCGTCGGGT 60.537 60.000 0.00 0.00 39.40 5.28
2283 2367 1.978454 CTCCTACCTATCGTCGGGTT 58.022 55.000 0.00 0.00 37.07 4.11
2284 2368 2.811873 GCTCCTACCTATCGTCGGGTTA 60.812 54.545 0.00 0.00 37.07 2.85
2285 2369 3.683802 CTCCTACCTATCGTCGGGTTAT 58.316 50.000 0.00 0.00 37.07 1.89
2286 2370 4.836825 CTCCTACCTATCGTCGGGTTATA 58.163 47.826 0.00 0.00 37.07 0.98
2287 2371 5.435291 CTCCTACCTATCGTCGGGTTATAT 58.565 45.833 0.00 0.00 37.07 0.86
2288 2372 6.560003 TCCTACCTATCGTCGGGTTATATA 57.440 41.667 0.00 0.00 37.07 0.86
2289 2373 6.349300 TCCTACCTATCGTCGGGTTATATAC 58.651 44.000 0.00 0.00 37.07 1.47
2290 2374 6.156949 TCCTACCTATCGTCGGGTTATATACT 59.843 42.308 0.00 0.00 37.07 2.12
2291 2375 6.825721 CCTACCTATCGTCGGGTTATATACTT 59.174 42.308 0.00 0.00 37.07 2.24
2292 2376 7.987458 CCTACCTATCGTCGGGTTATATACTTA 59.013 40.741 0.00 0.00 37.07 2.24
2341 2426 8.437360 TTGCGTATCATTTCATTGATAGAAGT 57.563 30.769 0.00 0.00 38.83 3.01
2608 2714 0.604243 CGATCCACAAAACCGGACCA 60.604 55.000 9.46 0.00 33.05 4.02
2613 2719 1.830847 ACAAAACCGGACCAAGGGC 60.831 57.895 9.46 0.00 0.00 5.19
3004 3150 4.802051 GCAGATCCAGGCCGCCAA 62.802 66.667 13.15 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 97 6.041069 ACTTGTCCTAGTATCATAGCCAACTC 59.959 42.308 0.00 0.00 0.00 3.01
228 232 5.104900 GGAGAAGTCCTTATAAGTTGCCTCA 60.105 44.000 11.50 0.00 40.17 3.86
273 278 6.828785 AGGAAAGCAACTTCTTCTAAGTTTGA 59.171 34.615 0.51 0.00 38.32 2.69
280 285 7.182817 TGCTATAGGAAAGCAACTTCTTCTA 57.817 36.000 1.04 0.00 46.57 2.10
344 357 8.899771 CCTTATTGGTATATTTGGACGAACTTT 58.100 33.333 0.00 0.00 0.00 2.66
368 381 5.725362 CGAGTTCTTCAAAACTAGATCCCT 58.275 41.667 0.00 0.00 39.55 4.20
513 528 2.680312 ATGTGGTCCTTGTCTCATCG 57.320 50.000 0.00 0.00 0.00 3.84
518 533 5.568620 AGAAAAGTATGTGGTCCTTGTCT 57.431 39.130 0.00 0.00 0.00 3.41
554 570 3.802685 GGTATAAAGAGTGCGTGTCATCC 59.197 47.826 0.00 0.00 0.00 3.51
574 592 1.196766 TGCATCTGAGCAGACCTGGT 61.197 55.000 0.00 0.00 44.89 4.00
575 593 0.035725 TTGCATCTGAGCAGACCTGG 60.036 55.000 1.71 0.00 46.54 4.45
717 741 9.322773 CATGAGATTATCGCCAACTATTATGAT 57.677 33.333 0.00 0.00 0.00 2.45
718 742 8.314021 ACATGAGATTATCGCCAACTATTATGA 58.686 33.333 0.00 0.00 0.00 2.15
719 743 8.385858 CACATGAGATTATCGCCAACTATTATG 58.614 37.037 0.00 0.00 0.00 1.90
720 744 8.097038 ACACATGAGATTATCGCCAACTATTAT 58.903 33.333 0.00 0.00 0.00 1.28
721 745 7.441836 ACACATGAGATTATCGCCAACTATTA 58.558 34.615 0.00 0.00 0.00 0.98
722 746 6.291377 ACACATGAGATTATCGCCAACTATT 58.709 36.000 0.00 0.00 0.00 1.73
723 747 5.858381 ACACATGAGATTATCGCCAACTAT 58.142 37.500 0.00 0.00 0.00 2.12
724 748 5.069119 AGACACATGAGATTATCGCCAACTA 59.931 40.000 0.00 0.00 0.00 2.24
725 749 4.122776 GACACATGAGATTATCGCCAACT 58.877 43.478 0.00 0.00 0.00 3.16
726 750 4.025396 CAGACACATGAGATTATCGCCAAC 60.025 45.833 0.00 0.00 0.00 3.77
727 751 4.122046 CAGACACATGAGATTATCGCCAA 58.878 43.478 0.00 0.00 0.00 4.52
728 752 3.493176 CCAGACACATGAGATTATCGCCA 60.493 47.826 0.00 0.00 0.00 5.69
729 753 3.062763 CCAGACACATGAGATTATCGCC 58.937 50.000 0.00 0.00 0.00 5.54
730 754 3.722147 ACCAGACACATGAGATTATCGC 58.278 45.455 0.00 0.00 0.00 4.58
731 755 4.747108 GGAACCAGACACATGAGATTATCG 59.253 45.833 0.00 0.00 0.00 2.92
732 756 5.674525 TGGAACCAGACACATGAGATTATC 58.325 41.667 0.00 0.00 0.00 1.75
733 757 5.397221 CCTGGAACCAGACACATGAGATTAT 60.397 44.000 20.79 0.00 46.30 1.28
734 758 4.080919 CCTGGAACCAGACACATGAGATTA 60.081 45.833 20.79 0.00 46.30 1.75
735 759 3.307975 CCTGGAACCAGACACATGAGATT 60.308 47.826 20.79 0.00 46.30 2.40
736 760 2.238144 CCTGGAACCAGACACATGAGAT 59.762 50.000 20.79 0.00 46.30 2.75
737 761 1.625315 CCTGGAACCAGACACATGAGA 59.375 52.381 20.79 0.00 46.30 3.27
738 762 1.339438 CCCTGGAACCAGACACATGAG 60.339 57.143 20.79 0.00 46.30 2.90
739 763 0.692476 CCCTGGAACCAGACACATGA 59.308 55.000 20.79 0.00 46.30 3.07
740 764 0.692476 TCCCTGGAACCAGACACATG 59.308 55.000 20.79 4.33 46.30 3.21
741 765 1.073923 GTTCCCTGGAACCAGACACAT 59.926 52.381 20.79 0.00 46.21 3.21
742 766 0.472471 GTTCCCTGGAACCAGACACA 59.528 55.000 20.79 1.00 46.21 3.72
743 767 3.324207 GTTCCCTGGAACCAGACAC 57.676 57.895 20.79 10.74 46.21 3.67
755 779 2.443255 AGTGATCAACAACAGGTTCCCT 59.557 45.455 0.00 0.00 37.72 4.20
756 780 2.814336 GAGTGATCAACAACAGGTTCCC 59.186 50.000 0.00 0.00 37.72 3.97
757 781 2.480419 CGAGTGATCAACAACAGGTTCC 59.520 50.000 0.00 0.00 37.72 3.62
758 782 3.059597 CACGAGTGATCAACAACAGGTTC 60.060 47.826 0.00 0.00 37.72 3.62
759 783 2.872245 CACGAGTGATCAACAACAGGTT 59.128 45.455 0.00 0.00 41.47 3.50
760 784 2.102420 TCACGAGTGATCAACAACAGGT 59.898 45.455 0.00 0.00 34.14 4.00
761 785 2.754472 TCACGAGTGATCAACAACAGG 58.246 47.619 0.00 0.00 34.14 4.00
762 786 5.163953 GGTTATCACGAGTGATCAACAACAG 60.164 44.000 20.46 0.00 46.57 3.16
763 787 4.688879 GGTTATCACGAGTGATCAACAACA 59.311 41.667 20.46 0.74 46.57 3.33
764 788 4.092968 GGGTTATCACGAGTGATCAACAAC 59.907 45.833 20.46 17.68 46.57 3.32
765 789 4.250464 GGGTTATCACGAGTGATCAACAA 58.750 43.478 20.46 8.24 46.57 2.83
766 790 3.369052 GGGGTTATCACGAGTGATCAACA 60.369 47.826 20.46 2.48 46.57 3.33
767 791 3.118738 AGGGGTTATCACGAGTGATCAAC 60.119 47.826 20.46 19.48 46.57 3.18
768 792 3.104512 AGGGGTTATCACGAGTGATCAA 58.895 45.455 20.46 11.41 46.57 2.57
769 793 2.693591 GAGGGGTTATCACGAGTGATCA 59.306 50.000 20.46 8.81 46.57 2.92
770 794 2.036089 GGAGGGGTTATCACGAGTGATC 59.964 54.545 20.46 8.79 46.57 2.92
772 796 1.006758 AGGAGGGGTTATCACGAGTGA 59.993 52.381 8.48 8.48 44.59 3.41
773 797 1.409427 GAGGAGGGGTTATCACGAGTG 59.591 57.143 0.00 0.00 0.00 3.51
774 798 1.688627 GGAGGAGGGGTTATCACGAGT 60.689 57.143 0.00 0.00 0.00 4.18
775 799 1.041437 GGAGGAGGGGTTATCACGAG 58.959 60.000 0.00 0.00 0.00 4.18
776 800 0.754217 CGGAGGAGGGGTTATCACGA 60.754 60.000 0.00 0.00 0.00 4.35
777 801 1.041447 ACGGAGGAGGGGTTATCACG 61.041 60.000 0.00 0.00 0.00 4.35
778 802 0.464452 CACGGAGGAGGGGTTATCAC 59.536 60.000 0.00 0.00 0.00 3.06
779 803 0.689745 CCACGGAGGAGGGGTTATCA 60.690 60.000 0.00 0.00 41.22 2.15
780 804 0.690077 ACCACGGAGGAGGGGTTATC 60.690 60.000 2.94 0.00 41.22 1.75
781 805 0.253020 AACCACGGAGGAGGGGTTAT 60.253 55.000 1.29 0.00 41.61 1.89
782 806 1.159184 AACCACGGAGGAGGGGTTA 59.841 57.895 1.29 0.00 41.61 2.85
783 807 2.122099 AACCACGGAGGAGGGGTT 60.122 61.111 2.94 0.00 41.22 4.11
784 808 2.928396 CAACCACGGAGGAGGGGT 60.928 66.667 2.94 0.00 41.22 4.95
785 809 2.465055 GAACAACCACGGAGGAGGGG 62.465 65.000 2.94 0.00 41.22 4.79
786 810 1.003718 GAACAACCACGGAGGAGGG 60.004 63.158 2.94 0.00 41.22 4.30
787 811 0.107831 TTGAACAACCACGGAGGAGG 59.892 55.000 2.94 0.00 41.22 4.30
788 812 1.961793 TTTGAACAACCACGGAGGAG 58.038 50.000 2.94 0.00 41.22 3.69
789 813 2.421751 TTTTGAACAACCACGGAGGA 57.578 45.000 2.94 0.00 41.22 3.71
790 814 3.726291 ATTTTTGAACAACCACGGAGG 57.274 42.857 0.00 0.00 45.67 4.30
791 815 5.176407 TGTATTTTTGAACAACCACGGAG 57.824 39.130 0.00 0.00 0.00 4.63
792 816 5.578005 TTGTATTTTTGAACAACCACGGA 57.422 34.783 0.00 0.00 30.88 4.69
793 817 6.836577 ATTTGTATTTTTGAACAACCACGG 57.163 33.333 0.00 0.00 35.43 4.94
910 940 1.195115 AGGCTCTATGGCGAGTTTCA 58.805 50.000 0.00 0.00 46.88 2.69
911 941 2.317530 AAGGCTCTATGGCGAGTTTC 57.682 50.000 0.00 0.00 46.88 2.78
912 942 2.789409 AAAGGCTCTATGGCGAGTTT 57.211 45.000 0.00 0.00 46.88 2.66
913 943 2.789409 AAAAGGCTCTATGGCGAGTT 57.211 45.000 0.00 0.00 46.88 3.01
914 944 5.746990 ATATAAAAGGCTCTATGGCGAGT 57.253 39.130 0.00 0.00 46.88 4.18
915 945 6.043411 GGTATATAAAAGGCTCTATGGCGAG 58.957 44.000 0.00 0.00 46.88 5.03
916 946 5.720041 AGGTATATAAAAGGCTCTATGGCGA 59.280 40.000 0.00 0.00 46.88 5.54
1237 1267 1.874345 AAGAGGGACGTGTAGCCGTG 61.874 60.000 0.00 0.00 41.98 4.94
1528 1561 0.684805 AGCTCCCCACTTAGGTCGAG 60.685 60.000 0.00 0.00 35.80 4.04
1757 1829 4.821589 CCGCCTCGAGCTGGTTCC 62.822 72.222 6.99 0.00 40.39 3.62
1809 1893 1.982395 CTCCAGCCCGTACCTGTCA 60.982 63.158 0.00 0.00 0.00 3.58
1865 1949 2.276116 ACAGAGCCCATGTCGACGT 61.276 57.895 11.62 7.97 0.00 4.34
1924 2008 1.115467 ATGGACGCCTCCTTCAGTAG 58.885 55.000 3.30 0.00 37.48 2.57
1926 2010 1.568504 TAATGGACGCCTCCTTCAGT 58.431 50.000 3.30 0.00 37.48 3.41
1953 2037 2.241281 TCAGATTACCGGGACCAGAA 57.759 50.000 6.32 0.00 0.00 3.02
1957 2041 6.059484 TGAATAATTTCAGATTACCGGGACC 58.941 40.000 6.32 0.00 36.94 4.46
1976 2060 0.756294 ACCATCGGTCGCCATGAATA 59.244 50.000 0.00 0.00 0.00 1.75
1998 2082 2.099431 GCTTCTCGTCAGCTGCTGG 61.099 63.158 27.79 14.02 34.15 4.85
1999 2083 1.079956 AGCTTCTCGTCAGCTGCTG 60.080 57.895 23.31 23.31 46.25 4.41
2007 2091 1.537135 GCAGATGGGTAGCTTCTCGTC 60.537 57.143 4.32 4.32 0.00 4.20
2009 2093 0.596083 CGCAGATGGGTAGCTTCTCG 60.596 60.000 0.00 0.00 0.00 4.04
2037 2121 2.403252 ATAGGCGGTTGACAAGAAGG 57.597 50.000 0.00 0.00 0.00 3.46
2051 2135 2.082231 TCCATCTCGTACGCTATAGGC 58.918 52.381 11.24 0.00 37.64 3.93
2052 2136 3.001431 CGATCCATCTCGTACGCTATAGG 59.999 52.174 11.24 8.68 34.00 2.57
2053 2137 3.864003 TCGATCCATCTCGTACGCTATAG 59.136 47.826 11.24 2.53 39.62 1.31
2054 2138 3.615937 GTCGATCCATCTCGTACGCTATA 59.384 47.826 11.24 0.00 39.62 1.31
2055 2139 2.415857 GTCGATCCATCTCGTACGCTAT 59.584 50.000 11.24 3.22 39.62 2.97
2056 2140 1.797046 GTCGATCCATCTCGTACGCTA 59.203 52.381 11.24 0.49 39.62 4.26
2057 2141 0.587285 GTCGATCCATCTCGTACGCT 59.413 55.000 11.24 0.00 39.62 5.07
2058 2142 0.721811 CGTCGATCCATCTCGTACGC 60.722 60.000 11.24 0.00 39.62 4.42
2059 2143 0.580578 ACGTCGATCCATCTCGTACG 59.419 55.000 9.53 9.53 42.38 3.67
2060 2144 2.373269 CAACGTCGATCCATCTCGTAC 58.627 52.381 0.00 0.00 39.62 3.67
2061 2145 1.332686 CCAACGTCGATCCATCTCGTA 59.667 52.381 0.00 0.00 39.62 3.43
2062 2146 0.100682 CCAACGTCGATCCATCTCGT 59.899 55.000 0.00 0.00 39.62 4.18
2063 2147 1.209275 GCCAACGTCGATCCATCTCG 61.209 60.000 0.00 0.00 39.99 4.04
2064 2148 0.179111 TGCCAACGTCGATCCATCTC 60.179 55.000 0.00 0.00 0.00 2.75
2065 2149 0.249120 TTGCCAACGTCGATCCATCT 59.751 50.000 0.00 0.00 0.00 2.90
2066 2150 1.083489 TTTGCCAACGTCGATCCATC 58.917 50.000 0.00 0.00 0.00 3.51
2067 2151 1.529226 TTTTGCCAACGTCGATCCAT 58.471 45.000 0.00 0.00 0.00 3.41
2068 2152 1.529226 ATTTTGCCAACGTCGATCCA 58.471 45.000 0.00 0.00 0.00 3.41
2069 2153 2.629639 AATTTTGCCAACGTCGATCC 57.370 45.000 0.00 0.00 0.00 3.36
2070 2154 6.626199 AATTTAATTTTGCCAACGTCGATC 57.374 33.333 0.00 0.00 0.00 3.69
2071 2155 6.750039 CCTAATTTAATTTTGCCAACGTCGAT 59.250 34.615 0.00 0.00 0.00 3.59
2072 2156 6.072618 TCCTAATTTAATTTTGCCAACGTCGA 60.073 34.615 0.00 0.00 0.00 4.20
2073 2157 6.087522 TCCTAATTTAATTTTGCCAACGTCG 58.912 36.000 0.00 0.00 0.00 5.12
2074 2158 7.876896 TTCCTAATTTAATTTTGCCAACGTC 57.123 32.000 0.00 0.00 0.00 4.34
2075 2159 8.840833 AATTCCTAATTTAATTTTGCCAACGT 57.159 26.923 0.00 0.00 0.00 3.99
2076 2160 9.540431 CAAATTCCTAATTTAATTTTGCCAACG 57.460 29.630 0.00 0.00 38.97 4.10
2086 2170 9.649316 TCCGGGTTATCAAATTCCTAATTTAAT 57.351 29.630 0.00 0.00 38.97 1.40
2087 2171 9.476928 TTCCGGGTTATCAAATTCCTAATTTAA 57.523 29.630 0.00 0.00 38.97 1.52
2088 2172 9.476928 TTTCCGGGTTATCAAATTCCTAATTTA 57.523 29.630 0.00 0.00 38.97 1.40
2089 2173 7.964666 TTCCGGGTTATCAAATTCCTAATTT 57.035 32.000 0.00 0.00 41.57 1.82
2090 2174 7.417456 GCTTTCCGGGTTATCAAATTCCTAATT 60.417 37.037 0.00 0.00 0.00 1.40
2091 2175 6.040504 GCTTTCCGGGTTATCAAATTCCTAAT 59.959 38.462 0.00 0.00 0.00 1.73
2092 2176 5.358725 GCTTTCCGGGTTATCAAATTCCTAA 59.641 40.000 0.00 0.00 0.00 2.69
2093 2177 4.885325 GCTTTCCGGGTTATCAAATTCCTA 59.115 41.667 0.00 0.00 0.00 2.94
2094 2178 3.699538 GCTTTCCGGGTTATCAAATTCCT 59.300 43.478 0.00 0.00 0.00 3.36
2095 2179 3.699538 AGCTTTCCGGGTTATCAAATTCC 59.300 43.478 0.00 0.00 0.00 3.01
2096 2180 4.398044 TGAGCTTTCCGGGTTATCAAATTC 59.602 41.667 0.00 0.00 0.00 2.17
2097 2181 4.340617 TGAGCTTTCCGGGTTATCAAATT 58.659 39.130 0.00 0.00 0.00 1.82
2098 2182 3.947834 CTGAGCTTTCCGGGTTATCAAAT 59.052 43.478 0.00 0.00 0.00 2.32
2099 2183 3.343617 CTGAGCTTTCCGGGTTATCAAA 58.656 45.455 0.00 0.00 0.00 2.69
2100 2184 2.355716 CCTGAGCTTTCCGGGTTATCAA 60.356 50.000 0.00 0.00 0.00 2.57
2101 2185 1.209504 CCTGAGCTTTCCGGGTTATCA 59.790 52.381 0.00 0.00 0.00 2.15
2102 2186 1.209747 ACCTGAGCTTTCCGGGTTATC 59.790 52.381 0.00 0.00 40.21 1.75
2103 2187 1.286248 ACCTGAGCTTTCCGGGTTAT 58.714 50.000 0.00 0.00 40.21 1.89
2104 2188 1.551883 GTACCTGAGCTTTCCGGGTTA 59.448 52.381 9.53 0.00 42.83 2.85
2105 2189 0.323957 GTACCTGAGCTTTCCGGGTT 59.676 55.000 9.53 0.00 42.83 4.11
2106 2190 1.885163 CGTACCTGAGCTTTCCGGGT 61.885 60.000 0.00 9.24 44.86 5.28
2107 2191 1.153628 CGTACCTGAGCTTTCCGGG 60.154 63.158 0.00 0.00 36.16 5.73
2108 2192 0.179134 CTCGTACCTGAGCTTTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
2109 2193 0.179134 CCTCGTACCTGAGCTTTCCG 60.179 60.000 0.00 0.00 34.56 4.30
2110 2194 0.175989 CCCTCGTACCTGAGCTTTCC 59.824 60.000 0.00 0.00 34.56 3.13
2111 2195 0.460459 GCCCTCGTACCTGAGCTTTC 60.460 60.000 0.00 0.00 34.56 2.62
2112 2196 1.192146 TGCCCTCGTACCTGAGCTTT 61.192 55.000 0.00 0.00 34.56 3.51
2113 2197 0.978146 ATGCCCTCGTACCTGAGCTT 60.978 55.000 0.00 0.00 34.56 3.74
2114 2198 1.381872 ATGCCCTCGTACCTGAGCT 60.382 57.895 0.00 0.00 34.56 4.09
2115 2199 1.227380 CATGCCCTCGTACCTGAGC 60.227 63.158 0.00 0.00 34.56 4.26
2116 2200 1.443407 CCATGCCCTCGTACCTGAG 59.557 63.158 0.00 0.00 35.70 3.35
2117 2201 2.731571 GCCATGCCCTCGTACCTGA 61.732 63.158 0.00 0.00 0.00 3.86
2118 2202 2.203070 GCCATGCCCTCGTACCTG 60.203 66.667 0.00 0.00 0.00 4.00
2119 2203 1.847798 TTTGCCATGCCCTCGTACCT 61.848 55.000 0.00 0.00 0.00 3.08
2120 2204 0.751643 ATTTGCCATGCCCTCGTACC 60.752 55.000 0.00 0.00 0.00 3.34
2121 2205 0.663153 GATTTGCCATGCCCTCGTAC 59.337 55.000 0.00 0.00 0.00 3.67
2122 2206 0.813610 CGATTTGCCATGCCCTCGTA 60.814 55.000 0.00 0.00 0.00 3.43
2123 2207 2.114670 CGATTTGCCATGCCCTCGT 61.115 57.895 0.00 0.00 0.00 4.18
2124 2208 1.168407 ATCGATTTGCCATGCCCTCG 61.168 55.000 0.00 0.00 0.00 4.63
2125 2209 1.808945 CTATCGATTTGCCATGCCCTC 59.191 52.381 1.71 0.00 0.00 4.30
2126 2210 1.143684 ACTATCGATTTGCCATGCCCT 59.856 47.619 1.71 0.00 0.00 5.19
2127 2211 1.609208 ACTATCGATTTGCCATGCCC 58.391 50.000 1.71 0.00 0.00 5.36
2128 2212 3.715628 AAACTATCGATTTGCCATGCC 57.284 42.857 1.71 0.00 0.00 4.40
2129 2213 3.725740 CGAAAACTATCGATTTGCCATGC 59.274 43.478 1.71 0.00 45.48 4.06
2130 2214 5.155509 TCGAAAACTATCGATTTGCCATG 57.844 39.130 1.71 0.00 46.12 3.66
2142 2226 8.700644 GCGTCACTATATTTCATCGAAAACTAT 58.299 33.333 0.00 0.00 35.11 2.12
2143 2227 7.703197 TGCGTCACTATATTTCATCGAAAACTA 59.297 33.333 0.00 0.00 35.11 2.24
2144 2228 6.533723 TGCGTCACTATATTTCATCGAAAACT 59.466 34.615 0.00 0.00 35.11 2.66
2145 2229 6.701937 TGCGTCACTATATTTCATCGAAAAC 58.298 36.000 0.00 0.00 35.11 2.43
2146 2230 6.895607 TGCGTCACTATATTTCATCGAAAA 57.104 33.333 0.00 0.00 35.11 2.29
2147 2231 6.895607 TTGCGTCACTATATTTCATCGAAA 57.104 33.333 0.00 0.00 35.94 3.46
2148 2232 6.895607 TTTGCGTCACTATATTTCATCGAA 57.104 33.333 0.00 0.00 0.00 3.71
2149 2233 6.895607 TTTTGCGTCACTATATTTCATCGA 57.104 33.333 0.00 0.00 0.00 3.59
2150 2234 7.112009 CCATTTTTGCGTCACTATATTTCATCG 59.888 37.037 0.00 0.00 0.00 3.84
2151 2235 7.096477 GCCATTTTTGCGTCACTATATTTCATC 60.096 37.037 0.00 0.00 0.00 2.92
2152 2236 6.697019 GCCATTTTTGCGTCACTATATTTCAT 59.303 34.615 0.00 0.00 0.00 2.57
2153 2237 6.033341 GCCATTTTTGCGTCACTATATTTCA 58.967 36.000 0.00 0.00 0.00 2.69
2154 2238 6.033341 TGCCATTTTTGCGTCACTATATTTC 58.967 36.000 0.00 0.00 0.00 2.17
2155 2239 5.960113 TGCCATTTTTGCGTCACTATATTT 58.040 33.333 0.00 0.00 0.00 1.40
2156 2240 5.574891 TGCCATTTTTGCGTCACTATATT 57.425 34.783 0.00 0.00 0.00 1.28
2157 2241 5.105957 TGTTGCCATTTTTGCGTCACTATAT 60.106 36.000 0.00 0.00 0.00 0.86
2158 2242 4.216472 TGTTGCCATTTTTGCGTCACTATA 59.784 37.500 0.00 0.00 0.00 1.31
2159 2243 3.005261 TGTTGCCATTTTTGCGTCACTAT 59.995 39.130 0.00 0.00 0.00 2.12
2160 2244 2.359214 TGTTGCCATTTTTGCGTCACTA 59.641 40.909 0.00 0.00 0.00 2.74
2161 2245 1.135915 TGTTGCCATTTTTGCGTCACT 59.864 42.857 0.00 0.00 0.00 3.41
2162 2246 1.565305 TGTTGCCATTTTTGCGTCAC 58.435 45.000 0.00 0.00 0.00 3.67
2163 2247 2.133553 CATGTTGCCATTTTTGCGTCA 58.866 42.857 0.00 0.00 0.00 4.35
2164 2248 2.155539 GTCATGTTGCCATTTTTGCGTC 59.844 45.455 0.00 0.00 0.00 5.19
2165 2249 2.134346 GTCATGTTGCCATTTTTGCGT 58.866 42.857 0.00 0.00 0.00 5.24
2166 2250 2.133553 TGTCATGTTGCCATTTTTGCG 58.866 42.857 0.00 0.00 0.00 4.85
2167 2251 3.560896 AGTTGTCATGTTGCCATTTTTGC 59.439 39.130 0.00 0.00 0.00 3.68
2168 2252 5.524646 AGAAGTTGTCATGTTGCCATTTTTG 59.475 36.000 0.00 0.00 0.00 2.44
2169 2253 5.673514 AGAAGTTGTCATGTTGCCATTTTT 58.326 33.333 0.00 0.00 0.00 1.94
2170 2254 5.280654 AGAAGTTGTCATGTTGCCATTTT 57.719 34.783 0.00 0.00 0.00 1.82
2171 2255 4.942761 AGAAGTTGTCATGTTGCCATTT 57.057 36.364 0.00 0.00 0.00 2.32
2172 2256 4.624015 CAAGAAGTTGTCATGTTGCCATT 58.376 39.130 0.00 0.00 0.00 3.16
2173 2257 3.553508 GCAAGAAGTTGTCATGTTGCCAT 60.554 43.478 2.84 0.00 35.36 4.40
2174 2258 2.223782 GCAAGAAGTTGTCATGTTGCCA 60.224 45.455 2.84 0.00 35.36 4.92
2175 2259 2.035066 AGCAAGAAGTTGTCATGTTGCC 59.965 45.455 9.11 0.00 40.93 4.52
2176 2260 3.360249 AGCAAGAAGTTGTCATGTTGC 57.640 42.857 5.52 5.52 40.45 4.17
2177 2261 6.498304 ACTTAAGCAAGAAGTTGTCATGTTG 58.502 36.000 1.29 0.00 33.25 3.33
2178 2262 6.699575 ACTTAAGCAAGAAGTTGTCATGTT 57.300 33.333 1.29 0.00 33.25 2.71
2179 2263 6.699575 AACTTAAGCAAGAAGTTGTCATGT 57.300 33.333 1.29 0.00 43.73 3.21
2180 2264 9.683069 AATAAACTTAAGCAAGAAGTTGTCATG 57.317 29.630 1.29 0.00 44.43 3.07
2200 2284 6.687604 ACACAAGGATGGCAAGTTAATAAAC 58.312 36.000 0.00 0.00 35.72 2.01
2201 2285 6.491745 TGACACAAGGATGGCAAGTTAATAAA 59.508 34.615 0.00 0.00 33.52 1.40
2202 2286 6.007076 TGACACAAGGATGGCAAGTTAATAA 58.993 36.000 0.00 0.00 33.52 1.40
2203 2287 5.414454 GTGACACAAGGATGGCAAGTTAATA 59.586 40.000 0.00 0.00 40.05 0.98
2204 2288 4.218417 GTGACACAAGGATGGCAAGTTAAT 59.782 41.667 0.00 0.00 40.05 1.40
2205 2289 3.568007 GTGACACAAGGATGGCAAGTTAA 59.432 43.478 0.00 0.00 40.05 2.01
2206 2290 3.146066 GTGACACAAGGATGGCAAGTTA 58.854 45.455 0.00 0.00 40.05 2.24
2207 2291 1.956477 GTGACACAAGGATGGCAAGTT 59.044 47.619 0.00 0.00 40.05 2.66
2208 2292 1.143684 AGTGACACAAGGATGGCAAGT 59.856 47.619 8.59 0.00 40.05 3.16
2209 2293 1.901591 AGTGACACAAGGATGGCAAG 58.098 50.000 8.59 0.00 40.05 4.01
2210 2294 2.637382 TCTAGTGACACAAGGATGGCAA 59.363 45.455 8.59 0.00 40.05 4.52
2211 2295 2.256306 TCTAGTGACACAAGGATGGCA 58.744 47.619 8.59 0.00 34.28 4.92
2212 2296 3.334583 TTCTAGTGACACAAGGATGGC 57.665 47.619 8.59 0.00 0.00 4.40
2213 2297 4.095483 GCAATTCTAGTGACACAAGGATGG 59.905 45.833 8.59 0.00 0.00 3.51
2214 2298 4.095483 GGCAATTCTAGTGACACAAGGATG 59.905 45.833 8.59 1.09 0.00 3.51
2215 2299 4.263462 TGGCAATTCTAGTGACACAAGGAT 60.263 41.667 8.59 0.00 0.00 3.24
2216 2300 3.072330 TGGCAATTCTAGTGACACAAGGA 59.928 43.478 8.59 0.00 0.00 3.36
2217 2301 3.411446 TGGCAATTCTAGTGACACAAGG 58.589 45.455 8.59 0.00 0.00 3.61
2218 2302 5.633830 AATGGCAATTCTAGTGACACAAG 57.366 39.130 8.59 0.00 36.66 3.16
2219 2303 7.517614 TTTAATGGCAATTCTAGTGACACAA 57.482 32.000 8.59 0.00 36.66 3.33
2220 2304 7.517614 TTTTAATGGCAATTCTAGTGACACA 57.482 32.000 8.59 0.00 36.66 3.72
2221 2305 7.060633 CGTTTTTAATGGCAATTCTAGTGACAC 59.939 37.037 0.00 0.00 36.66 3.67
2222 2306 7.081349 CGTTTTTAATGGCAATTCTAGTGACA 58.919 34.615 0.00 0.00 38.70 3.58
2223 2307 7.081976 ACGTTTTTAATGGCAATTCTAGTGAC 58.918 34.615 0.00 0.00 0.00 3.67
2224 2308 7.209471 ACGTTTTTAATGGCAATTCTAGTGA 57.791 32.000 0.00 0.00 0.00 3.41
2225 2309 7.201232 CGAACGTTTTTAATGGCAATTCTAGTG 60.201 37.037 0.46 0.00 0.00 2.74
2226 2310 6.799925 CGAACGTTTTTAATGGCAATTCTAGT 59.200 34.615 0.46 0.00 0.00 2.57
2227 2311 7.018826 TCGAACGTTTTTAATGGCAATTCTAG 58.981 34.615 0.46 0.00 0.00 2.43
2228 2312 6.900189 TCGAACGTTTTTAATGGCAATTCTA 58.100 32.000 0.46 0.00 0.00 2.10
2229 2313 5.764131 TCGAACGTTTTTAATGGCAATTCT 58.236 33.333 0.46 0.00 0.00 2.40
2230 2314 6.626199 ATCGAACGTTTTTAATGGCAATTC 57.374 33.333 0.46 0.00 0.00 2.17
2231 2315 7.414814 AAATCGAACGTTTTTAATGGCAATT 57.585 28.000 0.46 0.00 0.00 2.32
2232 2316 7.359681 GGAAAATCGAACGTTTTTAATGGCAAT 60.360 33.333 0.46 0.00 30.17 3.56
2233 2317 6.074249 GGAAAATCGAACGTTTTTAATGGCAA 60.074 34.615 0.46 0.00 30.17 4.52
2234 2318 5.402867 GGAAAATCGAACGTTTTTAATGGCA 59.597 36.000 0.46 0.00 30.17 4.92
2235 2319 5.402867 TGGAAAATCGAACGTTTTTAATGGC 59.597 36.000 0.46 4.33 30.17 4.40
2236 2320 6.994868 TGGAAAATCGAACGTTTTTAATGG 57.005 33.333 0.46 0.00 30.17 3.16
2237 2321 7.944120 CACATGGAAAATCGAACGTTTTTAATG 59.056 33.333 21.01 21.01 33.25 1.90
2238 2322 7.358848 GCACATGGAAAATCGAACGTTTTTAAT 60.359 33.333 0.46 9.21 30.17 1.40
2239 2323 6.074782 GCACATGGAAAATCGAACGTTTTTAA 60.075 34.615 0.46 7.80 30.17 1.52
2240 2324 5.399892 GCACATGGAAAATCGAACGTTTTTA 59.600 36.000 0.46 0.00 30.17 1.52
2241 2325 4.208253 GCACATGGAAAATCGAACGTTTTT 59.792 37.500 0.46 13.29 31.95 1.94
2242 2326 3.733727 GCACATGGAAAATCGAACGTTTT 59.266 39.130 0.46 0.00 0.00 2.43
2243 2327 3.004315 AGCACATGGAAAATCGAACGTTT 59.996 39.130 0.46 0.00 0.00 3.60
2244 2328 2.552315 AGCACATGGAAAATCGAACGTT 59.448 40.909 0.00 0.00 0.00 3.99
2245 2329 2.151202 AGCACATGGAAAATCGAACGT 58.849 42.857 0.00 0.00 0.00 3.99
2246 2330 2.476185 GGAGCACATGGAAAATCGAACG 60.476 50.000 0.00 0.00 0.00 3.95
2247 2331 2.749621 AGGAGCACATGGAAAATCGAAC 59.250 45.455 0.00 0.00 0.00 3.95
2248 2332 3.071874 AGGAGCACATGGAAAATCGAA 57.928 42.857 0.00 0.00 0.00 3.71
2249 2333 2.787473 AGGAGCACATGGAAAATCGA 57.213 45.000 0.00 0.00 0.00 3.59
2250 2334 2.614057 GGTAGGAGCACATGGAAAATCG 59.386 50.000 0.00 0.00 0.00 3.34
2251 2335 3.891049 AGGTAGGAGCACATGGAAAATC 58.109 45.455 0.00 0.00 0.00 2.17
2252 2336 5.625150 GATAGGTAGGAGCACATGGAAAAT 58.375 41.667 0.00 0.00 0.00 1.82
2253 2337 4.442893 CGATAGGTAGGAGCACATGGAAAA 60.443 45.833 0.00 0.00 0.00 2.29
2254 2338 3.069586 CGATAGGTAGGAGCACATGGAAA 59.930 47.826 0.00 0.00 0.00 3.13
2255 2339 2.628178 CGATAGGTAGGAGCACATGGAA 59.372 50.000 0.00 0.00 0.00 3.53
2256 2340 2.239400 CGATAGGTAGGAGCACATGGA 58.761 52.381 0.00 0.00 0.00 3.41
2257 2341 1.964223 ACGATAGGTAGGAGCACATGG 59.036 52.381 0.00 0.00 43.77 3.66
2258 2342 2.350868 CGACGATAGGTAGGAGCACATG 60.351 54.545 0.00 0.00 43.77 3.21
2259 2343 1.880675 CGACGATAGGTAGGAGCACAT 59.119 52.381 0.00 0.00 43.77 3.21
2260 2344 1.306148 CGACGATAGGTAGGAGCACA 58.694 55.000 0.00 0.00 43.77 4.57
2261 2345 0.592148 CCGACGATAGGTAGGAGCAC 59.408 60.000 0.00 0.00 43.54 4.40
2262 2346 0.536687 CCCGACGATAGGTAGGAGCA 60.537 60.000 0.00 0.00 43.54 4.26
2263 2347 0.536915 ACCCGACGATAGGTAGGAGC 60.537 60.000 0.00 0.00 43.54 4.70
2264 2348 1.978454 AACCCGACGATAGGTAGGAG 58.022 55.000 0.00 0.00 43.54 3.69
2265 2349 3.795688 ATAACCCGACGATAGGTAGGA 57.204 47.619 0.00 0.00 43.54 2.94
2266 2350 6.352516 AGTATATAACCCGACGATAGGTAGG 58.647 44.000 0.00 0.00 40.79 3.18
2267 2351 7.856145 AAGTATATAACCCGACGATAGGTAG 57.144 40.000 0.00 0.00 43.77 3.18
2268 2352 9.905713 AATAAGTATATAACCCGACGATAGGTA 57.094 33.333 0.00 0.00 43.77 3.08
2269 2353 8.814038 AATAAGTATATAACCCGACGATAGGT 57.186 34.615 0.00 0.00 43.77 3.08
2341 2426 7.778382 TGCTGTATCCTATGTACTCACTCTTAA 59.222 37.037 0.00 0.00 0.00 1.85
2608 2714 1.931007 GAGCATCAGGGGAAGCCCTT 61.931 60.000 2.01 0.00 38.48 3.95
2613 2719 0.826715 TCTTCGAGCATCAGGGGAAG 59.173 55.000 0.00 0.00 36.36 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.