Multiple sequence alignment - TraesCS3B01G072600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G072600 chr3B 100.000 3455 0 0 1 3455 43818109 43821563 0.000000e+00 6381.0
1 TraesCS3B01G072600 chr3B 86.073 1594 191 17 1871 3455 43850362 43851933 0.000000e+00 1685.0
2 TraesCS3B01G072600 chr3B 81.919 1886 322 15 1575 3453 43933173 43935046 0.000000e+00 1576.0
3 TraesCS3B01G072600 chr3B 81.919 1886 322 15 1575 3453 44038652 44040525 0.000000e+00 1576.0
4 TraesCS3B01G072600 chr3B 80.764 1440 251 19 458 1878 43843677 43845109 0.000000e+00 1101.0
5 TraesCS3B01G072600 chr3D 93.819 3009 172 8 458 3455 26271002 26274007 0.000000e+00 4514.0
6 TraesCS3B01G072600 chr3D 84.080 3015 429 33 465 3455 26290709 26293696 0.000000e+00 2861.0
7 TraesCS3B01G072600 chr3D 82.254 3026 482 40 458 3453 26300753 26303753 0.000000e+00 2562.0
8 TraesCS3B01G072600 chr3D 94.386 1603 87 2 1195 2795 26230235 26228634 0.000000e+00 2459.0
9 TraesCS3B01G072600 chr3D 81.260 2999 505 41 482 3455 26222568 26219602 0.000000e+00 2372.0
10 TraesCS3B01G072600 chr3D 89.722 360 31 5 3096 3455 26228630 26228277 4.060000e-124 455.0
11 TraesCS3B01G072600 chr3D 86.517 89 12 0 59 147 66523375 66523463 7.890000e-17 99.0
12 TraesCS3B01G072600 chr3A 93.278 3005 188 9 458 3455 36246378 36249375 0.000000e+00 4418.0
13 TraesCS3B01G072600 chr3A 83.035 1061 168 10 2398 3455 36480710 36479659 0.000000e+00 952.0
14 TraesCS3B01G072600 chr4D 83.621 3016 451 36 458 3455 1398106 1401096 0.000000e+00 2793.0
15 TraesCS3B01G072600 chrUn 82.023 2976 475 47 507 3455 245875198 245872256 0.000000e+00 2477.0
16 TraesCS3B01G072600 chrUn 82.054 2970 473 47 507 3449 260283721 260286657 0.000000e+00 2477.0
17 TraesCS3B01G072600 chr6D 81.878 2908 471 45 569 3449 387399 390277 0.000000e+00 2399.0
18 TraesCS3B01G072600 chr6D 85.870 92 12 1 58 148 105560458 105560549 2.840000e-16 97.1
19 TraesCS3B01G072600 chr6A 89.412 85 9 0 63 147 405656223 405656139 1.310000e-19 108.0
20 TraesCS3B01G072600 chr2B 87.778 90 11 0 69 158 774661964 774662053 4.720000e-19 106.0
21 TraesCS3B01G072600 chr2A 88.235 85 10 0 63 147 752101556 752101640 6.100000e-18 102.0
22 TraesCS3B01G072600 chr1A 86.022 93 12 1 56 147 320485581 320485673 7.890000e-17 99.0
23 TraesCS3B01G072600 chr5A 85.263 95 13 1 54 147 526875306 526875400 2.840000e-16 97.1
24 TraesCS3B01G072600 chr1B 84.848 99 11 4 53 147 406341748 406341846 2.840000e-16 97.1
25 TraesCS3B01G072600 chr6B 85.556 90 13 0 62 151 646750144 646750055 1.020000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G072600 chr3B 43818109 43821563 3454 False 6381 6381 100.000 1 3455 1 chr3B.!!$F1 3454
1 TraesCS3B01G072600 chr3B 43850362 43851933 1571 False 1685 1685 86.073 1871 3455 1 chr3B.!!$F3 1584
2 TraesCS3B01G072600 chr3B 43933173 43935046 1873 False 1576 1576 81.919 1575 3453 1 chr3B.!!$F4 1878
3 TraesCS3B01G072600 chr3B 44038652 44040525 1873 False 1576 1576 81.919 1575 3453 1 chr3B.!!$F5 1878
4 TraesCS3B01G072600 chr3B 43843677 43845109 1432 False 1101 1101 80.764 458 1878 1 chr3B.!!$F2 1420
5 TraesCS3B01G072600 chr3D 26271002 26274007 3005 False 4514 4514 93.819 458 3455 1 chr3D.!!$F1 2997
6 TraesCS3B01G072600 chr3D 26290709 26293696 2987 False 2861 2861 84.080 465 3455 1 chr3D.!!$F2 2990
7 TraesCS3B01G072600 chr3D 26300753 26303753 3000 False 2562 2562 82.254 458 3453 1 chr3D.!!$F3 2995
8 TraesCS3B01G072600 chr3D 26219602 26222568 2966 True 2372 2372 81.260 482 3455 1 chr3D.!!$R1 2973
9 TraesCS3B01G072600 chr3D 26228277 26230235 1958 True 1457 2459 92.054 1195 3455 2 chr3D.!!$R2 2260
10 TraesCS3B01G072600 chr3A 36246378 36249375 2997 False 4418 4418 93.278 458 3455 1 chr3A.!!$F1 2997
11 TraesCS3B01G072600 chr3A 36479659 36480710 1051 True 952 952 83.035 2398 3455 1 chr3A.!!$R1 1057
12 TraesCS3B01G072600 chr4D 1398106 1401096 2990 False 2793 2793 83.621 458 3455 1 chr4D.!!$F1 2997
13 TraesCS3B01G072600 chrUn 245872256 245875198 2942 True 2477 2477 82.023 507 3455 1 chrUn.!!$R1 2948
14 TraesCS3B01G072600 chrUn 260283721 260286657 2936 False 2477 2477 82.054 507 3449 1 chrUn.!!$F1 2942
15 TraesCS3B01G072600 chr6D 387399 390277 2878 False 2399 2399 81.878 569 3449 1 chr6D.!!$F1 2880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
381 382 0.108709 TGCATGAAAAATCTGGGCGC 60.109 50.0 0.00 0.0 0.0 6.53 F
383 384 0.179103 CATGAAAAATCTGGGCGCCC 60.179 55.0 39.40 39.4 0.0 6.13 F
691 699 0.326595 TCTGCAATTGGGAAGGCGTA 59.673 50.0 7.72 0.0 0.0 4.42 F
710 718 0.764890 ACTGTGCAGGTTGAAGGCTA 59.235 50.0 4.11 0.0 0.0 3.93 F
2359 2389 0.111639 GGGGCTTTGTGGTGGAGTAA 59.888 55.0 0.00 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 1568 1.000955 GGTACATGCCCTGATAGACGG 59.999 57.143 0.00 0.0 0.00 4.79 R
1755 1781 1.066358 CCGGTGAAGTAGTTTCCTCCC 60.066 57.143 0.00 0.0 34.77 4.30 R
2152 2178 2.321213 GGCCGCTTATGTTGCCTAG 58.679 57.895 0.00 0.0 40.77 3.02 R
2452 2482 3.244875 ACCATAGCAAGTGACACCATTCA 60.245 43.478 0.84 0.0 0.00 2.57 R
3262 3326 2.376518 ACCACCCCCTGCATATTCTATG 59.623 50.000 0.00 0.0 0.00 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.474920 AAACATGTTTATGTGTCATAAAAGTGG 57.525 29.630 22.10 8.59 46.54 4.00
38 39 8.177119 ACATGTTTATGTGTCATAAAAGTGGT 57.823 30.769 13.94 9.03 45.54 4.16
39 40 9.290988 ACATGTTTATGTGTCATAAAAGTGGTA 57.709 29.630 13.94 2.08 45.54 3.25
40 41 9.773328 CATGTTTATGTGTCATAAAAGTGGTAG 57.227 33.333 13.94 1.63 0.00 3.18
41 42 8.911918 TGTTTATGTGTCATAAAAGTGGTAGT 57.088 30.769 13.94 0.00 0.00 2.73
42 43 9.999660 TGTTTATGTGTCATAAAAGTGGTAGTA 57.000 29.630 13.94 0.00 0.00 1.82
47 48 9.733556 ATGTGTCATAAAAGTGGTAGTAATCAA 57.266 29.630 0.00 0.00 0.00 2.57
48 49 9.733556 TGTGTCATAAAAGTGGTAGTAATCAAT 57.266 29.630 0.00 0.00 0.00 2.57
51 52 9.916397 GTCATAAAAGTGGTAGTAATCAATTCG 57.084 33.333 0.00 0.00 0.00 3.34
52 53 9.661563 TCATAAAAGTGGTAGTAATCAATTCGT 57.338 29.630 0.00 0.00 0.00 3.85
69 70 8.826293 TCAATTCGTATTTAAAAATACCCCCT 57.174 30.769 16.23 1.53 44.92 4.79
70 71 9.257428 TCAATTCGTATTTAAAAATACCCCCTT 57.743 29.630 16.23 6.05 44.92 3.95
71 72 9.524106 CAATTCGTATTTAAAAATACCCCCTTC 57.476 33.333 16.23 0.00 44.92 3.46
72 73 6.923928 TCGTATTTAAAAATACCCCCTTCG 57.076 37.500 16.23 6.55 44.92 3.79
73 74 6.413892 TCGTATTTAAAAATACCCCCTTCGT 58.586 36.000 16.23 0.00 44.92 3.85
74 75 7.560368 TCGTATTTAAAAATACCCCCTTCGTA 58.440 34.615 16.23 0.00 44.92 3.43
75 76 8.043710 TCGTATTTAAAAATACCCCCTTCGTAA 58.956 33.333 16.23 0.00 44.92 3.18
76 77 8.672815 CGTATTTAAAAATACCCCCTTCGTAAA 58.327 33.333 16.23 0.00 44.92 2.01
78 79 8.882557 ATTTAAAAATACCCCCTTCGTAAAGA 57.117 30.769 0.00 0.00 34.14 2.52
79 80 8.703378 TTTAAAAATACCCCCTTCGTAAAGAA 57.297 30.769 0.00 0.00 34.14 2.52
80 81 8.703378 TTAAAAATACCCCCTTCGTAAAGAAA 57.297 30.769 0.00 0.00 38.57 2.52
81 82 7.786046 AAAAATACCCCCTTCGTAAAGAAAT 57.214 32.000 0.00 0.00 38.57 2.17
82 83 8.882557 AAAAATACCCCCTTCGTAAAGAAATA 57.117 30.769 0.00 0.00 38.57 1.40
83 84 9.483489 AAAAATACCCCCTTCGTAAAGAAATAT 57.517 29.630 0.00 0.00 38.57 1.28
86 87 9.788889 AATACCCCCTTCGTAAAGAAATATAAG 57.211 33.333 0.00 0.00 38.57 1.73
87 88 7.441903 ACCCCCTTCGTAAAGAAATATAAGA 57.558 36.000 0.00 0.00 38.57 2.10
88 89 7.506971 ACCCCCTTCGTAAAGAAATATAAGAG 58.493 38.462 0.00 0.00 38.57 2.85
89 90 7.126879 ACCCCCTTCGTAAAGAAATATAAGAGT 59.873 37.037 0.00 0.00 38.57 3.24
90 91 7.441458 CCCCCTTCGTAAAGAAATATAAGAGTG 59.559 40.741 0.00 0.00 38.57 3.51
91 92 7.985752 CCCCTTCGTAAAGAAATATAAGAGTGT 59.014 37.037 0.00 0.00 38.57 3.55
92 93 9.379791 CCCTTCGTAAAGAAATATAAGAGTGTT 57.620 33.333 0.00 0.00 38.57 3.32
108 109 6.727824 AGAGTGTTTAGATCACGATTTTGG 57.272 37.500 0.00 0.00 40.28 3.28
109 110 6.231211 AGAGTGTTTAGATCACGATTTTGGT 58.769 36.000 0.00 0.00 40.28 3.67
110 111 6.147821 AGAGTGTTTAGATCACGATTTTGGTG 59.852 38.462 0.00 0.00 40.28 4.17
111 112 5.763204 AGTGTTTAGATCACGATTTTGGTGT 59.237 36.000 0.00 0.00 40.28 4.16
112 113 6.262273 AGTGTTTAGATCACGATTTTGGTGTT 59.738 34.615 0.00 0.00 40.28 3.32
113 114 6.577427 GTGTTTAGATCACGATTTTGGTGTTC 59.423 38.462 0.00 0.00 36.76 3.18
114 115 6.485313 TGTTTAGATCACGATTTTGGTGTTCT 59.515 34.615 9.60 9.60 43.32 3.01
115 116 6.480524 TTAGATCACGATTTTGGTGTTCTG 57.519 37.500 13.08 0.00 41.83 3.02
116 117 4.641396 AGATCACGATTTTGGTGTTCTGA 58.359 39.130 0.00 0.00 40.86 3.27
117 118 5.063204 AGATCACGATTTTGGTGTTCTGAA 58.937 37.500 0.00 0.00 40.86 3.02
118 119 4.545823 TCACGATTTTGGTGTTCTGAAC 57.454 40.909 13.49 13.49 36.76 3.18
119 120 3.001838 TCACGATTTTGGTGTTCTGAACG 59.998 43.478 15.18 3.29 36.76 3.95
120 121 2.286772 ACGATTTTGGTGTTCTGAACGC 60.287 45.455 22.41 22.41 41.08 4.84
121 122 2.032030 CGATTTTGGTGTTCTGAACGCT 60.032 45.455 27.31 12.11 41.52 5.07
122 123 3.548014 CGATTTTGGTGTTCTGAACGCTT 60.548 43.478 27.31 11.89 41.52 4.68
123 124 3.859411 TTTTGGTGTTCTGAACGCTTT 57.141 38.095 27.31 0.00 41.52 3.51
124 125 4.966965 TTTTGGTGTTCTGAACGCTTTA 57.033 36.364 27.31 14.99 41.52 1.85
125 126 4.966965 TTTGGTGTTCTGAACGCTTTAA 57.033 36.364 27.31 18.78 41.52 1.52
126 127 5.508200 TTTGGTGTTCTGAACGCTTTAAT 57.492 34.783 27.31 0.00 41.52 1.40
127 128 6.621316 TTTGGTGTTCTGAACGCTTTAATA 57.379 33.333 27.31 9.72 41.52 0.98
128 129 6.811253 TTGGTGTTCTGAACGCTTTAATAT 57.189 33.333 27.31 0.00 41.52 1.28
129 130 6.811253 TGGTGTTCTGAACGCTTTAATATT 57.189 33.333 27.31 0.00 41.52 1.28
130 131 7.209471 TGGTGTTCTGAACGCTTTAATATTT 57.791 32.000 27.31 0.00 41.52 1.40
131 132 7.302524 TGGTGTTCTGAACGCTTTAATATTTC 58.697 34.615 27.31 11.68 41.52 2.17
132 133 6.745907 GGTGTTCTGAACGCTTTAATATTTCC 59.254 38.462 27.31 8.03 41.52 3.13
133 134 7.361799 GGTGTTCTGAACGCTTTAATATTTCCT 60.362 37.037 27.31 0.00 41.52 3.36
134 135 8.021396 GTGTTCTGAACGCTTTAATATTTCCTT 58.979 33.333 23.02 0.00 38.81 3.36
135 136 9.221933 TGTTCTGAACGCTTTAATATTTCCTTA 57.778 29.630 15.18 0.00 0.00 2.69
136 137 9.486857 GTTCTGAACGCTTTAATATTTCCTTAC 57.513 33.333 4.57 0.00 0.00 2.34
137 138 8.780846 TCTGAACGCTTTAATATTTCCTTACA 57.219 30.769 0.00 0.00 0.00 2.41
138 139 8.879759 TCTGAACGCTTTAATATTTCCTTACAG 58.120 33.333 0.00 0.00 0.00 2.74
139 140 8.780846 TGAACGCTTTAATATTTCCTTACAGA 57.219 30.769 0.00 0.00 0.00 3.41
140 141 8.879759 TGAACGCTTTAATATTTCCTTACAGAG 58.120 33.333 0.00 0.00 0.00 3.35
142 143 6.766467 ACGCTTTAATATTTCCTTACAGAGGG 59.234 38.462 0.00 0.00 46.31 4.30
143 144 6.990349 CGCTTTAATATTTCCTTACAGAGGGA 59.010 38.462 0.00 0.00 46.31 4.20
144 145 7.171678 CGCTTTAATATTTCCTTACAGAGGGAG 59.828 40.741 0.00 0.00 46.31 4.30
145 146 7.993758 GCTTTAATATTTCCTTACAGAGGGAGT 59.006 37.037 0.00 0.00 46.31 3.85
148 149 9.725206 TTAATATTTCCTTACAGAGGGAGTAGT 57.275 33.333 0.00 0.00 46.31 2.73
149 150 8.625467 AATATTTCCTTACAGAGGGAGTAGTT 57.375 34.615 0.00 0.00 46.31 2.24
150 151 6.954352 ATTTCCTTACAGAGGGAGTAGTTT 57.046 37.500 0.00 0.00 46.31 2.66
151 152 5.997384 TTCCTTACAGAGGGAGTAGTTTC 57.003 43.478 0.00 0.00 46.31 2.78
152 153 4.351127 TCCTTACAGAGGGAGTAGTTTCC 58.649 47.826 0.00 0.00 46.31 3.13
153 154 4.094476 CCTTACAGAGGGAGTAGTTTCCA 58.906 47.826 0.00 0.00 42.26 3.53
154 155 4.530946 CCTTACAGAGGGAGTAGTTTCCAA 59.469 45.833 0.00 0.00 42.26 3.53
155 156 5.479124 TTACAGAGGGAGTAGTTTCCAAC 57.521 43.478 0.00 0.00 39.09 3.77
156 157 3.588569 ACAGAGGGAGTAGTTTCCAACT 58.411 45.455 0.00 0.00 45.40 3.16
157 158 3.325135 ACAGAGGGAGTAGTTTCCAACTG 59.675 47.826 12.61 12.61 42.84 3.16
158 159 3.325135 CAGAGGGAGTAGTTTCCAACTGT 59.675 47.826 0.00 0.00 42.84 3.55
159 160 4.527038 CAGAGGGAGTAGTTTCCAACTGTA 59.473 45.833 0.00 0.00 42.84 2.74
160 161 5.187967 CAGAGGGAGTAGTTTCCAACTGTAT 59.812 44.000 0.00 0.00 42.84 2.29
161 162 6.380274 CAGAGGGAGTAGTTTCCAACTGTATA 59.620 42.308 0.00 0.00 42.84 1.47
162 163 7.070074 CAGAGGGAGTAGTTTCCAACTGTATAT 59.930 40.741 0.00 0.00 42.84 0.86
163 164 7.624077 AGAGGGAGTAGTTTCCAACTGTATATT 59.376 37.037 0.00 0.00 42.84 1.28
164 165 8.159229 AGGGAGTAGTTTCCAACTGTATATTT 57.841 34.615 0.00 0.00 42.84 1.40
165 166 9.275572 AGGGAGTAGTTTCCAACTGTATATTTA 57.724 33.333 0.00 0.00 42.84 1.40
166 167 9.543783 GGGAGTAGTTTCCAACTGTATATTTAG 57.456 37.037 0.00 0.00 42.84 1.85
219 220 8.415950 TTTTAGGGTTAAAAATCTGATGCTCA 57.584 30.769 0.00 0.00 36.18 4.26
220 221 5.904362 AGGGTTAAAAATCTGATGCTCAC 57.096 39.130 0.00 0.00 0.00 3.51
221 222 5.324409 AGGGTTAAAAATCTGATGCTCACA 58.676 37.500 0.00 0.00 0.00 3.58
222 223 5.416952 AGGGTTAAAAATCTGATGCTCACAG 59.583 40.000 0.00 0.00 36.80 3.66
223 224 5.393461 GGGTTAAAAATCTGATGCTCACAGG 60.393 44.000 0.00 0.00 36.22 4.00
224 225 5.183904 GGTTAAAAATCTGATGCTCACAGGT 59.816 40.000 0.00 0.00 36.22 4.00
225 226 6.374333 GGTTAAAAATCTGATGCTCACAGGTA 59.626 38.462 0.00 0.00 36.22 3.08
226 227 5.886960 AAAAATCTGATGCTCACAGGTAC 57.113 39.130 0.00 0.00 36.22 3.34
227 228 4.558226 AAATCTGATGCTCACAGGTACA 57.442 40.909 0.00 0.00 36.22 2.90
228 229 4.767578 AATCTGATGCTCACAGGTACAT 57.232 40.909 0.00 0.00 36.22 2.29
229 230 3.808466 TCTGATGCTCACAGGTACATC 57.192 47.619 0.00 0.00 39.47 3.06
230 231 2.099756 TCTGATGCTCACAGGTACATCG 59.900 50.000 0.00 0.00 41.43 3.84
231 232 1.136891 TGATGCTCACAGGTACATCGG 59.863 52.381 0.00 0.00 41.43 4.18
232 233 1.409064 GATGCTCACAGGTACATCGGA 59.591 52.381 0.00 0.00 30.57 4.55
233 234 1.485124 TGCTCACAGGTACATCGGAT 58.515 50.000 0.00 0.00 0.00 4.18
234 235 1.409064 TGCTCACAGGTACATCGGATC 59.591 52.381 0.00 0.00 0.00 3.36
235 236 1.269831 GCTCACAGGTACATCGGATCC 60.270 57.143 0.00 0.00 0.00 3.36
236 237 1.341531 CTCACAGGTACATCGGATCCC 59.658 57.143 6.06 0.00 0.00 3.85
250 251 2.917933 GGATCCCGATTGAACACATGA 58.082 47.619 0.00 0.00 0.00 3.07
251 252 2.614057 GGATCCCGATTGAACACATGAC 59.386 50.000 0.00 0.00 0.00 3.06
252 253 2.849294 TCCCGATTGAACACATGACA 57.151 45.000 0.00 0.00 0.00 3.58
253 254 3.133141 TCCCGATTGAACACATGACAA 57.867 42.857 0.00 0.85 0.00 3.18
254 255 3.684908 TCCCGATTGAACACATGACAAT 58.315 40.909 0.00 5.86 37.03 2.71
255 256 4.078537 TCCCGATTGAACACATGACAATT 58.921 39.130 0.00 0.00 34.94 2.32
256 257 5.249420 TCCCGATTGAACACATGACAATTA 58.751 37.500 0.00 0.00 34.94 1.40
257 258 5.353956 TCCCGATTGAACACATGACAATTAG 59.646 40.000 0.00 4.94 34.94 1.73
258 259 5.123820 CCCGATTGAACACATGACAATTAGT 59.876 40.000 0.00 0.00 34.94 2.24
259 260 6.315144 CCCGATTGAACACATGACAATTAGTA 59.685 38.462 0.00 0.00 34.94 1.82
260 261 7.180079 CCGATTGAACACATGACAATTAGTAC 58.820 38.462 0.00 0.00 34.94 2.73
261 262 7.180079 CGATTGAACACATGACAATTAGTACC 58.820 38.462 0.00 0.00 34.94 3.34
262 263 7.064609 CGATTGAACACATGACAATTAGTACCT 59.935 37.037 0.00 0.00 34.94 3.08
263 264 7.433708 TTGAACACATGACAATTAGTACCTG 57.566 36.000 0.00 0.00 0.00 4.00
264 265 6.530120 TGAACACATGACAATTAGTACCTGT 58.470 36.000 0.00 0.00 0.00 4.00
265 266 7.672240 TGAACACATGACAATTAGTACCTGTA 58.328 34.615 0.00 0.00 0.00 2.74
266 267 7.817478 TGAACACATGACAATTAGTACCTGTAG 59.183 37.037 0.00 0.00 0.00 2.74
267 268 6.106673 ACACATGACAATTAGTACCTGTAGC 58.893 40.000 0.00 0.00 0.00 3.58
268 269 6.106003 CACATGACAATTAGTACCTGTAGCA 58.894 40.000 0.00 0.00 0.00 3.49
269 270 6.763135 CACATGACAATTAGTACCTGTAGCAT 59.237 38.462 0.00 0.00 0.00 3.79
270 271 6.763135 ACATGACAATTAGTACCTGTAGCATG 59.237 38.462 0.00 0.00 34.18 4.06
271 272 5.670485 TGACAATTAGTACCTGTAGCATGG 58.330 41.667 0.00 0.00 0.00 3.66
272 273 4.451900 ACAATTAGTACCTGTAGCATGGC 58.548 43.478 0.00 0.00 0.00 4.40
273 274 4.080582 ACAATTAGTACCTGTAGCATGGCA 60.081 41.667 0.00 0.00 0.00 4.92
274 275 4.771114 ATTAGTACCTGTAGCATGGCAA 57.229 40.909 0.00 0.00 0.00 4.52
275 276 4.771114 TTAGTACCTGTAGCATGGCAAT 57.229 40.909 0.00 0.00 0.00 3.56
276 277 3.652057 AGTACCTGTAGCATGGCAATT 57.348 42.857 0.00 0.00 0.00 2.32
277 278 3.968265 AGTACCTGTAGCATGGCAATTT 58.032 40.909 0.00 0.00 0.00 1.82
278 279 4.344104 AGTACCTGTAGCATGGCAATTTT 58.656 39.130 0.00 0.00 0.00 1.82
279 280 4.772100 AGTACCTGTAGCATGGCAATTTTT 59.228 37.500 0.00 0.00 0.00 1.94
280 281 4.192429 ACCTGTAGCATGGCAATTTTTC 57.808 40.909 0.00 0.00 0.00 2.29
281 282 3.834231 ACCTGTAGCATGGCAATTTTTCT 59.166 39.130 0.00 0.00 0.00 2.52
282 283 4.178540 CCTGTAGCATGGCAATTTTTCTG 58.821 43.478 0.00 0.00 0.00 3.02
283 284 4.082081 CCTGTAGCATGGCAATTTTTCTGA 60.082 41.667 0.00 0.00 0.00 3.27
284 285 4.808558 TGTAGCATGGCAATTTTTCTGAC 58.191 39.130 0.00 0.00 0.00 3.51
285 286 4.280425 TGTAGCATGGCAATTTTTCTGACA 59.720 37.500 0.00 0.00 35.91 3.58
286 287 4.339872 AGCATGGCAATTTTTCTGACAA 57.660 36.364 0.00 0.00 34.85 3.18
287 288 4.901868 AGCATGGCAATTTTTCTGACAAT 58.098 34.783 0.00 0.00 34.85 2.71
288 289 5.310451 AGCATGGCAATTTTTCTGACAATT 58.690 33.333 0.00 0.00 34.85 2.32
289 290 6.465948 AGCATGGCAATTTTTCTGACAATTA 58.534 32.000 0.00 0.00 34.85 1.40
290 291 7.107542 AGCATGGCAATTTTTCTGACAATTAT 58.892 30.769 0.00 0.00 34.85 1.28
291 292 7.608761 AGCATGGCAATTTTTCTGACAATTATT 59.391 29.630 0.00 0.00 34.85 1.40
292 293 8.881743 GCATGGCAATTTTTCTGACAATTATTA 58.118 29.630 0.00 0.00 34.85 0.98
323 324 9.598517 ACATGGCAATTTTTACTTATAACATGG 57.401 29.630 0.00 0.00 36.18 3.66
324 325 8.550376 CATGGCAATTTTTACTTATAACATGGC 58.450 33.333 0.00 0.00 0.00 4.40
325 326 7.615403 TGGCAATTTTTACTTATAACATGGCA 58.385 30.769 0.00 0.00 0.00 4.92
326 327 8.097038 TGGCAATTTTTACTTATAACATGGCAA 58.903 29.630 0.00 0.00 0.00 4.52
327 328 8.940952 GGCAATTTTTACTTATAACATGGCAAA 58.059 29.630 0.00 0.00 0.00 3.68
336 337 8.588290 ACTTATAACATGGCAAATCCTTTACA 57.412 30.769 0.00 0.00 35.26 2.41
337 338 9.200817 ACTTATAACATGGCAAATCCTTTACAT 57.799 29.630 0.00 0.00 35.26 2.29
338 339 9.467258 CTTATAACATGGCAAATCCTTTACATG 57.533 33.333 0.00 0.00 40.28 3.21
339 340 5.999205 AACATGGCAAATCCTTTACATGA 57.001 34.783 16.63 0.00 38.45 3.07
340 341 5.587388 ACATGGCAAATCCTTTACATGAG 57.413 39.130 16.63 0.00 38.45 2.90
341 342 4.142093 ACATGGCAAATCCTTTACATGAGC 60.142 41.667 16.63 0.00 38.45 4.26
342 343 3.429492 TGGCAAATCCTTTACATGAGCA 58.571 40.909 0.00 0.00 35.26 4.26
343 344 4.025360 TGGCAAATCCTTTACATGAGCAT 58.975 39.130 0.00 0.00 35.26 3.79
344 345 4.142116 TGGCAAATCCTTTACATGAGCATG 60.142 41.667 8.82 8.82 39.11 4.06
345 346 4.365723 GCAAATCCTTTACATGAGCATGG 58.634 43.478 14.35 0.00 42.91 3.66
346 347 4.365723 CAAATCCTTTACATGAGCATGGC 58.634 43.478 14.35 0.00 42.91 4.40
347 348 2.804986 TCCTTTACATGAGCATGGCA 57.195 45.000 14.35 0.00 42.91 4.92
348 349 3.084536 TCCTTTACATGAGCATGGCAA 57.915 42.857 14.35 5.73 42.91 4.52
349 350 3.429492 TCCTTTACATGAGCATGGCAAA 58.571 40.909 14.35 11.95 42.91 3.68
350 351 4.025360 TCCTTTACATGAGCATGGCAAAT 58.975 39.130 14.35 0.00 42.91 2.32
351 352 4.467082 TCCTTTACATGAGCATGGCAAATT 59.533 37.500 14.35 0.00 42.91 1.82
352 353 5.655974 TCCTTTACATGAGCATGGCAAATTA 59.344 36.000 14.35 3.89 42.91 1.40
353 354 6.154192 TCCTTTACATGAGCATGGCAAATTAA 59.846 34.615 14.35 1.22 42.91 1.40
354 355 6.987992 CCTTTACATGAGCATGGCAAATTAAT 59.012 34.615 14.35 0.00 42.91 1.40
355 356 7.170320 CCTTTACATGAGCATGGCAAATTAATC 59.830 37.037 14.35 0.00 42.91 1.75
356 357 5.864418 ACATGAGCATGGCAAATTAATCT 57.136 34.783 14.35 0.00 42.91 2.40
357 358 5.597806 ACATGAGCATGGCAAATTAATCTG 58.402 37.500 14.35 0.00 42.91 2.90
358 359 5.128171 ACATGAGCATGGCAAATTAATCTGT 59.872 36.000 14.35 0.00 42.91 3.41
359 360 5.664294 TGAGCATGGCAAATTAATCTGTT 57.336 34.783 0.00 0.00 0.00 3.16
360 361 6.040209 TGAGCATGGCAAATTAATCTGTTT 57.960 33.333 0.00 0.00 0.00 2.83
361 362 6.465948 TGAGCATGGCAAATTAATCTGTTTT 58.534 32.000 0.00 0.00 0.00 2.43
362 363 6.935771 TGAGCATGGCAAATTAATCTGTTTTT 59.064 30.769 0.00 0.00 0.00 1.94
363 364 7.095144 TGAGCATGGCAAATTAATCTGTTTTTG 60.095 33.333 0.00 0.00 33.32 2.44
377 378 6.847956 TCTGTTTTTGCATGAAAAATCTGG 57.152 33.333 12.46 9.01 43.71 3.86
378 379 5.759273 TCTGTTTTTGCATGAAAAATCTGGG 59.241 36.000 12.46 7.00 43.71 4.45
379 380 4.275443 TGTTTTTGCATGAAAAATCTGGGC 59.725 37.500 12.46 1.09 43.71 5.36
380 381 2.367030 TTGCATGAAAAATCTGGGCG 57.633 45.000 0.00 0.00 0.00 6.13
381 382 0.108709 TGCATGAAAAATCTGGGCGC 60.109 50.000 0.00 0.00 0.00 6.53
382 383 0.807275 GCATGAAAAATCTGGGCGCC 60.807 55.000 21.18 21.18 0.00 6.53
383 384 0.179103 CATGAAAAATCTGGGCGCCC 60.179 55.000 39.40 39.40 0.00 6.13
384 385 1.666209 ATGAAAAATCTGGGCGCCCG 61.666 55.000 39.00 31.55 39.42 6.13
385 386 3.699955 GAAAAATCTGGGCGCCCGC 62.700 63.158 39.00 18.70 39.42 6.13
386 387 4.740822 AAAATCTGGGCGCCCGCT 62.741 61.111 39.00 23.75 41.60 5.52
394 395 3.804193 GGCGCCCGCTGAGAAAAG 61.804 66.667 18.11 0.00 41.60 2.27
395 396 4.467062 GCGCCCGCTGAGAAAAGC 62.467 66.667 5.27 0.00 39.94 3.51
396 397 2.743928 CGCCCGCTGAGAAAAGCT 60.744 61.111 0.00 0.00 41.24 3.74
397 398 1.447838 CGCCCGCTGAGAAAAGCTA 60.448 57.895 0.00 0.00 41.24 3.32
398 399 1.019278 CGCCCGCTGAGAAAAGCTAA 61.019 55.000 0.00 0.00 41.24 3.09
399 400 1.165270 GCCCGCTGAGAAAAGCTAAA 58.835 50.000 0.00 0.00 41.24 1.85
400 401 1.539827 GCCCGCTGAGAAAAGCTAAAA 59.460 47.619 0.00 0.00 41.24 1.52
401 402 2.030274 GCCCGCTGAGAAAAGCTAAAAA 60.030 45.455 0.00 0.00 41.24 1.94
402 403 3.367395 GCCCGCTGAGAAAAGCTAAAAAT 60.367 43.478 0.00 0.00 41.24 1.82
403 404 4.168760 CCCGCTGAGAAAAGCTAAAAATG 58.831 43.478 0.00 0.00 41.24 2.32
404 405 4.168760 CCGCTGAGAAAAGCTAAAAATGG 58.831 43.478 0.00 0.00 41.24 3.16
405 406 4.082787 CCGCTGAGAAAAGCTAAAAATGGA 60.083 41.667 0.00 0.00 41.24 3.41
406 407 5.460646 CGCTGAGAAAAGCTAAAAATGGAA 58.539 37.500 0.00 0.00 41.24 3.53
407 408 5.920273 CGCTGAGAAAAGCTAAAAATGGAAA 59.080 36.000 0.00 0.00 41.24 3.13
408 409 6.129088 CGCTGAGAAAAGCTAAAAATGGAAAC 60.129 38.462 0.00 0.00 41.24 2.78
409 410 6.129088 GCTGAGAAAAGCTAAAAATGGAAACG 60.129 38.462 0.00 0.00 40.20 3.60
410 411 7.033530 TGAGAAAAGCTAAAAATGGAAACGA 57.966 32.000 0.00 0.00 0.00 3.85
411 412 7.657336 TGAGAAAAGCTAAAAATGGAAACGAT 58.343 30.769 0.00 0.00 0.00 3.73
412 413 8.788806 TGAGAAAAGCTAAAAATGGAAACGATA 58.211 29.630 0.00 0.00 0.00 2.92
413 414 8.965986 AGAAAAGCTAAAAATGGAAACGATAC 57.034 30.769 0.00 0.00 0.00 2.24
414 415 8.573035 AGAAAAGCTAAAAATGGAAACGATACA 58.427 29.630 0.00 0.00 0.00 2.29
415 416 9.353999 GAAAAGCTAAAAATGGAAACGATACAT 57.646 29.630 0.00 0.00 0.00 2.29
423 424 9.897744 AAAAATGGAAACGATACATATATGCTG 57.102 29.630 12.79 3.00 0.00 4.41
424 425 8.846943 AAATGGAAACGATACATATATGCTGA 57.153 30.769 12.79 0.00 0.00 4.26
425 426 8.484641 AATGGAAACGATACATATATGCTGAG 57.515 34.615 12.79 5.17 0.00 3.35
426 427 7.227049 TGGAAACGATACATATATGCTGAGA 57.773 36.000 12.79 0.00 0.00 3.27
427 428 7.666623 TGGAAACGATACATATATGCTGAGAA 58.333 34.615 12.79 0.00 0.00 2.87
428 429 8.147704 TGGAAACGATACATATATGCTGAGAAA 58.852 33.333 12.79 0.00 0.00 2.52
429 430 8.988934 GGAAACGATACATATATGCTGAGAAAA 58.011 33.333 12.79 0.00 0.00 2.29
431 432 7.588143 ACGATACATATATGCTGAGAAAAGC 57.412 36.000 12.79 0.00 43.82 3.51
432 433 7.382110 ACGATACATATATGCTGAGAAAAGCT 58.618 34.615 12.79 0.00 43.90 3.74
433 434 8.523658 ACGATACATATATGCTGAGAAAAGCTA 58.476 33.333 12.79 0.00 43.90 3.32
434 435 9.358872 CGATACATATATGCTGAGAAAAGCTAA 57.641 33.333 12.79 0.00 43.90 3.09
438 439 9.790344 ACATATATGCTGAGAAAAGCTAAATCT 57.210 29.630 12.79 0.00 43.90 2.40
440 441 5.831702 ATGCTGAGAAAAGCTAAATCTGG 57.168 39.130 0.98 0.00 43.90 3.86
441 442 4.910195 TGCTGAGAAAAGCTAAATCTGGA 58.090 39.130 0.98 0.00 43.90 3.86
442 443 5.503927 TGCTGAGAAAAGCTAAATCTGGAT 58.496 37.500 0.98 0.00 43.90 3.41
443 444 6.653020 TGCTGAGAAAAGCTAAATCTGGATA 58.347 36.000 0.98 0.00 43.90 2.59
444 445 7.112122 TGCTGAGAAAAGCTAAATCTGGATAA 58.888 34.615 0.98 0.00 43.90 1.75
445 446 7.776969 TGCTGAGAAAAGCTAAATCTGGATAAT 59.223 33.333 0.98 0.00 43.90 1.28
446 447 8.628280 GCTGAGAAAAGCTAAATCTGGATAATT 58.372 33.333 0.98 0.00 40.20 1.40
530 535 3.709653 ACTTCTCTTGGTGTTGGTGACTA 59.290 43.478 0.00 0.00 0.00 2.59
545 550 5.359756 TGGTGACTATCAGTGCACATTATC 58.640 41.667 21.04 9.05 32.03 1.75
688 696 1.067354 CACTTCTGCAATTGGGAAGGC 60.067 52.381 14.87 0.00 40.25 4.35
691 699 0.326595 TCTGCAATTGGGAAGGCGTA 59.673 50.000 7.72 0.00 0.00 4.42
701 709 1.004918 GAAGGCGTACTGTGCAGGT 60.005 57.895 4.11 0.00 0.00 4.00
710 718 0.764890 ACTGTGCAGGTTGAAGGCTA 59.235 50.000 4.11 0.00 0.00 3.93
812 824 6.569127 TCTAGATTCTCTAGTCCTGACAGT 57.431 41.667 10.20 0.00 45.11 3.55
876 892 1.553248 CATCACCTCCAAACCCTACGA 59.447 52.381 0.00 0.00 0.00 3.43
916 933 3.618997 GCAAGGAAGGATACCGAGTTTCA 60.619 47.826 0.00 0.00 37.17 2.69
931 948 3.764885 GTTTCACAAACTGCACAGAGT 57.235 42.857 4.31 0.00 38.35 3.24
936 953 5.888691 TCACAAACTGCACAGAGTTAAAA 57.111 34.783 4.31 0.00 35.01 1.52
977 994 7.775053 TTAACAATCTAGTTGGCCAATTTCT 57.225 32.000 23.66 16.65 42.28 2.52
992 1009 5.289434 GCCAATTTCTTGCTAATTTTCCTCG 59.711 40.000 0.00 0.00 0.00 4.63
1147 1167 5.065731 GCAGATTTGTCTAGCTTGCAATACT 59.934 40.000 0.00 3.23 0.00 2.12
1249 1269 2.355818 GGTCCCAATGGTCTAAGTGGAC 60.356 54.545 0.00 0.00 39.99 4.02
1332 1355 6.943146 AGAACTTCTTTCTAGGAAACATTCCC 59.057 38.462 5.53 0.00 43.27 3.97
1347 1370 6.575162 AACATTCCCAGTTCATTCACTAAC 57.425 37.500 0.00 0.00 0.00 2.34
1425 1448 2.093306 CCACGATTGGCAGACTTACA 57.907 50.000 0.00 0.00 35.56 2.41
1492 1515 3.766545 AGCAAGCAAGATTGGGAGTTTA 58.233 40.909 0.00 0.00 0.00 2.01
1545 1568 2.930826 TGTTCTCCCTGAGTTGGAAC 57.069 50.000 0.00 0.00 37.41 3.62
1651 1677 2.879026 GGAGATTTTCCTTCGGGCATAC 59.121 50.000 0.00 0.00 43.16 2.39
1652 1678 3.541632 GAGATTTTCCTTCGGGCATACA 58.458 45.455 0.00 0.00 34.44 2.29
1729 1755 2.940514 TCCAGAGTGGATTGGGACTA 57.059 50.000 0.00 0.00 42.67 2.59
2204 2232 9.823647 TTTGAATTTGTCTGCCAATAACTTAAA 57.176 25.926 0.00 0.00 31.81 1.52
2235 2263 3.480470 ACCAACATCTCTTGTCAACCTG 58.520 45.455 0.00 0.00 37.68 4.00
2238 2266 3.430042 ACATCTCTTGTCAACCTGCAT 57.570 42.857 0.00 0.00 30.89 3.96
2277 2305 9.994432 CTAGATTTGTCATTCAACCATCTAAAC 57.006 33.333 0.00 0.00 36.38 2.01
2355 2385 1.434513 ATCAGGGGCTTTGTGGTGGA 61.435 55.000 0.00 0.00 0.00 4.02
2359 2389 0.111639 GGGGCTTTGTGGTGGAGTAA 59.888 55.000 0.00 0.00 0.00 2.24
2452 2482 7.779798 TGCTCAAAATAATTACTCCAATAGCCT 59.220 33.333 0.00 0.00 0.00 4.58
2454 2484 9.342308 CTCAAAATAATTACTCCAATAGCCTGA 57.658 33.333 0.00 0.00 0.00 3.86
2519 2549 4.734266 AGAGGAAAGCACAAGAGGAATTT 58.266 39.130 0.00 0.00 0.00 1.82
2784 2814 4.623932 TCTGGTCCATATCATAACTGCC 57.376 45.455 0.00 0.00 0.00 4.85
2791 2821 4.001652 CCATATCATAACTGCCTGCTCAG 58.998 47.826 0.00 0.00 39.86 3.35
2897 2927 0.035458 CAGGACCGTGAAGGCTCTTT 59.965 55.000 0.00 0.00 46.52 2.52
2909 2939 6.145535 GTGAAGGCTCTTTTGATTTGTACTG 58.854 40.000 0.00 0.00 0.00 2.74
2998 3028 1.754226 ACAACGAAGGCACAATGGTTT 59.246 42.857 0.00 0.00 0.00 3.27
3177 3216 6.115446 CACTGCTCCAGGTAATTGAATCTTA 58.885 40.000 0.00 0.00 35.51 2.10
3207 3260 7.636259 AATCATGTCACCACGTTTTATTTTG 57.364 32.000 0.00 0.00 0.00 2.44
3262 3326 9.807649 ATTAACTCCTTTTGTATTCATTGATGC 57.192 29.630 0.00 0.00 0.00 3.91
3337 3401 2.231478 TGGTGTCGTTCTCCTCAAGATC 59.769 50.000 0.00 0.00 32.82 2.75
3405 3469 7.552687 ACTGAACATTGTGAAGTTTACAGAGAA 59.447 33.333 0.39 0.00 0.00 2.87
3437 3501 4.507335 CCTGATAGGGTATTGGGGATTGTG 60.507 50.000 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.474920 CCACTTTTATGACACATAAACATGTTT 57.525 29.630 25.99 25.99 36.63 2.83
12 13 8.637986 ACCACTTTTATGACACATAAACATGTT 58.362 29.630 4.92 4.92 31.37 2.71
13 14 8.177119 ACCACTTTTATGACACATAAACATGT 57.823 30.769 13.95 0.00 34.64 3.21
14 15 9.773328 CTACCACTTTTATGACACATAAACATG 57.227 33.333 13.95 13.90 0.00 3.21
15 16 9.515226 ACTACCACTTTTATGACACATAAACAT 57.485 29.630 13.95 5.47 0.00 2.71
16 17 8.911918 ACTACCACTTTTATGACACATAAACA 57.088 30.769 13.95 7.31 0.00 2.83
21 22 9.733556 TTGATTACTACCACTTTTATGACACAT 57.266 29.630 0.00 0.00 0.00 3.21
22 23 9.733556 ATTGATTACTACCACTTTTATGACACA 57.266 29.630 0.00 0.00 0.00 3.72
25 26 9.916397 CGAATTGATTACTACCACTTTTATGAC 57.084 33.333 0.00 0.00 0.00 3.06
26 27 9.661563 ACGAATTGATTACTACCACTTTTATGA 57.338 29.630 0.00 0.00 0.00 2.15
52 53 9.972106 TCTTTACGAAGGGGGTATTTTTAAATA 57.028 29.630 0.00 0.00 33.56 1.40
53 54 8.882557 TCTTTACGAAGGGGGTATTTTTAAAT 57.117 30.769 0.00 0.00 33.56 1.40
54 55 8.703378 TTCTTTACGAAGGGGGTATTTTTAAA 57.297 30.769 0.00 0.00 33.56 1.52
55 56 8.703378 TTTCTTTACGAAGGGGGTATTTTTAA 57.297 30.769 0.00 0.00 33.56 1.52
56 57 8.882557 ATTTCTTTACGAAGGGGGTATTTTTA 57.117 30.769 0.00 0.00 33.56 1.52
57 58 7.786046 ATTTCTTTACGAAGGGGGTATTTTT 57.214 32.000 0.00 0.00 33.56 1.94
60 61 9.788889 CTTATATTTCTTTACGAAGGGGGTATT 57.211 33.333 0.00 0.00 33.56 1.89
61 62 9.162733 TCTTATATTTCTTTACGAAGGGGGTAT 57.837 33.333 0.00 0.00 33.56 2.73
62 63 8.551682 TCTTATATTTCTTTACGAAGGGGGTA 57.448 34.615 0.00 0.00 33.56 3.69
63 64 7.126879 ACTCTTATATTTCTTTACGAAGGGGGT 59.873 37.037 0.00 0.00 33.56 4.95
64 65 7.441458 CACTCTTATATTTCTTTACGAAGGGGG 59.559 40.741 0.00 0.00 33.56 5.40
65 66 7.985752 ACACTCTTATATTTCTTTACGAAGGGG 59.014 37.037 0.00 0.00 33.56 4.79
66 67 8.943909 ACACTCTTATATTTCTTTACGAAGGG 57.056 34.615 0.00 0.00 33.56 3.95
82 83 8.883731 CCAAAATCGTGATCTAAACACTCTTAT 58.116 33.333 0.00 0.00 36.29 1.73
83 84 7.876068 ACCAAAATCGTGATCTAAACACTCTTA 59.124 33.333 0.00 0.00 36.29 2.10
84 85 6.710744 ACCAAAATCGTGATCTAAACACTCTT 59.289 34.615 0.00 0.00 36.29 2.85
85 86 6.147821 CACCAAAATCGTGATCTAAACACTCT 59.852 38.462 0.00 0.00 36.29 3.24
86 87 6.073222 ACACCAAAATCGTGATCTAAACACTC 60.073 38.462 0.00 0.00 36.29 3.51
87 88 5.763204 ACACCAAAATCGTGATCTAAACACT 59.237 36.000 0.00 0.00 36.29 3.55
88 89 5.997385 ACACCAAAATCGTGATCTAAACAC 58.003 37.500 0.00 0.00 35.17 3.32
89 90 6.485313 AGAACACCAAAATCGTGATCTAAACA 59.515 34.615 0.00 0.00 40.38 2.83
90 91 6.797033 CAGAACACCAAAATCGTGATCTAAAC 59.203 38.462 1.15 0.00 40.25 2.01
91 92 6.708502 TCAGAACACCAAAATCGTGATCTAAA 59.291 34.615 1.15 0.00 40.25 1.85
92 93 6.227522 TCAGAACACCAAAATCGTGATCTAA 58.772 36.000 1.15 0.00 40.25 2.10
93 94 5.789521 TCAGAACACCAAAATCGTGATCTA 58.210 37.500 1.15 0.00 40.25 1.98
94 95 4.641396 TCAGAACACCAAAATCGTGATCT 58.359 39.130 0.00 0.00 42.19 2.75
95 96 5.147162 GTTCAGAACACCAAAATCGTGATC 58.853 41.667 8.54 0.00 34.29 2.92
96 97 4.319477 CGTTCAGAACACCAAAATCGTGAT 60.319 41.667 13.82 0.00 35.17 3.06
97 98 3.001838 CGTTCAGAACACCAAAATCGTGA 59.998 43.478 13.82 0.00 35.17 4.35
98 99 3.288242 CGTTCAGAACACCAAAATCGTG 58.712 45.455 13.82 0.00 37.26 4.35
99 100 2.286772 GCGTTCAGAACACCAAAATCGT 60.287 45.455 13.82 0.00 0.00 3.73
100 101 2.032030 AGCGTTCAGAACACCAAAATCG 60.032 45.455 13.82 0.00 0.00 3.34
101 102 3.626028 AGCGTTCAGAACACCAAAATC 57.374 42.857 13.82 0.00 0.00 2.17
102 103 4.385358 AAAGCGTTCAGAACACCAAAAT 57.615 36.364 13.82 0.00 0.00 1.82
103 104 3.859411 AAAGCGTTCAGAACACCAAAA 57.141 38.095 13.82 0.00 0.00 2.44
104 105 4.966965 TTAAAGCGTTCAGAACACCAAA 57.033 36.364 13.82 0.00 0.00 3.28
105 106 6.811253 ATATTAAAGCGTTCAGAACACCAA 57.189 33.333 13.82 0.00 0.00 3.67
106 107 6.811253 AATATTAAAGCGTTCAGAACACCA 57.189 33.333 13.82 0.00 0.00 4.17
107 108 6.745907 GGAAATATTAAAGCGTTCAGAACACC 59.254 38.462 13.82 3.71 0.00 4.16
108 109 7.527457 AGGAAATATTAAAGCGTTCAGAACAC 58.473 34.615 13.82 3.55 0.00 3.32
109 110 7.681939 AGGAAATATTAAAGCGTTCAGAACA 57.318 32.000 13.82 0.00 0.00 3.18
110 111 9.486857 GTAAGGAAATATTAAAGCGTTCAGAAC 57.513 33.333 2.85 2.85 0.00 3.01
111 112 9.221933 TGTAAGGAAATATTAAAGCGTTCAGAA 57.778 29.630 0.00 0.00 0.00 3.02
112 113 8.780846 TGTAAGGAAATATTAAAGCGTTCAGA 57.219 30.769 0.00 0.00 0.00 3.27
113 114 8.879759 TCTGTAAGGAAATATTAAAGCGTTCAG 58.120 33.333 0.00 0.00 0.00 3.02
114 115 8.780846 TCTGTAAGGAAATATTAAAGCGTTCA 57.219 30.769 0.00 0.00 0.00 3.18
129 130 9.101595 GTTGGAAACTACTCCCTCTGTAAGGAA 62.102 44.444 0.00 0.00 45.93 3.36
130 131 7.705431 GTTGGAAACTACTCCCTCTGTAAGGA 61.705 46.154 0.00 0.00 45.93 3.36
131 132 4.094476 TGGAAACTACTCCCTCTGTAAGG 58.906 47.826 0.00 0.00 45.77 2.69
132 133 5.480205 GTTGGAAACTACTCCCTCTGTAAG 58.520 45.833 0.00 0.00 45.32 2.34
133 134 5.479124 GTTGGAAACTACTCCCTCTGTAA 57.521 43.478 0.00 0.00 45.32 2.41
193 194 8.865090 TGAGCATCAGATTTTTAACCCTAAAAA 58.135 29.630 5.52 5.52 43.97 1.94
194 195 8.415950 TGAGCATCAGATTTTTAACCCTAAAA 57.584 30.769 0.00 0.00 42.56 1.52
212 213 1.409064 TCCGATGTACCTGTGAGCATC 59.591 52.381 0.00 0.00 35.63 3.91
213 214 1.485124 TCCGATGTACCTGTGAGCAT 58.515 50.000 0.00 0.00 0.00 3.79
214 215 1.409064 GATCCGATGTACCTGTGAGCA 59.591 52.381 0.00 0.00 0.00 4.26
215 216 1.269831 GGATCCGATGTACCTGTGAGC 60.270 57.143 0.00 0.00 0.00 4.26
216 217 1.341531 GGGATCCGATGTACCTGTGAG 59.658 57.143 5.45 0.00 0.00 3.51
217 218 1.410004 GGGATCCGATGTACCTGTGA 58.590 55.000 5.45 0.00 0.00 3.58
218 219 3.989104 GGGATCCGATGTACCTGTG 57.011 57.895 5.45 0.00 0.00 3.66
230 231 2.614057 GTCATGTGTTCAATCGGGATCC 59.386 50.000 1.92 1.92 0.00 3.36
231 232 3.270027 TGTCATGTGTTCAATCGGGATC 58.730 45.455 0.00 0.00 0.00 3.36
232 233 3.348647 TGTCATGTGTTCAATCGGGAT 57.651 42.857 0.00 0.00 0.00 3.85
233 234 2.849294 TGTCATGTGTTCAATCGGGA 57.151 45.000 0.00 0.00 0.00 5.14
234 235 4.439305 AATTGTCATGTGTTCAATCGGG 57.561 40.909 0.00 0.00 32.39 5.14
235 236 6.182039 ACTAATTGTCATGTGTTCAATCGG 57.818 37.500 0.00 1.24 32.39 4.18
236 237 7.064609 AGGTACTAATTGTCATGTGTTCAATCG 59.935 37.037 0.00 0.00 36.02 3.34
237 238 8.177663 CAGGTACTAATTGTCATGTGTTCAATC 58.822 37.037 0.00 0.00 36.02 2.67
238 239 7.665559 ACAGGTACTAATTGTCATGTGTTCAAT 59.334 33.333 0.00 0.00 36.02 2.57
239 240 6.995686 ACAGGTACTAATTGTCATGTGTTCAA 59.004 34.615 0.00 0.00 36.02 2.69
240 241 6.530120 ACAGGTACTAATTGTCATGTGTTCA 58.470 36.000 0.00 0.00 36.02 3.18
241 242 7.201530 GCTACAGGTACTAATTGTCATGTGTTC 60.202 40.741 0.00 0.00 36.02 3.18
242 243 6.594159 GCTACAGGTACTAATTGTCATGTGTT 59.406 38.462 0.00 0.00 36.02 3.32
243 244 6.106673 GCTACAGGTACTAATTGTCATGTGT 58.893 40.000 0.00 0.00 36.02 3.72
244 245 6.106003 TGCTACAGGTACTAATTGTCATGTG 58.894 40.000 0.00 0.00 36.02 3.21
245 246 6.294361 TGCTACAGGTACTAATTGTCATGT 57.706 37.500 0.00 0.00 36.02 3.21
246 247 6.203530 CCATGCTACAGGTACTAATTGTCATG 59.796 42.308 0.00 4.57 36.02 3.07
247 248 6.291377 CCATGCTACAGGTACTAATTGTCAT 58.709 40.000 0.00 0.00 36.02 3.06
248 249 5.670485 CCATGCTACAGGTACTAATTGTCA 58.330 41.667 0.00 0.00 36.02 3.58
249 250 4.511826 GCCATGCTACAGGTACTAATTGTC 59.488 45.833 0.00 0.00 36.02 3.18
250 251 4.080582 TGCCATGCTACAGGTACTAATTGT 60.081 41.667 0.00 0.00 36.02 2.71
251 252 4.450976 TGCCATGCTACAGGTACTAATTG 58.549 43.478 0.00 0.00 36.02 2.32
252 253 4.771114 TGCCATGCTACAGGTACTAATT 57.229 40.909 0.00 0.00 36.02 1.40
253 254 4.771114 TTGCCATGCTACAGGTACTAAT 57.229 40.909 0.00 0.00 36.02 1.73
254 255 4.771114 ATTGCCATGCTACAGGTACTAA 57.229 40.909 0.00 0.00 36.02 2.24
255 256 4.771114 AATTGCCATGCTACAGGTACTA 57.229 40.909 0.00 0.00 36.02 1.82
256 257 3.652057 AATTGCCATGCTACAGGTACT 57.348 42.857 0.00 0.00 43.88 2.73
257 258 4.718940 AAAATTGCCATGCTACAGGTAC 57.281 40.909 0.00 0.00 0.00 3.34
258 259 5.016173 AGAAAAATTGCCATGCTACAGGTA 58.984 37.500 0.00 0.00 0.00 3.08
259 260 3.834231 AGAAAAATTGCCATGCTACAGGT 59.166 39.130 0.00 0.00 0.00 4.00
260 261 4.082081 TCAGAAAAATTGCCATGCTACAGG 60.082 41.667 0.00 0.00 0.00 4.00
261 262 4.860907 GTCAGAAAAATTGCCATGCTACAG 59.139 41.667 0.00 0.00 0.00 2.74
262 263 4.280425 TGTCAGAAAAATTGCCATGCTACA 59.720 37.500 0.00 0.00 0.00 2.74
263 264 4.808558 TGTCAGAAAAATTGCCATGCTAC 58.191 39.130 0.00 0.00 0.00 3.58
264 265 5.465532 TTGTCAGAAAAATTGCCATGCTA 57.534 34.783 0.00 0.00 0.00 3.49
265 266 4.339872 TTGTCAGAAAAATTGCCATGCT 57.660 36.364 0.00 0.00 0.00 3.79
266 267 5.616488 AATTGTCAGAAAAATTGCCATGC 57.384 34.783 0.00 0.00 0.00 4.06
297 298 9.598517 CCATGTTATAAGTAAAAATTGCCATGT 57.401 29.630 0.00 0.00 0.00 3.21
298 299 8.550376 GCCATGTTATAAGTAAAAATTGCCATG 58.450 33.333 0.00 0.00 0.00 3.66
299 300 8.263640 TGCCATGTTATAAGTAAAAATTGCCAT 58.736 29.630 0.00 0.00 0.00 4.40
300 301 7.615403 TGCCATGTTATAAGTAAAAATTGCCA 58.385 30.769 0.00 0.00 0.00 4.92
301 302 8.485976 TTGCCATGTTATAAGTAAAAATTGCC 57.514 30.769 0.00 0.00 0.00 4.52
310 311 9.688091 TGTAAAGGATTTGCCATGTTATAAGTA 57.312 29.630 0.00 0.00 40.14 2.24
311 312 8.588290 TGTAAAGGATTTGCCATGTTATAAGT 57.412 30.769 0.00 0.00 40.14 2.24
312 313 9.467258 CATGTAAAGGATTTGCCATGTTATAAG 57.533 33.333 0.00 0.00 40.14 1.73
313 314 9.194972 TCATGTAAAGGATTTGCCATGTTATAA 57.805 29.630 12.46 0.00 43.35 0.98
314 315 8.759481 TCATGTAAAGGATTTGCCATGTTATA 57.241 30.769 12.46 0.00 43.35 0.98
315 316 7.658525 TCATGTAAAGGATTTGCCATGTTAT 57.341 32.000 12.46 0.00 43.35 1.89
316 317 6.405731 GCTCATGTAAAGGATTTGCCATGTTA 60.406 38.462 12.46 0.00 43.35 2.41
317 318 5.625197 GCTCATGTAAAGGATTTGCCATGTT 60.625 40.000 12.46 0.00 43.35 2.71
318 319 4.142093 GCTCATGTAAAGGATTTGCCATGT 60.142 41.667 12.46 0.00 43.35 3.21
319 320 4.142116 TGCTCATGTAAAGGATTTGCCATG 60.142 41.667 0.00 8.97 43.80 3.66
320 321 4.025360 TGCTCATGTAAAGGATTTGCCAT 58.975 39.130 0.00 0.00 40.14 4.40
321 322 3.429492 TGCTCATGTAAAGGATTTGCCA 58.571 40.909 0.00 0.00 40.14 4.92
322 323 4.365723 CATGCTCATGTAAAGGATTTGCC 58.634 43.478 1.84 0.00 40.14 4.52
323 324 4.365723 CCATGCTCATGTAAAGGATTTGC 58.634 43.478 8.81 0.00 41.31 3.68
324 325 4.142116 TGCCATGCTCATGTAAAGGATTTG 60.142 41.667 8.81 0.00 35.30 2.32
325 326 4.025360 TGCCATGCTCATGTAAAGGATTT 58.975 39.130 8.81 0.00 37.78 2.17
326 327 3.634504 TGCCATGCTCATGTAAAGGATT 58.365 40.909 8.81 0.00 37.11 3.01
327 328 3.301794 TGCCATGCTCATGTAAAGGAT 57.698 42.857 8.81 0.00 37.11 3.24
328 329 2.804986 TGCCATGCTCATGTAAAGGA 57.195 45.000 8.81 0.00 37.11 3.36
329 330 3.872511 TTTGCCATGCTCATGTAAAGG 57.127 42.857 8.81 0.00 37.11 3.11
330 331 7.924412 AGATTAATTTGCCATGCTCATGTAAAG 59.076 33.333 8.81 0.00 37.11 1.85
331 332 7.707464 CAGATTAATTTGCCATGCTCATGTAAA 59.293 33.333 8.81 9.52 37.11 2.01
332 333 7.147863 ACAGATTAATTTGCCATGCTCATGTAA 60.148 33.333 5.92 1.94 37.11 2.41
333 334 6.321945 ACAGATTAATTTGCCATGCTCATGTA 59.678 34.615 5.92 0.00 37.11 2.29
334 335 5.128171 ACAGATTAATTTGCCATGCTCATGT 59.872 36.000 5.92 0.00 37.11 3.21
335 336 5.597806 ACAGATTAATTTGCCATGCTCATG 58.402 37.500 5.92 2.97 38.51 3.07
336 337 5.864418 ACAGATTAATTTGCCATGCTCAT 57.136 34.783 5.92 0.00 0.00 2.90
337 338 5.664294 AACAGATTAATTTGCCATGCTCA 57.336 34.783 5.92 0.00 0.00 4.26
338 339 6.973229 AAAACAGATTAATTTGCCATGCTC 57.027 33.333 5.92 0.00 0.00 4.26
339 340 7.136289 CAAAAACAGATTAATTTGCCATGCT 57.864 32.000 5.92 0.00 0.00 3.79
351 352 8.991026 CCAGATTTTTCATGCAAAAACAGATTA 58.009 29.630 7.34 0.00 44.89 1.75
352 353 7.040961 CCCAGATTTTTCATGCAAAAACAGATT 60.041 33.333 7.34 0.00 44.89 2.40
353 354 6.428771 CCCAGATTTTTCATGCAAAAACAGAT 59.571 34.615 7.34 0.00 44.89 2.90
354 355 5.759273 CCCAGATTTTTCATGCAAAAACAGA 59.241 36.000 7.34 0.00 44.89 3.41
355 356 5.561339 GCCCAGATTTTTCATGCAAAAACAG 60.561 40.000 7.34 2.37 44.89 3.16
356 357 4.275443 GCCCAGATTTTTCATGCAAAAACA 59.725 37.500 7.34 0.00 44.89 2.83
357 358 4.611130 CGCCCAGATTTTTCATGCAAAAAC 60.611 41.667 7.34 5.16 44.89 2.43
358 359 3.497640 CGCCCAGATTTTTCATGCAAAAA 59.502 39.130 7.34 11.44 45.88 1.94
359 360 3.065655 CGCCCAGATTTTTCATGCAAAA 58.934 40.909 5.72 5.72 31.73 2.44
360 361 2.686235 CGCCCAGATTTTTCATGCAAA 58.314 42.857 0.00 0.00 0.00 3.68
361 362 1.672441 GCGCCCAGATTTTTCATGCAA 60.672 47.619 0.00 0.00 0.00 4.08
362 363 0.108709 GCGCCCAGATTTTTCATGCA 60.109 50.000 0.00 0.00 0.00 3.96
363 364 0.807275 GGCGCCCAGATTTTTCATGC 60.807 55.000 18.11 0.00 0.00 4.06
364 365 0.179103 GGGCGCCCAGATTTTTCATG 60.179 55.000 40.73 0.00 35.81 3.07
365 366 1.666209 CGGGCGCCCAGATTTTTCAT 61.666 55.000 42.78 0.00 35.37 2.57
366 367 2.339556 CGGGCGCCCAGATTTTTCA 61.340 57.895 42.78 0.00 35.37 2.69
367 368 2.489751 CGGGCGCCCAGATTTTTC 59.510 61.111 42.78 14.89 35.37 2.29
368 369 3.758931 GCGGGCGCCCAGATTTTT 61.759 61.111 42.78 0.00 35.37 1.94
369 370 4.740822 AGCGGGCGCCCAGATTTT 62.741 61.111 42.78 19.23 43.17 1.82
377 378 3.804193 CTTTTCTCAGCGGGCGCC 61.804 66.667 21.18 21.18 43.17 6.53
378 379 4.467062 GCTTTTCTCAGCGGGCGC 62.467 66.667 0.00 0.00 42.33 6.53
379 380 1.019278 TTAGCTTTTCTCAGCGGGCG 61.019 55.000 0.00 0.00 45.24 6.13
380 381 1.165270 TTTAGCTTTTCTCAGCGGGC 58.835 50.000 0.00 0.00 45.24 6.13
381 382 3.915437 TTTTTAGCTTTTCTCAGCGGG 57.085 42.857 0.00 0.00 45.24 6.13
382 383 4.082787 TCCATTTTTAGCTTTTCTCAGCGG 60.083 41.667 0.00 0.00 45.24 5.52
383 384 5.046910 TCCATTTTTAGCTTTTCTCAGCG 57.953 39.130 0.00 0.00 45.24 5.18
384 385 6.129088 CGTTTCCATTTTTAGCTTTTCTCAGC 60.129 38.462 0.00 0.00 40.44 4.26
385 386 7.138736 TCGTTTCCATTTTTAGCTTTTCTCAG 58.861 34.615 0.00 0.00 0.00 3.35
386 387 7.033530 TCGTTTCCATTTTTAGCTTTTCTCA 57.966 32.000 0.00 0.00 0.00 3.27
387 388 9.062674 GTATCGTTTCCATTTTTAGCTTTTCTC 57.937 33.333 0.00 0.00 0.00 2.87
388 389 8.573035 TGTATCGTTTCCATTTTTAGCTTTTCT 58.427 29.630 0.00 0.00 0.00 2.52
389 390 8.736751 TGTATCGTTTCCATTTTTAGCTTTTC 57.263 30.769 0.00 0.00 0.00 2.29
397 398 9.897744 CAGCATATATGTATCGTTTCCATTTTT 57.102 29.630 14.14 0.00 0.00 1.94
398 399 9.283768 TCAGCATATATGTATCGTTTCCATTTT 57.716 29.630 14.14 0.00 0.00 1.82
399 400 8.846943 TCAGCATATATGTATCGTTTCCATTT 57.153 30.769 14.14 0.00 0.00 2.32
400 401 8.314021 TCTCAGCATATATGTATCGTTTCCATT 58.686 33.333 14.14 0.00 0.00 3.16
401 402 7.840931 TCTCAGCATATATGTATCGTTTCCAT 58.159 34.615 14.14 0.00 0.00 3.41
402 403 7.227049 TCTCAGCATATATGTATCGTTTCCA 57.773 36.000 14.14 0.00 0.00 3.53
403 404 8.534333 TTTCTCAGCATATATGTATCGTTTCC 57.466 34.615 14.14 0.00 0.00 3.13
405 406 8.499162 GCTTTTCTCAGCATATATGTATCGTTT 58.501 33.333 14.14 0.00 39.83 3.60
406 407 7.875041 AGCTTTTCTCAGCATATATGTATCGTT 59.125 33.333 14.14 0.00 42.84 3.85
407 408 7.382110 AGCTTTTCTCAGCATATATGTATCGT 58.618 34.615 14.14 0.00 42.84 3.73
408 409 7.824704 AGCTTTTCTCAGCATATATGTATCG 57.175 36.000 14.14 2.02 42.84 2.92
412 413 9.790344 AGATTTAGCTTTTCTCAGCATATATGT 57.210 29.630 14.14 0.00 42.84 2.29
414 415 9.228949 CCAGATTTAGCTTTTCTCAGCATATAT 57.771 33.333 0.00 0.00 42.84 0.86
415 416 8.432013 TCCAGATTTAGCTTTTCTCAGCATATA 58.568 33.333 0.00 0.00 42.84 0.86
416 417 7.285566 TCCAGATTTAGCTTTTCTCAGCATAT 58.714 34.615 0.00 0.00 42.84 1.78
417 418 6.653020 TCCAGATTTAGCTTTTCTCAGCATA 58.347 36.000 0.00 0.00 42.84 3.14
418 419 5.503927 TCCAGATTTAGCTTTTCTCAGCAT 58.496 37.500 0.00 0.00 42.84 3.79
419 420 4.910195 TCCAGATTTAGCTTTTCTCAGCA 58.090 39.130 0.00 0.00 42.84 4.41
420 421 7.559590 TTATCCAGATTTAGCTTTTCTCAGC 57.440 36.000 0.00 0.00 40.44 4.26
450 451 9.743057 GGTAGCTCTGCATATATGTAGAAATAG 57.257 37.037 26.99 18.84 46.34 1.73
451 452 8.696374 GGGTAGCTCTGCATATATGTAGAAATA 58.304 37.037 26.99 20.54 46.34 1.40
452 453 7.560368 GGGTAGCTCTGCATATATGTAGAAAT 58.440 38.462 26.99 21.31 46.34 2.17
453 454 6.350194 CGGGTAGCTCTGCATATATGTAGAAA 60.350 42.308 26.99 16.30 46.34 2.52
454 455 5.125578 CGGGTAGCTCTGCATATATGTAGAA 59.874 44.000 26.99 14.70 46.34 2.10
455 456 4.640647 CGGGTAGCTCTGCATATATGTAGA 59.359 45.833 25.95 25.95 45.24 2.59
456 457 4.202060 CCGGGTAGCTCTGCATATATGTAG 60.202 50.000 21.15 21.15 41.16 2.74
530 535 3.118629 ACGACCAGATAATGTGCACTGAT 60.119 43.478 19.41 8.37 32.90 2.90
545 550 2.125753 GGAGCTGCAGACGACCAG 60.126 66.667 20.43 0.00 0.00 4.00
583 591 5.920840 GTCAAGCAGCGATAACATATCTGTA 59.079 40.000 0.00 0.00 33.36 2.74
688 696 1.148310 CCTTCAACCTGCACAGTACG 58.852 55.000 0.00 0.00 0.00 3.67
691 699 0.764890 TAGCCTTCAACCTGCACAGT 59.235 50.000 0.00 0.00 0.00 3.55
701 709 0.386476 ACACGACGTGTAGCCTTCAA 59.614 50.000 30.95 0.00 45.56 2.69
793 805 5.184096 TGTTCACTGTCAGGACTAGAGAATC 59.816 44.000 4.53 0.00 29.89 2.52
812 824 0.032130 GTCTCCAGCGAGTGTGTTCA 59.968 55.000 0.00 0.00 37.40 3.18
876 892 6.237901 TCCTTGCAGTGTGTTATTATTCAGT 58.762 36.000 0.00 0.00 0.00 3.41
916 933 5.183140 ACACTTTTAACTCTGTGCAGTTTGT 59.817 36.000 0.00 0.00 37.75 2.83
936 953 7.927629 AGATTGTTAAATGCAACATGAAACACT 59.072 29.630 0.00 3.90 38.18 3.55
977 994 3.417101 TGAAGGCGAGGAAAATTAGCAA 58.583 40.909 0.00 0.00 0.00 3.91
1026 1046 0.540365 AAGTTGGGATGGTGCCAGTG 60.540 55.000 0.00 0.00 39.66 3.66
1147 1167 0.539207 TGGTTGGCAGCTGCATACAA 60.539 50.000 37.63 28.42 44.36 2.41
1249 1269 4.130118 GCATAGAGATTTGGTGGTACCTG 58.870 47.826 14.36 0.00 39.58 4.00
1332 1355 3.745975 TGGAAGCGTTAGTGAATGAACTG 59.254 43.478 0.00 0.00 0.00 3.16
1425 1448 8.836413 TGTTCAAGATTCAAATACGAGAGTTTT 58.164 29.630 0.00 0.00 46.40 2.43
1492 1515 2.162681 GCAGTTGCCTAAGTTGTCCAT 58.837 47.619 0.00 0.00 34.31 3.41
1545 1568 1.000955 GGTACATGCCCTGATAGACGG 59.999 57.143 0.00 0.00 0.00 4.79
1755 1781 1.066358 CCGGTGAAGTAGTTTCCTCCC 60.066 57.143 0.00 0.00 34.77 4.30
2152 2178 2.321213 GGCCGCTTATGTTGCCTAG 58.679 57.895 0.00 0.00 40.77 3.02
2204 2232 5.195940 CAAGAGATGTTGGTATTGACCCAT 58.804 41.667 0.00 0.00 46.32 4.00
2235 2263 8.038492 ACAAATCTAGTTTCTCAAGAAGATGC 57.962 34.615 0.00 0.00 35.21 3.91
2238 2266 9.784531 AATGACAAATCTAGTTTCTCAAGAAGA 57.215 29.630 0.00 0.00 35.21 2.87
2355 2385 7.348080 TGCTAGCATGTGTAACTCTATTACT 57.652 36.000 14.93 0.00 38.04 2.24
2452 2482 3.244875 ACCATAGCAAGTGACACCATTCA 60.245 43.478 0.84 0.00 0.00 2.57
2454 2484 3.244875 TGACCATAGCAAGTGACACCATT 60.245 43.478 0.84 0.00 0.00 3.16
2519 2549 4.827692 AGCAAATGACGGTAGTGATACAA 58.172 39.130 0.00 0.00 0.00 2.41
2897 2927 6.071447 AGCCATTGTAATGCAGTACAAATCAA 60.071 34.615 34.92 18.55 44.80 2.57
2909 2939 1.548986 GCGTTGAGCCATTGTAATGC 58.451 50.000 0.00 0.00 40.81 3.56
2998 3028 6.649155 TGTTGCTAGGCTTTAGATCACAATA 58.351 36.000 0.00 0.00 0.00 1.90
3262 3326 2.376518 ACCACCCCCTGCATATTCTATG 59.623 50.000 0.00 0.00 0.00 2.23
3437 3501 3.647367 TGTAGCAGCTGGGGATCC 58.353 61.111 17.12 1.92 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.