Multiple sequence alignment - TraesCS3B01G071700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G071700 chr3B 100.000 3198 0 0 1862 5059 43277091 43273894 0.000000e+00 5906.0
1 TraesCS3B01G071700 chr3B 100.000 1436 0 0 1 1436 43278952 43277517 0.000000e+00 2652.0
2 TraesCS3B01G071700 chr3D 93.951 1273 63 12 3235 4501 26036364 26035100 0.000000e+00 1912.0
3 TraesCS3B01G071700 chr3D 89.634 984 77 14 460 1436 26038428 26037463 0.000000e+00 1229.0
4 TraesCS3B01G071700 chr3D 84.527 866 72 28 1866 2716 26037381 26036563 0.000000e+00 800.0
5 TraesCS3B01G071700 chr3D 98.026 152 3 0 4523 4674 26034923 26034772 1.080000e-66 265.0
6 TraesCS3B01G071700 chr3D 97.279 147 3 1 4743 4889 26031348 26031203 1.090000e-61 248.0
7 TraesCS3B01G071700 chr3D 97.080 137 4 0 4890 5026 26031175 26031039 1.100000e-56 231.0
8 TraesCS3B01G071700 chr3D 91.124 169 14 1 107 274 26038589 26038421 1.420000e-55 228.0
9 TraesCS3B01G071700 chr3D 86.829 205 18 3 2877 3073 26036564 26036361 2.370000e-53 220.0
10 TraesCS3B01G071700 chr3D 100.000 33 0 0 4497 4529 26034963 26034931 1.520000e-05 62.1
11 TraesCS3B01G071700 chr3A 92.295 1220 69 13 3024 4238 35762636 35763835 0.000000e+00 1709.0
12 TraesCS3B01G071700 chr3A 87.362 997 84 20 454 1433 35760488 35761459 0.000000e+00 1105.0
13 TraesCS3B01G071700 chr3A 83.643 862 79 24 1866 2717 35761544 35762353 0.000000e+00 754.0
14 TraesCS3B01G071700 chr3A 89.423 416 43 1 2875 3289 35762352 35762767 1.610000e-144 523.0
15 TraesCS3B01G071700 chr3A 92.814 167 11 1 2714 2879 93902785 93902619 1.820000e-59 241.0
16 TraesCS3B01G071700 chr2D 83.451 707 68 16 1877 2574 362472258 362472924 3.350000e-171 612.0
17 TraesCS3B01G071700 chr2D 83.168 707 70 15 1877 2574 5054679 5055345 7.250000e-168 601.0
18 TraesCS3B01G071700 chr2D 83.168 707 70 15 1877 2574 5063317 5063983 7.250000e-168 601.0
19 TraesCS3B01G071700 chr2D 96.739 184 5 1 278 460 595226860 595226677 6.360000e-79 305.0
20 TraesCS3B01G071700 chr2D 87.850 214 26 0 4523 4736 245386457 245386244 8.410000e-63 252.0
21 TraesCS3B01G071700 chr2D 92.529 174 11 2 2707 2878 387193866 387193693 1.090000e-61 248.0
22 TraesCS3B01G071700 chr2D 93.373 166 10 1 2715 2879 299891716 299891551 1.410000e-60 244.0
23 TraesCS3B01G071700 chr2D 77.917 240 33 7 4503 4736 190985518 190985293 1.140000e-26 132.0
24 TraesCS3B01G071700 chr5D 83.168 707 70 17 1877 2574 543129807 543130473 7.250000e-168 601.0
25 TraesCS3B01G071700 chr5D 90.654 214 19 1 4523 4736 435521707 435521495 2.980000e-72 283.0
26 TraesCS3B01G071700 chr4A 82.461 707 75 17 1877 2574 202491188 202491854 1.580000e-159 573.0
27 TraesCS3B01G071700 chr1B 82.733 666 67 17 1918 2574 52139733 52140359 2.660000e-152 549.0
28 TraesCS3B01G071700 chr1B 91.053 190 14 2 270 458 446026863 446026676 2.340000e-63 254.0
29 TraesCS3B01G071700 chr1B 92.353 170 12 1 2716 2884 436689151 436688982 1.820000e-59 241.0
30 TraesCS3B01G071700 chr1B 97.248 109 3 0 1 109 623579830 623579722 8.650000e-43 185.0
31 TraesCS3B01G071700 chr1B 94.118 119 7 0 1 119 552412828 552412710 1.120000e-41 182.0
32 TraesCS3B01G071700 chr1B 93.388 121 8 0 1 121 676514666 676514546 4.020000e-41 180.0
33 TraesCS3B01G071700 chr6D 82.583 666 67 13 1918 2574 105303900 105304525 4.460000e-150 542.0
34 TraesCS3B01G071700 chr6B 82.583 666 67 17 1918 2574 714133260 714133885 4.460000e-150 542.0
35 TraesCS3B01G071700 chr6B 86.829 205 20 6 2712 2912 656279400 656279199 6.590000e-54 222.0
36 TraesCS3B01G071700 chr6B 93.966 116 5 2 1 115 76594080 76594194 1.870000e-39 174.0
37 TraesCS3B01G071700 chr1D 84.673 535 54 15 1927 2452 472257872 472257357 4.520000e-140 508.0
38 TraesCS3B01G071700 chr1D 92.941 170 11 1 2716 2884 324412389 324412220 3.910000e-61 246.0
39 TraesCS3B01G071700 chr5B 83.091 550 51 14 2027 2574 669345811 669346320 3.570000e-126 462.0
40 TraesCS3B01G071700 chr4D 82.472 542 53 14 2035 2574 54740299 54739798 2.160000e-118 436.0
41 TraesCS3B01G071700 chr7A 83.789 475 48 15 1939 2403 67253193 67252738 1.680000e-114 424.0
42 TraesCS3B01G071700 chr7A 94.017 117 7 0 1 117 541040244 541040360 1.450000e-40 178.0
43 TraesCS3B01G071700 chr7A 89.630 135 12 2 1 134 227033545 227033412 2.420000e-38 171.0
44 TraesCS3B01G071700 chr2B 96.257 187 6 1 275 460 740226436 740226250 6.360000e-79 305.0
45 TraesCS3B01G071700 chr2B 82.843 204 16 12 275 463 527581557 527581358 1.130000e-36 165.0
46 TraesCS3B01G071700 chr7B 95.699 186 7 1 275 459 692194769 692194954 1.060000e-76 298.0
47 TraesCS3B01G071700 chr7B 90.152 132 9 3 1 132 582505761 582505888 8.710000e-38 169.0
48 TraesCS3B01G071700 chr1A 93.264 193 9 4 275 465 442664631 442664441 1.070000e-71 281.0
49 TraesCS3B01G071700 chr1A 92.308 156 10 2 275 429 15519706 15519552 2.370000e-53 220.0
50 TraesCS3B01G071700 chr1A 83.000 200 15 12 276 460 13740601 13740406 4.050000e-36 163.0
51 TraesCS3B01G071700 chr7D 93.865 163 9 1 2716 2877 500775618 500775456 1.410000e-60 244.0
52 TraesCS3B01G071700 chr2A 91.954 174 11 2 2716 2888 7920891 7921062 1.820000e-59 241.0
53 TraesCS3B01G071700 chr2A 89.247 186 18 2 2712 2895 135473393 135473208 1.100000e-56 231.0
54 TraesCS3B01G071700 chrUn 93.701 127 7 1 334 459 312869477 312869603 6.690000e-44 189.0
55 TraesCS3B01G071700 chrUn 93.701 127 7 1 334 459 312874352 312874226 6.690000e-44 189.0
56 TraesCS3B01G071700 chrUn 93.701 127 7 1 334 459 340781261 340781387 6.690000e-44 189.0
57 TraesCS3B01G071700 chrUn 96.907 97 1 2 278 374 76562531 76562437 1.460000e-35 161.0
58 TraesCS3B01G071700 chr6A 89.855 138 9 4 1 134 587875827 587875691 6.730000e-39 172.0
59 TraesCS3B01G071700 chr6A 89.130 138 10 4 1 134 587868925 587868789 3.130000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G071700 chr3B 43273894 43278952 5058 True 4279.000000 5906 100.000000 1 5059 2 chr3B.!!$R1 5058
1 TraesCS3B01G071700 chr3D 26031039 26038589 7550 True 577.233333 1912 93.161111 107 5026 9 chr3D.!!$R1 4919
2 TraesCS3B01G071700 chr3A 35760488 35763835 3347 False 1022.750000 1709 88.180750 454 4238 4 chr3A.!!$F1 3784
3 TraesCS3B01G071700 chr2D 362472258 362472924 666 False 612.000000 612 83.451000 1877 2574 1 chr2D.!!$F3 697
4 TraesCS3B01G071700 chr2D 5054679 5055345 666 False 601.000000 601 83.168000 1877 2574 1 chr2D.!!$F1 697
5 TraesCS3B01G071700 chr2D 5063317 5063983 666 False 601.000000 601 83.168000 1877 2574 1 chr2D.!!$F2 697
6 TraesCS3B01G071700 chr5D 543129807 543130473 666 False 601.000000 601 83.168000 1877 2574 1 chr5D.!!$F1 697
7 TraesCS3B01G071700 chr4A 202491188 202491854 666 False 573.000000 573 82.461000 1877 2574 1 chr4A.!!$F1 697
8 TraesCS3B01G071700 chr1B 52139733 52140359 626 False 549.000000 549 82.733000 1918 2574 1 chr1B.!!$F1 656
9 TraesCS3B01G071700 chr6D 105303900 105304525 625 False 542.000000 542 82.583000 1918 2574 1 chr6D.!!$F1 656
10 TraesCS3B01G071700 chr6B 714133260 714133885 625 False 542.000000 542 82.583000 1918 2574 1 chr6B.!!$F2 656
11 TraesCS3B01G071700 chr1D 472257357 472257872 515 True 508.000000 508 84.673000 1927 2452 1 chr1D.!!$R2 525
12 TraesCS3B01G071700 chr5B 669345811 669346320 509 False 462.000000 462 83.091000 2027 2574 1 chr5B.!!$F1 547
13 TraesCS3B01G071700 chr4D 54739798 54740299 501 True 436.000000 436 82.472000 2035 2574 1 chr4D.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
639 644 0.093705 GAGTTACGAGCTGCGCAAAG 59.906 55.0 13.05 0.81 46.04 2.77 F
1297 1321 0.168348 CTTTAGTGCTGCTGCTGCTG 59.832 55.0 27.67 16.73 40.48 4.41 F
1343 1367 0.250510 GGCCCGAATCCCTTCATCTC 60.251 60.0 0.00 0.00 0.00 2.75 F
2690 2753 0.393077 TATTTCTAGCCGGCTGGAGC 59.607 55.0 36.51 6.80 35.06 4.70 F
3559 3765 0.037734 TAGTCACTGGAGACGAGCCA 59.962 55.0 0.00 0.00 43.24 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2458 2519 0.109153 TGCATGAGAGTGGTGCAGTT 59.891 50.0 0.00 0.0 43.30 3.16 R
2462 2523 0.321034 TCAGTGCATGAGAGTGGTGC 60.321 55.0 0.00 0.0 39.26 5.01 R
3083 3155 0.680618 TGCCAGGCCAGAACAAATTG 59.319 50.0 9.64 0.0 0.00 2.32 R
3595 3801 0.032540 CGCCGTCATCCTGATCATCA 59.967 55.0 0.00 0.0 0.00 3.07 R
4738 8393 0.594796 CAGCAACCAAGAACAACGCC 60.595 55.0 0.00 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.093970 CGATTTCCGGATAATACAATTATAGCA 57.906 33.333 4.15 0.00 33.91 3.49
29 30 9.952030 TTTCCGGATAATACAATTATAGCATGA 57.048 29.630 4.15 0.00 0.00 3.07
30 31 9.952030 TTCCGGATAATACAATTATAGCATGAA 57.048 29.630 4.15 0.00 0.00 2.57
49 50 9.346005 AGCATGAATAACAGACAATTATCATGA 57.654 29.630 14.58 0.00 34.16 3.07
50 51 9.955208 GCATGAATAACAGACAATTATCATGAA 57.045 29.630 14.58 0.00 34.16 2.57
91 92 6.394345 AATCCCCTTATTATTGCCTCTAGG 57.606 41.667 0.00 0.00 38.53 3.02
92 93 4.175962 TCCCCTTATTATTGCCTCTAGGG 58.824 47.826 0.00 0.00 40.44 3.53
105 106 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
170 171 6.294473 ACTTAGAAGATAACATGATGGCCTG 58.706 40.000 3.32 0.00 0.00 4.85
171 172 4.096190 AGAAGATAACATGATGGCCTGG 57.904 45.455 3.32 0.00 0.00 4.45
177 178 0.251922 ACATGATGGCCTGGTTGCTT 60.252 50.000 3.32 0.00 0.00 3.91
185 186 0.877743 GCCTGGTTGCTTTGAGACTC 59.122 55.000 0.00 0.00 0.00 3.36
186 187 1.815408 GCCTGGTTGCTTTGAGACTCA 60.815 52.381 0.00 0.00 0.00 3.41
205 206 2.620585 TCAATTTGCCACGTGTCAATCA 59.379 40.909 13.37 0.00 0.00 2.57
229 230 3.118592 GGGAGGTGGTCTCACAATAGAAG 60.119 52.174 0.00 0.00 45.16 2.85
243 244 1.753930 TAGAAGGCGTACGATGTGGA 58.246 50.000 21.65 0.00 0.00 4.02
245 246 1.067212 AGAAGGCGTACGATGTGGATC 59.933 52.381 21.65 6.50 0.00 3.36
276 277 5.389859 TTTTTCAGTTGCCATATGGACAG 57.610 39.130 26.47 12.27 37.39 3.51
277 278 3.719268 TTCAGTTGCCATATGGACAGT 57.281 42.857 26.47 10.32 37.39 3.55
278 279 2.989909 TCAGTTGCCATATGGACAGTG 58.010 47.619 26.47 20.77 37.39 3.66
279 280 2.019249 CAGTTGCCATATGGACAGTGG 58.981 52.381 26.47 10.99 37.39 4.00
282 283 4.462394 CCATATGGACAGTGGCGG 57.538 61.111 17.49 0.00 37.39 6.13
283 284 1.829456 CCATATGGACAGTGGCGGA 59.171 57.895 17.49 0.00 37.39 5.54
284 285 0.250038 CCATATGGACAGTGGCGGAG 60.250 60.000 17.49 0.00 37.39 4.63
285 286 0.752658 CATATGGACAGTGGCGGAGA 59.247 55.000 0.00 0.00 0.00 3.71
286 287 0.753262 ATATGGACAGTGGCGGAGAC 59.247 55.000 0.00 0.00 0.00 3.36
334 335 4.990526 CCCCCTAACATCATCTATTTGCT 58.009 43.478 0.00 0.00 0.00 3.91
335 336 4.763793 CCCCCTAACATCATCTATTTGCTG 59.236 45.833 0.00 0.00 0.00 4.41
336 337 4.217118 CCCCTAACATCATCTATTTGCTGC 59.783 45.833 0.00 0.00 0.00 5.25
337 338 4.823442 CCCTAACATCATCTATTTGCTGCA 59.177 41.667 0.00 0.00 0.00 4.41
338 339 5.475909 CCCTAACATCATCTATTTGCTGCAT 59.524 40.000 1.84 0.00 0.00 3.96
339 340 6.656270 CCCTAACATCATCTATTTGCTGCATA 59.344 38.462 1.84 0.00 0.00 3.14
340 341 7.338703 CCCTAACATCATCTATTTGCTGCATAT 59.661 37.037 1.84 7.02 0.00 1.78
341 342 8.737175 CCTAACATCATCTATTTGCTGCATATT 58.263 33.333 10.75 0.00 0.00 1.28
344 345 9.472361 AACATCATCTATTTGCTGCATATTTTC 57.528 29.630 10.75 0.00 0.00 2.29
345 346 8.857098 ACATCATCTATTTGCTGCATATTTTCT 58.143 29.630 10.75 0.00 0.00 2.52
346 347 9.129209 CATCATCTATTTGCTGCATATTTTCTG 57.871 33.333 10.75 5.06 0.00 3.02
347 348 8.454570 TCATCTATTTGCTGCATATTTTCTGA 57.545 30.769 10.75 6.95 0.00 3.27
348 349 9.074576 TCATCTATTTGCTGCATATTTTCTGAT 57.925 29.630 10.75 5.54 0.00 2.90
349 350 9.129209 CATCTATTTGCTGCATATTTTCTGATG 57.871 33.333 10.75 11.95 0.00 3.07
350 351 8.454570 TCTATTTGCTGCATATTTTCTGATGA 57.545 30.769 10.75 0.00 0.00 2.92
351 352 8.905850 TCTATTTGCTGCATATTTTCTGATGAA 58.094 29.630 10.75 0.00 0.00 2.57
352 353 7.766219 ATTTGCTGCATATTTTCTGATGAAC 57.234 32.000 1.84 0.00 31.02 3.18
353 354 5.900865 TGCTGCATATTTTCTGATGAACA 57.099 34.783 0.00 0.00 31.02 3.18
354 355 5.886992 TGCTGCATATTTTCTGATGAACAG 58.113 37.500 0.00 0.00 46.97 3.16
355 356 5.416639 TGCTGCATATTTTCTGATGAACAGT 59.583 36.000 0.00 0.00 45.86 3.55
356 357 5.742453 GCTGCATATTTTCTGATGAACAGTG 59.258 40.000 0.00 0.00 45.86 3.66
357 358 5.643664 TGCATATTTTCTGATGAACAGTGC 58.356 37.500 0.00 0.00 45.86 4.40
358 359 5.183522 TGCATATTTTCTGATGAACAGTGCA 59.816 36.000 0.00 0.00 43.57 4.57
359 360 6.094719 GCATATTTTCTGATGAACAGTGCAA 58.905 36.000 0.00 0.00 45.86 4.08
360 361 6.587226 GCATATTTTCTGATGAACAGTGCAAA 59.413 34.615 0.00 0.00 45.86 3.68
361 362 7.116662 GCATATTTTCTGATGAACAGTGCAAAA 59.883 33.333 0.00 0.00 45.86 2.44
362 363 9.146984 CATATTTTCTGATGAACAGTGCAAAAT 57.853 29.630 0.00 0.00 45.86 1.82
363 364 9.715121 ATATTTTCTGATGAACAGTGCAAAATT 57.285 25.926 0.00 0.00 45.86 1.82
365 366 8.578308 TTTTCTGATGAACAGTGCAAAATTAG 57.422 30.769 0.00 0.00 45.86 1.73
366 367 6.882610 TCTGATGAACAGTGCAAAATTAGT 57.117 33.333 0.00 0.00 45.86 2.24
367 368 6.671190 TCTGATGAACAGTGCAAAATTAGTG 58.329 36.000 0.00 0.00 45.86 2.74
368 369 6.486320 TCTGATGAACAGTGCAAAATTAGTGA 59.514 34.615 0.00 0.00 45.86 3.41
369 370 7.175467 TCTGATGAACAGTGCAAAATTAGTGAT 59.825 33.333 0.00 0.00 45.86 3.06
370 371 7.085746 TGATGAACAGTGCAAAATTAGTGATG 58.914 34.615 0.00 0.00 0.00 3.07
371 372 6.631971 TGAACAGTGCAAAATTAGTGATGA 57.368 33.333 0.00 0.00 0.00 2.92
372 373 7.218228 TGAACAGTGCAAAATTAGTGATGAT 57.782 32.000 0.00 0.00 0.00 2.45
373 374 7.660112 TGAACAGTGCAAAATTAGTGATGATT 58.340 30.769 0.00 0.00 0.00 2.57
374 375 8.143193 TGAACAGTGCAAAATTAGTGATGATTT 58.857 29.630 0.00 0.00 0.00 2.17
375 376 7.878477 ACAGTGCAAAATTAGTGATGATTTG 57.122 32.000 0.00 0.00 34.84 2.32
382 383 8.692110 CAAAATTAGTGATGATTTGCTGCTAA 57.308 30.769 0.00 0.00 0.00 3.09
383 384 9.142515 CAAAATTAGTGATGATTTGCTGCTAAA 57.857 29.630 0.00 0.45 0.00 1.85
384 385 9.880157 AAAATTAGTGATGATTTGCTGCTAAAT 57.120 25.926 0.00 5.55 33.19 1.40
385 386 9.880157 AAATTAGTGATGATTTGCTGCTAAATT 57.120 25.926 0.00 0.00 30.78 1.82
389 390 8.867112 AGTGATGATTTGCTGCTAAATTAATG 57.133 30.769 0.00 0.00 30.78 1.90
390 391 7.437267 AGTGATGATTTGCTGCTAAATTAATGC 59.563 33.333 0.00 0.00 30.78 3.56
391 392 7.437267 GTGATGATTTGCTGCTAAATTAATGCT 59.563 33.333 0.00 0.00 30.78 3.79
392 393 7.982919 TGATGATTTGCTGCTAAATTAATGCTT 59.017 29.630 0.00 0.00 30.78 3.91
393 394 8.726870 ATGATTTGCTGCTAAATTAATGCTTT 57.273 26.923 0.00 0.00 30.78 3.51
394 395 7.966111 TGATTTGCTGCTAAATTAATGCTTTG 58.034 30.769 0.00 0.00 30.78 2.77
395 396 6.724694 TTTGCTGCTAAATTAATGCTTTGG 57.275 33.333 0.00 0.00 0.00 3.28
396 397 4.183101 TGCTGCTAAATTAATGCTTTGGC 58.817 39.130 0.00 2.43 39.63 4.52
397 398 3.557185 GCTGCTAAATTAATGCTTTGGCC 59.443 43.478 0.00 0.00 38.77 5.36
398 399 4.122046 CTGCTAAATTAATGCTTTGGCCC 58.878 43.478 0.00 0.00 38.77 5.80
399 400 3.774216 TGCTAAATTAATGCTTTGGCCCT 59.226 39.130 0.00 0.00 38.77 5.19
400 401 4.141959 TGCTAAATTAATGCTTTGGCCCTC 60.142 41.667 0.00 0.00 38.77 4.30
401 402 3.912496 AAATTAATGCTTTGGCCCTCC 57.088 42.857 0.00 0.00 37.74 4.30
402 403 2.854736 ATTAATGCTTTGGCCCTCCT 57.145 45.000 0.00 0.00 37.74 3.69
403 404 2.143876 TTAATGCTTTGGCCCTCCTC 57.856 50.000 0.00 0.00 37.74 3.71
404 405 0.998928 TAATGCTTTGGCCCTCCTCA 59.001 50.000 0.00 0.00 37.74 3.86
405 406 0.114954 AATGCTTTGGCCCTCCTCAA 59.885 50.000 0.00 0.00 37.74 3.02
406 407 0.337428 ATGCTTTGGCCCTCCTCAAT 59.663 50.000 0.00 0.00 37.74 2.57
407 408 0.114954 TGCTTTGGCCCTCCTCAATT 59.885 50.000 0.00 0.00 37.74 2.32
408 409 1.357420 TGCTTTGGCCCTCCTCAATTA 59.643 47.619 0.00 0.00 37.74 1.40
409 410 2.027385 GCTTTGGCCCTCCTCAATTAG 58.973 52.381 0.00 0.00 0.00 1.73
410 411 2.621668 GCTTTGGCCCTCCTCAATTAGT 60.622 50.000 0.00 0.00 0.00 2.24
411 412 3.701664 CTTTGGCCCTCCTCAATTAGTT 58.298 45.455 0.00 0.00 0.00 2.24
412 413 3.825908 TTGGCCCTCCTCAATTAGTTT 57.174 42.857 0.00 0.00 0.00 2.66
413 414 4.938575 TTGGCCCTCCTCAATTAGTTTA 57.061 40.909 0.00 0.00 0.00 2.01
414 415 4.938575 TGGCCCTCCTCAATTAGTTTAA 57.061 40.909 0.00 0.00 0.00 1.52
415 416 4.855340 TGGCCCTCCTCAATTAGTTTAAG 58.145 43.478 0.00 0.00 0.00 1.85
416 417 4.538490 TGGCCCTCCTCAATTAGTTTAAGA 59.462 41.667 0.00 0.00 0.00 2.10
417 418 5.193728 TGGCCCTCCTCAATTAGTTTAAGAT 59.806 40.000 0.00 0.00 0.00 2.40
418 419 5.765677 GGCCCTCCTCAATTAGTTTAAGATC 59.234 44.000 0.00 0.00 0.00 2.75
419 420 6.357367 GCCCTCCTCAATTAGTTTAAGATCA 58.643 40.000 0.00 0.00 0.00 2.92
420 421 6.261158 GCCCTCCTCAATTAGTTTAAGATCAC 59.739 42.308 0.00 0.00 0.00 3.06
421 422 7.569240 CCCTCCTCAATTAGTTTAAGATCACT 58.431 38.462 0.00 0.00 0.00 3.41
422 423 8.049721 CCCTCCTCAATTAGTTTAAGATCACTT 58.950 37.037 0.00 0.00 39.81 3.16
423 424 8.887717 CCTCCTCAATTAGTTTAAGATCACTTG 58.112 37.037 0.00 0.00 37.53 3.16
424 425 8.792830 TCCTCAATTAGTTTAAGATCACTTGG 57.207 34.615 0.00 0.00 37.53 3.61
425 426 7.336931 TCCTCAATTAGTTTAAGATCACTTGGC 59.663 37.037 0.00 0.00 37.53 4.52
426 427 7.391148 TCAATTAGTTTAAGATCACTTGGCC 57.609 36.000 0.00 0.00 37.53 5.36
427 428 6.377146 TCAATTAGTTTAAGATCACTTGGCCC 59.623 38.462 0.00 0.00 37.53 5.80
428 429 3.087370 AGTTTAAGATCACTTGGCCCC 57.913 47.619 0.00 0.00 37.53 5.80
429 430 2.100197 GTTTAAGATCACTTGGCCCCC 58.900 52.381 0.00 0.00 37.53 5.40
493 494 4.250305 GAGTGTGGCCGTGTGGGT 62.250 66.667 0.00 0.00 38.44 4.51
498 499 2.517402 TGGCCGTGTGGGTTGAAC 60.517 61.111 0.00 0.00 38.44 3.18
509 510 6.127869 CCGTGTGGGTTGAACATTAAATATCA 60.128 38.462 0.00 0.00 0.00 2.15
512 513 9.301153 GTGTGGGTTGAACATTAAATATCATTC 57.699 33.333 0.00 0.00 0.00 2.67
568 569 9.944079 ATATACAATGTATGATCTAGGCTAGGT 57.056 33.333 20.92 14.92 0.00 3.08
571 572 5.544441 ATGTATGATCTAGGCTAGGTCCT 57.456 43.478 27.56 21.48 35.00 3.85
580 581 0.678950 GGCTAGGTCCTCTGAGATGC 59.321 60.000 6.17 1.29 0.00 3.91
598 599 2.903547 CGGGGTCTTTGTGCAACCG 61.904 63.158 0.00 0.00 34.36 4.44
599 600 1.527380 GGGGTCTTTGTGCAACCGA 60.527 57.895 0.00 0.00 34.36 4.69
622 627 3.377172 ACCGGTCTTGAAAACACTTTGAG 59.623 43.478 0.00 0.00 0.00 3.02
639 644 0.093705 GAGTTACGAGCTGCGCAAAG 59.906 55.000 13.05 0.81 46.04 2.77
641 646 2.677003 TTACGAGCTGCGCAAAGGC 61.677 57.895 13.05 12.35 46.04 4.35
648 654 0.587768 GCTGCGCAAAGGCAAAAATT 59.412 45.000 13.05 0.00 43.39 1.82
691 698 4.107622 GTGCATGTGCTAAAAAGCCATAG 58.892 43.478 6.55 0.00 42.66 2.23
696 703 7.025963 GCATGTGCTAAAAAGCCATAGATATC 58.974 38.462 0.00 0.00 38.21 1.63
716 723 4.421033 TCTGTAGCTCTCACTTAACGTG 57.579 45.455 0.00 0.00 45.18 4.49
770 779 8.957466 ACTTTAGTATCTAGATATATGCGTGCA 58.043 33.333 15.43 0.00 0.00 4.57
771 780 9.958234 CTTTAGTATCTAGATATATGCGTGCAT 57.042 33.333 15.43 12.54 40.19 3.96
845 856 4.487714 TTCCACCTTTATGAAGCTCGAT 57.512 40.909 0.00 0.00 0.00 3.59
853 864 5.178996 CCTTTATGAAGCTCGATCTCCATTG 59.821 44.000 0.00 0.00 0.00 2.82
862 873 5.496133 CTCGATCTCCATTGAGCATTTTT 57.504 39.130 0.00 0.00 38.58 1.94
921 936 6.776603 AGTAATAGTCGAGTGCCTATAAACCT 59.223 38.462 2.10 0.00 0.00 3.50
1296 1320 0.959372 CCTTTAGTGCTGCTGCTGCT 60.959 55.000 27.67 15.72 40.48 4.24
1297 1321 0.168348 CTTTAGTGCTGCTGCTGCTG 59.832 55.000 27.67 16.73 40.48 4.41
1343 1367 0.250510 GGCCCGAATCCCTTCATCTC 60.251 60.000 0.00 0.00 0.00 2.75
1348 1372 3.006323 CCCGAATCCCTTCATCTCTGTAG 59.994 52.174 0.00 0.00 0.00 2.74
1349 1373 3.639094 CCGAATCCCTTCATCTCTGTAGT 59.361 47.826 0.00 0.00 0.00 2.73
1350 1374 4.100189 CCGAATCCCTTCATCTCTGTAGTT 59.900 45.833 0.00 0.00 0.00 2.24
1392 1418 5.705400 AGGGGATTAATTGGGTAATCTGTG 58.295 41.667 5.25 0.00 39.47 3.66
1909 1936 2.005451 CCTGCTGCAGTTGATAGTGTC 58.995 52.381 26.41 0.00 0.00 3.67
1980 2007 3.987868 CGCTAAATTAGGCTTATGCTCGA 59.012 43.478 1.88 0.00 39.59 4.04
1993 2024 5.530519 TTATGCTCGATTTGTGTCAGTTC 57.469 39.130 0.00 0.00 0.00 3.01
2070 2106 4.720649 TCTGCAGTTGATGTAGACTACC 57.279 45.455 14.67 0.00 44.63 3.18
2075 2111 4.985409 GCAGTTGATGTAGACTACCATAGC 59.015 45.833 10.14 2.25 0.00 2.97
2083 2119 4.755629 TGTAGACTACCATAGCGATGAGTC 59.244 45.833 16.18 16.18 37.26 3.36
2084 2120 3.821748 AGACTACCATAGCGATGAGTCA 58.178 45.455 22.17 0.00 38.50 3.41
2087 2123 3.954904 ACTACCATAGCGATGAGTCACTT 59.045 43.478 8.55 0.00 34.73 3.16
2088 2124 3.444703 ACCATAGCGATGAGTCACTTC 57.555 47.619 8.55 0.00 34.73 3.01
2091 2127 3.801050 CCATAGCGATGAGTCACTTCTTG 59.199 47.826 8.55 0.00 34.73 3.02
2092 2128 1.719600 AGCGATGAGTCACTTCTTGC 58.280 50.000 0.00 0.00 0.00 4.01
2093 2129 1.001293 AGCGATGAGTCACTTCTTGCA 59.999 47.619 0.00 0.00 0.00 4.08
2094 2130 2.005451 GCGATGAGTCACTTCTTGCAT 58.995 47.619 0.00 0.00 0.00 3.96
2095 2131 3.118992 AGCGATGAGTCACTTCTTGCATA 60.119 43.478 0.00 0.00 0.00 3.14
2099 2135 6.036470 CGATGAGTCACTTCTTGCATAAGTA 58.964 40.000 13.01 0.92 35.44 2.24
2101 2137 7.223582 CGATGAGTCACTTCTTGCATAAGTATT 59.776 37.037 13.01 4.28 35.44 1.89
2103 2139 7.615403 TGAGTCACTTCTTGCATAAGTATTCT 58.385 34.615 13.01 11.38 35.44 2.40
2106 2142 8.317679 AGTCACTTCTTGCATAAGTATTCTCTT 58.682 33.333 13.01 0.00 35.44 2.85
2107 2143 8.940952 GTCACTTCTTGCATAAGTATTCTCTTT 58.059 33.333 13.01 0.00 35.44 2.52
2108 2144 9.507329 TCACTTCTTGCATAAGTATTCTCTTTT 57.493 29.630 13.01 0.00 35.44 2.27
2125 2161 8.975410 TTCTCTTTTTGATGTAATCTTGCATG 57.025 30.769 0.00 0.00 45.81 4.06
2128 2164 8.339344 TCTTTTTGATGTAATCTTGCATGAGA 57.661 30.769 8.40 0.00 45.81 3.27
2129 2165 8.963725 TCTTTTTGATGTAATCTTGCATGAGAT 58.036 29.630 8.40 1.69 45.81 2.75
2135 2171 6.519679 TGTAATCTTGCATGAGATTTTGCT 57.480 33.333 16.71 0.00 42.24 3.91
2144 2181 4.618927 GCATGAGATTTTGCTTGTGCCTTA 60.619 41.667 0.00 0.00 38.71 2.69
2145 2182 5.472148 CATGAGATTTTGCTTGTGCCTTAA 58.528 37.500 0.00 0.00 38.71 1.85
2146 2183 5.726980 TGAGATTTTGCTTGTGCCTTAAT 57.273 34.783 0.00 0.00 38.71 1.40
2158 2195 6.486657 GCTTGTGCCTTAATCCATGAGTAATA 59.513 38.462 0.00 0.00 0.00 0.98
2161 2198 8.621532 TGTGCCTTAATCCATGAGTAATATTC 57.378 34.615 0.00 0.00 0.00 1.75
2162 2199 7.665559 TGTGCCTTAATCCATGAGTAATATTCC 59.334 37.037 0.00 0.00 0.00 3.01
2164 2201 6.879458 GCCTTAATCCATGAGTAATATTCCGT 59.121 38.462 0.00 0.00 0.00 4.69
2166 2203 8.314751 CCTTAATCCATGAGTAATATTCCGTCT 58.685 37.037 0.00 0.00 0.00 4.18
2204 2241 4.795795 CGTCTTACTACAGTCTTGATGCTG 59.204 45.833 0.00 0.00 38.58 4.41
2220 2257 3.251479 TGCTGTAGTATGGCTCTGTTG 57.749 47.619 0.00 0.00 0.00 3.33
2253 2290 2.008329 TCGTTACTTGTTTTGTGCGGT 58.992 42.857 0.00 0.00 0.00 5.68
2320 2357 6.874134 GGACTCTGCTCTTTTCACAGTTATAA 59.126 38.462 0.00 0.00 33.12 0.98
2325 2364 9.066892 TCTGCTCTTTTCACAGTTATAATGTTT 57.933 29.630 0.00 0.00 33.12 2.83
2326 2365 9.334693 CTGCTCTTTTCACAGTTATAATGTTTC 57.665 33.333 0.00 0.00 0.00 2.78
2327 2366 9.066892 TGCTCTTTTCACAGTTATAATGTTTCT 57.933 29.630 0.00 0.00 0.00 2.52
2328 2367 9.899226 GCTCTTTTCACAGTTATAATGTTTCTT 57.101 29.630 0.00 0.00 0.00 2.52
2333 2372 9.944663 TTTCACAGTTATAATGTTTCTTGTCAC 57.055 29.630 0.00 0.00 0.00 3.67
2399 2438 7.218773 CCGCTGTTATGATAAACTGTTCAATTG 59.781 37.037 0.00 0.00 32.61 2.32
2439 2479 2.122783 TTTTCTACGATGGCAAGGGG 57.877 50.000 0.00 0.00 0.00 4.79
2461 2522 4.853924 CACTGGTTGCTTTCCATTAACT 57.146 40.909 0.00 0.00 34.26 2.24
2462 2523 4.549458 CACTGGTTGCTTTCCATTAACTG 58.451 43.478 0.00 0.00 34.26 3.16
2463 2524 3.005791 ACTGGTTGCTTTCCATTAACTGC 59.994 43.478 0.00 0.00 34.26 4.40
2464 2525 2.961741 TGGTTGCTTTCCATTAACTGCA 59.038 40.909 0.00 0.00 0.00 4.41
2465 2526 3.243704 TGGTTGCTTTCCATTAACTGCAC 60.244 43.478 0.00 0.00 0.00 4.57
2466 2527 3.317150 GTTGCTTTCCATTAACTGCACC 58.683 45.455 0.00 0.00 0.00 5.01
2467 2528 2.591923 TGCTTTCCATTAACTGCACCA 58.408 42.857 0.00 0.00 0.00 4.17
2468 2529 2.295909 TGCTTTCCATTAACTGCACCAC 59.704 45.455 0.00 0.00 0.00 4.16
2469 2530 2.558359 GCTTTCCATTAACTGCACCACT 59.442 45.455 0.00 0.00 0.00 4.00
2470 2531 3.366374 GCTTTCCATTAACTGCACCACTC 60.366 47.826 0.00 0.00 0.00 3.51
2471 2532 3.788227 TTCCATTAACTGCACCACTCT 57.212 42.857 0.00 0.00 0.00 3.24
2472 2533 3.334583 TCCATTAACTGCACCACTCTC 57.665 47.619 0.00 0.00 0.00 3.20
2520 2581 4.158764 TCAAACAATCCGTTTTGACAAGGT 59.841 37.500 1.99 0.00 45.79 3.50
2533 2594 2.174639 TGACAAGGTTCACTGATGGGTT 59.825 45.455 0.00 0.00 0.00 4.11
2648 2710 8.902806 TCTAAGGTTCCAACATAAAAGCATATG 58.097 33.333 0.00 0.00 38.86 1.78
2690 2753 0.393077 TATTTCTAGCCGGCTGGAGC 59.607 55.000 36.51 6.80 35.06 4.70
2709 2773 2.026822 AGCAGATTGAACCCGAACAGAT 60.027 45.455 0.00 0.00 0.00 2.90
2715 2779 5.657302 AGATTGAACCCGAACAGATAGTAGT 59.343 40.000 0.00 0.00 0.00 2.73
2716 2780 6.832384 AGATTGAACCCGAACAGATAGTAGTA 59.168 38.462 0.00 0.00 0.00 1.82
2717 2781 5.824904 TGAACCCGAACAGATAGTAGTAC 57.175 43.478 0.00 0.00 0.00 2.73
2718 2782 5.503927 TGAACCCGAACAGATAGTAGTACT 58.496 41.667 8.14 8.14 0.00 2.73
2719 2783 5.587844 TGAACCCGAACAGATAGTAGTACTC 59.412 44.000 5.96 0.00 0.00 2.59
2720 2784 4.459330 ACCCGAACAGATAGTAGTACTCC 58.541 47.826 5.96 0.28 0.00 3.85
2721 2785 3.819902 CCCGAACAGATAGTAGTACTCCC 59.180 52.174 5.96 0.00 0.00 4.30
2722 2786 4.446023 CCCGAACAGATAGTAGTACTCCCT 60.446 50.000 5.96 2.39 0.00 4.20
2723 2787 4.756135 CCGAACAGATAGTAGTACTCCCTC 59.244 50.000 5.96 2.97 0.00 4.30
2724 2788 4.756135 CGAACAGATAGTAGTACTCCCTCC 59.244 50.000 5.96 0.00 0.00 4.30
2725 2789 4.354893 ACAGATAGTAGTACTCCCTCCG 57.645 50.000 5.96 0.00 0.00 4.63
2726 2790 3.715834 ACAGATAGTAGTACTCCCTCCGT 59.284 47.826 5.96 0.00 0.00 4.69
2727 2791 4.165758 ACAGATAGTAGTACTCCCTCCGTT 59.834 45.833 5.96 0.00 0.00 4.44
2728 2792 4.756135 CAGATAGTAGTACTCCCTCCGTTC 59.244 50.000 5.96 0.00 0.00 3.95
2729 2793 2.433662 AGTAGTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
2730 2794 1.921748 AGTAGTACTCCCTCCGTTCCT 59.078 52.381 0.00 0.00 0.00 3.36
2731 2795 3.118531 AGTAGTACTCCCTCCGTTCCTA 58.881 50.000 0.00 0.00 0.00 2.94
2732 2796 3.525199 AGTAGTACTCCCTCCGTTCCTAA 59.475 47.826 0.00 0.00 0.00 2.69
2733 2797 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2734 2798 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2735 2799 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2736 2800 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2737 2801 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
2738 2802 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
2739 2803 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2740 2804 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2741 2805 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2742 2806 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2743 2807 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2744 2808 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2745 2809 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2746 2810 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2772 2836 7.371936 AGAGATTCATTAAGGACTACATACGC 58.628 38.462 0.00 0.00 0.00 4.42
2773 2837 7.014326 AGAGATTCATTAAGGACTACATACGCA 59.986 37.037 0.00 0.00 0.00 5.24
2774 2838 7.148641 AGATTCATTAAGGACTACATACGCAG 58.851 38.462 0.00 0.00 0.00 5.18
2775 2839 4.617959 TCATTAAGGACTACATACGCAGC 58.382 43.478 0.00 0.00 0.00 5.25
2776 2840 4.098807 TCATTAAGGACTACATACGCAGCA 59.901 41.667 0.00 0.00 0.00 4.41
2777 2841 4.459390 TTAAGGACTACATACGCAGCAA 57.541 40.909 0.00 0.00 0.00 3.91
2778 2842 3.328382 AAGGACTACATACGCAGCAAA 57.672 42.857 0.00 0.00 0.00 3.68
2779 2843 3.328382 AGGACTACATACGCAGCAAAA 57.672 42.857 0.00 0.00 0.00 2.44
2780 2844 3.873910 AGGACTACATACGCAGCAAAAT 58.126 40.909 0.00 0.00 0.00 1.82
2781 2845 3.623060 AGGACTACATACGCAGCAAAATG 59.377 43.478 0.00 0.00 0.00 2.32
2782 2846 3.621268 GGACTACATACGCAGCAAAATGA 59.379 43.478 5.79 0.00 0.00 2.57
2783 2847 4.260375 GGACTACATACGCAGCAAAATGAG 60.260 45.833 5.79 2.75 0.00 2.90
2784 2848 4.253685 ACTACATACGCAGCAAAATGAGT 58.746 39.130 5.79 0.00 37.05 3.41
2785 2849 3.476295 ACATACGCAGCAAAATGAGTG 57.524 42.857 5.79 0.00 34.83 3.51
2786 2850 3.073678 ACATACGCAGCAAAATGAGTGA 58.926 40.909 5.79 0.00 34.83 3.41
2787 2851 3.501828 ACATACGCAGCAAAATGAGTGAA 59.498 39.130 5.79 0.00 34.83 3.18
2788 2852 4.156556 ACATACGCAGCAAAATGAGTGAAT 59.843 37.500 5.79 0.00 34.83 2.57
2789 2853 3.207474 ACGCAGCAAAATGAGTGAATC 57.793 42.857 0.00 0.00 31.59 2.52
2790 2854 2.816087 ACGCAGCAAAATGAGTGAATCT 59.184 40.909 0.00 0.00 31.59 2.40
2791 2855 4.002982 ACGCAGCAAAATGAGTGAATCTA 58.997 39.130 0.00 0.00 31.59 1.98
2792 2856 4.142816 ACGCAGCAAAATGAGTGAATCTAC 60.143 41.667 0.00 0.00 31.59 2.59
2793 2857 4.142838 CGCAGCAAAATGAGTGAATCTACA 60.143 41.667 0.00 0.00 0.00 2.74
2794 2858 5.091431 GCAGCAAAATGAGTGAATCTACAC 58.909 41.667 0.00 0.00 40.60 2.90
2808 2872 9.469097 AGTGAATCTACACTCTAAAGTATGTCT 57.531 33.333 0.00 0.00 46.36 3.41
2836 2900 6.911250 ACATCCGTATGTAGTCCATATTGA 57.089 37.500 0.00 0.00 44.66 2.57
2837 2901 7.297936 ACATCCGTATGTAGTCCATATTGAA 57.702 36.000 0.00 0.00 44.66 2.69
2838 2902 7.732025 ACATCCGTATGTAGTCCATATTGAAA 58.268 34.615 0.00 0.00 44.66 2.69
2839 2903 8.375506 ACATCCGTATGTAGTCCATATTGAAAT 58.624 33.333 0.00 0.00 44.66 2.17
2840 2904 8.873830 CATCCGTATGTAGTCCATATTGAAATC 58.126 37.037 0.00 0.00 38.29 2.17
2841 2905 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
2842 2906 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
2843 2907 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
2851 2915 8.907885 AGTCCATATTGAAATCTCTAAAAAGGC 58.092 33.333 0.00 0.00 0.00 4.35
2852 2916 8.907885 GTCCATATTGAAATCTCTAAAAAGGCT 58.092 33.333 0.00 0.00 0.00 4.58
2853 2917 9.479549 TCCATATTGAAATCTCTAAAAAGGCTT 57.520 29.630 0.00 0.00 0.00 4.35
2871 2935 8.768501 AAAGGCTTATATTTAGAAAAGGAGGG 57.231 34.615 0.00 0.00 0.00 4.30
2872 2936 7.707467 AGGCTTATATTTAGAAAAGGAGGGA 57.293 36.000 0.00 0.00 0.00 4.20
2873 2937 7.519057 AGGCTTATATTTAGAAAAGGAGGGAC 58.481 38.462 0.00 0.00 0.00 4.46
2950 3014 0.991920 TTGAGAAACCTAGCTGGGGG 59.008 55.000 21.53 10.62 41.11 5.40
2967 3031 1.340697 GGGGCTTTGGTTGTAGTAGGG 60.341 57.143 0.00 0.00 0.00 3.53
2980 3052 5.658198 TGTAGTAGGGCAGAAGGTAGATA 57.342 43.478 0.00 0.00 0.00 1.98
3003 3075 3.423749 TCTGATGGTGTGTGAAATGCAT 58.576 40.909 0.00 0.00 0.00 3.96
3063 3135 3.140325 TGTAGTCTTCCAGGCCTTTTG 57.860 47.619 0.00 0.00 0.00 2.44
3064 3136 1.813178 GTAGTCTTCCAGGCCTTTTGC 59.187 52.381 0.00 0.00 40.16 3.68
3083 3155 2.819608 TGCAAGGTGTAGGAATTCAAGC 59.180 45.455 7.93 0.00 0.00 4.01
3097 3169 2.818130 TCAAGCAATTTGTTCTGGCC 57.182 45.000 0.00 0.00 38.01 5.36
3118 3190 4.082354 GCCTGGCATCTAATCCATGAATTC 60.082 45.833 15.17 0.00 0.00 2.17
3136 3208 6.987386 TGAATTCGCATTTTTAGAGGGAAAA 58.013 32.000 0.04 0.00 37.67 2.29
3167 3239 7.012421 AGTGTTGGAAAAGAGTTGAGTTATCAC 59.988 37.037 0.00 0.00 34.35 3.06
3177 3249 3.394674 TGAGTTATCACGGTTCAGCAA 57.605 42.857 0.00 0.00 0.00 3.91
3218 3418 7.665974 CCTTCTCAAAGGTGTAGGAATTAAAGT 59.334 37.037 0.00 0.00 46.10 2.66
3232 3433 8.189119 AGGAATTAAAGTAATTTGTTCTGGCA 57.811 30.769 12.28 0.00 38.42 4.92
3290 3493 2.519013 ACATGAGGGCTGGAAAAGAAC 58.481 47.619 0.00 0.00 0.00 3.01
3291 3494 1.821136 CATGAGGGCTGGAAAAGAACC 59.179 52.381 0.00 0.00 0.00 3.62
3327 3530 3.058983 TGTCTTGCAGCGACACTATTTTG 60.059 43.478 14.62 0.00 36.54 2.44
3335 3538 5.560148 CAGCGACACTATTTTGTACATTCC 58.440 41.667 0.00 0.00 0.00 3.01
3344 3547 8.875803 CACTATTTTGTACATTCCGCTTTACTA 58.124 33.333 0.00 0.00 0.00 1.82
3378 3582 7.867305 TGGTGTTCATTTTAGTAGTGTTGAA 57.133 32.000 0.00 0.00 0.00 2.69
3428 3634 5.359194 TCTTATTAAGCAGGTTGAGGAGG 57.641 43.478 0.00 0.00 0.00 4.30
3456 3662 6.183360 CCAGATAGCTTCCCTTTCAAAATCAG 60.183 42.308 0.00 0.00 0.00 2.90
3463 3669 3.253188 TCCCTTTCAAAATCAGCGACAAG 59.747 43.478 0.00 0.00 0.00 3.16
3528 3734 4.040461 TGAGAAGATCGAGGTTCTGGTTTT 59.960 41.667 14.97 0.00 33.04 2.43
3529 3735 4.974399 AGAAGATCGAGGTTCTGGTTTTT 58.026 39.130 10.47 0.00 31.63 1.94
3559 3765 0.037734 TAGTCACTGGAGACGAGCCA 59.962 55.000 0.00 0.00 43.24 4.75
3595 3801 3.772025 ACGAGGATGACAAGGAGAAAGAT 59.228 43.478 0.00 0.00 0.00 2.40
3664 3870 2.050144 ACAGTCACCATCACCAAGAGT 58.950 47.619 0.00 0.00 0.00 3.24
3694 3900 1.734477 CCTCGAGTTCACCTGCACG 60.734 63.158 12.31 0.00 0.00 5.34
3751 3957 0.612229 TGAAGCAGCCCTCTGAGAAG 59.388 55.000 6.17 0.00 42.95 2.85
3756 3962 0.035630 CAGCCCTCTGAGAAGTTGGG 60.036 60.000 6.17 0.32 42.95 4.12
3813 4019 6.296026 TCAAGTAAGAACACAAACCATAGCT 58.704 36.000 0.00 0.00 0.00 3.32
3847 4053 2.623878 TTCTTGGGTAACTGAACGCA 57.376 45.000 0.00 0.00 40.18 5.24
4028 4235 1.534729 GGGAGTACCTGTTTTGGCTG 58.465 55.000 0.00 0.00 35.85 4.85
4060 4267 5.122239 TCAAGGATTTCGTCAAGCAGTAATG 59.878 40.000 0.00 0.00 0.00 1.90
4148 4355 1.448013 CTTCGGGCTTCGGAACTCC 60.448 63.158 0.00 0.00 39.77 3.85
4169 4376 3.185797 CCAAACTGCTCCGTGTTTAGTAC 59.814 47.826 0.00 0.00 35.01 2.73
4192 4399 4.147133 CACGATGACGATGTGTATGCTTAG 59.853 45.833 0.00 0.00 42.66 2.18
4212 4419 6.494893 TTAGCATCGTGTTTTAGATTGCTT 57.505 33.333 0.00 0.00 35.04 3.91
4256 4463 4.069304 CCGGGTGATGTTAGAGTTGAAAA 58.931 43.478 0.00 0.00 0.00 2.29
4335 4543 7.028962 TGAACAAATAATTATGCTCTGTGTGC 58.971 34.615 0.00 0.00 0.00 4.57
4346 4554 2.479837 CTCTGTGTGCGTGAAGGTTTA 58.520 47.619 0.00 0.00 0.00 2.01
4348 4556 0.931702 TGTGTGCGTGAAGGTTTACG 59.068 50.000 2.87 2.87 42.79 3.18
4417 4625 4.673375 CCTGCCTGCCTGCCTGTT 62.673 66.667 0.00 0.00 0.00 3.16
4418 4626 2.352422 CTGCCTGCCTGCCTGTTA 59.648 61.111 0.00 0.00 0.00 2.41
4459 4667 8.617809 GTGTTTCACTAAATTGAGGTGAAGTAA 58.382 33.333 15.59 7.70 46.13 2.24
4482 4690 5.819825 TGTAAATAAATGTGTATGCGCCA 57.180 34.783 4.18 0.00 0.00 5.69
4484 4692 5.586643 TGTAAATAAATGTGTATGCGCCAGA 59.413 36.000 4.18 0.00 0.00 3.86
4493 4701 2.135933 GTATGCGCCAGATAGGTTGTC 58.864 52.381 4.18 0.00 40.61 3.18
4543 4906 5.833082 ACTAGTATGAACTTCCGTATGCTG 58.167 41.667 0.00 0.00 37.15 4.41
4596 4959 8.038944 TGAACTTTGGTATGTACTATGAACTCC 58.961 37.037 0.00 0.00 0.00 3.85
4634 4997 3.442625 TGTATGACGAACTTCGGTGATCT 59.557 43.478 15.42 0.00 45.59 2.75
4674 5037 1.299541 AGTTTGAATATGCCGGCTCG 58.700 50.000 29.70 0.00 0.00 5.03
4685 8340 1.067582 CCGGCTCGGTATGAAGGAC 59.932 63.158 5.56 0.00 42.73 3.85
4700 8355 2.289532 GGACCTGCTCTGGCTCAGT 61.290 63.158 2.68 0.00 39.59 3.41
4701 8356 1.079266 GACCTGCTCTGGCTCAGTG 60.079 63.158 2.68 1.99 39.59 3.66
4702 8357 1.825281 GACCTGCTCTGGCTCAGTGT 61.825 60.000 2.68 0.00 39.59 3.55
4704 8359 1.543065 CCTGCTCTGGCTCAGTGTCT 61.543 60.000 2.68 0.00 39.59 3.41
4706 8361 1.079266 GCTCTGGCTCAGTGTCTGG 60.079 63.158 2.68 0.00 35.22 3.86
4712 8367 1.595993 GGCTCAGTGTCTGGCGTCTA 61.596 60.000 0.00 0.00 31.68 2.59
4754 8472 0.030638 CTGGGCGTTGTTCTTGGTTG 59.969 55.000 0.00 0.00 0.00 3.77
4769 8487 3.343941 TGGTTGCTGGACAAGGTATAC 57.656 47.619 0.00 0.00 39.50 1.47
4825 8543 7.697352 TCATAAGTTTTCTGTGCAATTGTTG 57.303 32.000 7.40 0.00 0.00 3.33
4828 8546 2.237393 TTTCTGTGCAATTGTTGGGC 57.763 45.000 7.40 0.00 0.00 5.36
4835 8553 1.593265 CAATTGTTGGGCCTGGCTC 59.407 57.895 19.68 16.49 0.00 4.70
4911 8656 5.491070 TGTTCATCCCATTGTCTAGTTGAG 58.509 41.667 0.00 0.00 0.00 3.02
5008 8753 4.052229 ACGTTCGGCCTCGACAGG 62.052 66.667 16.31 0.00 45.92 4.00
5026 8771 2.606725 CAGGCTTCAGATCAATCACGAC 59.393 50.000 0.00 0.00 0.00 4.34
5027 8772 2.499289 AGGCTTCAGATCAATCACGACT 59.501 45.455 0.00 0.00 0.00 4.18
5028 8773 3.055530 AGGCTTCAGATCAATCACGACTT 60.056 43.478 0.00 0.00 0.00 3.01
5029 8774 3.308323 GGCTTCAGATCAATCACGACTTC 59.692 47.826 0.00 0.00 0.00 3.01
5030 8775 3.928992 GCTTCAGATCAATCACGACTTCA 59.071 43.478 0.00 0.00 0.00 3.02
5031 8776 4.201666 GCTTCAGATCAATCACGACTTCAC 60.202 45.833 0.00 0.00 0.00 3.18
5032 8777 3.501950 TCAGATCAATCACGACTTCACG 58.498 45.455 0.00 0.00 39.31 4.35
5033 8778 3.190535 TCAGATCAATCACGACTTCACGA 59.809 43.478 0.00 0.00 37.03 4.35
5034 8779 3.545475 CAGATCAATCACGACTTCACGAG 59.455 47.826 0.00 0.00 37.03 4.18
5035 8780 2.347697 TCAATCACGACTTCACGAGG 57.652 50.000 0.00 0.00 37.03 4.63
5036 8781 1.611977 TCAATCACGACTTCACGAGGT 59.388 47.619 0.00 0.00 37.03 3.85
5037 8782 1.721389 CAATCACGACTTCACGAGGTG 59.279 52.381 0.00 0.00 37.03 4.00
5038 8783 0.243907 ATCACGACTTCACGAGGTGG 59.756 55.000 0.00 0.00 33.87 4.61
5039 8784 1.105167 TCACGACTTCACGAGGTGGT 61.105 55.000 0.00 0.00 33.87 4.16
5040 8785 0.939577 CACGACTTCACGAGGTGGTG 60.940 60.000 9.41 9.41 39.72 4.17
5041 8786 1.372997 CGACTTCACGAGGTGGTGG 60.373 63.158 0.00 0.00 38.46 4.61
5042 8787 1.668151 GACTTCACGAGGTGGTGGC 60.668 63.158 0.00 0.00 38.46 5.01
5043 8788 2.738521 CTTCACGAGGTGGTGGCG 60.739 66.667 0.00 0.00 38.46 5.69
5044 8789 3.515316 CTTCACGAGGTGGTGGCGT 62.515 63.158 0.00 0.00 38.46 5.68
5045 8790 3.509137 TTCACGAGGTGGTGGCGTC 62.509 63.158 0.00 0.00 38.46 5.19
5046 8791 3.991051 CACGAGGTGGTGGCGTCT 61.991 66.667 0.00 0.00 35.90 4.18
5047 8792 3.681835 ACGAGGTGGTGGCGTCTC 61.682 66.667 0.00 0.00 31.98 3.36
5048 8793 4.436998 CGAGGTGGTGGCGTCTCC 62.437 72.222 0.00 0.00 0.00 3.71
5049 8794 3.311110 GAGGTGGTGGCGTCTCCA 61.311 66.667 6.73 6.73 44.18 3.86
5056 8801 4.798585 TGGCGTCTCCATTCCCTA 57.201 55.556 0.00 0.00 40.72 3.53
5057 8802 2.208527 TGGCGTCTCCATTCCCTAC 58.791 57.895 0.00 0.00 40.72 3.18
5058 8803 1.335132 TGGCGTCTCCATTCCCTACC 61.335 60.000 0.00 0.00 40.72 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.952030 TCATGCTATAATTGTATTATCCGGAAA 57.048 29.630 9.01 4.74 0.00 3.13
4 5 9.952030 TTCATGCTATAATTGTATTATCCGGAA 57.048 29.630 9.01 0.00 0.00 4.30
23 24 9.346005 TCATGATAATTGTCTGTTATTCATGCT 57.654 29.630 3.72 0.00 33.32 3.79
24 25 9.955208 TTCATGATAATTGTCTGTTATTCATGC 57.045 29.630 0.00 0.00 33.32 4.06
65 66 8.560903 CCTAGAGGCAATAATAAGGGGATTATT 58.439 37.037 0.00 0.00 44.51 1.40
66 67 7.129504 CCCTAGAGGCAATAATAAGGGGATTAT 59.870 40.741 0.00 0.00 38.84 1.28
67 68 6.447084 CCCTAGAGGCAATAATAAGGGGATTA 59.553 42.308 0.00 0.00 38.84 1.75
68 69 5.254032 CCCTAGAGGCAATAATAAGGGGATT 59.746 44.000 0.00 0.00 38.84 3.01
69 70 4.790790 CCCTAGAGGCAATAATAAGGGGAT 59.209 45.833 0.00 0.00 38.84 3.85
70 71 4.175962 CCCTAGAGGCAATAATAAGGGGA 58.824 47.826 0.00 0.00 38.84 4.81
71 72 4.576330 CCCTAGAGGCAATAATAAGGGG 57.424 50.000 0.00 0.00 38.84 4.79
84 85 4.437682 TGTTGGAAATATGCCCTAGAGG 57.562 45.455 0.00 0.00 39.47 3.69
85 86 4.273480 CGTTGTTGGAAATATGCCCTAGAG 59.727 45.833 0.00 0.00 0.00 2.43
86 87 4.196193 CGTTGTTGGAAATATGCCCTAGA 58.804 43.478 0.00 0.00 0.00 2.43
87 88 3.243068 GCGTTGTTGGAAATATGCCCTAG 60.243 47.826 0.00 0.00 0.00 3.02
88 89 2.685897 GCGTTGTTGGAAATATGCCCTA 59.314 45.455 0.00 0.00 0.00 3.53
89 90 1.476488 GCGTTGTTGGAAATATGCCCT 59.524 47.619 0.00 0.00 0.00 5.19
90 91 1.476488 AGCGTTGTTGGAAATATGCCC 59.524 47.619 0.00 0.00 0.00 5.36
91 92 2.529151 CAGCGTTGTTGGAAATATGCC 58.471 47.619 0.00 0.00 0.00 4.40
92 93 2.529151 CCAGCGTTGTTGGAAATATGC 58.471 47.619 0.00 0.00 35.94 3.14
93 94 2.529151 GCCAGCGTTGTTGGAAATATG 58.471 47.619 3.70 0.00 35.94 1.78
94 95 1.476488 GGCCAGCGTTGTTGGAAATAT 59.524 47.619 0.00 0.00 35.94 1.28
95 96 0.885196 GGCCAGCGTTGTTGGAAATA 59.115 50.000 0.00 0.00 35.94 1.40
96 97 1.665442 GGCCAGCGTTGTTGGAAAT 59.335 52.632 0.00 0.00 35.94 2.17
97 98 2.494530 GGGCCAGCGTTGTTGGAAA 61.495 57.895 4.39 0.00 35.94 3.13
98 99 2.909965 GGGCCAGCGTTGTTGGAA 60.910 61.111 4.39 0.00 35.94 3.53
99 100 4.966787 GGGGCCAGCGTTGTTGGA 62.967 66.667 4.39 0.00 35.94 3.53
100 101 4.974721 AGGGGCCAGCGTTGTTGG 62.975 66.667 4.39 0.00 36.98 3.77
101 102 3.673484 CAGGGGCCAGCGTTGTTG 61.673 66.667 4.39 0.00 0.00 3.33
102 103 4.974721 CCAGGGGCCAGCGTTGTT 62.975 66.667 4.39 0.00 0.00 2.83
120 121 5.830457 CCCTTTTTCATATCCTCTTCCCTTC 59.170 44.000 0.00 0.00 0.00 3.46
170 171 3.737774 GCAAATTGAGTCTCAAAGCAACC 59.262 43.478 18.93 3.11 40.12 3.77
171 172 3.737774 GGCAAATTGAGTCTCAAAGCAAC 59.262 43.478 25.99 14.47 40.12 4.17
177 178 2.290367 CACGTGGCAAATTGAGTCTCAA 59.710 45.455 17.46 17.46 41.09 3.02
205 206 1.673767 ATTGTGAGACCACCTCCCAT 58.326 50.000 0.00 0.00 42.53 4.00
222 223 2.691526 TCCACATCGTACGCCTTCTATT 59.308 45.455 11.24 0.00 0.00 1.73
229 230 3.917870 CGATCCACATCGTACGCC 58.082 61.111 11.24 0.00 45.90 5.68
259 260 2.019249 CCACTGTCCATATGGCAACTG 58.981 52.381 17.58 16.03 34.44 3.16
260 261 2.425143 CCACTGTCCATATGGCAACT 57.575 50.000 17.58 4.00 34.44 3.16
265 266 0.250038 CTCCGCCACTGTCCATATGG 60.250 60.000 16.25 16.25 36.51 2.74
267 268 0.753262 GTCTCCGCCACTGTCCATAT 59.247 55.000 0.00 0.00 0.00 1.78
268 269 0.613572 TGTCTCCGCCACTGTCCATA 60.614 55.000 0.00 0.00 0.00 2.74
269 270 1.892819 CTGTCTCCGCCACTGTCCAT 61.893 60.000 0.00 0.00 0.00 3.41
270 271 2.523168 TGTCTCCGCCACTGTCCA 60.523 61.111 0.00 0.00 0.00 4.02
271 272 2.262915 CTGTCTCCGCCACTGTCC 59.737 66.667 0.00 0.00 0.00 4.02
272 273 2.262915 CCTGTCTCCGCCACTGTC 59.737 66.667 0.00 0.00 0.00 3.51
273 274 3.314331 CCCTGTCTCCGCCACTGT 61.314 66.667 0.00 0.00 0.00 3.55
274 275 4.087892 CCCCTGTCTCCGCCACTG 62.088 72.222 0.00 0.00 0.00 3.66
280 281 3.077556 CTGGTCCCCCTGTCTCCG 61.078 72.222 0.00 0.00 0.00 4.63
281 282 3.403558 GCTGGTCCCCCTGTCTCC 61.404 72.222 0.00 0.00 32.49 3.71
282 283 2.607750 TGCTGGTCCCCCTGTCTC 60.608 66.667 0.00 0.00 32.49 3.36
283 284 2.608988 CTGCTGGTCCCCCTGTCT 60.609 66.667 0.00 0.00 32.49 3.41
284 285 3.721706 CCTGCTGGTCCCCCTGTC 61.722 72.222 0.51 0.00 32.49 3.51
312 313 4.763793 CAGCAAATAGATGATGTTAGGGGG 59.236 45.833 0.00 0.00 35.00 5.40
313 314 4.217118 GCAGCAAATAGATGATGTTAGGGG 59.783 45.833 0.00 0.00 38.90 4.79
314 315 4.823442 TGCAGCAAATAGATGATGTTAGGG 59.177 41.667 0.00 0.00 38.90 3.53
315 316 6.570672 ATGCAGCAAATAGATGATGTTAGG 57.429 37.500 0.00 0.00 38.90 2.69
318 319 9.472361 GAAAATATGCAGCAAATAGATGATGTT 57.528 29.630 0.00 0.00 38.90 2.71
319 320 8.857098 AGAAAATATGCAGCAAATAGATGATGT 58.143 29.630 0.00 0.00 38.90 3.06
320 321 9.129209 CAGAAAATATGCAGCAAATAGATGATG 57.871 33.333 0.00 0.00 39.64 3.07
321 322 9.074576 TCAGAAAATATGCAGCAAATAGATGAT 57.925 29.630 0.00 0.00 35.00 2.45
322 323 8.454570 TCAGAAAATATGCAGCAAATAGATGA 57.545 30.769 0.00 0.00 35.00 2.92
323 324 9.129209 CATCAGAAAATATGCAGCAAATAGATG 57.871 33.333 0.00 2.29 36.50 2.90
324 325 9.074576 TCATCAGAAAATATGCAGCAAATAGAT 57.925 29.630 0.00 0.00 0.00 1.98
325 326 8.454570 TCATCAGAAAATATGCAGCAAATAGA 57.545 30.769 0.00 0.00 0.00 1.98
326 327 8.965172 GTTCATCAGAAAATATGCAGCAAATAG 58.035 33.333 0.00 0.00 35.08 1.73
327 328 8.468399 TGTTCATCAGAAAATATGCAGCAAATA 58.532 29.630 0.00 0.00 35.08 1.40
328 329 7.324935 TGTTCATCAGAAAATATGCAGCAAAT 58.675 30.769 0.00 0.00 35.08 2.32
329 330 6.689554 TGTTCATCAGAAAATATGCAGCAAA 58.310 32.000 0.00 0.00 35.08 3.68
330 331 6.071784 ACTGTTCATCAGAAAATATGCAGCAA 60.072 34.615 0.00 0.00 46.27 3.91
331 332 5.416639 ACTGTTCATCAGAAAATATGCAGCA 59.583 36.000 0.00 0.00 46.27 4.41
332 333 5.742453 CACTGTTCATCAGAAAATATGCAGC 59.258 40.000 0.00 0.00 46.27 5.25
333 334 5.742453 GCACTGTTCATCAGAAAATATGCAG 59.258 40.000 0.00 0.00 46.27 4.41
334 335 5.183522 TGCACTGTTCATCAGAAAATATGCA 59.816 36.000 0.00 0.00 46.27 3.96
335 336 5.643664 TGCACTGTTCATCAGAAAATATGC 58.356 37.500 1.79 1.35 46.27 3.14
336 337 8.523523 TTTTGCACTGTTCATCAGAAAATATG 57.476 30.769 1.79 0.00 46.27 1.78
337 338 9.715121 AATTTTGCACTGTTCATCAGAAAATAT 57.285 25.926 1.79 0.00 46.27 1.28
339 340 9.199982 CTAATTTTGCACTGTTCATCAGAAAAT 57.800 29.630 1.79 0.00 46.27 1.82
340 341 8.196771 ACTAATTTTGCACTGTTCATCAGAAAA 58.803 29.630 1.79 0.00 46.27 2.29
341 342 7.648908 CACTAATTTTGCACTGTTCATCAGAAA 59.351 33.333 1.79 0.00 46.27 2.52
342 343 7.013178 TCACTAATTTTGCACTGTTCATCAGAA 59.987 33.333 1.79 0.00 46.27 3.02
343 344 6.486320 TCACTAATTTTGCACTGTTCATCAGA 59.514 34.615 1.79 0.00 46.27 3.27
345 346 6.631971 TCACTAATTTTGCACTGTTCATCA 57.368 33.333 0.00 0.00 0.00 3.07
346 347 7.307694 TCATCACTAATTTTGCACTGTTCATC 58.692 34.615 0.00 0.00 0.00 2.92
347 348 7.218228 TCATCACTAATTTTGCACTGTTCAT 57.782 32.000 0.00 0.00 0.00 2.57
348 349 6.631971 TCATCACTAATTTTGCACTGTTCA 57.368 33.333 0.00 0.00 0.00 3.18
349 350 8.430063 CAAATCATCACTAATTTTGCACTGTTC 58.570 33.333 0.00 0.00 0.00 3.18
350 351 7.095523 GCAAATCATCACTAATTTTGCACTGTT 60.096 33.333 12.34 0.00 46.96 3.16
351 352 6.366877 GCAAATCATCACTAATTTTGCACTGT 59.633 34.615 12.34 0.00 46.96 3.55
352 353 6.758149 GCAAATCATCACTAATTTTGCACTG 58.242 36.000 12.34 0.00 46.96 3.66
353 354 6.956299 GCAAATCATCACTAATTTTGCACT 57.044 33.333 12.34 0.00 46.96 4.40
357 358 8.692110 TTAGCAGCAAATCATCACTAATTTTG 57.308 30.769 0.00 0.00 0.00 2.44
358 359 9.880157 ATTTAGCAGCAAATCATCACTAATTTT 57.120 25.926 0.00 0.00 0.00 1.82
359 360 9.880157 AATTTAGCAGCAAATCATCACTAATTT 57.120 25.926 0.00 0.00 0.00 1.82
363 364 9.955208 CATTAATTTAGCAGCAAATCATCACTA 57.045 29.630 0.00 0.00 0.00 2.74
364 365 7.437267 GCATTAATTTAGCAGCAAATCATCACT 59.563 33.333 0.00 0.00 0.00 3.41
365 366 7.437267 AGCATTAATTTAGCAGCAAATCATCAC 59.563 33.333 0.00 0.00 0.00 3.06
366 367 7.494211 AGCATTAATTTAGCAGCAAATCATCA 58.506 30.769 0.00 0.00 0.00 3.07
367 368 7.941795 AGCATTAATTTAGCAGCAAATCATC 57.058 32.000 0.00 0.00 0.00 2.92
368 369 8.609176 CAAAGCATTAATTTAGCAGCAAATCAT 58.391 29.630 0.00 0.00 0.00 2.45
369 370 7.064847 CCAAAGCATTAATTTAGCAGCAAATCA 59.935 33.333 0.00 0.00 0.00 2.57
370 371 7.404203 CCAAAGCATTAATTTAGCAGCAAATC 58.596 34.615 0.00 0.00 0.00 2.17
371 372 6.183360 GCCAAAGCATTAATTTAGCAGCAAAT 60.183 34.615 0.00 0.00 39.53 2.32
372 373 5.122082 GCCAAAGCATTAATTTAGCAGCAAA 59.878 36.000 0.00 0.00 39.53 3.68
373 374 4.630940 GCCAAAGCATTAATTTAGCAGCAA 59.369 37.500 0.00 0.00 39.53 3.91
374 375 4.183101 GCCAAAGCATTAATTTAGCAGCA 58.817 39.130 0.00 0.00 39.53 4.41
375 376 3.557185 GGCCAAAGCATTAATTTAGCAGC 59.443 43.478 0.00 0.00 42.56 5.25
376 377 4.122046 GGGCCAAAGCATTAATTTAGCAG 58.878 43.478 4.39 0.00 42.56 4.24
377 378 3.774216 AGGGCCAAAGCATTAATTTAGCA 59.226 39.130 6.18 0.00 42.56 3.49
378 379 4.371786 GAGGGCCAAAGCATTAATTTAGC 58.628 43.478 6.18 0.00 42.56 3.09
379 380 4.651045 AGGAGGGCCAAAGCATTAATTTAG 59.349 41.667 6.18 0.00 42.56 1.85
380 381 4.619679 AGGAGGGCCAAAGCATTAATTTA 58.380 39.130 6.18 0.00 42.56 1.40
381 382 3.452264 GAGGAGGGCCAAAGCATTAATTT 59.548 43.478 6.18 0.00 42.56 1.82
382 383 3.033909 GAGGAGGGCCAAAGCATTAATT 58.966 45.455 6.18 0.00 42.56 1.40
383 384 2.024080 TGAGGAGGGCCAAAGCATTAAT 60.024 45.455 6.18 0.00 42.56 1.40
384 385 1.357420 TGAGGAGGGCCAAAGCATTAA 59.643 47.619 6.18 0.00 42.56 1.40
385 386 0.998928 TGAGGAGGGCCAAAGCATTA 59.001 50.000 6.18 0.00 42.56 1.90
386 387 0.114954 TTGAGGAGGGCCAAAGCATT 59.885 50.000 6.18 0.00 42.56 3.56
387 388 0.337428 ATTGAGGAGGGCCAAAGCAT 59.663 50.000 6.18 0.00 42.56 3.79
388 389 0.114954 AATTGAGGAGGGCCAAAGCA 59.885 50.000 6.18 0.00 42.56 3.91
389 390 2.027385 CTAATTGAGGAGGGCCAAAGC 58.973 52.381 6.18 0.00 36.29 3.51
390 391 3.372440 ACTAATTGAGGAGGGCCAAAG 57.628 47.619 6.18 0.00 36.29 2.77
391 392 3.825908 AACTAATTGAGGAGGGCCAAA 57.174 42.857 6.18 0.00 36.29 3.28
392 393 3.825908 AAACTAATTGAGGAGGGCCAA 57.174 42.857 6.18 0.00 36.29 4.52
393 394 4.538490 TCTTAAACTAATTGAGGAGGGCCA 59.462 41.667 6.18 0.00 36.29 5.36
394 395 5.112129 TCTTAAACTAATTGAGGAGGGCC 57.888 43.478 0.00 0.00 0.00 5.80
395 396 6.261158 GTGATCTTAAACTAATTGAGGAGGGC 59.739 42.308 0.00 0.00 0.00 5.19
396 397 7.569240 AGTGATCTTAAACTAATTGAGGAGGG 58.431 38.462 0.00 0.00 0.00 4.30
397 398 8.887717 CAAGTGATCTTAAACTAATTGAGGAGG 58.112 37.037 0.00 0.00 32.07 4.30
398 399 8.887717 CCAAGTGATCTTAAACTAATTGAGGAG 58.112 37.037 0.00 0.00 32.07 3.69
399 400 7.336931 GCCAAGTGATCTTAAACTAATTGAGGA 59.663 37.037 0.00 0.00 32.07 3.71
400 401 7.415653 GGCCAAGTGATCTTAAACTAATTGAGG 60.416 40.741 0.00 0.00 32.07 3.86
401 402 7.415653 GGGCCAAGTGATCTTAAACTAATTGAG 60.416 40.741 4.39 0.00 32.07 3.02
402 403 6.377146 GGGCCAAGTGATCTTAAACTAATTGA 59.623 38.462 4.39 0.00 32.07 2.57
403 404 6.405842 GGGGCCAAGTGATCTTAAACTAATTG 60.406 42.308 4.39 0.00 32.07 2.32
404 405 5.656859 GGGGCCAAGTGATCTTAAACTAATT 59.343 40.000 4.39 0.00 32.07 1.40
405 406 5.201243 GGGGCCAAGTGATCTTAAACTAAT 58.799 41.667 4.39 0.00 32.07 1.73
406 407 4.569015 GGGGGCCAAGTGATCTTAAACTAA 60.569 45.833 4.39 0.00 32.07 2.24
407 408 3.053917 GGGGGCCAAGTGATCTTAAACTA 60.054 47.826 4.39 0.00 32.07 2.24
408 409 2.291605 GGGGGCCAAGTGATCTTAAACT 60.292 50.000 4.39 0.00 32.07 2.66
409 410 2.100197 GGGGGCCAAGTGATCTTAAAC 58.900 52.381 4.39 0.00 32.07 2.01
410 411 2.525105 GGGGGCCAAGTGATCTTAAA 57.475 50.000 4.39 0.00 32.07 1.52
448 449 0.035881 ATCCATATGCAGTGGCGGAG 59.964 55.000 14.47 0.00 45.35 4.63
449 450 0.250424 CATCCATATGCAGTGGCGGA 60.250 55.000 14.47 5.92 45.35 5.54
450 451 2.250646 CATCCATATGCAGTGGCGG 58.749 57.895 14.47 6.64 45.35 6.13
557 558 2.777913 TCTCAGAGGACCTAGCCTAGA 58.222 52.381 0.00 0.00 38.73 2.43
560 561 1.757405 GCATCTCAGAGGACCTAGCCT 60.757 57.143 0.00 0.00 42.17 4.58
561 562 0.678950 GCATCTCAGAGGACCTAGCC 59.321 60.000 0.00 0.00 0.00 3.93
568 569 1.758514 GACCCCGCATCTCAGAGGA 60.759 63.158 0.00 0.00 0.00 3.71
571 572 0.250234 CAAAGACCCCGCATCTCAGA 59.750 55.000 0.00 0.00 0.00 3.27
580 581 2.903547 CGGTTGCACAAAGACCCCG 61.904 63.158 0.00 0.00 0.00 5.73
598 599 4.102649 CAAAGTGTTTTCAAGACCGGTTC 58.897 43.478 9.42 1.59 0.00 3.62
599 600 3.759618 TCAAAGTGTTTTCAAGACCGGTT 59.240 39.130 9.42 0.00 0.00 4.44
614 619 1.125021 CGCAGCTCGTAACTCAAAGTG 59.875 52.381 0.00 0.00 0.00 3.16
634 639 6.204495 TCAAAGTCCATAATTTTTGCCTTTGC 59.796 34.615 16.40 0.00 38.13 3.68
639 644 9.598517 TCATTATCAAAGTCCATAATTTTTGCC 57.401 29.630 0.00 0.00 32.14 4.52
648 654 7.281841 TGCACTGATCATTATCAAAGTCCATA 58.718 34.615 0.00 0.00 41.57 2.74
666 673 2.030007 GGCTTTTTAGCACATGCACTGA 60.030 45.455 6.64 0.00 45.16 3.41
667 674 2.288334 TGGCTTTTTAGCACATGCACTG 60.288 45.455 6.64 0.00 45.16 3.66
691 698 6.961576 ACGTTAAGTGAGAGCTACAGATATC 58.038 40.000 0.00 0.00 0.00 1.63
815 824 8.377799 AGCTTCATAAAGGTGGAATTTGAAATT 58.622 29.630 2.27 2.27 41.55 1.82
816 825 7.910584 AGCTTCATAAAGGTGGAATTTGAAAT 58.089 30.769 0.00 0.00 41.55 2.17
823 834 4.487714 TCGAGCTTCATAAAGGTGGAAT 57.512 40.909 0.00 0.00 42.39 3.01
832 843 5.535753 TCAATGGAGATCGAGCTTCATAA 57.464 39.130 24.18 13.10 32.92 1.90
845 856 6.209986 ACAATCTCAAAAATGCTCAATGGAGA 59.790 34.615 0.00 0.00 44.26 3.71
853 864 5.776744 ACCTTCACAATCTCAAAAATGCTC 58.223 37.500 0.00 0.00 0.00 4.26
862 873 4.136796 CTGTCCAAACCTTCACAATCTCA 58.863 43.478 0.00 0.00 0.00 3.27
921 936 1.993391 GGGAATGGAGGTGGGACGA 60.993 63.158 0.00 0.00 0.00 4.20
1296 1320 4.371786 CCAGCGACAGATCTAAATTAGCA 58.628 43.478 0.00 0.00 0.00 3.49
1297 1321 3.185391 GCCAGCGACAGATCTAAATTAGC 59.815 47.826 0.00 0.00 0.00 3.09
1298 1322 4.626042 AGCCAGCGACAGATCTAAATTAG 58.374 43.478 0.00 0.00 0.00 1.73
1343 1367 3.997021 GGAACATCAGACCACAACTACAG 59.003 47.826 0.00 0.00 0.00 2.74
1348 1372 1.156736 CGGGAACATCAGACCACAAC 58.843 55.000 0.00 0.00 0.00 3.32
1349 1373 0.036164 CCGGGAACATCAGACCACAA 59.964 55.000 0.00 0.00 0.00 3.33
1350 1374 0.834261 TCCGGGAACATCAGACCACA 60.834 55.000 0.00 0.00 0.00 4.17
1373 1399 4.537015 GCGCACAGATTACCCAATTAATC 58.463 43.478 0.30 0.00 38.33 1.75
1861 1887 2.279741 GCGCATGACCAGACTAATTGA 58.720 47.619 0.30 0.00 0.00 2.57
1862 1888 2.009051 TGCGCATGACCAGACTAATTG 58.991 47.619 5.66 0.00 0.00 2.32
1863 1889 2.401583 TGCGCATGACCAGACTAATT 57.598 45.000 5.66 0.00 0.00 1.40
1864 1890 2.627515 ATGCGCATGACCAGACTAAT 57.372 45.000 24.69 0.00 0.00 1.73
1868 1894 2.160822 AGATATGCGCATGACCAGAC 57.839 50.000 32.48 14.38 0.00 3.51
1874 1900 1.516161 GCAGGAAGATATGCGCATGA 58.484 50.000 32.48 16.53 31.87 3.07
1880 1906 1.964552 ACTGCAGCAGGAAGATATGC 58.035 50.000 26.38 0.00 42.87 3.14
1993 2024 5.551233 TGAGAAGAAGTTAACATGGACAGG 58.449 41.667 8.61 0.00 0.00 4.00
2070 2106 3.244814 GCAAGAAGTGACTCATCGCTATG 59.755 47.826 0.00 0.00 45.19 2.23
2075 2111 4.867047 ACTTATGCAAGAAGTGACTCATCG 59.133 41.667 14.69 0.00 35.80 3.84
2099 2135 9.582431 CATGCAAGATTACATCAAAAAGAGAAT 57.418 29.630 0.00 0.00 0.00 2.40
2101 2137 8.339344 TCATGCAAGATTACATCAAAAAGAGA 57.661 30.769 0.00 0.00 0.00 3.10
2103 2139 8.339344 TCTCATGCAAGATTACATCAAAAAGA 57.661 30.769 0.00 0.00 0.00 2.52
2106 2142 9.932207 AAAATCTCATGCAAGATTACATCAAAA 57.068 25.926 12.85 0.00 43.53 2.44
2107 2143 9.361315 CAAAATCTCATGCAAGATTACATCAAA 57.639 29.630 12.85 0.00 43.53 2.69
2108 2144 7.490079 GCAAAATCTCATGCAAGATTACATCAA 59.510 33.333 12.85 0.00 43.53 2.57
2109 2145 6.976349 GCAAAATCTCATGCAAGATTACATCA 59.024 34.615 12.85 0.00 43.53 3.07
2110 2146 7.201145 AGCAAAATCTCATGCAAGATTACATC 58.799 34.615 12.85 4.93 43.53 3.06
2111 2147 7.108841 AGCAAAATCTCATGCAAGATTACAT 57.891 32.000 12.85 2.35 43.53 2.29
2112 2148 6.519679 AGCAAAATCTCATGCAAGATTACA 57.480 33.333 12.85 0.00 43.53 2.41
2113 2149 6.810182 ACAAGCAAAATCTCATGCAAGATTAC 59.190 34.615 12.85 7.15 43.53 1.89
2114 2150 6.809689 CACAAGCAAAATCTCATGCAAGATTA 59.190 34.615 12.85 0.00 43.53 1.75
2115 2151 5.637810 CACAAGCAAAATCTCATGCAAGATT 59.362 36.000 7.67 7.67 45.67 2.40
2116 2152 5.168569 CACAAGCAAAATCTCATGCAAGAT 58.831 37.500 0.00 0.00 44.95 2.40
2125 2161 5.105063 GGATTAAGGCACAAGCAAAATCTC 58.895 41.667 0.00 0.00 44.61 2.75
2128 2164 4.888326 TGGATTAAGGCACAAGCAAAAT 57.112 36.364 0.00 0.00 44.61 1.82
2129 2165 4.282957 TCATGGATTAAGGCACAAGCAAAA 59.717 37.500 0.00 0.00 44.61 2.44
2135 2171 8.995027 AATATTACTCATGGATTAAGGCACAA 57.005 30.769 0.00 0.00 0.00 3.33
2144 2181 7.445402 CCAAAGACGGAATATTACTCATGGATT 59.555 37.037 12.01 0.00 0.00 3.01
2145 2182 6.936900 CCAAAGACGGAATATTACTCATGGAT 59.063 38.462 12.01 0.00 0.00 3.41
2146 2183 6.099125 TCCAAAGACGGAATATTACTCATGGA 59.901 38.462 14.09 14.09 29.93 3.41
2173 2210 3.149196 ACTGTAGTAAGACGGAACCGAA 58.851 45.455 20.14 0.00 42.83 4.30
2181 2218 4.795795 CAGCATCAAGACTGTAGTAAGACG 59.204 45.833 0.00 0.00 0.00 4.18
2182 2219 5.715070 ACAGCATCAAGACTGTAGTAAGAC 58.285 41.667 0.00 0.00 45.09 3.01
2204 2241 2.236395 ACCACCAACAGAGCCATACTAC 59.764 50.000 0.00 0.00 0.00 2.73
2220 2257 1.071228 AGTAACGAAACCTCCACCACC 59.929 52.381 0.00 0.00 0.00 4.61
2253 2290 8.200792 ACAAATTGCACTGAAATACAACCTAAA 58.799 29.630 0.00 0.00 0.00 1.85
2320 2357 6.262944 TGCAAGATGTAAGTGACAAGAAACAT 59.737 34.615 0.00 0.00 42.78 2.71
2325 2364 4.154737 GCATGCAAGATGTAAGTGACAAGA 59.845 41.667 14.21 0.00 42.78 3.02
2326 2365 4.155462 AGCATGCAAGATGTAAGTGACAAG 59.845 41.667 21.98 0.00 42.78 3.16
2327 2366 4.074259 AGCATGCAAGATGTAAGTGACAA 58.926 39.130 21.98 0.00 42.78 3.18
2328 2367 3.678289 AGCATGCAAGATGTAAGTGACA 58.322 40.909 21.98 0.00 43.97 3.58
2329 2368 4.409570 CAAGCATGCAAGATGTAAGTGAC 58.590 43.478 21.98 0.00 0.00 3.67
2399 2438 4.574599 AAAGACAGAGAACCATGCAAAC 57.425 40.909 0.00 0.00 0.00 2.93
2427 2467 3.136123 CAGTGCCCCTTGCCATCG 61.136 66.667 0.00 0.00 40.16 3.84
2452 2513 2.637382 TGAGAGTGGTGCAGTTAATGGA 59.363 45.455 0.00 0.00 0.00 3.41
2453 2514 3.057969 TGAGAGTGGTGCAGTTAATGG 57.942 47.619 0.00 0.00 0.00 3.16
2454 2515 3.181503 GCATGAGAGTGGTGCAGTTAATG 60.182 47.826 0.00 0.00 38.68 1.90
2455 2516 3.012518 GCATGAGAGTGGTGCAGTTAAT 58.987 45.455 0.00 0.00 38.68 1.40
2456 2517 2.224499 TGCATGAGAGTGGTGCAGTTAA 60.224 45.455 0.00 0.00 43.30 2.01
2457 2518 1.347378 TGCATGAGAGTGGTGCAGTTA 59.653 47.619 0.00 0.00 43.30 2.24
2458 2519 0.109153 TGCATGAGAGTGGTGCAGTT 59.891 50.000 0.00 0.00 43.30 3.16
2459 2520 1.756665 TGCATGAGAGTGGTGCAGT 59.243 52.632 0.00 0.00 43.30 4.40
2460 2521 4.707791 TGCATGAGAGTGGTGCAG 57.292 55.556 0.00 0.00 43.30 4.41
2461 2522 0.604511 CAGTGCATGAGAGTGGTGCA 60.605 55.000 0.00 0.00 45.69 4.57
2462 2523 0.321034 TCAGTGCATGAGAGTGGTGC 60.321 55.000 0.00 0.00 39.26 5.01
2463 2524 3.921257 TCAGTGCATGAGAGTGGTG 57.079 52.632 0.00 0.00 32.77 4.17
2471 2532 5.335113 GCATAAAACTCAACTCAGTGCATGA 60.335 40.000 0.00 0.00 36.21 3.07
2472 2533 4.855388 GCATAAAACTCAACTCAGTGCATG 59.145 41.667 0.00 0.00 0.00 4.06
2599 2661 7.220030 AGACTCAACATTCATCAACAGTAAGT 58.780 34.615 0.00 0.00 0.00 2.24
2600 2662 7.664082 AGACTCAACATTCATCAACAGTAAG 57.336 36.000 0.00 0.00 0.00 2.34
2602 2664 7.819415 CCTTAGACTCAACATTCATCAACAGTA 59.181 37.037 0.00 0.00 0.00 2.74
2603 2665 6.652481 CCTTAGACTCAACATTCATCAACAGT 59.348 38.462 0.00 0.00 0.00 3.55
2604 2666 6.652481 ACCTTAGACTCAACATTCATCAACAG 59.348 38.462 0.00 0.00 0.00 3.16
2605 2667 6.533730 ACCTTAGACTCAACATTCATCAACA 58.466 36.000 0.00 0.00 0.00 3.33
2606 2668 7.361286 GGAACCTTAGACTCAACATTCATCAAC 60.361 40.741 0.00 0.00 0.00 3.18
2610 2672 6.126863 TGGAACCTTAGACTCAACATTCAT 57.873 37.500 0.00 0.00 0.00 2.57
2669 2731 0.756903 TCCAGCCGGCTAGAAATACC 59.243 55.000 32.30 0.00 0.00 2.73
2690 2753 4.759782 ACTATCTGTTCGGGTTCAATCTG 58.240 43.478 0.00 0.00 0.00 2.90
2709 2773 3.118531 AGGAACGGAGGGAGTACTACTA 58.881 50.000 4.77 0.00 0.00 1.82
2715 2779 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2716 2780 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2717 2781 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2718 2782 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2719 2783 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2720 2784 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2746 2810 8.512956 GCGTATGTAGTCCTTAATGAATCTCTA 58.487 37.037 0.00 0.00 0.00 2.43
2747 2811 7.014326 TGCGTATGTAGTCCTTAATGAATCTCT 59.986 37.037 0.00 0.00 0.00 3.10
2748 2812 7.145985 TGCGTATGTAGTCCTTAATGAATCTC 58.854 38.462 0.00 0.00 0.00 2.75
2749 2813 7.050970 TGCGTATGTAGTCCTTAATGAATCT 57.949 36.000 0.00 0.00 0.00 2.40
2750 2814 6.128795 GCTGCGTATGTAGTCCTTAATGAATC 60.129 42.308 1.82 0.00 0.00 2.52
2751 2815 5.696724 GCTGCGTATGTAGTCCTTAATGAAT 59.303 40.000 1.82 0.00 0.00 2.57
2752 2816 5.047847 GCTGCGTATGTAGTCCTTAATGAA 58.952 41.667 1.82 0.00 0.00 2.57
2753 2817 4.098807 TGCTGCGTATGTAGTCCTTAATGA 59.901 41.667 1.82 0.00 0.00 2.57
2754 2818 4.368315 TGCTGCGTATGTAGTCCTTAATG 58.632 43.478 1.82 0.00 0.00 1.90
2755 2819 4.665833 TGCTGCGTATGTAGTCCTTAAT 57.334 40.909 1.82 0.00 0.00 1.40
2756 2820 4.459390 TTGCTGCGTATGTAGTCCTTAA 57.541 40.909 1.82 0.00 0.00 1.85
2757 2821 4.459390 TTTGCTGCGTATGTAGTCCTTA 57.541 40.909 1.82 0.00 0.00 2.69
2758 2822 3.328382 TTTGCTGCGTATGTAGTCCTT 57.672 42.857 1.82 0.00 0.00 3.36
2759 2823 3.328382 TTTTGCTGCGTATGTAGTCCT 57.672 42.857 1.82 0.00 0.00 3.85
2760 2824 3.621268 TCATTTTGCTGCGTATGTAGTCC 59.379 43.478 1.82 0.00 0.00 3.85
2761 2825 4.330074 ACTCATTTTGCTGCGTATGTAGTC 59.670 41.667 1.82 0.00 0.00 2.59
2762 2826 4.093408 CACTCATTTTGCTGCGTATGTAGT 59.907 41.667 1.82 2.53 0.00 2.73
2763 2827 4.329801 TCACTCATTTTGCTGCGTATGTAG 59.670 41.667 0.00 0.00 0.00 2.74
2764 2828 4.249661 TCACTCATTTTGCTGCGTATGTA 58.750 39.130 0.00 0.00 0.00 2.29
2765 2829 3.073678 TCACTCATTTTGCTGCGTATGT 58.926 40.909 0.00 0.00 0.00 2.29
2766 2830 3.745332 TCACTCATTTTGCTGCGTATG 57.255 42.857 0.00 0.00 0.00 2.39
2767 2831 4.637534 AGATTCACTCATTTTGCTGCGTAT 59.362 37.500 0.00 0.00 0.00 3.06
2768 2832 4.002982 AGATTCACTCATTTTGCTGCGTA 58.997 39.130 0.00 0.00 0.00 4.42
2769 2833 2.816087 AGATTCACTCATTTTGCTGCGT 59.184 40.909 0.00 0.00 0.00 5.24
2770 2834 3.482722 AGATTCACTCATTTTGCTGCG 57.517 42.857 0.00 0.00 0.00 5.18
2771 2835 5.091431 GTGTAGATTCACTCATTTTGCTGC 58.909 41.667 0.00 0.00 35.68 5.25
2772 2836 6.492007 AGTGTAGATTCACTCATTTTGCTG 57.508 37.500 0.00 0.00 44.07 4.41
2803 2867 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
2804 2868 8.323567 TGGACTACATACGGATGTATATAGACA 58.676 37.037 20.64 12.12 45.42 3.41
2805 2869 8.728337 TGGACTACATACGGATGTATATAGAC 57.272 38.462 20.64 10.95 45.42 2.59
2810 2874 9.689501 TCAATATGGACTACATACGGATGTATA 57.310 33.333 20.64 11.30 45.42 1.47
2811 2875 8.589701 TCAATATGGACTACATACGGATGTAT 57.410 34.615 20.64 9.39 45.42 2.29
2812 2876 8.411991 TTCAATATGGACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
2814 2878 8.777865 ATTTCAATATGGACTACATACGGATG 57.222 34.615 5.94 5.94 44.41 3.51
2815 2879 8.816894 AGATTTCAATATGGACTACATACGGAT 58.183 33.333 0.00 0.00 44.41 4.18
2816 2880 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
2817 2881 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
2825 2889 8.907885 GCCTTTTTAGAGATTTCAATATGGACT 58.092 33.333 0.00 0.00 0.00 3.85
2826 2890 8.907885 AGCCTTTTTAGAGATTTCAATATGGAC 58.092 33.333 0.00 0.00 0.00 4.02
2827 2891 9.479549 AAGCCTTTTTAGAGATTTCAATATGGA 57.520 29.630 0.00 0.00 0.00 3.41
2845 2909 9.201989 CCCTCCTTTTCTAAATATAAGCCTTTT 57.798 33.333 0.00 0.00 0.00 2.27
2846 2910 8.566109 TCCCTCCTTTTCTAAATATAAGCCTTT 58.434 33.333 0.00 0.00 0.00 3.11
2847 2911 7.999545 GTCCCTCCTTTTCTAAATATAAGCCTT 59.000 37.037 0.00 0.00 0.00 4.35
2848 2912 7.351187 AGTCCCTCCTTTTCTAAATATAAGCCT 59.649 37.037 0.00 0.00 0.00 4.58
2849 2913 7.519057 AGTCCCTCCTTTTCTAAATATAAGCC 58.481 38.462 0.00 0.00 0.00 4.35
2850 2914 9.713713 CTAGTCCCTCCTTTTCTAAATATAAGC 57.286 37.037 0.00 0.00 0.00 3.09
2854 2918 7.993758 GCAACTAGTCCCTCCTTTTCTAAATAT 59.006 37.037 0.00 0.00 0.00 1.28
2855 2919 7.182206 AGCAACTAGTCCCTCCTTTTCTAAATA 59.818 37.037 0.00 0.00 0.00 1.40
2856 2920 6.012421 AGCAACTAGTCCCTCCTTTTCTAAAT 60.012 38.462 0.00 0.00 0.00 1.40
2857 2921 5.309806 AGCAACTAGTCCCTCCTTTTCTAAA 59.690 40.000 0.00 0.00 0.00 1.85
2858 2922 4.844655 AGCAACTAGTCCCTCCTTTTCTAA 59.155 41.667 0.00 0.00 0.00 2.10
2859 2923 4.426704 AGCAACTAGTCCCTCCTTTTCTA 58.573 43.478 0.00 0.00 0.00 2.10
2860 2924 3.252351 AGCAACTAGTCCCTCCTTTTCT 58.748 45.455 0.00 0.00 0.00 2.52
2861 2925 3.704800 AGCAACTAGTCCCTCCTTTTC 57.295 47.619 0.00 0.00 0.00 2.29
2862 2926 4.349930 TGTTAGCAACTAGTCCCTCCTTTT 59.650 41.667 0.00 0.00 0.00 2.27
2863 2927 3.908103 TGTTAGCAACTAGTCCCTCCTTT 59.092 43.478 0.00 0.00 0.00 3.11
2864 2928 3.517612 TGTTAGCAACTAGTCCCTCCTT 58.482 45.455 0.00 0.00 0.00 3.36
2865 2929 3.185880 TGTTAGCAACTAGTCCCTCCT 57.814 47.619 0.00 0.00 0.00 3.69
2866 2930 4.202233 GGTATGTTAGCAACTAGTCCCTCC 60.202 50.000 0.00 0.00 0.00 4.30
2867 2931 4.404715 TGGTATGTTAGCAACTAGTCCCTC 59.595 45.833 0.00 0.00 32.53 4.30
2868 2932 4.359105 TGGTATGTTAGCAACTAGTCCCT 58.641 43.478 0.00 0.00 32.53 4.20
2869 2933 4.748277 TGGTATGTTAGCAACTAGTCCC 57.252 45.455 0.00 0.00 32.53 4.46
2950 3014 2.084546 CTGCCCTACTACAACCAAAGC 58.915 52.381 0.00 0.00 0.00 3.51
2957 3021 4.326600 TCTACCTTCTGCCCTACTACAA 57.673 45.455 0.00 0.00 0.00 2.41
2967 3031 5.931146 CACCATCAGAATATCTACCTTCTGC 59.069 44.000 7.29 0.00 45.12 4.26
2980 3052 3.827876 TGCATTTCACACACCATCAGAAT 59.172 39.130 0.00 0.00 0.00 2.40
2990 3062 4.511527 ACAAAACCAATGCATTTCACACA 58.488 34.783 9.83 0.00 0.00 3.72
3003 3075 5.865085 ACTCTATGTAGCAGACAAAACCAA 58.135 37.500 0.00 0.00 42.78 3.67
3039 3111 4.388577 AAGGCCTGGAAGACTACATTTT 57.611 40.909 5.69 0.00 34.07 1.82
3040 3112 4.388577 AAAGGCCTGGAAGACTACATTT 57.611 40.909 5.69 0.00 34.07 2.32
3044 3116 1.813178 GCAAAAGGCCTGGAAGACTAC 59.187 52.381 5.69 0.00 34.07 2.73
3047 3119 1.000171 CTTGCAAAAGGCCTGGAAGAC 60.000 52.381 16.78 1.89 42.89 3.01
3063 3135 2.819608 TGCTTGAATTCCTACACCTTGC 59.180 45.455 2.27 0.00 0.00 4.01
3064 3136 5.649782 ATTGCTTGAATTCCTACACCTTG 57.350 39.130 2.27 0.00 0.00 3.61
3070 3142 6.587608 CCAGAACAAATTGCTTGAATTCCTAC 59.412 38.462 2.27 0.00 38.50 3.18
3083 3155 0.680618 TGCCAGGCCAGAACAAATTG 59.319 50.000 9.64 0.00 0.00 2.32
3097 3169 4.379186 GCGAATTCATGGATTAGATGCCAG 60.379 45.833 10.76 0.00 37.64 4.85
3118 3190 5.708948 TCATGTTTTCCCTCTAAAAATGCG 58.291 37.500 0.00 0.00 30.53 4.73
3136 3208 5.192927 TCAACTCTTTTCCAACACTCATGT 58.807 37.500 0.00 0.00 42.46 3.21
3167 3239 4.944962 TGAAGATTACATTGCTGAACCG 57.055 40.909 0.00 0.00 0.00 4.44
3177 3249 5.441718 TGAGAAGGCCTTGAAGATTACAT 57.558 39.130 26.25 0.00 0.00 2.29
3218 3418 7.946381 TTACATACCATGCCAGAACAAATTA 57.054 32.000 0.00 0.00 0.00 1.40
3261 3464 2.026449 CCAGCCCTCATGTTTTCTCTCT 60.026 50.000 0.00 0.00 0.00 3.10
3290 3493 3.621715 GCAAGACAAATAGGGTAACTCGG 59.378 47.826 0.00 0.00 0.00 4.63
3291 3494 4.250464 TGCAAGACAAATAGGGTAACTCG 58.750 43.478 0.00 0.00 0.00 4.18
3327 3530 5.047847 TGCTCATAGTAAAGCGGAATGTAC 58.952 41.667 4.10 0.00 41.51 2.90
3335 3538 3.684788 ACCAACTTGCTCATAGTAAAGCG 59.315 43.478 4.10 0.00 41.51 4.68
3344 3547 4.942761 AAATGAACACCAACTTGCTCAT 57.057 36.364 0.00 0.00 34.45 2.90
3378 3582 3.118531 AGGTGAGGCTCTGAATACCAAT 58.881 45.455 19.55 1.34 0.00 3.16
3428 3634 2.505819 TGAAAGGGAAGCTATCTGGGAC 59.494 50.000 0.00 0.00 0.00 4.46
3456 3662 1.401905 CATTAAGCCCCTTCTTGTCGC 59.598 52.381 0.00 0.00 0.00 5.19
3463 3669 3.879892 GAGTGATGTCATTAAGCCCCTTC 59.120 47.826 0.00 0.00 0.00 3.46
3528 3734 2.238646 CCAGTGACTAGGTTGGGCATAA 59.761 50.000 0.00 0.00 0.00 1.90
3529 3735 1.837439 CCAGTGACTAGGTTGGGCATA 59.163 52.381 0.00 0.00 0.00 3.14
3559 3765 1.326213 CCTCGTCCTGGTCATGCTCT 61.326 60.000 0.00 0.00 0.00 4.09
3595 3801 0.032540 CGCCGTCATCCTGATCATCA 59.967 55.000 0.00 0.00 0.00 3.07
3628 3834 2.190488 CTGTGAGGGGAAGGCTGGAC 62.190 65.000 0.00 0.00 0.00 4.02
3694 3900 0.892063 GGATCTCGTCAGGATAGGCC 59.108 60.000 0.00 0.00 0.00 5.19
3751 3957 2.027192 TGCAATGTAGTCCTCTCCCAAC 60.027 50.000 0.00 0.00 0.00 3.77
3756 3962 4.541779 CTCGTATGCAATGTAGTCCTCTC 58.458 47.826 0.00 0.00 0.00 3.20
3813 4019 5.946486 ACCCAAGAAATTAAAATGGCCAAA 58.054 33.333 10.96 0.00 0.00 3.28
3847 4053 2.598632 GCAAGCAGCGACGACAACT 61.599 57.895 0.00 0.00 0.00 3.16
3848 4054 2.127609 GCAAGCAGCGACGACAAC 60.128 61.111 0.00 0.00 0.00 3.32
4028 4235 3.498397 TGACGAAATCCTTGAGCTTGTTC 59.502 43.478 0.00 0.00 0.00 3.18
4060 4267 6.529220 AGGGATCATAACTTGCAATCTCTAC 58.471 40.000 0.00 0.00 0.00 2.59
4148 4355 3.805422 TGTACTAAACACGGAGCAGTTTG 59.195 43.478 0.00 0.00 38.96 2.93
4169 4376 2.463876 AGCATACACATCGTCATCGTG 58.536 47.619 0.00 0.00 38.33 4.35
4171 4378 3.120286 GCTAAGCATACACATCGTCATCG 59.880 47.826 0.00 0.00 38.55 3.84
4192 4399 6.452244 AAAAAGCAATCTAAAACACGATGC 57.548 33.333 0.00 0.00 0.00 3.91
4231 4438 1.933021 ACTCTAACATCACCCGGTCA 58.067 50.000 0.00 0.00 0.00 4.02
4256 4463 5.208294 TCTATCTGAAGAACTACCCAGGT 57.792 43.478 0.00 0.00 0.00 4.00
4266 4473 8.358148 ACTTAACGAAGTGTTCTATCTGAAGAA 58.642 33.333 0.00 0.00 45.00 2.52
4267 4474 7.883217 ACTTAACGAAGTGTTCTATCTGAAGA 58.117 34.615 0.00 0.00 45.00 2.87
4309 4516 7.219535 GCACACAGAGCATAATTATTTGTTCAG 59.780 37.037 0.00 0.00 0.00 3.02
4335 4543 1.070843 CACTGTGCGTAAACCTTCACG 60.071 52.381 0.00 0.00 41.04 4.35
4346 4554 1.714899 GCAGGTGAAACACTGTGCGT 61.715 55.000 7.90 0.00 39.98 5.24
4348 4556 1.009675 CGCAGGTGAAACACTGTGC 60.010 57.895 7.90 14.73 38.25 4.57
4369 4577 5.880054 AGTTACGCATATGCTTCAAACTT 57.120 34.783 24.56 10.24 39.32 2.66
4412 4620 4.742167 CACTGCGTCAGATAAGATAACAGG 59.258 45.833 12.77 0.00 35.18 4.00
4413 4621 5.344066 ACACTGCGTCAGATAAGATAACAG 58.656 41.667 12.77 0.00 35.18 3.16
4414 4622 5.324784 ACACTGCGTCAGATAAGATAACA 57.675 39.130 12.77 0.00 35.18 2.41
4415 4623 6.310467 TGAAACACTGCGTCAGATAAGATAAC 59.690 38.462 12.77 0.00 35.18 1.89
4416 4624 6.310467 GTGAAACACTGCGTCAGATAAGATAA 59.690 38.462 12.77 0.00 36.32 1.75
4417 4625 5.805486 GTGAAACACTGCGTCAGATAAGATA 59.195 40.000 12.77 0.00 36.32 1.98
4418 4626 4.627467 GTGAAACACTGCGTCAGATAAGAT 59.373 41.667 12.77 0.00 36.32 2.40
4459 4667 6.262049 TCTGGCGCATACACATTTATTTACAT 59.738 34.615 10.83 0.00 0.00 2.29
4476 4684 1.153647 CGACAACCTATCTGGCGCA 60.154 57.895 10.83 0.00 38.71 6.09
4482 4690 1.338337 CATCGCCTCGACAACCTATCT 59.662 52.381 0.00 0.00 39.18 1.98
4484 4692 1.067212 GTCATCGCCTCGACAACCTAT 59.933 52.381 0.00 0.00 39.18 2.57
4596 4959 6.804783 TCGTCATACATAAACATAGCATACCG 59.195 38.462 0.00 0.00 0.00 4.02
4674 5037 1.139853 CCAGAGCAGGTCCTTCATACC 59.860 57.143 0.00 0.00 37.27 2.73
4678 8333 1.537397 AGCCAGAGCAGGTCCTTCA 60.537 57.895 0.00 0.00 43.56 3.02
4685 8340 1.079266 GACACTGAGCCAGAGCAGG 60.079 63.158 8.91 0.00 43.56 4.85
4700 8355 2.248280 TTTTTGCTAGACGCCAGACA 57.752 45.000 0.00 0.00 38.05 3.41
4736 8391 2.010582 GCAACCAAGAACAACGCCCA 62.011 55.000 0.00 0.00 0.00 5.36
4737 8392 1.299850 GCAACCAAGAACAACGCCC 60.300 57.895 0.00 0.00 0.00 6.13
4738 8393 0.594796 CAGCAACCAAGAACAACGCC 60.595 55.000 0.00 0.00 0.00 5.68
4740 8395 1.021202 TCCAGCAACCAAGAACAACG 58.979 50.000 0.00 0.00 0.00 4.10
4741 8396 1.748493 TGTCCAGCAACCAAGAACAAC 59.252 47.619 0.00 0.00 0.00 3.32
4754 8472 4.216708 AGACCTAGTATACCTTGTCCAGC 58.783 47.826 0.00 0.00 0.00 4.85
4769 8487 7.226325 CAGCAATAAAAATCCAGAGAGACCTAG 59.774 40.741 0.00 0.00 0.00 3.02
4835 8553 7.121759 AGTGATCAATCTTTATTGTTGTCCCTG 59.878 37.037 0.00 0.00 42.66 4.45
5008 8753 3.928992 TGAAGTCGTGATTGATCTGAAGC 59.071 43.478 0.00 0.00 0.00 3.86
5026 8771 2.738521 CGCCACCACCTCGTGAAG 60.739 66.667 0.00 0.00 35.23 3.02
5027 8772 3.509137 GACGCCACCACCTCGTGAA 62.509 63.158 0.00 0.00 36.50 3.18
5028 8773 3.986006 GACGCCACCACCTCGTGA 61.986 66.667 0.00 0.00 36.50 4.35
5029 8774 3.916392 GAGACGCCACCACCTCGTG 62.916 68.421 0.00 0.00 36.50 4.35
5030 8775 3.681835 GAGACGCCACCACCTCGT 61.682 66.667 0.00 0.00 39.33 4.18
5031 8776 4.436998 GGAGACGCCACCACCTCG 62.437 72.222 0.00 0.00 36.34 4.63
5032 8777 3.311110 TGGAGACGCCACCACCTC 61.311 66.667 0.00 0.00 43.33 3.85
5040 8785 1.446366 GGTAGGGAATGGAGACGCC 59.554 63.158 0.00 0.00 37.10 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.