Multiple sequence alignment - TraesCS3B01G071500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G071500 chr3B 100.000 3398 0 0 1 3398 43193742 43190345 0.000000e+00 6276
1 TraesCS3B01G071500 chr3B 87.940 2189 170 37 671 2843 43312644 43314754 0.000000e+00 2494
2 TraesCS3B01G071500 chr3B 88.518 1829 165 26 951 2739 74176639 74178462 0.000000e+00 2172
3 TraesCS3B01G071500 chr3B 86.267 983 63 16 624 1593 74173301 74174224 0.000000e+00 1002
4 TraesCS3B01G071500 chr3B 88.889 333 27 4 671 995 74176313 74176643 5.280000e-108 401
5 TraesCS3B01G071500 chr3B 83.127 403 46 14 2887 3282 74178472 74178859 6.980000e-92 348
6 TraesCS3B01G071500 chr3B 79.691 517 66 20 2890 3397 43314708 43315194 1.510000e-88 337
7 TraesCS3B01G071500 chr3B 91.489 141 8 2 1 140 41795999 41795862 1.240000e-44 191
8 TraesCS3B01G071500 chr3B 89.855 138 10 3 473 610 43312400 43312533 1.250000e-39 174
9 TraesCS3B01G071500 chr3D 89.867 2635 202 29 219 2843 26020391 26017812 0.000000e+00 3326
10 TraesCS3B01G071500 chr3D 86.356 2250 183 30 624 2843 26073024 26075179 0.000000e+00 2340
11 TraesCS3B01G071500 chr3D 88.764 1691 160 18 1158 2843 25987839 25986174 0.000000e+00 2043
12 TraesCS3B01G071500 chr3D 87.210 993 108 12 1852 2842 25984954 25983979 0.000000e+00 1112
13 TraesCS3B01G071500 chr3D 86.398 397 40 6 2887 3281 25986225 25985841 4.050000e-114 422
14 TraesCS3B01G071500 chr3D 86.398 397 40 6 2887 3281 26017863 26017479 4.050000e-114 422
15 TraesCS3B01G071500 chr3D 81.696 519 58 16 2887 3397 26075130 26075619 6.830000e-107 398
16 TraesCS3B01G071500 chr3D 84.314 408 42 11 2887 3278 25984029 25983628 2.470000e-101 379
17 TraesCS3B01G071500 chr3D 80.748 535 39 25 593 1110 25988335 25987848 3.220000e-95 359
18 TraesCS3B01G071500 chr3A 94.624 1953 74 11 830 2777 35768441 35770367 0.000000e+00 2996
19 TraesCS3B01G071500 chr3A 87.600 1758 150 31 706 2434 35755300 35753582 0.000000e+00 1977
20 TraesCS3B01G071500 chr3A 87.469 399 37 11 2889 3281 35753264 35752873 6.690000e-122 448
21 TraesCS3B01G071500 chr3A 86.216 370 46 2 2475 2843 35753580 35753215 2.460000e-106 396
22 TraesCS3B01G071500 chr3A 81.638 354 44 13 2936 3282 35770367 35770706 1.200000e-69 274
23 TraesCS3B01G071500 chr3A 89.855 138 10 1 473 610 35755550 35755417 1.250000e-39 174
24 TraesCS3B01G071500 chr3A 89.231 130 6 1 496 625 35768265 35768386 4.540000e-34 156
25 TraesCS3B01G071500 chrUn 85.809 606 61 14 2239 2843 321665441 321664860 1.340000e-173 619
26 TraesCS3B01G071500 chrUn 86.398 397 40 6 2887 3281 321664911 321664527 4.050000e-114 422
27 TraesCS3B01G071500 chrUn 94.574 129 6 1 1 129 67066074 67066201 7.440000e-47 198
28 TraesCS3B01G071500 chr5B 85.025 394 27 9 536 922 479722007 479721639 4.140000e-99 372
29 TraesCS3B01G071500 chr5B 94.574 129 6 1 1 129 507033991 507034118 7.440000e-47 198
30 TraesCS3B01G071500 chr5B 93.846 130 7 1 1 129 32473790 32473919 9.620000e-46 195
31 TraesCS3B01G071500 chr1A 92.958 142 6 2 1 141 111990475 111990337 1.600000e-48 204
32 TraesCS3B01G071500 chr1A 93.233 133 7 2 1 132 109418341 109418210 9.620000e-46 195
33 TraesCS3B01G071500 chr6B 93.985 133 7 1 1 133 126251580 126251711 2.070000e-47 200
34 TraesCS3B01G071500 chr2A 92.537 134 9 1 1 133 398440569 398440436 1.240000e-44 191
35 TraesCS3B01G071500 chr4D 90.780 141 10 2 1 140 72665448 72665310 5.790000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G071500 chr3B 43190345 43193742 3397 True 6276.000000 6276 100.000000 1 3398 1 chr3B.!!$R2 3397
1 TraesCS3B01G071500 chr3B 43312400 43315194 2794 False 1001.666667 2494 85.828667 473 3397 3 chr3B.!!$F1 2924
2 TraesCS3B01G071500 chr3B 74173301 74178859 5558 False 980.750000 2172 86.700250 624 3282 4 chr3B.!!$F2 2658
3 TraesCS3B01G071500 chr3D 26017479 26020391 2912 True 1874.000000 3326 88.132500 219 3281 2 chr3D.!!$R2 3062
4 TraesCS3B01G071500 chr3D 26073024 26075619 2595 False 1369.000000 2340 84.026000 624 3397 2 chr3D.!!$F1 2773
5 TraesCS3B01G071500 chr3D 25983628 25988335 4707 True 863.000000 2043 85.486800 593 3281 5 chr3D.!!$R1 2688
6 TraesCS3B01G071500 chr3A 35768265 35770706 2441 False 1142.000000 2996 88.497667 496 3282 3 chr3A.!!$F1 2786
7 TraesCS3B01G071500 chr3A 35752873 35755550 2677 True 748.750000 1977 87.785000 473 3281 4 chr3A.!!$R1 2808
8 TraesCS3B01G071500 chrUn 321664527 321665441 914 True 520.500000 619 86.103500 2239 3281 2 chrUn.!!$R1 1042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 469 0.192315 GAGGGATAAGAGGAGGGGCT 59.808 60.000 0.0 0.0 0.0 5.19 F
718 3080 1.302832 CCTCTTCGGCAGCCAGTTT 60.303 57.895 13.3 0.0 0.0 2.66 F
1560 4051 0.877071 CAGTGTCCACCATTGAGCAC 59.123 55.000 0.0 0.0 32.8 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1546 4037 0.107643 TTCACGTGCTCAATGGTGGA 59.892 50.0 11.67 0.0 0.00 4.02 R
2229 4723 0.535335 TCTTATGTCCCGCTGTCCAC 59.465 55.0 0.00 0.0 0.00 4.02 R
3365 8084 0.387202 CACCCAAACGGCATTGTTCA 59.613 50.0 0.00 0.0 33.26 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.902308 GGCGGCGCCTTTAAAAAT 57.098 50.000 41.44 0.00 46.69 1.82
21 22 2.281140 GGCGGCGCCTTTAAAAATAA 57.719 45.000 41.44 0.00 46.69 1.40
23 24 2.994578 GGCGGCGCCTTTAAAAATAAAA 59.005 40.909 41.44 0.00 46.69 1.52
24 25 3.432592 GGCGGCGCCTTTAAAAATAAAAA 59.567 39.130 41.44 0.00 46.69 1.94
25 26 4.387936 GCGGCGCCTTTAAAAATAAAAAC 58.612 39.130 26.68 0.00 0.00 2.43
26 27 4.667161 GCGGCGCCTTTAAAAATAAAAACC 60.667 41.667 26.68 0.00 0.00 3.27
27 28 4.433152 CGGCGCCTTTAAAAATAAAAACCG 60.433 41.667 26.68 0.00 0.00 4.44
28 29 4.685165 GGCGCCTTTAAAAATAAAAACCGA 59.315 37.500 22.15 0.00 0.00 4.69
29 30 5.177142 GGCGCCTTTAAAAATAAAAACCGAA 59.823 36.000 22.15 0.00 0.00 4.30
30 31 6.128499 GGCGCCTTTAAAAATAAAAACCGAAT 60.128 34.615 22.15 0.00 0.00 3.34
31 32 6.951530 GCGCCTTTAAAAATAAAAACCGAATC 59.048 34.615 0.00 0.00 0.00 2.52
32 33 7.161595 CGCCTTTAAAAATAAAAACCGAATCG 58.838 34.615 0.00 0.00 0.00 3.34
33 34 7.148934 CGCCTTTAAAAATAAAAACCGAATCGT 60.149 33.333 0.82 0.00 0.00 3.73
34 35 8.489559 GCCTTTAAAAATAAAAACCGAATCGTT 58.510 29.630 0.82 0.00 0.00 3.85
43 44 9.955208 AATAAAAACCGAATCGTTTTCTTAACT 57.045 25.926 13.22 3.83 43.42 2.24
44 45 9.955208 ATAAAAACCGAATCGTTTTCTTAACTT 57.045 25.926 13.22 1.48 43.42 2.66
46 47 9.786105 AAAAACCGAATCGTTTTCTTAACTTAA 57.214 25.926 13.22 0.00 43.42 1.85
49 50 7.578852 ACCGAATCGTTTTCTTAACTTAAAGG 58.421 34.615 0.82 0.00 0.00 3.11
50 51 7.227314 ACCGAATCGTTTTCTTAACTTAAAGGT 59.773 33.333 0.82 0.00 0.00 3.50
51 52 7.532884 CCGAATCGTTTTCTTAACTTAAAGGTG 59.467 37.037 0.82 0.00 0.00 4.00
52 53 7.532884 CGAATCGTTTTCTTAACTTAAAGGTGG 59.467 37.037 0.00 0.00 0.00 4.61
53 54 6.063640 TCGTTTTCTTAACTTAAAGGTGGC 57.936 37.500 0.00 0.00 0.00 5.01
54 55 5.589452 TCGTTTTCTTAACTTAAAGGTGGCA 59.411 36.000 0.00 0.00 0.00 4.92
55 56 6.263617 TCGTTTTCTTAACTTAAAGGTGGCAT 59.736 34.615 0.00 0.00 0.00 4.40
57 58 7.749126 CGTTTTCTTAACTTAAAGGTGGCATAG 59.251 37.037 0.00 0.00 0.00 2.23
59 60 4.873827 TCTTAACTTAAAGGTGGCATAGCG 59.126 41.667 0.00 0.00 0.00 4.26
60 61 2.038387 ACTTAAAGGTGGCATAGCGG 57.962 50.000 0.00 0.00 0.00 5.52
62 63 0.621609 TTAAAGGTGGCATAGCGGGT 59.378 50.000 0.00 0.00 0.00 5.28
63 64 1.498264 TAAAGGTGGCATAGCGGGTA 58.502 50.000 0.00 0.00 0.00 3.69
64 65 0.621609 AAAGGTGGCATAGCGGGTAA 59.378 50.000 0.00 0.00 0.00 2.85
65 66 0.843984 AAGGTGGCATAGCGGGTAAT 59.156 50.000 0.00 0.00 0.00 1.89
66 67 0.843984 AGGTGGCATAGCGGGTAATT 59.156 50.000 0.00 0.00 0.00 1.40
67 68 1.214424 AGGTGGCATAGCGGGTAATTT 59.786 47.619 0.00 0.00 0.00 1.82
69 70 3.073946 AGGTGGCATAGCGGGTAATTTAT 59.926 43.478 0.00 0.00 0.00 1.40
70 71 4.287585 AGGTGGCATAGCGGGTAATTTATA 59.712 41.667 0.00 0.00 0.00 0.98
71 72 4.634443 GGTGGCATAGCGGGTAATTTATAG 59.366 45.833 0.00 0.00 0.00 1.31
72 73 4.094442 GTGGCATAGCGGGTAATTTATAGC 59.906 45.833 0.00 0.00 0.00 2.97
74 75 5.188163 TGGCATAGCGGGTAATTTATAGCTA 59.812 40.000 0.00 0.00 40.75 3.32
75 76 6.110707 GGCATAGCGGGTAATTTATAGCTAA 58.889 40.000 0.00 0.00 40.04 3.09
76 77 6.766467 GGCATAGCGGGTAATTTATAGCTAAT 59.234 38.462 0.00 0.00 40.04 1.73
77 78 7.282450 GGCATAGCGGGTAATTTATAGCTAATT 59.718 37.037 0.00 0.00 40.04 1.40
78 79 8.336080 GCATAGCGGGTAATTTATAGCTAATTC 58.664 37.037 0.00 0.00 40.04 2.17
79 80 6.963049 AGCGGGTAATTTATAGCTAATTCG 57.037 37.500 0.00 0.00 32.73 3.34
80 81 5.873164 AGCGGGTAATTTATAGCTAATTCGG 59.127 40.000 0.00 0.00 32.73 4.30
81 82 5.064325 GCGGGTAATTTATAGCTAATTCGGG 59.936 44.000 0.00 0.00 0.00 5.14
82 83 5.583457 CGGGTAATTTATAGCTAATTCGGGG 59.417 44.000 0.00 0.00 0.00 5.73
84 85 5.356190 GGTAATTTATAGCTAATTCGGGGGC 59.644 44.000 0.00 0.00 0.00 5.80
85 86 4.650972 ATTTATAGCTAATTCGGGGGCA 57.349 40.909 0.00 0.00 0.00 5.36
87 88 4.650972 TTATAGCTAATTCGGGGGCAAT 57.349 40.909 0.00 0.00 0.00 3.56
88 89 3.525800 ATAGCTAATTCGGGGGCAATT 57.474 42.857 0.00 0.00 0.00 2.32
89 90 4.650972 ATAGCTAATTCGGGGGCAATTA 57.349 40.909 0.00 0.00 0.00 1.40
90 91 3.525800 AGCTAATTCGGGGGCAATTAT 57.474 42.857 0.00 0.00 0.00 1.28
91 92 3.844640 AGCTAATTCGGGGGCAATTATT 58.155 40.909 0.00 0.00 0.00 1.40
93 94 4.039124 AGCTAATTCGGGGGCAATTATTTG 59.961 41.667 0.00 0.00 35.85 2.32
94 95 3.836365 AATTCGGGGGCAATTATTTGG 57.164 42.857 0.00 0.00 33.22 3.28
95 96 2.534042 TTCGGGGGCAATTATTTGGA 57.466 45.000 0.00 0.00 33.22 3.53
96 97 1.770294 TCGGGGGCAATTATTTGGAC 58.230 50.000 0.00 0.00 33.22 4.02
98 99 0.750249 GGGGGCAATTATTTGGACGG 59.250 55.000 0.00 0.00 33.22 4.79
99 100 1.686741 GGGGGCAATTATTTGGACGGA 60.687 52.381 0.00 0.00 33.22 4.69
101 102 1.064952 GGGCAATTATTTGGACGGACG 59.935 52.381 0.00 0.00 33.22 4.79
102 103 2.011222 GGCAATTATTTGGACGGACGA 58.989 47.619 0.00 0.00 33.22 4.20
103 104 2.223180 GGCAATTATTTGGACGGACGAC 60.223 50.000 0.00 0.00 33.22 4.34
104 105 2.417239 GCAATTATTTGGACGGACGACA 59.583 45.455 0.00 0.00 33.22 4.35
105 106 3.120130 GCAATTATTTGGACGGACGACAA 60.120 43.478 0.00 0.68 33.22 3.18
107 108 5.453648 CAATTATTTGGACGGACGACAAAA 58.546 37.500 17.45 10.17 37.60 2.44
108 109 5.692613 ATTATTTGGACGGACGACAAAAA 57.307 34.783 17.45 14.11 37.60 1.94
109 110 2.828874 TTTGGACGGACGACAAAAAC 57.171 45.000 13.51 0.00 31.79 2.43
111 112 1.292061 TGGACGGACGACAAAAACAG 58.708 50.000 0.00 0.00 0.00 3.16
112 113 1.292992 GGACGGACGACAAAAACAGT 58.707 50.000 0.00 0.00 0.00 3.55
114 115 3.062042 GGACGGACGACAAAAACAGTAT 58.938 45.455 0.00 0.00 0.00 2.12
115 116 3.495753 GGACGGACGACAAAAACAGTATT 59.504 43.478 0.00 0.00 0.00 1.89
116 117 4.024641 GGACGGACGACAAAAACAGTATTT 60.025 41.667 0.00 0.00 0.00 1.40
117 118 4.839796 ACGGACGACAAAAACAGTATTTG 58.160 39.130 0.00 0.00 42.18 2.32
118 119 3.662186 CGGACGACAAAAACAGTATTTGC 59.338 43.478 0.00 0.00 40.58 3.68
119 120 4.553938 CGGACGACAAAAACAGTATTTGCT 60.554 41.667 0.00 0.00 40.58 3.91
120 121 5.278604 GGACGACAAAAACAGTATTTGCTT 58.721 37.500 0.00 0.00 40.58 3.91
122 123 6.913673 GGACGACAAAAACAGTATTTGCTTTA 59.086 34.615 0.00 0.00 40.58 1.85
123 124 7.593644 GGACGACAAAAACAGTATTTGCTTTAT 59.406 33.333 0.00 0.00 40.58 1.40
124 125 8.865590 ACGACAAAAACAGTATTTGCTTTATT 57.134 26.923 0.00 0.00 40.58 1.40
153 154 5.817483 AGGGTAGATTAGGGTAGATAGGG 57.183 47.826 0.00 0.00 0.00 3.53
154 155 5.187134 AGGGTAGATTAGGGTAGATAGGGT 58.813 45.833 0.00 0.00 0.00 4.34
155 156 6.354184 AGGGTAGATTAGGGTAGATAGGGTA 58.646 44.000 0.00 0.00 0.00 3.69
156 157 6.451010 AGGGTAGATTAGGGTAGATAGGGTAG 59.549 46.154 0.00 0.00 0.00 3.18
157 158 6.449696 GGGTAGATTAGGGTAGATAGGGTAGA 59.550 46.154 0.00 0.00 0.00 2.59
158 159 7.130755 GGGTAGATTAGGGTAGATAGGGTAGAT 59.869 44.444 0.00 0.00 0.00 1.98
159 160 8.567851 GGTAGATTAGGGTAGATAGGGTAGATT 58.432 40.741 0.00 0.00 0.00 2.40
162 163 8.793720 AGATTAGGGTAGATAGGGTAGATTAGG 58.206 40.741 0.00 0.00 0.00 2.69
163 164 5.817483 AGGGTAGATAGGGTAGATTAGGG 57.183 47.826 0.00 0.00 0.00 3.53
164 165 4.549076 AGGGTAGATAGGGTAGATTAGGGG 59.451 50.000 0.00 0.00 0.00 4.79
165 166 4.297123 GGGTAGATAGGGTAGATTAGGGGT 59.703 50.000 0.00 0.00 0.00 4.95
167 168 6.354652 GGGTAGATAGGGTAGATTAGGGGTAG 60.355 50.000 0.00 0.00 0.00 3.18
168 169 6.449696 GGTAGATAGGGTAGATTAGGGGTAGA 59.550 46.154 0.00 0.00 0.00 2.59
169 170 6.661740 AGATAGGGTAGATTAGGGGTAGAG 57.338 45.833 0.00 0.00 0.00 2.43
171 172 2.728572 AGGGTAGATTAGGGGTAGAGGG 59.271 54.545 0.00 0.00 0.00 4.30
173 174 2.453991 GGTAGATTAGGGGTAGAGGGGT 59.546 54.545 0.00 0.00 0.00 4.95
174 175 3.664624 GGTAGATTAGGGGTAGAGGGGTA 59.335 52.174 0.00 0.00 0.00 3.69
175 176 4.264307 GGTAGATTAGGGGTAGAGGGGTAG 60.264 54.167 0.00 0.00 0.00 3.18
176 177 3.700950 AGATTAGGGGTAGAGGGGTAGA 58.299 50.000 0.00 0.00 0.00 2.59
178 179 5.440530 AGATTAGGGGTAGAGGGGTAGATA 58.559 45.833 0.00 0.00 0.00 1.98
179 180 6.053317 AGATTAGGGGTAGAGGGGTAGATAT 58.947 44.000 0.00 0.00 0.00 1.63
180 181 7.219409 AGATTAGGGGTAGAGGGGTAGATATA 58.781 42.308 0.00 0.00 0.00 0.86
181 182 6.922441 TTAGGGGTAGAGGGGTAGATATAG 57.078 45.833 0.00 0.00 0.00 1.31
182 183 5.065516 AGGGGTAGAGGGGTAGATATAGA 57.934 47.826 0.00 0.00 0.00 1.98
183 184 5.636399 AGGGGTAGAGGGGTAGATATAGAT 58.364 45.833 0.00 0.00 0.00 1.98
185 186 5.435707 GGGGTAGAGGGGTAGATATAGATCA 59.564 48.000 0.00 0.00 34.17 2.92
187 188 7.368838 GGGGTAGAGGGGTAGATATAGATCAAT 60.369 44.444 0.00 0.00 34.17 2.57
188 189 8.734763 GGGTAGAGGGGTAGATATAGATCAATA 58.265 40.741 0.00 0.00 34.17 1.90
192 193 9.207868 AGAGGGGTAGATATAGATCAATAAAGC 57.792 37.037 0.00 0.00 34.17 3.51
193 194 9.207868 GAGGGGTAGATATAGATCAATAAAGCT 57.792 37.037 0.00 0.00 34.17 3.74
194 195 8.986991 AGGGGTAGATATAGATCAATAAAGCTG 58.013 37.037 0.00 0.00 34.17 4.24
195 196 8.982723 GGGGTAGATATAGATCAATAAAGCTGA 58.017 37.037 0.00 0.00 34.17 4.26
197 198 9.528018 GGTAGATATAGATCAATAAAGCTGAGC 57.472 37.037 0.00 0.00 34.17 4.26
200 201 9.602568 AGATATAGATCAATAAAGCTGAGCATG 57.397 33.333 7.39 0.00 34.17 4.06
203 204 6.770746 AGATCAATAAAGCTGAGCATGTTT 57.229 33.333 7.39 0.86 31.55 2.83
205 206 5.314923 TCAATAAAGCTGAGCATGTTTCC 57.685 39.130 7.39 0.00 0.00 3.13
206 207 4.100529 CAATAAAGCTGAGCATGTTTCCG 58.899 43.478 7.39 0.00 0.00 4.30
208 209 0.607489 AAGCTGAGCATGTTTCCGCT 60.607 50.000 7.39 10.78 42.42 5.52
209 210 0.250234 AGCTGAGCATGTTTCCGCTA 59.750 50.000 7.39 0.00 38.99 4.26
210 211 1.134280 AGCTGAGCATGTTTCCGCTAT 60.134 47.619 7.39 0.00 38.99 2.97
211 212 2.103094 AGCTGAGCATGTTTCCGCTATA 59.897 45.455 7.39 0.00 38.99 1.31
213 214 3.499918 GCTGAGCATGTTTCCGCTATAAT 59.500 43.478 0.00 0.00 38.99 1.28
215 216 5.506317 GCTGAGCATGTTTCCGCTATAATTT 60.506 40.000 0.00 0.00 38.99 1.82
216 217 6.449635 TGAGCATGTTTCCGCTATAATTTT 57.550 33.333 0.00 0.00 38.99 1.82
217 218 6.862209 TGAGCATGTTTCCGCTATAATTTTT 58.138 32.000 0.00 0.00 38.99 1.94
323 324 6.847956 TTTAACCGATTCTCGAACTTTTCA 57.152 33.333 0.00 0.00 43.74 2.69
350 351 7.068103 TGCAGTAAATATGGTGAAATTACCCAG 59.932 37.037 0.00 0.00 40.09 4.45
369 370 3.214328 CAGTTACCCCTGTGGCATATTC 58.786 50.000 0.00 0.00 37.83 1.75
415 416 1.843206 TGAACCCCATGGATCGATTGA 59.157 47.619 15.22 0.00 36.26 2.57
416 417 2.158769 TGAACCCCATGGATCGATTGAG 60.159 50.000 15.22 0.00 36.26 3.02
468 469 0.192315 GAGGGATAAGAGGAGGGGCT 59.808 60.000 0.00 0.00 0.00 5.19
469 470 1.433592 GAGGGATAAGAGGAGGGGCTA 59.566 57.143 0.00 0.00 0.00 3.93
478 479 2.913060 GAGGGGCTACTCGGCGAT 60.913 66.667 11.27 3.37 39.52 4.58
494 495 1.520787 GATACCAACCAGACCGCGG 60.521 63.158 26.86 26.86 0.00 6.46
554 555 3.680786 CGGTGCGGTGACTCCAGA 61.681 66.667 0.00 0.00 35.57 3.86
557 558 1.666011 GTGCGGTGACTCCAGAGAA 59.334 57.895 0.70 0.00 35.57 2.87
584 585 4.131088 GTCCACTCCGGCGACCTC 62.131 72.222 9.30 0.00 33.14 3.85
672 3034 3.081409 CCTTGGGTCCGGATCCGT 61.081 66.667 31.22 0.00 37.81 4.69
714 3076 2.927856 TTCCCTCTTCGGCAGCCA 60.928 61.111 13.30 0.00 0.00 4.75
718 3080 1.302832 CCTCTTCGGCAGCCAGTTT 60.303 57.895 13.30 0.00 0.00 2.66
740 3108 1.984570 CTCTGTCTTGGGCCCTCGA 60.985 63.158 25.70 16.51 0.00 4.04
1287 3778 3.723235 CTGGCACTCCGCATACGCT 62.723 63.158 0.00 0.00 45.17 5.07
1494 3985 1.420702 CGTCGACGAGAGGTCTGAC 59.579 63.158 33.35 0.00 43.79 3.51
1546 4037 2.027377 CAGATTGCTCTCCCTTCAGTGT 60.027 50.000 0.00 0.00 0.00 3.55
1560 4051 0.877071 CAGTGTCCACCATTGAGCAC 59.123 55.000 0.00 0.00 32.80 4.40
1588 4079 4.081406 GCCCATATTTGATGAGCATGGTA 58.919 43.478 0.00 0.00 35.40 3.25
2031 4525 6.720309 TCATGACCATGATTTAGAACCTCAA 58.280 36.000 8.49 0.00 42.42 3.02
2229 4723 9.037737 TCCTATTTTACCGACGATAATTTTCTG 57.962 33.333 0.00 0.00 0.00 3.02
2237 4731 4.492570 CGACGATAATTTTCTGTGGACAGC 60.493 45.833 1.63 0.00 43.46 4.40
2330 4824 2.303022 CTCCTCAGCTTTGGTCCAACTA 59.697 50.000 2.98 0.00 0.00 2.24
2350 4844 2.662866 ATCCAGCTCCAATGTGGATTG 58.337 47.619 0.00 0.37 46.94 2.67
2382 4876 2.032620 AGAAAGATCTACGCGATGGGT 58.967 47.619 15.93 0.00 32.88 4.51
2421 4915 2.726760 GTGAAGTGAACTGCTACAGTCG 59.273 50.000 0.00 0.00 44.62 4.18
2445 4939 3.455990 TTAACACGAGGTGCAGTACAA 57.544 42.857 0.00 0.00 36.98 2.41
2608 5103 5.796424 ATGCAGGTGTTTTCAGAAAATCT 57.204 34.783 11.54 7.29 32.22 2.40
2613 5108 6.739565 GCAGGTGTTTTCAGAAAATCTTGGAT 60.740 38.462 11.54 0.00 32.22 3.41
2699 5194 4.285292 AGTTTCGTCAAGTACTGTACACG 58.715 43.478 19.27 18.51 0.00 4.49
2764 5261 5.197451 ACTTTGGTGTTGTTACTGGAATCA 58.803 37.500 0.00 0.00 0.00 2.57
2789 5286 6.377327 ACAGTGTTGTTTCCTACAGAAATG 57.623 37.500 0.00 0.00 45.99 2.32
2790 5287 6.119536 ACAGTGTTGTTTCCTACAGAAATGA 58.880 36.000 0.00 0.00 45.99 2.57
2791 5288 6.601613 ACAGTGTTGTTTCCTACAGAAATGAA 59.398 34.615 0.00 0.00 45.99 2.57
2792 5289 7.122055 ACAGTGTTGTTTCCTACAGAAATGAAA 59.878 33.333 0.00 0.00 45.99 2.69
2793 5290 7.973388 CAGTGTTGTTTCCTACAGAAATGAAAA 59.027 33.333 0.00 0.00 45.99 2.29
2794 5291 8.695456 AGTGTTGTTTCCTACAGAAATGAAAAT 58.305 29.630 0.00 0.00 45.99 1.82
2795 5292 9.959749 GTGTTGTTTCCTACAGAAATGAAAATA 57.040 29.630 0.00 0.00 45.99 1.40
2824 5321 9.853555 AAAATATAAGAGCTCTCTGTCATATCG 57.146 33.333 18.55 0.00 40.36 2.92
2825 5322 8.574251 AATATAAGAGCTCTCTGTCATATCGT 57.426 34.615 18.55 0.00 40.36 3.73
2826 5323 6.892658 ATAAGAGCTCTCTGTCATATCGTT 57.107 37.500 18.55 0.00 40.36 3.85
2827 5324 4.566545 AGAGCTCTCTGTCATATCGTTG 57.433 45.455 11.45 0.00 38.75 4.10
2828 5325 3.049206 GAGCTCTCTGTCATATCGTTGC 58.951 50.000 6.43 0.00 0.00 4.17
2829 5326 2.428530 AGCTCTCTGTCATATCGTTGCA 59.571 45.455 0.00 0.00 0.00 4.08
2830 5327 2.537625 GCTCTCTGTCATATCGTTGCAC 59.462 50.000 0.00 0.00 0.00 4.57
2831 5328 3.774066 CTCTCTGTCATATCGTTGCACA 58.226 45.455 0.00 0.00 0.00 4.57
2832 5329 3.511699 TCTCTGTCATATCGTTGCACAC 58.488 45.455 0.00 0.00 0.00 3.82
2833 5330 3.056891 TCTCTGTCATATCGTTGCACACA 60.057 43.478 0.00 0.00 0.00 3.72
2834 5331 3.658709 TCTGTCATATCGTTGCACACAA 58.341 40.909 0.00 0.00 0.00 3.33
2835 5332 3.679502 TCTGTCATATCGTTGCACACAAG 59.320 43.478 0.00 0.00 36.16 3.16
2836 5333 2.741517 TGTCATATCGTTGCACACAAGG 59.258 45.455 0.00 0.00 41.87 3.61
2845 5342 6.176975 TCGTTGCACACAAGGAAATATAAG 57.823 37.500 0.00 0.00 45.12 1.73
2846 5343 5.935206 TCGTTGCACACAAGGAAATATAAGA 59.065 36.000 0.00 0.00 45.12 2.10
2847 5344 6.092122 TCGTTGCACACAAGGAAATATAAGAG 59.908 38.462 0.00 0.00 45.12 2.85
2848 5345 5.818136 TGCACACAAGGAAATATAAGAGC 57.182 39.130 0.00 0.00 0.00 4.09
2849 5346 5.500234 TGCACACAAGGAAATATAAGAGCT 58.500 37.500 0.00 0.00 0.00 4.09
2850 5347 5.586243 TGCACACAAGGAAATATAAGAGCTC 59.414 40.000 5.27 5.27 0.00 4.09
2851 5348 5.008118 GCACACAAGGAAATATAAGAGCTCC 59.992 44.000 10.93 0.00 0.00 4.70
2852 5349 5.529060 CACACAAGGAAATATAAGAGCTCCC 59.471 44.000 10.93 1.26 0.00 4.30
2853 5350 5.191722 ACACAAGGAAATATAAGAGCTCCCA 59.808 40.000 10.93 0.00 0.00 4.37
2854 5351 6.122277 CACAAGGAAATATAAGAGCTCCCAA 58.878 40.000 10.93 0.00 0.00 4.12
2855 5352 6.261826 CACAAGGAAATATAAGAGCTCCCAAG 59.738 42.308 10.93 1.31 0.00 3.61
2856 5353 5.574970 AGGAAATATAAGAGCTCCCAAGG 57.425 43.478 10.93 0.00 0.00 3.61
2857 5354 5.227593 AGGAAATATAAGAGCTCCCAAGGA 58.772 41.667 10.93 0.00 0.00 3.36
2858 5355 5.854481 AGGAAATATAAGAGCTCCCAAGGAT 59.146 40.000 10.93 0.00 0.00 3.24
2859 5356 7.025620 AGGAAATATAAGAGCTCCCAAGGATA 58.974 38.462 10.93 0.02 0.00 2.59
2860 5357 7.517604 AGGAAATATAAGAGCTCCCAAGGATAA 59.482 37.037 10.93 0.00 0.00 1.75
2861 5358 8.332487 GGAAATATAAGAGCTCCCAAGGATAAT 58.668 37.037 10.93 0.00 0.00 1.28
2864 5361 8.917414 ATATAAGAGCTCCCAAGGATAATACA 57.083 34.615 10.93 0.00 0.00 2.29
2865 5362 5.975988 AAGAGCTCCCAAGGATAATACAA 57.024 39.130 10.93 0.00 0.00 2.41
2866 5363 5.559148 AGAGCTCCCAAGGATAATACAAG 57.441 43.478 10.93 0.00 0.00 3.16
2867 5364 4.349342 AGAGCTCCCAAGGATAATACAAGG 59.651 45.833 10.93 0.00 0.00 3.61
2868 5365 4.307259 AGCTCCCAAGGATAATACAAGGA 58.693 43.478 0.00 0.00 0.00 3.36
2869 5366 4.726825 AGCTCCCAAGGATAATACAAGGAA 59.273 41.667 0.00 0.00 0.00 3.36
2870 5367 5.193728 AGCTCCCAAGGATAATACAAGGAAA 59.806 40.000 0.00 0.00 0.00 3.13
2871 5368 5.891551 GCTCCCAAGGATAATACAAGGAAAA 59.108 40.000 0.00 0.00 0.00 2.29
2872 5369 6.551227 GCTCCCAAGGATAATACAAGGAAAAT 59.449 38.462 0.00 0.00 0.00 1.82
2873 5370 7.255625 GCTCCCAAGGATAATACAAGGAAAATC 60.256 40.741 0.00 0.00 0.00 2.17
2874 5371 7.066781 TCCCAAGGATAATACAAGGAAAATCC 58.933 38.462 0.00 0.00 36.58 3.01
2875 5372 6.838612 CCCAAGGATAATACAAGGAAAATCCA 59.161 38.462 0.00 0.00 39.61 3.41
2876 5373 7.014615 CCCAAGGATAATACAAGGAAAATCCAG 59.985 40.741 0.00 0.00 39.61 3.86
2877 5374 7.561356 CCAAGGATAATACAAGGAAAATCCAGT 59.439 37.037 0.00 0.00 39.61 4.00
2878 5375 9.627123 CAAGGATAATACAAGGAAAATCCAGTA 57.373 33.333 0.00 2.21 39.61 2.74
2883 5380 9.762381 ATAATACAAGGAAAATCCAGTAAACCA 57.238 29.630 0.00 0.00 39.61 3.67
2884 5381 8.664669 AATACAAGGAAAATCCAGTAAACCAT 57.335 30.769 0.00 0.00 39.61 3.55
2885 5382 6.590234 ACAAGGAAAATCCAGTAAACCATC 57.410 37.500 0.00 0.00 39.61 3.51
3021 5519 7.989826 AGTTTTAGAACCAAAGCATATAGCAG 58.010 34.615 0.00 0.00 40.35 4.24
3060 5560 9.612066 AAAATTACAAGTTCACAACAATCCATT 57.388 25.926 0.00 0.00 0.00 3.16
3066 5566 7.225145 ACAAGTTCACAACAATCCATTTCATTG 59.775 33.333 0.00 0.00 37.29 2.82
3166 7882 0.172803 GTAGGTGTGCTCACGTAGGG 59.827 60.000 18.59 0.00 42.79 3.53
3231 7947 2.932614 GCGAACAGCTACTGAATGATGT 59.067 45.455 0.78 0.00 44.04 3.06
3232 7948 4.112634 GCGAACAGCTACTGAATGATGTA 58.887 43.478 0.78 0.00 44.04 2.29
3244 7960 5.105675 ACTGAATGATGTATGTTGCAATGCA 60.106 36.000 2.72 2.72 36.47 3.96
3263 7981 5.494632 TGCATGATCATCTACAAAAGCAG 57.505 39.130 4.86 0.00 0.00 4.24
3266 7984 5.065602 GCATGATCATCTACAAAAGCAGACA 59.934 40.000 4.86 0.00 0.00 3.41
3268 7986 7.681304 GCATGATCATCTACAAAAGCAGACAAT 60.681 37.037 4.86 0.00 0.00 2.71
3269 7987 7.692460 TGATCATCTACAAAAGCAGACAATT 57.308 32.000 0.00 0.00 0.00 2.32
3281 7999 5.972107 AGCAGACAATTGTTAGCTCAAAT 57.028 34.783 24.50 9.74 34.78 2.32
3282 8000 5.706916 AGCAGACAATTGTTAGCTCAAATG 58.293 37.500 24.50 0.00 34.78 2.32
3285 8003 6.320171 CAGACAATTGTTAGCTCAAATGGAG 58.680 40.000 13.36 0.00 46.93 3.86
3288 8006 7.665559 AGACAATTGTTAGCTCAAATGGAGTAA 59.334 33.333 13.36 0.00 45.88 2.24
3289 8007 8.177119 ACAATTGTTAGCTCAAATGGAGTAAA 57.823 30.769 4.92 0.00 45.88 2.01
3291 8009 9.079833 CAATTGTTAGCTCAAATGGAGTAAATG 57.920 33.333 0.00 0.00 45.88 2.32
3292 8010 7.759489 TTGTTAGCTCAAATGGAGTAAATGT 57.241 32.000 0.00 0.00 45.88 2.71
3293 8011 7.377766 TGTTAGCTCAAATGGAGTAAATGTC 57.622 36.000 0.00 0.00 45.88 3.06
3294 8012 6.939730 TGTTAGCTCAAATGGAGTAAATGTCA 59.060 34.615 0.00 0.00 45.88 3.58
3295 8013 7.611467 TGTTAGCTCAAATGGAGTAAATGTCAT 59.389 33.333 0.00 0.00 45.88 3.06
3306 8025 6.883756 TGGAGTAAATGTCATCTATGTTGCAA 59.116 34.615 0.00 0.00 0.00 4.08
3309 8028 7.198390 AGTAAATGTCATCTATGTTGCAATGC 58.802 34.615 0.59 0.00 0.00 3.56
3310 8029 5.585820 AATGTCATCTATGTTGCAATGCA 57.414 34.783 2.72 2.72 36.47 3.96
3311 8030 4.359971 TGTCATCTATGTTGCAATGCAC 57.640 40.909 7.72 4.04 38.71 4.57
3312 8031 3.757493 TGTCATCTATGTTGCAATGCACA 59.243 39.130 7.72 10.17 38.71 4.57
3313 8032 4.217983 TGTCATCTATGTTGCAATGCACAA 59.782 37.500 7.72 0.00 38.71 3.33
3314 8033 5.162794 GTCATCTATGTTGCAATGCACAAA 58.837 37.500 7.72 0.00 38.71 2.83
3315 8034 5.808540 GTCATCTATGTTGCAATGCACAAAT 59.191 36.000 7.72 4.54 38.71 2.32
3316 8035 6.020121 GTCATCTATGTTGCAATGCACAAATC 60.020 38.462 7.72 0.00 38.71 2.17
3317 8036 5.388408 TCTATGTTGCAATGCACAAATCA 57.612 34.783 7.72 3.16 38.71 2.57
3318 8037 5.968254 TCTATGTTGCAATGCACAAATCAT 58.032 33.333 7.72 10.22 38.71 2.45
3319 8038 7.098074 TCTATGTTGCAATGCACAAATCATA 57.902 32.000 7.72 10.77 38.71 2.15
3334 8053 7.376866 GCACAAATCATATGTTGGAGTAAATCG 59.623 37.037 1.90 0.00 0.00 3.34
3385 8104 0.319469 GAACAATGCCGTTTGGGTGG 60.319 55.000 0.00 0.00 38.44 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.433152 CGGTTTTTATTTTTAAAGGCGCCG 60.433 41.667 23.20 0.00 0.00 6.46
5 6 4.685165 TCGGTTTTTATTTTTAAAGGCGCC 59.315 37.500 21.89 21.89 0.00 6.53
6 7 5.825905 TCGGTTTTTATTTTTAAAGGCGC 57.174 34.783 0.00 0.00 0.00 6.53
8 9 8.009984 ACGATTCGGTTTTTATTTTTAAAGGC 57.990 30.769 11.29 0.00 0.00 4.35
17 18 9.955208 AGTTAAGAAAACGATTCGGTTTTTATT 57.045 25.926 21.84 17.65 46.98 1.40
18 19 9.955208 AAGTTAAGAAAACGATTCGGTTTTTAT 57.045 25.926 21.84 13.68 46.98 1.40
20 21 9.786105 TTAAGTTAAGAAAACGATTCGGTTTTT 57.214 25.926 21.84 14.45 46.98 1.94
21 22 9.786105 TTTAAGTTAAGAAAACGATTCGGTTTT 57.214 25.926 21.84 17.68 46.98 2.43
23 24 8.071967 CCTTTAAGTTAAGAAAACGATTCGGTT 58.928 33.333 11.29 7.36 38.92 4.44
24 25 7.227314 ACCTTTAAGTTAAGAAAACGATTCGGT 59.773 33.333 11.29 0.00 0.00 4.69
25 26 7.532884 CACCTTTAAGTTAAGAAAACGATTCGG 59.467 37.037 11.29 0.00 0.00 4.30
26 27 7.532884 CCACCTTTAAGTTAAGAAAACGATTCG 59.467 37.037 4.14 4.14 0.00 3.34
27 28 7.325338 GCCACCTTTAAGTTAAGAAAACGATTC 59.675 37.037 0.00 0.00 0.00 2.52
28 29 7.143340 GCCACCTTTAAGTTAAGAAAACGATT 58.857 34.615 0.00 0.00 0.00 3.34
29 30 6.263617 TGCCACCTTTAAGTTAAGAAAACGAT 59.736 34.615 0.00 0.00 0.00 3.73
30 31 5.589452 TGCCACCTTTAAGTTAAGAAAACGA 59.411 36.000 0.00 0.00 0.00 3.85
31 32 5.823353 TGCCACCTTTAAGTTAAGAAAACG 58.177 37.500 0.00 0.00 0.00 3.60
32 33 7.541091 GCTATGCCACCTTTAAGTTAAGAAAAC 59.459 37.037 0.00 0.00 0.00 2.43
33 34 7.574217 CGCTATGCCACCTTTAAGTTAAGAAAA 60.574 37.037 0.00 0.00 0.00 2.29
34 35 6.128117 CGCTATGCCACCTTTAAGTTAAGAAA 60.128 38.462 0.00 0.00 0.00 2.52
36 37 4.873827 CGCTATGCCACCTTTAAGTTAAGA 59.126 41.667 0.00 0.00 0.00 2.10
37 38 4.035208 CCGCTATGCCACCTTTAAGTTAAG 59.965 45.833 0.00 0.00 0.00 1.85
38 39 3.942748 CCGCTATGCCACCTTTAAGTTAA 59.057 43.478 0.00 0.00 0.00 2.01
39 40 3.537580 CCGCTATGCCACCTTTAAGTTA 58.462 45.455 0.00 0.00 0.00 2.24
40 41 2.365582 CCGCTATGCCACCTTTAAGTT 58.634 47.619 0.00 0.00 0.00 2.66
41 42 1.408266 CCCGCTATGCCACCTTTAAGT 60.408 52.381 0.00 0.00 0.00 2.24
42 43 1.308998 CCCGCTATGCCACCTTTAAG 58.691 55.000 0.00 0.00 0.00 1.85
43 44 0.621609 ACCCGCTATGCCACCTTTAA 59.378 50.000 0.00 0.00 0.00 1.52
44 45 1.498264 TACCCGCTATGCCACCTTTA 58.502 50.000 0.00 0.00 0.00 1.85
45 46 0.621609 TTACCCGCTATGCCACCTTT 59.378 50.000 0.00 0.00 0.00 3.11
46 47 0.843984 ATTACCCGCTATGCCACCTT 59.156 50.000 0.00 0.00 0.00 3.50
49 50 4.094442 GCTATAAATTACCCGCTATGCCAC 59.906 45.833 0.00 0.00 0.00 5.01
50 51 4.019681 AGCTATAAATTACCCGCTATGCCA 60.020 41.667 0.00 0.00 0.00 4.92
51 52 4.514401 AGCTATAAATTACCCGCTATGCC 58.486 43.478 0.00 0.00 0.00 4.40
52 53 7.787725 ATTAGCTATAAATTACCCGCTATGC 57.212 36.000 0.00 0.00 31.01 3.14
53 54 8.540492 CGAATTAGCTATAAATTACCCGCTATG 58.460 37.037 0.00 0.00 31.01 2.23
54 55 7.709613 CCGAATTAGCTATAAATTACCCGCTAT 59.290 37.037 0.00 0.00 31.01 2.97
55 56 7.037438 CCGAATTAGCTATAAATTACCCGCTA 58.963 38.462 0.00 0.00 0.00 4.26
57 58 5.064325 CCCGAATTAGCTATAAATTACCCGC 59.936 44.000 0.00 0.00 0.00 6.13
59 60 5.884232 CCCCCGAATTAGCTATAAATTACCC 59.116 44.000 0.00 0.00 0.00 3.69
60 61 5.356190 GCCCCCGAATTAGCTATAAATTACC 59.644 44.000 0.00 0.00 0.00 2.85
62 63 6.129414 TGCCCCCGAATTAGCTATAAATTA 57.871 37.500 0.00 0.00 0.00 1.40
63 64 4.993028 TGCCCCCGAATTAGCTATAAATT 58.007 39.130 0.00 0.00 0.00 1.82
64 65 4.650972 TGCCCCCGAATTAGCTATAAAT 57.349 40.909 0.00 0.00 0.00 1.40
65 66 4.440826 TTGCCCCCGAATTAGCTATAAA 57.559 40.909 0.00 0.00 0.00 1.40
66 67 4.650972 ATTGCCCCCGAATTAGCTATAA 57.349 40.909 0.00 0.00 0.00 0.98
67 68 4.650972 AATTGCCCCCGAATTAGCTATA 57.349 40.909 0.00 0.00 0.00 1.31
69 70 4.650972 ATAATTGCCCCCGAATTAGCTA 57.349 40.909 0.00 0.00 30.69 3.32
70 71 3.525800 ATAATTGCCCCCGAATTAGCT 57.474 42.857 0.00 0.00 30.69 3.32
71 72 4.306600 CAAATAATTGCCCCCGAATTAGC 58.693 43.478 0.00 0.00 30.69 3.09
72 73 4.586841 TCCAAATAATTGCCCCCGAATTAG 59.413 41.667 0.00 0.00 35.10 1.73
74 75 3.133901 GTCCAAATAATTGCCCCCGAATT 59.866 43.478 0.00 0.00 35.10 2.17
75 76 2.698274 GTCCAAATAATTGCCCCCGAAT 59.302 45.455 0.00 0.00 35.10 3.34
76 77 2.104170 GTCCAAATAATTGCCCCCGAA 58.896 47.619 0.00 0.00 35.10 4.30
77 78 1.770294 GTCCAAATAATTGCCCCCGA 58.230 50.000 0.00 0.00 35.10 5.14
78 79 0.383949 CGTCCAAATAATTGCCCCCG 59.616 55.000 0.00 0.00 35.10 5.73
79 80 0.750249 CCGTCCAAATAATTGCCCCC 59.250 55.000 0.00 0.00 35.10 5.40
80 81 1.407618 GTCCGTCCAAATAATTGCCCC 59.592 52.381 0.00 0.00 35.10 5.80
81 82 1.064952 CGTCCGTCCAAATAATTGCCC 59.935 52.381 0.00 0.00 35.10 5.36
82 83 2.011222 TCGTCCGTCCAAATAATTGCC 58.989 47.619 0.00 0.00 35.10 4.52
84 85 4.671880 TTGTCGTCCGTCCAAATAATTG 57.328 40.909 0.00 0.00 36.25 2.32
85 86 5.692613 TTTTGTCGTCCGTCCAAATAATT 57.307 34.783 7.64 0.00 0.00 1.40
87 88 4.334759 TGTTTTTGTCGTCCGTCCAAATAA 59.665 37.500 7.64 4.53 0.00 1.40
88 89 3.875727 TGTTTTTGTCGTCCGTCCAAATA 59.124 39.130 7.64 2.76 0.00 1.40
89 90 2.683867 TGTTTTTGTCGTCCGTCCAAAT 59.316 40.909 7.64 0.00 0.00 2.32
90 91 2.082231 TGTTTTTGTCGTCCGTCCAAA 58.918 42.857 4.18 4.18 0.00 3.28
91 92 1.666700 CTGTTTTTGTCGTCCGTCCAA 59.333 47.619 0.00 0.00 0.00 3.53
93 94 1.292992 ACTGTTTTTGTCGTCCGTCC 58.707 50.000 0.00 0.00 0.00 4.79
94 95 4.720530 AATACTGTTTTTGTCGTCCGTC 57.279 40.909 0.00 0.00 0.00 4.79
95 96 4.787245 GCAAATACTGTTTTTGTCGTCCGT 60.787 41.667 19.83 0.00 36.63 4.69
96 97 3.662186 GCAAATACTGTTTTTGTCGTCCG 59.338 43.478 19.83 0.08 36.63 4.79
98 99 6.806120 AAAGCAAATACTGTTTTTGTCGTC 57.194 33.333 19.83 7.79 35.12 4.20
99 100 8.865590 AATAAAGCAAATACTGTTTTTGTCGT 57.134 26.923 19.83 10.93 39.06 4.34
127 128 9.022851 CCCTATCTACCCTAATCTACCCTAATA 57.977 40.741 0.00 0.00 0.00 0.98
129 130 6.806795 ACCCTATCTACCCTAATCTACCCTAA 59.193 42.308 0.00 0.00 0.00 2.69
130 131 6.354184 ACCCTATCTACCCTAATCTACCCTA 58.646 44.000 0.00 0.00 0.00 3.53
131 132 5.187134 ACCCTATCTACCCTAATCTACCCT 58.813 45.833 0.00 0.00 0.00 4.34
132 133 5.549229 ACCCTATCTACCCTAATCTACCC 57.451 47.826 0.00 0.00 0.00 3.69
133 134 7.522249 TCTACCCTATCTACCCTAATCTACC 57.478 44.000 0.00 0.00 0.00 3.18
136 137 8.793720 CCTAATCTACCCTATCTACCCTAATCT 58.206 40.741 0.00 0.00 0.00 2.40
137 138 8.005976 CCCTAATCTACCCTATCTACCCTAATC 58.994 44.444 0.00 0.00 0.00 1.75
138 139 7.090984 CCCCTAATCTACCCTATCTACCCTAAT 60.091 44.444 0.00 0.00 0.00 1.73
139 140 6.221240 CCCCTAATCTACCCTATCTACCCTAA 59.779 46.154 0.00 0.00 0.00 2.69
140 141 5.740104 CCCCTAATCTACCCTATCTACCCTA 59.260 48.000 0.00 0.00 0.00 3.53
141 142 4.549076 CCCCTAATCTACCCTATCTACCCT 59.451 50.000 0.00 0.00 0.00 4.34
144 145 7.366732 CCTCTACCCCTAATCTACCCTATCTAC 60.367 48.148 0.00 0.00 0.00 2.59
145 146 6.681990 CCTCTACCCCTAATCTACCCTATCTA 59.318 46.154 0.00 0.00 0.00 1.98
146 147 5.496902 CCTCTACCCCTAATCTACCCTATCT 59.503 48.000 0.00 0.00 0.00 1.98
147 148 5.341031 CCCTCTACCCCTAATCTACCCTATC 60.341 52.000 0.00 0.00 0.00 2.08
148 149 4.549076 CCCTCTACCCCTAATCTACCCTAT 59.451 50.000 0.00 0.00 0.00 2.57
149 150 3.927975 CCCTCTACCCCTAATCTACCCTA 59.072 52.174 0.00 0.00 0.00 3.53
151 152 2.225573 CCCCTCTACCCCTAATCTACCC 60.226 59.091 0.00 0.00 0.00 3.69
152 153 2.453991 ACCCCTCTACCCCTAATCTACC 59.546 54.545 0.00 0.00 0.00 3.18
153 154 3.919304 ACCCCTCTACCCCTAATCTAC 57.081 52.381 0.00 0.00 0.00 2.59
154 155 4.859970 TCTACCCCTCTACCCCTAATCTA 58.140 47.826 0.00 0.00 0.00 1.98
155 156 3.700950 TCTACCCCTCTACCCCTAATCT 58.299 50.000 0.00 0.00 0.00 2.40
156 157 4.696040 ATCTACCCCTCTACCCCTAATC 57.304 50.000 0.00 0.00 0.00 1.75
157 158 7.219409 TCTATATCTACCCCTCTACCCCTAAT 58.781 42.308 0.00 0.00 0.00 1.73
158 159 6.597506 TCTATATCTACCCCTCTACCCCTAA 58.402 44.000 0.00 0.00 0.00 2.69
159 160 6.203230 TCTATATCTACCCCTCTACCCCTA 57.797 45.833 0.00 0.00 0.00 3.53
160 161 5.065516 TCTATATCTACCCCTCTACCCCT 57.934 47.826 0.00 0.00 0.00 4.79
161 162 5.435707 TGATCTATATCTACCCCTCTACCCC 59.564 48.000 0.00 0.00 32.93 4.95
162 163 6.593759 TGATCTATATCTACCCCTCTACCC 57.406 45.833 0.00 0.00 32.93 3.69
167 168 9.207868 AGCTTTATTGATCTATATCTACCCCTC 57.792 37.037 0.00 0.00 32.93 4.30
168 169 8.986991 CAGCTTTATTGATCTATATCTACCCCT 58.013 37.037 0.00 0.00 32.93 4.79
169 170 8.982723 TCAGCTTTATTGATCTATATCTACCCC 58.017 37.037 0.00 0.00 32.93 4.95
171 172 9.528018 GCTCAGCTTTATTGATCTATATCTACC 57.472 37.037 0.00 0.00 32.93 3.18
174 175 9.602568 CATGCTCAGCTTTATTGATCTATATCT 57.397 33.333 0.00 0.00 32.93 1.98
175 176 9.381033 ACATGCTCAGCTTTATTGATCTATATC 57.619 33.333 0.00 0.00 0.00 1.63
176 177 9.736414 AACATGCTCAGCTTTATTGATCTATAT 57.264 29.630 0.00 0.00 0.00 0.86
178 179 8.461249 AAACATGCTCAGCTTTATTGATCTAT 57.539 30.769 0.00 0.00 0.00 1.98
179 180 7.012704 GGAAACATGCTCAGCTTTATTGATCTA 59.987 37.037 0.00 0.00 0.00 1.98
180 181 6.183360 GGAAACATGCTCAGCTTTATTGATCT 60.183 38.462 0.00 0.00 0.00 2.75
181 182 5.975939 GGAAACATGCTCAGCTTTATTGATC 59.024 40.000 0.00 0.00 0.00 2.92
182 183 5.449588 CGGAAACATGCTCAGCTTTATTGAT 60.450 40.000 0.00 0.00 0.00 2.57
183 184 4.142622 CGGAAACATGCTCAGCTTTATTGA 60.143 41.667 0.00 0.00 0.00 2.57
185 186 3.428045 GCGGAAACATGCTCAGCTTTATT 60.428 43.478 11.62 0.00 32.12 1.40
187 188 1.468520 GCGGAAACATGCTCAGCTTTA 59.531 47.619 11.62 0.00 32.12 1.85
188 189 0.242017 GCGGAAACATGCTCAGCTTT 59.758 50.000 11.62 0.00 32.12 3.51
189 190 0.607489 AGCGGAAACATGCTCAGCTT 60.607 50.000 14.60 0.00 40.79 3.74
190 191 0.250234 TAGCGGAAACATGCTCAGCT 59.750 50.000 21.08 21.08 44.81 4.24
192 193 5.679734 AATTATAGCGGAAACATGCTCAG 57.320 39.130 0.00 0.00 42.48 3.35
193 194 6.449635 AAAATTATAGCGGAAACATGCTCA 57.550 33.333 0.00 0.00 42.48 4.26
238 239 9.689501 TTCGGGGAATCAGTTAATAAAACTTAT 57.310 29.630 0.00 0.00 0.00 1.73
239 240 9.517868 TTTCGGGGAATCAGTTAATAAAACTTA 57.482 29.630 0.00 0.00 0.00 2.24
241 242 8.411991 TTTTCGGGGAATCAGTTAATAAAACT 57.588 30.769 0.00 0.00 0.00 2.66
242 243 7.274904 GCTTTTCGGGGAATCAGTTAATAAAAC 59.725 37.037 0.00 0.00 0.00 2.43
244 245 6.434652 TGCTTTTCGGGGAATCAGTTAATAAA 59.565 34.615 0.00 0.00 0.00 1.40
246 247 5.502079 TGCTTTTCGGGGAATCAGTTAATA 58.498 37.500 0.00 0.00 0.00 0.98
247 248 4.340617 TGCTTTTCGGGGAATCAGTTAAT 58.659 39.130 0.00 0.00 0.00 1.40
323 324 7.563188 TGGGTAATTTCACCATATTTACTGCAT 59.437 33.333 0.00 0.00 40.65 3.96
350 351 2.218603 CGAATATGCCACAGGGGTAAC 58.781 52.381 0.00 0.00 39.65 2.50
369 370 1.936547 GCCAGGTAGAGAGAAATTGCG 59.063 52.381 0.00 0.00 0.00 4.85
415 416 4.328118 AAGAGCAGGGAATTTTGATCCT 57.672 40.909 0.00 0.00 37.14 3.24
416 417 4.463891 TGAAAGAGCAGGGAATTTTGATCC 59.536 41.667 0.00 0.00 36.16 3.36
468 469 0.742505 CTGGTTGGTATCGCCGAGTA 59.257 55.000 0.00 0.00 41.21 2.59
469 470 0.968901 TCTGGTTGGTATCGCCGAGT 60.969 55.000 0.00 0.00 41.21 4.18
478 479 2.601067 TCCGCGGTCTGGTTGGTA 60.601 61.111 27.15 0.00 0.00 3.25
585 586 4.131088 GTGGCGGTCCGAGACTCC 62.131 72.222 17.49 6.70 34.14 3.85
586 587 4.477975 CGTGGCGGTCCGAGACTC 62.478 72.222 17.49 4.36 34.14 3.36
714 3076 1.972872 CCCAAGACAGAGCACAAACT 58.027 50.000 0.00 0.00 0.00 2.66
718 3080 2.431683 GGCCCAAGACAGAGCACA 59.568 61.111 0.00 0.00 0.00 4.57
740 3108 2.187958 TCCACGAACTCTGATTCCCAT 58.812 47.619 0.00 0.00 0.00 4.00
894 3265 7.863901 AAGTCCTGCCAATACTTATAGATCT 57.136 36.000 0.00 0.00 31.84 2.75
1287 3778 1.122632 TCCCAAGGGTGCGTAACTCA 61.123 55.000 4.80 0.00 36.47 3.41
1291 3782 1.002315 GTACTTCCCAAGGGTGCGTAA 59.998 52.381 4.80 0.00 36.47 3.18
1494 3985 3.697542 TGATTGGATTCAGAAGGTGCATG 59.302 43.478 0.00 0.00 0.00 4.06
1546 4037 0.107643 TTCACGTGCTCAATGGTGGA 59.892 50.000 11.67 0.00 0.00 4.02
1560 4051 3.304257 GCTCATCAAATATGGGCTTCACG 60.304 47.826 2.60 0.00 42.03 4.35
1588 4079 2.423892 ACATCTCGTACTCGCAGACATT 59.576 45.455 0.00 0.00 36.96 2.71
2031 4525 2.834549 CCAGTACTCAGATGAACCAGGT 59.165 50.000 0.00 0.00 0.00 4.00
2038 4532 5.816682 TGTAGTCTTCCAGTACTCAGATGA 58.183 41.667 0.00 0.00 32.61 2.92
2229 4723 0.535335 TCTTATGTCCCGCTGTCCAC 59.465 55.000 0.00 0.00 0.00 4.02
2237 4731 4.025730 CACGATGATTGTTCTTATGTCCCG 60.026 45.833 0.00 0.00 0.00 5.14
2382 4876 5.769662 ACTTCACAGTTATTGGCTCATTGAA 59.230 36.000 0.00 0.00 0.00 2.69
2395 4889 5.163447 ACTGTAGCAGTTCACTTCACAGTTA 60.163 40.000 10.28 0.00 42.59 2.24
2421 4915 1.535462 ACTGCACCTCGTGTTAATTGC 59.465 47.619 0.00 0.00 35.75 3.56
2445 4939 2.672381 GACTCGAGTAGTAGCGTCTTGT 59.328 50.000 20.09 0.00 39.07 3.16
2608 5103 3.996363 CGCGATGATTCCATCTTATCCAA 59.004 43.478 0.00 0.00 45.37 3.53
2613 5108 4.848562 ACTACGCGATGATTCCATCTTA 57.151 40.909 15.93 0.00 45.37 2.10
2683 5178 2.978489 GAGCACGTGTACAGTACTTGAC 59.022 50.000 18.38 1.35 0.00 3.18
2688 5183 3.278367 TGAAGAGCACGTGTACAGTAC 57.722 47.619 18.38 3.49 0.00 2.73
2798 5295 9.853555 CGATATGACAGAGAGCTCTTATATTTT 57.146 33.333 19.36 3.60 37.98 1.82
2799 5296 9.019656 ACGATATGACAGAGAGCTCTTATATTT 57.980 33.333 19.36 5.11 37.98 1.40
2800 5297 8.574251 ACGATATGACAGAGAGCTCTTATATT 57.426 34.615 19.36 4.59 37.98 1.28
2801 5298 8.458052 CAACGATATGACAGAGAGCTCTTATAT 58.542 37.037 19.36 15.48 37.98 0.86
2802 5299 7.574030 GCAACGATATGACAGAGAGCTCTTATA 60.574 40.741 19.36 11.79 37.98 0.98
2803 5300 6.676950 CAACGATATGACAGAGAGCTCTTAT 58.323 40.000 19.36 10.35 37.98 1.73
2804 5301 5.506483 GCAACGATATGACAGAGAGCTCTTA 60.506 44.000 19.36 5.28 37.98 2.10
2805 5302 4.736168 GCAACGATATGACAGAGAGCTCTT 60.736 45.833 19.36 0.88 37.98 2.85
2806 5303 3.243367 GCAACGATATGACAGAGAGCTCT 60.243 47.826 18.28 18.28 41.37 4.09
2807 5304 3.049206 GCAACGATATGACAGAGAGCTC 58.951 50.000 5.27 5.27 0.00 4.09
2808 5305 2.428530 TGCAACGATATGACAGAGAGCT 59.571 45.455 0.00 0.00 0.00 4.09
2809 5306 2.537625 GTGCAACGATATGACAGAGAGC 59.462 50.000 0.00 0.00 0.00 4.09
2810 5307 3.549471 GTGTGCAACGATATGACAGAGAG 59.451 47.826 0.00 0.00 42.39 3.20
2811 5308 3.056891 TGTGTGCAACGATATGACAGAGA 60.057 43.478 0.00 0.00 42.39 3.10
2812 5309 3.253230 TGTGTGCAACGATATGACAGAG 58.747 45.455 0.00 0.00 42.39 3.35
2813 5310 3.311486 TGTGTGCAACGATATGACAGA 57.689 42.857 0.00 0.00 42.39 3.41
2814 5311 3.181517 CCTTGTGTGCAACGATATGACAG 60.182 47.826 0.00 0.00 42.39 3.51
2815 5312 2.741517 CCTTGTGTGCAACGATATGACA 59.258 45.455 0.00 0.00 42.39 3.58
2816 5313 3.000041 TCCTTGTGTGCAACGATATGAC 59.000 45.455 0.00 0.00 42.39 3.06
2817 5314 3.326836 TCCTTGTGTGCAACGATATGA 57.673 42.857 0.00 0.00 42.39 2.15
2818 5315 4.418013 TTTCCTTGTGTGCAACGATATG 57.582 40.909 0.00 0.00 42.39 1.78
2819 5316 6.942532 ATATTTCCTTGTGTGCAACGATAT 57.057 33.333 0.00 0.00 42.39 1.63
2820 5317 7.766738 TCTTATATTTCCTTGTGTGCAACGATA 59.233 33.333 0.00 0.00 42.39 2.92
2821 5318 6.597672 TCTTATATTTCCTTGTGTGCAACGAT 59.402 34.615 0.00 0.00 42.39 3.73
2822 5319 5.935206 TCTTATATTTCCTTGTGTGCAACGA 59.065 36.000 0.00 0.00 42.39 3.85
2823 5320 6.176975 TCTTATATTTCCTTGTGTGCAACG 57.823 37.500 0.00 0.00 42.39 4.10
2824 5321 6.030228 GCTCTTATATTTCCTTGTGTGCAAC 58.970 40.000 0.00 0.00 37.35 4.17
2825 5322 5.945784 AGCTCTTATATTTCCTTGTGTGCAA 59.054 36.000 0.00 0.00 0.00 4.08
2826 5323 5.500234 AGCTCTTATATTTCCTTGTGTGCA 58.500 37.500 0.00 0.00 0.00 4.57
2827 5324 5.008118 GGAGCTCTTATATTTCCTTGTGTGC 59.992 44.000 14.64 0.00 0.00 4.57
2828 5325 5.529060 GGGAGCTCTTATATTTCCTTGTGTG 59.471 44.000 14.64 0.00 0.00 3.82
2829 5326 5.191722 TGGGAGCTCTTATATTTCCTTGTGT 59.808 40.000 14.64 0.00 0.00 3.72
2830 5327 5.684704 TGGGAGCTCTTATATTTCCTTGTG 58.315 41.667 14.64 0.00 0.00 3.33
2831 5328 5.975988 TGGGAGCTCTTATATTTCCTTGT 57.024 39.130 14.64 0.00 0.00 3.16
2832 5329 5.767168 CCTTGGGAGCTCTTATATTTCCTTG 59.233 44.000 14.64 1.31 0.00 3.61
2833 5330 5.672194 TCCTTGGGAGCTCTTATATTTCCTT 59.328 40.000 14.64 0.00 0.00 3.36
2834 5331 5.227593 TCCTTGGGAGCTCTTATATTTCCT 58.772 41.667 14.64 0.00 0.00 3.36
2835 5332 5.568620 TCCTTGGGAGCTCTTATATTTCC 57.431 43.478 14.64 3.98 0.00 3.13
2838 5335 9.338968 TGTATTATCCTTGGGAGCTCTTATATT 57.661 33.333 14.64 0.00 34.05 1.28
2839 5336 8.917414 TGTATTATCCTTGGGAGCTCTTATAT 57.083 34.615 14.64 3.21 34.05 0.86
2840 5337 8.736097 TTGTATTATCCTTGGGAGCTCTTATA 57.264 34.615 14.64 0.59 34.05 0.98
2841 5338 7.256835 CCTTGTATTATCCTTGGGAGCTCTTAT 60.257 40.741 14.64 1.50 34.05 1.73
2842 5339 6.043243 CCTTGTATTATCCTTGGGAGCTCTTA 59.957 42.308 14.64 0.00 34.05 2.10
2843 5340 5.163152 CCTTGTATTATCCTTGGGAGCTCTT 60.163 44.000 14.64 0.00 34.05 2.85
2844 5341 4.349342 CCTTGTATTATCCTTGGGAGCTCT 59.651 45.833 14.64 0.00 34.05 4.09
2845 5342 4.348168 TCCTTGTATTATCCTTGGGAGCTC 59.652 45.833 4.71 4.71 34.05 4.09
2846 5343 4.307259 TCCTTGTATTATCCTTGGGAGCT 58.693 43.478 0.00 0.00 34.05 4.09
2847 5344 4.706842 TCCTTGTATTATCCTTGGGAGC 57.293 45.455 0.00 0.00 34.05 4.70
2848 5345 7.231519 GGATTTTCCTTGTATTATCCTTGGGAG 59.768 40.741 0.00 0.00 31.49 4.30
2849 5346 7.066781 GGATTTTCCTTGTATTATCCTTGGGA 58.933 38.462 0.00 0.00 32.21 4.37
2850 5347 6.838612 TGGATTTTCCTTGTATTATCCTTGGG 59.161 38.462 0.00 0.00 37.46 4.12
2851 5348 7.561356 ACTGGATTTTCCTTGTATTATCCTTGG 59.439 37.037 0.00 0.00 37.46 3.61
2852 5349 8.525290 ACTGGATTTTCCTTGTATTATCCTTG 57.475 34.615 0.00 0.00 37.46 3.61
2857 5354 9.762381 TGGTTTACTGGATTTTCCTTGTATTAT 57.238 29.630 0.00 0.00 37.46 1.28
2858 5355 9.762381 ATGGTTTACTGGATTTTCCTTGTATTA 57.238 29.630 0.00 0.00 37.46 0.98
2859 5356 8.664669 ATGGTTTACTGGATTTTCCTTGTATT 57.335 30.769 0.00 0.00 37.46 1.89
2860 5357 8.116026 AGATGGTTTACTGGATTTTCCTTGTAT 58.884 33.333 0.00 0.00 37.46 2.29
2861 5358 7.393234 CAGATGGTTTACTGGATTTTCCTTGTA 59.607 37.037 0.00 0.00 37.46 2.41
2862 5359 6.209391 CAGATGGTTTACTGGATTTTCCTTGT 59.791 38.462 0.00 0.00 37.46 3.16
2863 5360 6.624423 CAGATGGTTTACTGGATTTTCCTTG 58.376 40.000 0.00 0.00 37.46 3.61
2864 5361 6.840780 CAGATGGTTTACTGGATTTTCCTT 57.159 37.500 0.00 0.00 37.46 3.36
3034 5532 9.612066 AATGGATTGTTGTGAACTTGTAATTTT 57.388 25.926 0.00 0.00 0.00 1.82
3035 5533 9.612066 AAATGGATTGTTGTGAACTTGTAATTT 57.388 25.926 0.00 0.00 0.00 1.82
3037 5535 8.420222 TGAAATGGATTGTTGTGAACTTGTAAT 58.580 29.630 0.00 0.00 0.00 1.89
3047 5545 4.152759 GCACCAATGAAATGGATTGTTGTG 59.847 41.667 0.00 0.00 43.54 3.33
3066 5566 4.220602 AGGAAATGAAATGTTGGTAGCACC 59.779 41.667 0.00 0.00 39.22 5.01
3082 5582 1.485066 ACCCGCTGGTACTAGGAAATG 59.515 52.381 8.46 0.00 45.45 2.32
3083 5583 1.875488 ACCCGCTGGTACTAGGAAAT 58.125 50.000 8.46 0.00 45.45 2.17
3104 5604 2.602746 TTGGTGGCGGCTACCATAGC 62.603 60.000 34.23 10.51 46.81 2.97
3129 5629 4.329545 TTCTGCCACGACCTGCCC 62.330 66.667 0.00 0.00 0.00 5.36
3231 7947 6.487331 TGTAGATGATCATGCATTGCAACATA 59.513 34.615 16.46 1.84 43.62 2.29
3232 7948 4.937201 AGATGATCATGCATTGCAACAT 57.063 36.364 16.46 16.95 43.62 2.71
3244 7960 7.876936 ATTGTCTGCTTTTGTAGATGATCAT 57.123 32.000 8.25 8.25 42.84 2.45
3263 7981 6.259550 ACTCCATTTGAGCTAACAATTGTC 57.740 37.500 12.39 0.00 45.61 3.18
3266 7984 8.806146 ACATTTACTCCATTTGAGCTAACAATT 58.194 29.630 0.00 0.00 45.61 2.32
3268 7986 7.446931 TGACATTTACTCCATTTGAGCTAACAA 59.553 33.333 0.00 0.00 45.61 2.83
3269 7987 6.939730 TGACATTTACTCCATTTGAGCTAACA 59.060 34.615 0.00 0.00 45.61 2.41
3281 7999 6.413892 TGCAACATAGATGACATTTACTCCA 58.586 36.000 0.00 0.00 0.00 3.86
3282 8000 6.925610 TGCAACATAGATGACATTTACTCC 57.074 37.500 0.00 0.00 0.00 3.85
3285 8003 6.974048 TGCATTGCAACATAGATGACATTTAC 59.026 34.615 9.33 0.00 34.76 2.01
3288 8006 5.105675 TGTGCATTGCAACATAGATGACATT 60.106 36.000 13.94 0.00 41.47 2.71
3289 8007 4.399934 TGTGCATTGCAACATAGATGACAT 59.600 37.500 13.94 0.00 41.47 3.06
3291 8009 4.359971 TGTGCATTGCAACATAGATGAC 57.640 40.909 13.94 0.00 41.47 3.06
3292 8010 5.388408 TTTGTGCATTGCAACATAGATGA 57.612 34.783 13.94 0.00 41.47 2.92
3293 8011 5.808030 TGATTTGTGCATTGCAACATAGATG 59.192 36.000 13.94 0.00 41.47 2.90
3294 8012 5.968254 TGATTTGTGCATTGCAACATAGAT 58.032 33.333 13.94 8.37 41.47 1.98
3295 8013 5.388408 TGATTTGTGCATTGCAACATAGA 57.612 34.783 13.94 4.46 41.47 1.98
3306 8025 7.643569 TTACTCCAACATATGATTTGTGCAT 57.356 32.000 10.38 0.00 0.00 3.96
3309 8028 8.611757 TCGATTTACTCCAACATATGATTTGTG 58.388 33.333 10.38 2.88 0.00 3.33
3310 8029 8.731275 TCGATTTACTCCAACATATGATTTGT 57.269 30.769 10.38 4.34 0.00 2.83
3311 8030 9.603298 CATCGATTTACTCCAACATATGATTTG 57.397 33.333 10.38 4.40 0.00 2.32
3312 8031 8.292448 GCATCGATTTACTCCAACATATGATTT 58.708 33.333 10.38 0.00 0.00 2.17
3313 8032 7.663081 AGCATCGATTTACTCCAACATATGATT 59.337 33.333 10.38 0.00 0.00 2.57
3314 8033 7.164122 AGCATCGATTTACTCCAACATATGAT 58.836 34.615 10.38 0.00 0.00 2.45
3315 8034 6.524734 AGCATCGATTTACTCCAACATATGA 58.475 36.000 10.38 0.00 0.00 2.15
3316 8035 6.791887 AGCATCGATTTACTCCAACATATG 57.208 37.500 0.00 0.00 0.00 1.78
3317 8036 7.671302 ACTAGCATCGATTTACTCCAACATAT 58.329 34.615 0.00 0.00 0.00 1.78
3318 8037 7.050970 ACTAGCATCGATTTACTCCAACATA 57.949 36.000 0.00 0.00 0.00 2.29
3319 8038 5.918608 ACTAGCATCGATTTACTCCAACAT 58.081 37.500 0.00 0.00 0.00 2.71
3334 8053 6.018669 CGGAGGTTAGAAATCAAACTAGCATC 60.019 42.308 0.00 0.00 32.78 3.91
3365 8084 0.387202 CACCCAAACGGCATTGTTCA 59.613 50.000 0.00 0.00 33.26 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.