Multiple sequence alignment - TraesCS3B01G070400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G070400 chr3B 100.000 3218 0 0 1 3218 42370970 42367753 0.000000e+00 5943.0
1 TraesCS3B01G070400 chr3A 88.710 2542 147 61 404 2879 34250118 34247651 0.000000e+00 2976.0
2 TraesCS3B01G070400 chr3A 89.086 2089 111 47 404 2457 34052314 34050308 0.000000e+00 2486.0
3 TraesCS3B01G070400 chr3A 89.149 599 30 14 2314 2879 34050452 34049856 0.000000e+00 713.0
4 TraesCS3B01G070400 chr3A 91.573 356 23 5 2865 3218 34042323 34041973 4.830000e-133 484.0
5 TraesCS3B01G070400 chr3A 90.730 356 26 5 2865 3218 34144159 34143809 4.860000e-128 468.0
6 TraesCS3B01G070400 chr3A 90.935 353 25 5 2868 3218 34240304 34239957 4.860000e-128 468.0
7 TraesCS3B01G070400 chr3A 91.667 144 10 1 404 545 34250341 34250198 7.040000e-47 198.0
8 TraesCS3B01G070400 chr3A 90.972 144 11 1 404 545 34052536 34052393 3.280000e-45 193.0
9 TraesCS3B01G070400 chr3D 90.749 1989 121 29 404 2373 24503246 24501302 0.000000e+00 2595.0
10 TraesCS3B01G070400 chr3D 91.337 1316 72 19 1579 2866 24335779 24334478 0.000000e+00 1760.0
11 TraesCS3B01G070400 chr3D 91.261 1316 73 19 1579 2866 24385954 24384653 0.000000e+00 1755.0
12 TraesCS3B01G070400 chr3D 91.179 1315 75 18 1579 2866 24288491 24287191 0.000000e+00 1748.0
13 TraesCS3B01G070400 chr3D 93.659 410 22 3 2458 2866 24499715 24499309 7.630000e-171 610.0
14 TraesCS3B01G070400 chr3D 93.566 373 21 1 1178 1550 24288856 24288487 1.300000e-153 553.0
15 TraesCS3B01G070400 chr3D 93.566 373 21 1 1178 1550 24386319 24385950 1.300000e-153 553.0
16 TraesCS3B01G070400 chr3D 93.029 373 23 1 1178 1550 24336144 24335775 2.820000e-150 542.0
17 TraesCS3B01G070400 chr3D 90.678 354 27 2 2865 3218 24498120 24497773 1.750000e-127 466.0
18 TraesCS3B01G070400 chr3D 89.306 346 21 3 2873 3218 24275505 24275176 1.380000e-113 420.0
19 TraesCS3B01G070400 chr3D 89.080 348 20 4 2873 3218 24321595 24321264 1.790000e-112 416.0
20 TraesCS3B01G070400 chr3D 89.017 346 22 3 2873 3218 24371014 24370685 6.420000e-112 414.0
21 TraesCS3B01G070400 chr3D 89.804 255 14 4 404 646 24336395 24336141 1.860000e-82 316.0
22 TraesCS3B01G070400 chr3D 89.804 255 14 4 404 646 24386570 24386316 1.860000e-82 316.0
23 TraesCS3B01G070400 chr3D 88.976 254 17 5 404 646 24289106 24288853 1.450000e-78 303.0
24 TraesCS3B01G070400 chr7B 86.182 275 27 8 2905 3174 373654289 373654021 1.460000e-73 287.0
25 TraesCS3B01G070400 chr2D 85.766 274 29 7 2907 3175 347389565 347389297 6.800000e-72 281.0
26 TraesCS3B01G070400 chr4D 77.439 328 56 9 956 1272 487230160 487229840 2.550000e-41 180.0
27 TraesCS3B01G070400 chr4D 82.673 202 20 9 1377 1572 487290677 487290485 7.140000e-37 165.0
28 TraesCS3B01G070400 chr4D 92.857 84 4 2 2458 2540 495094093 495094175 1.570000e-23 121.0
29 TraesCS3B01G070400 chr4D 84.146 82 13 0 2129 2210 487119501 487119420 2.660000e-11 80.5
30 TraesCS3B01G070400 chr4D 85.246 61 6 3 757 814 487346070 487346010 3.470000e-05 60.2
31 TraesCS3B01G070400 chr5A 83.415 205 19 9 1374 1572 668271688 668271493 3.300000e-40 176.0
32 TraesCS3B01G070400 chr5A 88.028 142 9 5 1432 1572 668226230 668226096 9.240000e-36 161.0
33 TraesCS3B01G070400 chr5A 76.667 300 43 12 1001 1282 668580682 668580392 1.200000e-29 141.0
34 TraesCS3B01G070400 chr5A 75.517 290 44 13 1001 1272 668226727 668226447 2.030000e-22 117.0
35 TraesCS3B01G070400 chr5A 82.677 127 18 2 1086 1212 668271997 668271875 3.390000e-20 110.0
36 TraesCS3B01G070400 chr5A 96.875 32 0 1 757 787 668227083 668227052 6.000000e-03 52.8
37 TraesCS3B01G070400 chr5A 83.333 60 7 3 757 813 668273955 668273896 6.000000e-03 52.8
38 TraesCS3B01G070400 chr5A 96.875 32 0 1 757 787 668766737 668766768 6.000000e-03 52.8
39 TraesCS3B01G070400 chr1A 86.207 116 16 0 46 161 27747074 27746959 3.370000e-25 126.0
40 TraesCS3B01G070400 chr6B 91.667 84 5 2 2458 2539 80168058 80167975 7.300000e-22 115.0
41 TraesCS3B01G070400 chr6B 89.535 86 7 2 2458 2542 12974330 12974246 1.220000e-19 108.0
42 TraesCS3B01G070400 chr6B 77.869 122 21 6 46 164 592448919 592448801 1.600000e-08 71.3
43 TraesCS3B01G070400 chr4B 83.333 60 7 3 757 814 622480096 622480038 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G070400 chr3B 42367753 42370970 3217 True 5943.000000 5943 100.000000 1 3218 1 chr3B.!!$R1 3217
1 TraesCS3B01G070400 chr3A 34247651 34250341 2690 True 1587.000000 2976 90.188500 404 2879 2 chr3A.!!$R5 2475
2 TraesCS3B01G070400 chr3A 34049856 34052536 2680 True 1130.666667 2486 89.735667 404 2879 3 chr3A.!!$R4 2475
3 TraesCS3B01G070400 chr3D 24497773 24503246 5473 True 1223.666667 2595 91.695333 404 3218 3 chr3D.!!$R7 2814
4 TraesCS3B01G070400 chr3D 24384653 24386570 1917 True 874.666667 1755 91.543667 404 2866 3 chr3D.!!$R6 2462
5 TraesCS3B01G070400 chr3D 24334478 24336395 1917 True 872.666667 1760 91.390000 404 2866 3 chr3D.!!$R5 2462
6 TraesCS3B01G070400 chr3D 24287191 24289106 1915 True 868.000000 1748 91.240333 404 2866 3 chr3D.!!$R4 2462

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 308 0.034477 CCCCACAACTAAAGCCCGAT 60.034 55.0 0.0 0.00 0.0 4.18 F
739 987 0.109412 AACTGCCAGCGTACGTAGAC 60.109 55.0 17.9 5.39 0.0 2.59 F
1634 1933 0.249868 CTGCGAGTTGTGGACCTTCA 60.250 55.0 0.0 0.00 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 2259 0.035317 ACGCACTGCTTGATCTCCAA 59.965 50.000 0.0 0.0 0.0 3.53 R
2124 2428 0.252103 TCTTCCCTTCCGCCTACACT 60.252 55.000 0.0 0.0 0.0 3.55 R
2744 4567 1.003233 CGGGTTTTAGGTGCCTCTCTT 59.997 52.381 0.0 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.660501 CATGCCAAATATGCAGCTCAT 57.339 42.857 0.00 4.45 42.92 2.90
27 28 4.776795 CATGCCAAATATGCAGCTCATA 57.223 40.909 7.89 7.89 42.92 2.15
28 29 4.482386 CATGCCAAATATGCAGCTCATAC 58.518 43.478 7.69 0.00 42.92 2.39
29 30 2.549329 TGCCAAATATGCAGCTCATACG 59.451 45.455 7.69 0.00 40.22 3.06
30 31 2.666619 GCCAAATATGCAGCTCATACGC 60.667 50.000 7.69 0.00 40.22 4.42
31 32 2.549329 CCAAATATGCAGCTCATACGCA 59.451 45.455 0.00 0.00 40.22 5.24
32 33 3.548587 CAAATATGCAGCTCATACGCAC 58.451 45.455 0.00 0.00 40.22 5.34
33 34 2.531522 ATATGCAGCTCATACGCACA 57.468 45.000 0.00 0.00 40.22 4.57
34 35 1.570813 TATGCAGCTCATACGCACAC 58.429 50.000 0.00 0.00 38.73 3.82
35 36 0.391528 ATGCAGCTCATACGCACACA 60.392 50.000 0.00 0.00 38.73 3.72
36 37 0.391528 TGCAGCTCATACGCACACAT 60.392 50.000 0.00 0.00 0.00 3.21
37 38 1.134848 TGCAGCTCATACGCACACATA 60.135 47.619 0.00 0.00 0.00 2.29
38 39 2.138320 GCAGCTCATACGCACACATAT 58.862 47.619 0.00 0.00 0.00 1.78
39 40 2.096565 GCAGCTCATACGCACACATATG 60.097 50.000 0.00 0.00 0.00 1.78
40 41 3.126073 CAGCTCATACGCACACATATGT 58.874 45.455 1.41 1.41 40.80 2.29
41 42 4.298332 CAGCTCATACGCACACATATGTA 58.702 43.478 8.32 0.00 36.72 2.29
42 43 4.148871 CAGCTCATACGCACACATATGTAC 59.851 45.833 8.32 0.36 36.72 2.90
43 44 4.048504 GCTCATACGCACACATATGTACA 58.951 43.478 8.32 0.00 36.72 2.90
44 45 4.506288 GCTCATACGCACACATATGTACAA 59.494 41.667 8.32 0.00 36.72 2.41
45 46 5.006261 GCTCATACGCACACATATGTACAAA 59.994 40.000 8.32 0.00 36.72 2.83
46 47 6.582437 TCATACGCACACATATGTACAAAG 57.418 37.500 8.32 0.00 36.72 2.77
47 48 5.522097 TCATACGCACACATATGTACAAAGG 59.478 40.000 8.32 0.00 36.72 3.11
48 49 2.418628 ACGCACACATATGTACAAAGGC 59.581 45.455 8.32 5.44 36.72 4.35
49 50 2.418280 CGCACACATATGTACAAAGGCA 59.582 45.455 8.32 0.00 36.72 4.75
50 51 3.727673 CGCACACATATGTACAAAGGCAC 60.728 47.826 8.32 0.00 36.72 5.01
51 52 3.427503 GCACACATATGTACAAAGGCACC 60.428 47.826 8.32 0.00 36.72 5.01
52 53 3.006940 ACACATATGTACAAAGGCACCG 58.993 45.455 8.32 0.00 37.26 4.94
53 54 3.006940 CACATATGTACAAAGGCACCGT 58.993 45.455 8.32 0.00 0.00 4.83
54 55 4.185394 CACATATGTACAAAGGCACCGTA 58.815 43.478 8.32 0.00 0.00 4.02
55 56 4.814234 CACATATGTACAAAGGCACCGTAT 59.186 41.667 8.32 0.00 0.00 3.06
56 57 5.295787 CACATATGTACAAAGGCACCGTATT 59.704 40.000 8.32 0.00 0.00 1.89
57 58 5.883673 ACATATGTACAAAGGCACCGTATTT 59.116 36.000 6.56 0.00 0.00 1.40
58 59 7.011576 CACATATGTACAAAGGCACCGTATTTA 59.988 37.037 8.32 0.00 0.00 1.40
59 60 7.553402 ACATATGTACAAAGGCACCGTATTTAA 59.447 33.333 6.56 0.00 0.00 1.52
60 61 6.821031 ATGTACAAAGGCACCGTATTTAAA 57.179 33.333 0.00 0.00 0.00 1.52
61 62 5.999721 TGTACAAAGGCACCGTATTTAAAC 58.000 37.500 0.00 0.00 0.00 2.01
62 63 4.149910 ACAAAGGCACCGTATTTAAACG 57.850 40.909 0.00 0.00 42.49 3.60
63 64 2.905959 AAGGCACCGTATTTAAACGC 57.094 45.000 0.00 0.00 41.51 4.84
64 65 2.103537 AGGCACCGTATTTAAACGCT 57.896 45.000 0.00 0.00 41.51 5.07
65 66 2.004733 AGGCACCGTATTTAAACGCTC 58.995 47.619 0.00 0.00 41.51 5.03
66 67 1.267186 GGCACCGTATTTAAACGCTCG 60.267 52.381 0.00 0.00 41.51 5.03
67 68 1.267186 GCACCGTATTTAAACGCTCGG 60.267 52.381 15.57 15.57 41.51 4.63
68 69 2.261345 CACCGTATTTAAACGCTCGGA 58.739 47.619 20.72 0.00 41.51 4.55
69 70 2.028404 CACCGTATTTAAACGCTCGGAC 59.972 50.000 20.72 1.02 41.51 4.79
70 71 2.261345 CCGTATTTAAACGCTCGGACA 58.739 47.619 13.30 0.00 41.51 4.02
71 72 2.667481 CCGTATTTAAACGCTCGGACAA 59.333 45.455 13.30 0.00 41.51 3.18
72 73 3.241868 CCGTATTTAAACGCTCGGACAAG 60.242 47.826 13.30 0.00 41.51 3.16
73 74 3.365820 CGTATTTAAACGCTCGGACAAGT 59.634 43.478 0.00 0.00 35.87 3.16
74 75 4.143263 CGTATTTAAACGCTCGGACAAGTT 60.143 41.667 0.00 0.00 35.87 2.66
75 76 5.060816 CGTATTTAAACGCTCGGACAAGTTA 59.939 40.000 0.00 0.00 35.87 2.24
76 77 6.237648 CGTATTTAAACGCTCGGACAAGTTAT 60.238 38.462 0.00 0.00 35.87 1.89
77 78 7.044117 CGTATTTAAACGCTCGGACAAGTTATA 60.044 37.037 0.00 0.00 35.87 0.98
78 79 6.636666 TTTAAACGCTCGGACAAGTTATAG 57.363 37.500 0.00 0.00 0.00 1.31
79 80 2.205307 ACGCTCGGACAAGTTATAGC 57.795 50.000 0.00 0.00 0.00 2.97
80 81 1.475280 ACGCTCGGACAAGTTATAGCA 59.525 47.619 0.00 0.00 0.00 3.49
81 82 2.100916 ACGCTCGGACAAGTTATAGCAT 59.899 45.455 0.00 0.00 0.00 3.79
82 83 2.726760 CGCTCGGACAAGTTATAGCATC 59.273 50.000 0.00 0.00 0.00 3.91
83 84 3.551046 CGCTCGGACAAGTTATAGCATCT 60.551 47.826 0.00 0.00 0.00 2.90
84 85 3.738282 GCTCGGACAAGTTATAGCATCTG 59.262 47.826 0.00 0.00 0.00 2.90
85 86 4.737946 GCTCGGACAAGTTATAGCATCTGT 60.738 45.833 0.00 0.00 0.00 3.41
86 87 5.339008 TCGGACAAGTTATAGCATCTGTT 57.661 39.130 0.00 0.00 0.00 3.16
87 88 5.730550 TCGGACAAGTTATAGCATCTGTTT 58.269 37.500 0.00 0.00 0.00 2.83
88 89 6.170506 TCGGACAAGTTATAGCATCTGTTTT 58.829 36.000 0.00 0.00 0.00 2.43
89 90 7.324935 TCGGACAAGTTATAGCATCTGTTTTA 58.675 34.615 0.00 0.00 0.00 1.52
90 91 7.985184 TCGGACAAGTTATAGCATCTGTTTTAT 59.015 33.333 0.00 0.00 0.00 1.40
91 92 8.064222 CGGACAAGTTATAGCATCTGTTTTATG 58.936 37.037 0.00 0.00 0.00 1.90
92 93 8.893727 GGACAAGTTATAGCATCTGTTTTATGT 58.106 33.333 0.00 0.00 0.00 2.29
132 133 5.923733 ACCAAAGTGACCATAACAAACAA 57.076 34.783 0.00 0.00 0.00 2.83
133 134 5.901552 ACCAAAGTGACCATAACAAACAAG 58.098 37.500 0.00 0.00 0.00 3.16
134 135 5.420739 ACCAAAGTGACCATAACAAACAAGT 59.579 36.000 0.00 0.00 0.00 3.16
135 136 6.071051 ACCAAAGTGACCATAACAAACAAGTT 60.071 34.615 0.00 0.00 35.55 2.66
136 137 7.122948 ACCAAAGTGACCATAACAAACAAGTTA 59.877 33.333 0.00 0.00 38.25 2.24
137 138 7.976734 CCAAAGTGACCATAACAAACAAGTTAA 59.023 33.333 0.00 0.00 37.50 2.01
138 139 9.019764 CAAAGTGACCATAACAAACAAGTTAAG 57.980 33.333 0.00 0.00 37.50 1.85
139 140 7.272037 AGTGACCATAACAAACAAGTTAAGG 57.728 36.000 6.58 6.58 44.35 2.69
140 141 5.918576 GTGACCATAACAAACAAGTTAAGGC 59.081 40.000 7.73 3.21 43.24 4.35
141 142 5.594725 TGACCATAACAAACAAGTTAAGGCA 59.405 36.000 7.73 5.19 43.24 4.75
142 143 5.838529 ACCATAACAAACAAGTTAAGGCAC 58.161 37.500 7.73 0.00 43.24 5.01
143 144 5.221362 ACCATAACAAACAAGTTAAGGCACC 60.221 40.000 7.73 0.00 43.24 5.01
144 145 3.812156 AACAAACAAGTTAAGGCACCC 57.188 42.857 0.00 0.00 0.00 4.61
145 146 2.741145 ACAAACAAGTTAAGGCACCCA 58.259 42.857 0.00 0.00 0.00 4.51
146 147 3.304829 ACAAACAAGTTAAGGCACCCAT 58.695 40.909 0.00 0.00 0.00 4.00
147 148 3.069443 ACAAACAAGTTAAGGCACCCATG 59.931 43.478 0.00 0.00 0.00 3.66
148 149 1.923356 ACAAGTTAAGGCACCCATGG 58.077 50.000 4.14 4.14 0.00 3.66
149 150 1.146982 ACAAGTTAAGGCACCCATGGT 59.853 47.619 11.73 0.00 35.62 3.55
150 151 2.377193 ACAAGTTAAGGCACCCATGGTA 59.623 45.455 11.73 0.00 32.11 3.25
151 152 3.011257 ACAAGTTAAGGCACCCATGGTAT 59.989 43.478 11.73 0.00 32.11 2.73
152 153 4.228666 ACAAGTTAAGGCACCCATGGTATA 59.771 41.667 11.73 0.00 32.11 1.47
153 154 5.103686 ACAAGTTAAGGCACCCATGGTATAT 60.104 40.000 11.73 0.00 32.11 0.86
154 155 5.663158 AGTTAAGGCACCCATGGTATATT 57.337 39.130 11.73 1.50 32.11 1.28
155 156 6.025793 AGTTAAGGCACCCATGGTATATTT 57.974 37.500 11.73 2.31 32.11 1.40
156 157 7.156694 AGTTAAGGCACCCATGGTATATTTA 57.843 36.000 11.73 1.33 32.11 1.40
157 158 7.588169 AGTTAAGGCACCCATGGTATATTTAA 58.412 34.615 11.73 7.34 32.11 1.52
158 159 7.504574 AGTTAAGGCACCCATGGTATATTTAAC 59.495 37.037 19.99 19.99 32.11 2.01
159 160 5.663158 AGGCACCCATGGTATATTTAACT 57.337 39.130 11.73 0.00 32.11 2.24
160 161 5.631119 AGGCACCCATGGTATATTTAACTC 58.369 41.667 11.73 0.00 32.11 3.01
161 162 4.454504 GGCACCCATGGTATATTTAACTCG 59.545 45.833 11.73 0.00 32.11 4.18
162 163 5.061179 GCACCCATGGTATATTTAACTCGT 58.939 41.667 11.73 0.00 32.11 4.18
163 164 5.529800 GCACCCATGGTATATTTAACTCGTT 59.470 40.000 11.73 0.00 32.11 3.85
164 165 6.512741 GCACCCATGGTATATTTAACTCGTTG 60.513 42.308 11.73 0.00 32.11 4.10
165 166 6.017440 CACCCATGGTATATTTAACTCGTTGG 60.017 42.308 11.73 0.00 32.11 3.77
166 167 6.059484 CCCATGGTATATTTAACTCGTTGGT 58.941 40.000 11.73 0.00 0.00 3.67
167 168 6.017440 CCCATGGTATATTTAACTCGTTGGTG 60.017 42.308 11.73 0.00 0.00 4.17
168 169 6.764085 CCATGGTATATTTAACTCGTTGGTGA 59.236 38.462 2.57 0.00 0.00 4.02
169 170 7.444183 CCATGGTATATTTAACTCGTTGGTGAT 59.556 37.037 2.57 0.00 0.00 3.06
170 171 9.483916 CATGGTATATTTAACTCGTTGGTGATA 57.516 33.333 0.00 0.00 0.00 2.15
177 178 7.972832 TTTAACTCGTTGGTGATATTTGTCT 57.027 32.000 0.00 0.00 0.00 3.41
178 179 7.972832 TTAACTCGTTGGTGATATTTGTCTT 57.027 32.000 0.00 0.00 0.00 3.01
179 180 6.877611 AACTCGTTGGTGATATTTGTCTTT 57.122 33.333 0.00 0.00 0.00 2.52
180 181 7.972832 AACTCGTTGGTGATATTTGTCTTTA 57.027 32.000 0.00 0.00 0.00 1.85
181 182 8.561738 AACTCGTTGGTGATATTTGTCTTTAT 57.438 30.769 0.00 0.00 0.00 1.40
182 183 8.561738 ACTCGTTGGTGATATTTGTCTTTATT 57.438 30.769 0.00 0.00 0.00 1.40
183 184 9.010029 ACTCGTTGGTGATATTTGTCTTTATTT 57.990 29.630 0.00 0.00 0.00 1.40
197 198 9.515020 TTTGTCTTTATTTACAAAGTTGAGCAG 57.485 29.630 0.00 0.00 39.88 4.24
198 199 8.445275 TGTCTTTATTTACAAAGTTGAGCAGA 57.555 30.769 0.00 0.00 36.94 4.26
199 200 8.342634 TGTCTTTATTTACAAAGTTGAGCAGAC 58.657 33.333 0.00 0.00 36.94 3.51
200 201 7.803659 GTCTTTATTTACAAAGTTGAGCAGACC 59.196 37.037 0.00 0.00 36.94 3.85
201 202 7.719633 TCTTTATTTACAAAGTTGAGCAGACCT 59.280 33.333 0.00 0.00 36.94 3.85
202 203 5.695851 ATTTACAAAGTTGAGCAGACCTG 57.304 39.130 0.00 0.00 0.00 4.00
212 213 2.656646 CAGACCTGCTACGTGCCA 59.343 61.111 0.00 0.00 42.00 4.92
213 214 1.005037 CAGACCTGCTACGTGCCAA 60.005 57.895 0.00 0.00 42.00 4.52
214 215 0.602638 CAGACCTGCTACGTGCCAAA 60.603 55.000 0.00 0.00 42.00 3.28
215 216 0.320771 AGACCTGCTACGTGCCAAAG 60.321 55.000 0.00 0.00 42.00 2.77
216 217 1.912371 GACCTGCTACGTGCCAAAGC 61.912 60.000 0.00 0.00 42.00 3.51
217 218 2.690778 CCTGCTACGTGCCAAAGCC 61.691 63.158 0.00 0.00 42.00 4.35
218 219 1.672356 CTGCTACGTGCCAAAGCCT 60.672 57.895 0.00 0.00 42.00 4.58
219 220 1.639298 CTGCTACGTGCCAAAGCCTC 61.639 60.000 0.00 0.00 42.00 4.70
220 221 2.399356 GCTACGTGCCAAAGCCTCC 61.399 63.158 0.00 0.00 38.69 4.30
221 222 1.003839 CTACGTGCCAAAGCCTCCA 60.004 57.895 0.00 0.00 38.69 3.86
222 223 1.298859 CTACGTGCCAAAGCCTCCAC 61.299 60.000 0.00 0.00 38.69 4.02
223 224 2.741486 TACGTGCCAAAGCCTCCACC 62.741 60.000 0.00 0.00 38.69 4.61
224 225 2.116125 GTGCCAAAGCCTCCACCT 59.884 61.111 0.00 0.00 38.69 4.00
225 226 1.973812 GTGCCAAAGCCTCCACCTC 60.974 63.158 0.00 0.00 38.69 3.85
226 227 2.361737 GCCAAAGCCTCCACCTCC 60.362 66.667 0.00 0.00 0.00 4.30
227 228 3.170362 CCAAAGCCTCCACCTCCA 58.830 61.111 0.00 0.00 0.00 3.86
228 229 1.460255 CCAAAGCCTCCACCTCCAA 59.540 57.895 0.00 0.00 0.00 3.53
229 230 0.895559 CCAAAGCCTCCACCTCCAAC 60.896 60.000 0.00 0.00 0.00 3.77
230 231 0.895559 CAAAGCCTCCACCTCCAACC 60.896 60.000 0.00 0.00 0.00 3.77
231 232 1.068352 AAAGCCTCCACCTCCAACCT 61.068 55.000 0.00 0.00 0.00 3.50
232 233 1.783250 AAGCCTCCACCTCCAACCTG 61.783 60.000 0.00 0.00 0.00 4.00
233 234 2.529744 GCCTCCACCTCCAACCTGT 61.530 63.158 0.00 0.00 0.00 4.00
234 235 1.679898 CCTCCACCTCCAACCTGTC 59.320 63.158 0.00 0.00 0.00 3.51
235 236 1.293498 CTCCACCTCCAACCTGTCG 59.707 63.158 0.00 0.00 0.00 4.35
236 237 1.458777 TCCACCTCCAACCTGTCGT 60.459 57.895 0.00 0.00 0.00 4.34
237 238 1.301716 CCACCTCCAACCTGTCGTG 60.302 63.158 0.00 0.00 0.00 4.35
238 239 1.961277 CACCTCCAACCTGTCGTGC 60.961 63.158 0.00 0.00 0.00 5.34
239 240 2.358737 CCTCCAACCTGTCGTGCC 60.359 66.667 0.00 0.00 0.00 5.01
240 241 2.358737 CTCCAACCTGTCGTGCCC 60.359 66.667 0.00 0.00 0.00 5.36
241 242 2.847234 TCCAACCTGTCGTGCCCT 60.847 61.111 0.00 0.00 0.00 5.19
242 243 2.358737 CCAACCTGTCGTGCCCTC 60.359 66.667 0.00 0.00 0.00 4.30
243 244 2.738521 CAACCTGTCGTGCCCTCG 60.739 66.667 0.00 0.00 0.00 4.63
244 245 3.231736 AACCTGTCGTGCCCTCGT 61.232 61.111 0.00 0.00 0.00 4.18
245 246 3.515316 AACCTGTCGTGCCCTCGTG 62.515 63.158 0.00 0.00 0.00 4.35
246 247 3.680786 CCTGTCGTGCCCTCGTGA 61.681 66.667 0.00 0.00 0.00 4.35
247 248 2.573869 CTGTCGTGCCCTCGTGAT 59.426 61.111 0.00 0.00 0.00 3.06
248 249 1.079819 CTGTCGTGCCCTCGTGATT 60.080 57.895 0.00 0.00 0.00 2.57
249 250 0.670546 CTGTCGTGCCCTCGTGATTT 60.671 55.000 0.00 0.00 0.00 2.17
250 251 0.948623 TGTCGTGCCCTCGTGATTTG 60.949 55.000 0.00 0.00 0.00 2.32
251 252 2.032634 TCGTGCCCTCGTGATTTGC 61.033 57.895 0.00 0.00 0.00 3.68
252 253 2.034879 CGTGCCCTCGTGATTTGCT 61.035 57.895 0.00 0.00 0.00 3.91
253 254 1.503542 GTGCCCTCGTGATTTGCTG 59.496 57.895 0.00 0.00 0.00 4.41
254 255 2.334946 TGCCCTCGTGATTTGCTGC 61.335 57.895 0.00 0.00 0.00 5.25
255 256 2.334946 GCCCTCGTGATTTGCTGCA 61.335 57.895 0.00 0.00 0.00 4.41
256 257 1.798735 CCCTCGTGATTTGCTGCAG 59.201 57.895 10.11 10.11 0.00 4.41
257 258 0.957395 CCCTCGTGATTTGCTGCAGT 60.957 55.000 16.64 0.00 0.00 4.40
258 259 1.675714 CCCTCGTGATTTGCTGCAGTA 60.676 52.381 16.64 8.31 0.00 2.74
259 260 1.394917 CCTCGTGATTTGCTGCAGTAC 59.605 52.381 16.64 0.00 0.00 2.73
260 261 2.068519 CTCGTGATTTGCTGCAGTACA 58.931 47.619 16.64 3.93 0.00 2.90
261 262 2.674852 CTCGTGATTTGCTGCAGTACAT 59.325 45.455 16.64 9.65 0.00 2.29
262 263 2.672874 TCGTGATTTGCTGCAGTACATC 59.327 45.455 20.23 20.23 0.00 3.06
263 264 2.223112 CGTGATTTGCTGCAGTACATCC 60.223 50.000 22.94 15.15 0.00 3.51
264 265 2.098117 GTGATTTGCTGCAGTACATCCC 59.902 50.000 22.94 11.93 0.00 3.85
265 266 1.678101 GATTTGCTGCAGTACATCCCC 59.322 52.381 17.30 0.00 0.00 4.81
266 267 0.323360 TTTGCTGCAGTACATCCCCC 60.323 55.000 16.64 0.00 0.00 5.40
267 268 2.203070 GCTGCAGTACATCCCCCG 60.203 66.667 16.64 0.00 0.00 5.73
268 269 2.505982 CTGCAGTACATCCCCCGG 59.494 66.667 5.25 0.00 0.00 5.73
269 270 2.285069 TGCAGTACATCCCCCGGT 60.285 61.111 0.00 0.00 0.00 5.28
270 271 2.189521 GCAGTACATCCCCCGGTG 59.810 66.667 0.00 0.00 0.00 4.94
271 272 2.666098 GCAGTACATCCCCCGGTGT 61.666 63.158 0.00 0.00 0.00 4.16
272 273 1.220749 CAGTACATCCCCCGGTGTG 59.779 63.158 0.00 0.00 0.00 3.82
273 274 1.229400 AGTACATCCCCCGGTGTGT 60.229 57.895 0.00 1.98 0.00 3.72
274 275 1.078708 GTACATCCCCCGGTGTGTG 60.079 63.158 0.00 0.00 0.00 3.82
275 276 2.961893 TACATCCCCCGGTGTGTGC 61.962 63.158 0.00 0.00 0.00 4.57
280 281 4.343323 CCCCGGTGTGTGCCATGA 62.343 66.667 0.00 0.00 0.00 3.07
281 282 3.055719 CCCGGTGTGTGCCATGAC 61.056 66.667 0.00 0.00 0.00 3.06
282 283 2.281414 CCGGTGTGTGCCATGACA 60.281 61.111 0.00 0.00 0.00 3.58
283 284 2.327343 CCGGTGTGTGCCATGACAG 61.327 63.158 0.00 0.00 0.00 3.51
284 285 2.956987 GGTGTGTGCCATGACAGC 59.043 61.111 0.00 0.00 33.79 4.40
285 286 1.898094 GGTGTGTGCCATGACAGCA 60.898 57.895 8.98 0.77 39.77 4.41
290 291 2.282391 TGCCATGACAGCACACCC 60.282 61.111 0.00 0.00 34.69 4.61
291 292 3.064324 GCCATGACAGCACACCCC 61.064 66.667 0.00 0.00 0.00 4.95
292 293 2.435663 CCATGACAGCACACCCCA 59.564 61.111 0.00 0.00 0.00 4.96
293 294 1.973281 CCATGACAGCACACCCCAC 60.973 63.158 0.00 0.00 0.00 4.61
294 295 1.228215 CATGACAGCACACCCCACA 60.228 57.895 0.00 0.00 0.00 4.17
295 296 0.822944 CATGACAGCACACCCCACAA 60.823 55.000 0.00 0.00 0.00 3.33
296 297 0.823356 ATGACAGCACACCCCACAAC 60.823 55.000 0.00 0.00 0.00 3.32
297 298 1.152963 GACAGCACACCCCACAACT 60.153 57.895 0.00 0.00 0.00 3.16
298 299 0.107831 GACAGCACACCCCACAACTA 59.892 55.000 0.00 0.00 0.00 2.24
299 300 0.548989 ACAGCACACCCCACAACTAA 59.451 50.000 0.00 0.00 0.00 2.24
300 301 1.064314 ACAGCACACCCCACAACTAAA 60.064 47.619 0.00 0.00 0.00 1.85
301 302 1.608590 CAGCACACCCCACAACTAAAG 59.391 52.381 0.00 0.00 0.00 1.85
302 303 0.313987 GCACACCCCACAACTAAAGC 59.686 55.000 0.00 0.00 0.00 3.51
303 304 0.958822 CACACCCCACAACTAAAGCC 59.041 55.000 0.00 0.00 0.00 4.35
304 305 0.178973 ACACCCCACAACTAAAGCCC 60.179 55.000 0.00 0.00 0.00 5.19
305 306 1.074248 ACCCCACAACTAAAGCCCG 59.926 57.895 0.00 0.00 0.00 6.13
306 307 1.377229 CCCCACAACTAAAGCCCGA 59.623 57.895 0.00 0.00 0.00 5.14
307 308 0.034477 CCCCACAACTAAAGCCCGAT 60.034 55.000 0.00 0.00 0.00 4.18
308 309 1.379527 CCCACAACTAAAGCCCGATC 58.620 55.000 0.00 0.00 0.00 3.69
309 310 1.006832 CCACAACTAAAGCCCGATCG 58.993 55.000 8.51 8.51 0.00 3.69
310 311 1.404986 CCACAACTAAAGCCCGATCGA 60.405 52.381 18.66 0.00 0.00 3.59
311 312 2.550978 CACAACTAAAGCCCGATCGAT 58.449 47.619 18.66 0.00 0.00 3.59
312 313 3.491964 CCACAACTAAAGCCCGATCGATA 60.492 47.826 18.66 0.85 0.00 2.92
313 314 4.307432 CACAACTAAAGCCCGATCGATAT 58.693 43.478 18.66 0.00 0.00 1.63
314 315 5.466819 CACAACTAAAGCCCGATCGATATA 58.533 41.667 18.66 1.56 0.00 0.86
315 316 5.924254 CACAACTAAAGCCCGATCGATATAA 59.076 40.000 18.66 0.00 0.00 0.98
316 317 6.089551 CACAACTAAAGCCCGATCGATATAAG 59.910 42.308 18.66 9.02 0.00 1.73
317 318 4.745649 ACTAAAGCCCGATCGATATAAGC 58.254 43.478 18.66 9.17 0.00 3.09
318 319 3.678056 AAAGCCCGATCGATATAAGCA 57.322 42.857 18.66 0.00 0.00 3.91
319 320 3.678056 AAGCCCGATCGATATAAGCAA 57.322 42.857 18.66 0.00 0.00 3.91
320 321 3.678056 AGCCCGATCGATATAAGCAAA 57.322 42.857 18.66 0.00 0.00 3.68
321 322 4.207891 AGCCCGATCGATATAAGCAAAT 57.792 40.909 18.66 0.00 0.00 2.32
322 323 3.935203 AGCCCGATCGATATAAGCAAATG 59.065 43.478 18.66 0.00 0.00 2.32
323 324 3.684788 GCCCGATCGATATAAGCAAATGT 59.315 43.478 18.66 0.00 0.00 2.71
324 325 4.868171 GCCCGATCGATATAAGCAAATGTA 59.132 41.667 18.66 0.00 0.00 2.29
325 326 5.350365 GCCCGATCGATATAAGCAAATGTAA 59.650 40.000 18.66 0.00 0.00 2.41
326 327 6.455646 GCCCGATCGATATAAGCAAATGTAAG 60.456 42.308 18.66 0.00 0.00 2.34
327 328 6.811665 CCCGATCGATATAAGCAAATGTAAGA 59.188 38.462 18.66 0.00 0.00 2.10
328 329 7.009631 CCCGATCGATATAAGCAAATGTAAGAG 59.990 40.741 18.66 0.00 0.00 2.85
329 330 7.542477 CCGATCGATATAAGCAAATGTAAGAGT 59.458 37.037 18.66 0.00 0.00 3.24
330 331 9.556030 CGATCGATATAAGCAAATGTAAGAGTA 57.444 33.333 10.26 0.00 0.00 2.59
347 348 9.402320 TGTAAGAGTATCAGATGATATCTAGCC 57.598 37.037 3.98 0.00 39.03 3.93
348 349 9.627123 GTAAGAGTATCAGATGATATCTAGCCT 57.373 37.037 3.98 0.00 39.03 4.58
351 352 9.851686 AGAGTATCAGATGATATCTAGCCTTAG 57.148 37.037 3.98 0.00 39.03 2.18
352 353 8.995027 AGTATCAGATGATATCTAGCCTTAGG 57.005 38.462 3.98 0.00 39.03 2.69
353 354 6.729690 ATCAGATGATATCTAGCCTTAGGC 57.270 41.667 16.67 16.67 43.23 3.93
354 355 6.442961 ATCAGATGATATCTAGCCTTAGGCT 58.557 40.000 29.67 29.67 46.24 4.58
363 364 1.371558 GCCTTAGGCTATCCGGTGG 59.628 63.158 17.16 0.00 46.69 4.61
364 365 1.408453 GCCTTAGGCTATCCGGTGGT 61.408 60.000 17.16 0.00 46.69 4.16
365 366 2.005370 CCTTAGGCTATCCGGTGGTA 57.995 55.000 0.00 0.00 37.47 3.25
366 367 1.617357 CCTTAGGCTATCCGGTGGTAC 59.383 57.143 0.00 0.00 37.47 3.34
367 368 1.268899 CTTAGGCTATCCGGTGGTACG 59.731 57.143 0.00 0.00 37.47 3.67
368 369 0.473755 TAGGCTATCCGGTGGTACGA 59.526 55.000 0.00 0.00 37.47 3.43
369 370 0.822532 AGGCTATCCGGTGGTACGAG 60.823 60.000 0.00 0.00 37.47 4.18
370 371 1.007618 GCTATCCGGTGGTACGAGC 60.008 63.158 0.00 0.00 35.47 5.03
371 372 1.453762 GCTATCCGGTGGTACGAGCT 61.454 60.000 0.00 0.00 35.47 4.09
372 373 0.592148 CTATCCGGTGGTACGAGCTC 59.408 60.000 2.73 2.73 35.47 4.09
373 374 0.820891 TATCCGGTGGTACGAGCTCC 60.821 60.000 8.47 0.00 35.47 4.70
375 376 4.189188 CGGTGGTACGAGCTCCGG 62.189 72.222 8.47 0.00 45.55 5.14
376 377 4.509737 GGTGGTACGAGCTCCGGC 62.510 72.222 8.47 0.00 43.93 6.13
377 378 4.849329 GTGGTACGAGCTCCGGCG 62.849 72.222 8.47 0.00 44.37 6.46
379 380 4.253257 GGTACGAGCTCCGGCGAG 62.253 72.222 9.30 5.11 44.37 5.03
387 388 4.069232 CTCCGGCGAGCTGTTGGA 62.069 66.667 9.30 0.00 0.00 3.53
388 389 3.376935 CTCCGGCGAGCTGTTGGAT 62.377 63.158 9.30 0.00 0.00 3.41
389 390 2.892425 CCGGCGAGCTGTTGGATC 60.892 66.667 9.30 0.00 0.00 3.36
390 391 2.185350 CGGCGAGCTGTTGGATCT 59.815 61.111 0.00 0.00 0.00 2.75
391 392 2.169789 CGGCGAGCTGTTGGATCTG 61.170 63.158 0.00 0.00 0.00 2.90
392 393 1.219124 GGCGAGCTGTTGGATCTGA 59.781 57.895 0.00 0.00 0.00 3.27
393 394 0.391661 GGCGAGCTGTTGGATCTGAA 60.392 55.000 0.00 0.00 0.00 3.02
394 395 1.442769 GCGAGCTGTTGGATCTGAAA 58.557 50.000 0.00 0.00 0.00 2.69
395 396 2.012673 GCGAGCTGTTGGATCTGAAAT 58.987 47.619 0.00 0.00 0.00 2.17
396 397 2.031437 GCGAGCTGTTGGATCTGAAATC 59.969 50.000 0.00 0.00 0.00 2.17
397 398 2.611292 CGAGCTGTTGGATCTGAAATCC 59.389 50.000 0.00 0.00 38.66 3.01
398 399 3.614092 GAGCTGTTGGATCTGAAATCCA 58.386 45.455 2.63 2.63 45.71 3.41
407 408 3.308402 GGATCTGAAATCCAAGGGTCACA 60.308 47.826 0.00 0.00 38.09 3.58
429 430 6.256975 CACATGATATTTTCCCAGCAAATGTG 59.743 38.462 0.00 0.00 36.37 3.21
439 440 2.344535 GCAAATGTGGTGCTCCAGT 58.655 52.632 7.99 0.00 45.24 4.00
479 486 3.212685 TCTGCACACATGACAACATTCA 58.787 40.909 0.00 0.00 34.15 2.57
494 501 2.808543 ACATTCAACAGCTCTCGGTTTC 59.191 45.455 0.00 0.00 0.00 2.78
507 514 2.332654 GGTTTCGTTCCATGCGCCT 61.333 57.895 4.18 0.00 0.00 5.52
526 535 3.181521 GCCTGCACTGTTTTTGTTTGTTC 60.182 43.478 0.00 0.00 0.00 3.18
536 545 2.131776 TTGTTTGTTCCCAACGTCCT 57.868 45.000 0.00 0.00 0.00 3.85
579 820 1.153086 CCCCCTTGAATCTCGCAGG 60.153 63.158 0.00 0.00 0.00 4.85
580 821 1.626356 CCCCCTTGAATCTCGCAGGA 61.626 60.000 0.00 0.00 0.00 3.86
650 898 2.413765 GTCGCCAGGTCTCGATCC 59.586 66.667 0.00 0.00 37.06 3.36
652 900 2.835431 CGCCAGGTCTCGATCCCT 60.835 66.667 3.60 0.65 0.00 4.20
663 911 4.864334 GATCCCTGCCAGCCCGTG 62.864 72.222 0.00 0.00 0.00 4.94
691 939 4.022849 GCAAAACAGTAGCAGAATTCAGGT 60.023 41.667 8.44 8.05 0.00 4.00
706 954 3.313012 TCAGGTGATCGAAAACGACAT 57.687 42.857 0.00 0.00 0.00 3.06
728 976 4.944962 TGACGATAATTGAAACTGCCAG 57.055 40.909 0.00 0.00 0.00 4.85
739 987 0.109412 AACTGCCAGCGTACGTAGAC 60.109 55.000 17.90 5.39 0.00 2.59
744 992 3.512516 AGCGTACGTAGACGGGCC 61.513 66.667 17.90 0.00 43.13 5.80
745 993 3.512516 GCGTACGTAGACGGGCCT 61.513 66.667 17.90 0.00 43.13 5.19
789 1037 5.198965 AGATTCCATTCCATTCTCAGGTTG 58.801 41.667 0.00 0.00 0.00 3.77
799 1047 1.053835 TCTCAGGTTGTGTCTGCCCA 61.054 55.000 0.00 0.00 32.63 5.36
815 1063 0.321564 CCCATTTCTGCGTGACCAGA 60.322 55.000 0.55 0.55 39.94 3.86
819 1067 1.440060 TTCTGCGTGACCAGAACGT 59.560 52.632 10.94 0.00 44.49 3.99
841 1089 1.804601 GCCACGCCAAAACTAGTACT 58.195 50.000 0.00 0.00 0.00 2.73
842 1090 1.463444 GCCACGCCAAAACTAGTACTG 59.537 52.381 5.39 0.00 0.00 2.74
843 1091 2.762745 CCACGCCAAAACTAGTACTGT 58.237 47.619 5.39 0.00 0.00 3.55
905 1153 0.934436 CGCTTGGGTTTGTTGCTTCG 60.934 55.000 0.00 0.00 0.00 3.79
1050 1325 2.102438 CGAGCTCATGCCGCTTCAA 61.102 57.895 15.40 0.00 37.96 2.69
1079 1354 4.752879 GCCGGCGCTGACTTACCA 62.753 66.667 20.25 0.00 0.00 3.25
1090 1365 1.298859 GACTTACCAGGGCAGCAACG 61.299 60.000 0.00 0.00 0.00 4.10
1152 1430 4.074526 TGCACTGCCGAGGAGAGC 62.075 66.667 0.00 7.57 0.00 4.09
1283 1582 1.995626 GCAACCCCTGGAGGAGCTA 60.996 63.158 8.04 0.00 38.24 3.32
1406 1705 3.986116 GAGGGGACGGGGAGAGCTT 62.986 68.421 0.00 0.00 0.00 3.74
1430 1729 2.439156 GAGAAGCATGCCGGCCTT 60.439 61.111 26.77 20.29 0.00 4.35
1590 1889 2.822255 TGCCGCATCGCCCTTAAC 60.822 61.111 0.00 0.00 0.00 2.01
1593 1892 1.654023 GCCGCATCGCCCTTAACTTT 61.654 55.000 0.00 0.00 0.00 2.66
1604 1903 5.981315 TCGCCCTTAACTTTTGTATATCGAG 59.019 40.000 0.00 0.00 0.00 4.04
1615 1914 7.378995 ACTTTTGTATATCGAGTTATCTGCGAC 59.621 37.037 0.00 0.00 36.83 5.19
1616 1915 6.555812 TTGTATATCGAGTTATCTGCGACT 57.444 37.500 0.00 0.00 36.83 4.18
1617 1916 5.928153 TGTATATCGAGTTATCTGCGACTG 58.072 41.667 0.00 0.00 36.83 3.51
1618 1917 2.126914 ATCGAGTTATCTGCGACTGC 57.873 50.000 0.00 0.00 43.20 4.40
1631 1930 1.367840 GACTGCGAGTTGTGGACCT 59.632 57.895 0.00 0.00 0.00 3.85
1632 1931 0.249911 GACTGCGAGTTGTGGACCTT 60.250 55.000 0.00 0.00 0.00 3.50
1633 1932 0.249911 ACTGCGAGTTGTGGACCTTC 60.250 55.000 0.00 0.00 0.00 3.46
1634 1933 0.249868 CTGCGAGTTGTGGACCTTCA 60.250 55.000 0.00 0.00 0.00 3.02
1642 1941 6.456988 GCGAGTTGTGGACCTTCATTAATTAG 60.457 42.308 0.00 0.00 0.00 1.73
1644 1943 6.485171 AGTTGTGGACCTTCATTAATTAGCT 58.515 36.000 0.00 0.00 0.00 3.32
1648 1947 6.719370 TGTGGACCTTCATTAATTAGCTTGTT 59.281 34.615 0.00 0.00 0.00 2.83
1690 1989 1.688735 TCGAACTGCAGATGGATAGGG 59.311 52.381 23.35 0.00 0.00 3.53
1759 2058 2.238898 CGGATTAAAACCCTGGAGGAGT 59.761 50.000 0.00 0.00 39.89 3.85
1764 2063 6.126449 GGATTAAAACCCTGGAGGAGTAGATT 60.126 42.308 0.00 0.00 39.89 2.40
1818 2117 0.323725 ATTTCTCCAGCGGTGGCAAT 60.324 50.000 28.72 21.02 44.60 3.56
1969 2268 1.685224 GTGCTGGGGTTGGAGATCA 59.315 57.895 0.00 0.00 0.00 2.92
2038 2337 4.743151 CGTGCTCACAAGTAAGTAAACTCA 59.257 41.667 0.69 0.00 0.00 3.41
2096 2395 7.204604 TCATTGCATGCTAATGAAATTCGATT 58.795 30.769 28.08 1.40 38.71 3.34
2192 2496 0.957395 CAGGCATTGTTGAGGAGCGT 60.957 55.000 0.00 0.00 0.00 5.07
2271 2575 6.140786 TGTAATCTCGATGAATACGTGCTAC 58.859 40.000 0.00 0.00 34.61 3.58
2308 2613 1.066716 CATGACTTTGTGGGGGCAATG 60.067 52.381 0.00 0.00 0.00 2.82
2322 2627 4.892934 GGGGGCAATGTCTGTATGAATTAA 59.107 41.667 0.00 0.00 0.00 1.40
2410 2716 5.592688 TGTGTGAGATGCATGAATGATTGAT 59.407 36.000 2.46 0.00 0.00 2.57
2450 2756 4.100189 TGTTGGAGTGTTAATTTGGTTGGG 59.900 41.667 0.00 0.00 0.00 4.12
2457 2763 3.320541 TGTTAATTTGGTTGGGCACTCTG 59.679 43.478 0.00 0.00 0.00 3.35
2459 2765 1.915141 ATTTGGTTGGGCACTCTGAG 58.085 50.000 2.45 2.45 0.00 3.35
2461 2767 2.360475 GGTTGGGCACTCTGAGGC 60.360 66.667 9.85 9.32 0.00 4.70
2504 4325 6.435430 TTTGTATCGCTTGATGCTACATTT 57.565 33.333 0.00 0.00 40.11 2.32
2505 4326 5.657470 TGTATCGCTTGATGCTACATTTC 57.343 39.130 0.00 0.00 40.11 2.17
2534 4356 3.604875 AAGTCGCCCTTTATCGAAAGA 57.395 42.857 0.00 0.00 44.23 2.52
2635 4458 5.760253 CCACGCTTCATAAACTTGATAGGAT 59.240 40.000 0.00 0.00 0.00 3.24
2706 4529 6.981722 AGGAAATTAGTGCGTGAAATTTCTT 58.018 32.000 18.64 12.25 43.90 2.52
2744 4567 0.905809 TTTCGTCCGGGGATGAAGGA 60.906 55.000 18.83 6.28 46.64 3.36
2781 4604 1.604755 CCCGTGAATTCCGTTTTGACA 59.395 47.619 2.27 0.00 0.00 3.58
2788 4611 5.625311 GTGAATTCCGTTTTGACATGTCTTC 59.375 40.000 25.55 16.92 0.00 2.87
2794 4617 5.235616 TCCGTTTTGACATGTCTTCTGTTAC 59.764 40.000 25.55 12.64 0.00 2.50
2809 4632 6.708502 TCTTCTGTTACAAACGATGAATTCCA 59.291 34.615 2.27 0.00 0.00 3.53
2861 4684 2.251818 GTGCAGGCCTCAGATCCTATA 58.748 52.381 0.00 0.00 0.00 1.31
2866 4689 2.096248 GGCCTCAGATCCTATAGACGG 58.904 57.143 0.00 0.00 0.00 4.79
2867 4690 1.474879 GCCTCAGATCCTATAGACGGC 59.525 57.143 0.00 0.00 0.00 5.68
2868 4691 2.882229 GCCTCAGATCCTATAGACGGCT 60.882 54.545 0.00 0.00 32.53 5.52
2891 5904 3.328931 TCACAAGCTCTCCTCCAAATCTT 59.671 43.478 0.00 0.00 0.00 2.40
2893 5906 4.522022 CACAAGCTCTCCTCCAAATCTTTT 59.478 41.667 0.00 0.00 0.00 2.27
2920 5933 8.416329 AGAAGGTATTTTTCACATCCATAATGC 58.584 33.333 0.00 0.00 39.12 3.56
2939 5952 8.929746 CATAATGCATGTACCACTATTGTAGAG 58.070 37.037 0.00 0.00 0.00 2.43
2985 5998 4.393371 GCCACACAAAGGAGTTAGATCTTC 59.607 45.833 0.00 0.00 0.00 2.87
3004 6017 7.504238 AGATCTTCGATGTTCTTAGATGTACCT 59.496 37.037 6.16 0.00 0.00 3.08
3032 6045 2.030893 ACATGCAGTTTGGTGTCATTCG 60.031 45.455 0.00 0.00 0.00 3.34
3061 6074 6.819284 ACAATCAGATGGTTGTGTTTGATTT 58.181 32.000 10.57 0.00 37.19 2.17
3062 6075 6.702723 ACAATCAGATGGTTGTGTTTGATTTG 59.297 34.615 10.57 0.00 37.19 2.32
3063 6076 4.619973 TCAGATGGTTGTGTTTGATTTGC 58.380 39.130 0.00 0.00 0.00 3.68
3089 6102 6.891908 AGGACTTAATATGAGTGCCAATGTTT 59.108 34.615 7.20 0.00 36.27 2.83
3112 6125 5.356882 TGACGAAACAATGAGTCATTTCC 57.643 39.130 15.85 4.87 38.52 3.13
3117 6130 5.685511 CGAAACAATGAGTCATTTCCGTTTT 59.314 36.000 23.22 14.97 32.00 2.43
3120 6133 3.575965 ATGAGTCATTTCCGTTTTGCC 57.424 42.857 0.00 0.00 0.00 4.52
3121 6134 1.265635 TGAGTCATTTCCGTTTTGCCG 59.734 47.619 0.00 0.00 0.00 5.69
3134 6147 3.374058 CGTTTTGCCGAATTCCTGATACT 59.626 43.478 0.00 0.00 0.00 2.12
3138 6151 3.531538 TGCCGAATTCCTGATACTCAAC 58.468 45.455 0.00 0.00 0.00 3.18
3147 6160 4.960938 TCCTGATACTCAACATGCCATAC 58.039 43.478 0.00 0.00 0.00 2.39
3152 6165 7.498900 CCTGATACTCAACATGCCATACTTTTA 59.501 37.037 0.00 0.00 0.00 1.52
3167 6180 2.892852 ACTTTTAGCAAAGCTCATGCCA 59.107 40.909 17.97 4.87 44.91 4.92
3180 6193 2.995258 CTCATGCCAAAATTTTCGGTGG 59.005 45.455 16.01 10.46 0.00 4.61
3194 6207 6.746745 TTTTCGGTGGAGGTATTGTATTTC 57.253 37.500 0.00 0.00 0.00 2.17
3199 6212 6.098552 TCGGTGGAGGTATTGTATTTCATGTA 59.901 38.462 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.305307 TGCATATTTGGCATGCCTGCT 61.305 47.619 34.38 23.22 46.65 4.24
1 2 0.105224 TGCATATTTGGCATGCCTGC 59.895 50.000 35.53 32.90 46.65 4.85
2 3 1.872237 GCTGCATATTTGGCATGCCTG 60.872 52.381 35.53 25.57 46.65 4.85
3 4 0.391597 GCTGCATATTTGGCATGCCT 59.608 50.000 35.53 19.66 46.65 4.75
4 5 0.391597 AGCTGCATATTTGGCATGCC 59.608 50.000 30.54 30.54 46.65 4.40
6 7 3.660501 ATGAGCTGCATATTTGGCATG 57.339 42.857 1.02 0.00 41.06 4.06
7 8 3.189910 CGTATGAGCTGCATATTTGGCAT 59.810 43.478 1.02 0.00 41.29 4.40
8 9 2.549329 CGTATGAGCTGCATATTTGGCA 59.451 45.455 1.02 0.00 41.29 4.92
9 10 2.666619 GCGTATGAGCTGCATATTTGGC 60.667 50.000 1.02 0.00 41.29 4.52
10 11 2.549329 TGCGTATGAGCTGCATATTTGG 59.451 45.455 1.02 0.00 41.29 3.28
11 12 3.002553 TGTGCGTATGAGCTGCATATTTG 59.997 43.478 1.02 0.00 41.29 2.32
12 13 3.002656 GTGTGCGTATGAGCTGCATATTT 59.997 43.478 1.02 0.00 41.29 1.40
13 14 2.545526 GTGTGCGTATGAGCTGCATATT 59.454 45.455 1.02 0.00 41.29 1.28
14 15 2.138320 GTGTGCGTATGAGCTGCATAT 58.862 47.619 1.02 0.00 41.29 1.78
15 16 1.134848 TGTGTGCGTATGAGCTGCATA 60.135 47.619 1.02 0.00 41.23 3.14
16 17 0.391528 TGTGTGCGTATGAGCTGCAT 60.392 50.000 1.02 0.00 41.23 3.96
17 18 0.391528 ATGTGTGCGTATGAGCTGCA 60.392 50.000 1.02 0.00 38.13 4.41
18 19 1.570813 TATGTGTGCGTATGAGCTGC 58.429 50.000 0.00 0.00 38.13 5.25
19 20 3.126073 ACATATGTGTGCGTATGAGCTG 58.874 45.455 7.78 0.00 43.73 4.24
20 21 3.459232 ACATATGTGTGCGTATGAGCT 57.541 42.857 7.78 0.00 43.73 4.09
21 22 4.048504 TGTACATATGTGTGCGTATGAGC 58.951 43.478 18.81 6.29 43.73 4.26
22 23 6.292328 CCTTTGTACATATGTGTGCGTATGAG 60.292 42.308 18.81 4.23 43.73 2.90
23 24 5.522097 CCTTTGTACATATGTGTGCGTATGA 59.478 40.000 18.81 0.00 43.73 2.15
24 25 5.737353 CCTTTGTACATATGTGTGCGTATG 58.263 41.667 18.81 5.56 45.47 2.39
25 26 4.272504 GCCTTTGTACATATGTGTGCGTAT 59.727 41.667 18.81 0.00 43.01 3.06
26 27 3.619483 GCCTTTGTACATATGTGTGCGTA 59.381 43.478 18.81 0.00 43.01 4.42
27 28 2.418628 GCCTTTGTACATATGTGTGCGT 59.581 45.455 18.81 0.00 43.01 5.24
28 29 2.418280 TGCCTTTGTACATATGTGTGCG 59.582 45.455 18.81 3.25 43.01 5.34
29 30 3.427503 GGTGCCTTTGTACATATGTGTGC 60.428 47.826 18.81 4.42 39.39 4.57
30 31 3.181511 CGGTGCCTTTGTACATATGTGTG 60.182 47.826 18.81 3.94 39.39 3.82
31 32 3.006940 CGGTGCCTTTGTACATATGTGT 58.993 45.455 18.81 0.00 42.39 3.72
32 33 3.006940 ACGGTGCCTTTGTACATATGTG 58.993 45.455 18.81 1.40 0.00 3.21
33 34 3.343941 ACGGTGCCTTTGTACATATGT 57.656 42.857 13.93 13.93 0.00 2.29
34 35 6.371809 AAATACGGTGCCTTTGTACATATG 57.628 37.500 0.00 0.00 0.00 1.78
35 36 8.400186 GTTTAAATACGGTGCCTTTGTACATAT 58.600 33.333 0.00 0.00 0.00 1.78
36 37 7.412781 CGTTTAAATACGGTGCCTTTGTACATA 60.413 37.037 0.00 0.00 37.86 2.29
37 38 6.614160 GTTTAAATACGGTGCCTTTGTACAT 58.386 36.000 0.00 0.00 0.00 2.29
38 39 5.333952 CGTTTAAATACGGTGCCTTTGTACA 60.334 40.000 0.00 0.00 37.86 2.90
39 40 5.081394 CGTTTAAATACGGTGCCTTTGTAC 58.919 41.667 0.00 0.00 37.86 2.90
40 41 4.378253 GCGTTTAAATACGGTGCCTTTGTA 60.378 41.667 2.17 0.00 41.65 2.41
41 42 3.609879 GCGTTTAAATACGGTGCCTTTGT 60.610 43.478 2.17 0.00 41.65 2.83
42 43 2.912345 GCGTTTAAATACGGTGCCTTTG 59.088 45.455 2.17 0.00 41.65 2.77
43 44 3.206034 GCGTTTAAATACGGTGCCTTT 57.794 42.857 2.17 0.00 41.65 3.11
44 45 2.905959 GCGTTTAAATACGGTGCCTT 57.094 45.000 2.17 0.00 41.65 4.35
50 51 2.261345 TGTCCGAGCGTTTAAATACGG 58.739 47.619 14.48 14.48 41.65 4.02
51 52 3.365820 ACTTGTCCGAGCGTTTAAATACG 59.634 43.478 0.00 0.00 44.09 3.06
52 53 4.916099 ACTTGTCCGAGCGTTTAAATAC 57.084 40.909 0.00 0.00 0.00 1.89
53 54 7.043192 GCTATAACTTGTCCGAGCGTTTAAATA 60.043 37.037 0.00 0.00 0.00 1.40
54 55 6.238022 GCTATAACTTGTCCGAGCGTTTAAAT 60.238 38.462 0.00 0.00 0.00 1.40
55 56 5.062558 GCTATAACTTGTCCGAGCGTTTAAA 59.937 40.000 0.00 0.00 0.00 1.52
56 57 4.563976 GCTATAACTTGTCCGAGCGTTTAA 59.436 41.667 0.00 0.00 0.00 1.52
57 58 4.107622 GCTATAACTTGTCCGAGCGTTTA 58.892 43.478 0.00 0.00 0.00 2.01
58 59 2.928116 GCTATAACTTGTCCGAGCGTTT 59.072 45.455 0.00 0.00 0.00 3.60
59 60 2.094390 TGCTATAACTTGTCCGAGCGTT 60.094 45.455 0.00 0.00 32.53 4.84
60 61 1.475280 TGCTATAACTTGTCCGAGCGT 59.525 47.619 0.00 0.00 32.53 5.07
61 62 2.203800 TGCTATAACTTGTCCGAGCG 57.796 50.000 0.00 0.00 32.53 5.03
62 63 3.738282 CAGATGCTATAACTTGTCCGAGC 59.262 47.826 0.00 0.00 0.00 5.03
63 64 4.938080 ACAGATGCTATAACTTGTCCGAG 58.062 43.478 0.00 0.00 0.00 4.63
64 65 5.339008 AACAGATGCTATAACTTGTCCGA 57.661 39.130 0.00 0.00 0.00 4.55
65 66 6.422776 AAAACAGATGCTATAACTTGTCCG 57.577 37.500 0.00 0.00 0.00 4.79
66 67 8.893727 ACATAAAACAGATGCTATAACTTGTCC 58.106 33.333 0.00 0.00 0.00 4.02
94 95 9.699703 GTCACTTTGGTGCCTAAAATTATAAAA 57.300 29.630 0.00 0.00 42.72 1.52
95 96 8.308207 GGTCACTTTGGTGCCTAAAATTATAAA 58.692 33.333 0.00 0.00 42.72 1.40
96 97 7.451877 TGGTCACTTTGGTGCCTAAAATTATAA 59.548 33.333 0.00 0.00 42.72 0.98
97 98 6.948886 TGGTCACTTTGGTGCCTAAAATTATA 59.051 34.615 0.00 0.00 42.72 0.98
98 99 5.777732 TGGTCACTTTGGTGCCTAAAATTAT 59.222 36.000 0.00 0.00 42.72 1.28
99 100 5.141182 TGGTCACTTTGGTGCCTAAAATTA 58.859 37.500 0.00 0.00 42.72 1.40
100 101 3.964031 TGGTCACTTTGGTGCCTAAAATT 59.036 39.130 0.00 0.00 42.72 1.82
101 102 3.571590 TGGTCACTTTGGTGCCTAAAAT 58.428 40.909 0.00 0.00 42.72 1.82
102 103 3.019799 TGGTCACTTTGGTGCCTAAAA 57.980 42.857 0.00 0.00 42.72 1.52
103 104 2.738587 TGGTCACTTTGGTGCCTAAA 57.261 45.000 0.00 0.00 42.72 1.85
104 105 2.969821 ATGGTCACTTTGGTGCCTAA 57.030 45.000 0.00 0.00 42.72 2.69
105 106 3.073209 TGTTATGGTCACTTTGGTGCCTA 59.927 43.478 0.00 0.00 42.72 3.93
106 107 2.158534 TGTTATGGTCACTTTGGTGCCT 60.159 45.455 0.00 0.00 42.72 4.75
107 108 2.235016 TGTTATGGTCACTTTGGTGCC 58.765 47.619 0.00 0.00 42.72 5.01
108 109 4.048504 GTTTGTTATGGTCACTTTGGTGC 58.951 43.478 0.00 0.00 42.72 5.01
109 110 5.255710 TGTTTGTTATGGTCACTTTGGTG 57.744 39.130 0.00 0.00 44.23 4.17
110 111 5.420739 ACTTGTTTGTTATGGTCACTTTGGT 59.579 36.000 0.00 0.00 0.00 3.67
111 112 5.901552 ACTTGTTTGTTATGGTCACTTTGG 58.098 37.500 0.00 0.00 0.00 3.28
112 113 8.918961 TTAACTTGTTTGTTATGGTCACTTTG 57.081 30.769 0.00 0.00 33.16 2.77
113 114 8.194769 CCTTAACTTGTTTGTTATGGTCACTTT 58.805 33.333 9.68 0.00 40.18 2.66
114 115 7.683463 GCCTTAACTTGTTTGTTATGGTCACTT 60.683 37.037 15.70 0.00 43.65 3.16
115 116 6.238925 GCCTTAACTTGTTTGTTATGGTCACT 60.239 38.462 15.70 0.00 43.65 3.41
116 117 5.918576 GCCTTAACTTGTTTGTTATGGTCAC 59.081 40.000 15.70 2.59 43.65 3.67
117 118 5.594725 TGCCTTAACTTGTTTGTTATGGTCA 59.405 36.000 15.70 12.52 43.65 4.02
118 119 5.918576 GTGCCTTAACTTGTTTGTTATGGTC 59.081 40.000 15.70 10.94 43.65 4.02
119 120 5.221362 GGTGCCTTAACTTGTTTGTTATGGT 60.221 40.000 15.70 0.00 43.65 3.55
120 121 5.227152 GGTGCCTTAACTTGTTTGTTATGG 58.773 41.667 12.20 12.20 44.13 2.74
121 122 5.221342 TGGGTGCCTTAACTTGTTTGTTATG 60.221 40.000 0.00 0.00 33.16 1.90
122 123 4.896482 TGGGTGCCTTAACTTGTTTGTTAT 59.104 37.500 0.00 0.00 33.16 1.89
123 124 4.279145 TGGGTGCCTTAACTTGTTTGTTA 58.721 39.130 0.00 0.00 0.00 2.41
124 125 3.100671 TGGGTGCCTTAACTTGTTTGTT 58.899 40.909 0.00 0.00 0.00 2.83
125 126 2.741145 TGGGTGCCTTAACTTGTTTGT 58.259 42.857 0.00 0.00 0.00 2.83
126 127 3.554752 CCATGGGTGCCTTAACTTGTTTG 60.555 47.826 2.85 0.00 0.00 2.93
127 128 2.632512 CCATGGGTGCCTTAACTTGTTT 59.367 45.455 2.85 0.00 0.00 2.83
128 129 2.247358 CCATGGGTGCCTTAACTTGTT 58.753 47.619 2.85 0.00 0.00 2.83
129 130 1.146982 ACCATGGGTGCCTTAACTTGT 59.853 47.619 18.09 0.00 32.98 3.16
130 131 1.923356 ACCATGGGTGCCTTAACTTG 58.077 50.000 18.09 0.00 32.98 3.16
131 132 5.663158 ATATACCATGGGTGCCTTAACTT 57.337 39.130 18.09 0.00 36.19 2.66
132 133 5.663158 AATATACCATGGGTGCCTTAACT 57.337 39.130 18.09 0.00 36.19 2.24
133 134 7.504574 AGTTAAATATACCATGGGTGCCTTAAC 59.495 37.037 18.09 20.39 36.19 2.01
134 135 7.588169 AGTTAAATATACCATGGGTGCCTTAA 58.412 34.615 18.09 10.94 36.19 1.85
135 136 7.156694 AGTTAAATATACCATGGGTGCCTTA 57.843 36.000 18.09 5.30 36.19 2.69
136 137 6.025793 AGTTAAATATACCATGGGTGCCTT 57.974 37.500 18.09 6.30 36.19 4.35
137 138 5.631119 GAGTTAAATATACCATGGGTGCCT 58.369 41.667 18.09 0.00 36.19 4.75
138 139 4.454504 CGAGTTAAATATACCATGGGTGCC 59.545 45.833 18.09 0.00 36.19 5.01
139 140 5.061179 ACGAGTTAAATATACCATGGGTGC 58.939 41.667 18.09 0.00 36.19 5.01
140 141 6.017440 CCAACGAGTTAAATATACCATGGGTG 60.017 42.308 18.09 0.00 36.19 4.61
141 142 6.059484 CCAACGAGTTAAATATACCATGGGT 58.941 40.000 18.09 6.93 40.16 4.51
142 143 6.017440 CACCAACGAGTTAAATATACCATGGG 60.017 42.308 18.09 0.00 0.00 4.00
143 144 6.764085 TCACCAACGAGTTAAATATACCATGG 59.236 38.462 11.19 11.19 0.00 3.66
144 145 7.780008 TCACCAACGAGTTAAATATACCATG 57.220 36.000 0.00 0.00 0.00 3.66
151 152 9.661563 AGACAAATATCACCAACGAGTTAAATA 57.338 29.630 0.00 0.00 0.00 1.40
152 153 8.561738 AGACAAATATCACCAACGAGTTAAAT 57.438 30.769 0.00 0.00 0.00 1.40
153 154 7.972832 AGACAAATATCACCAACGAGTTAAA 57.027 32.000 0.00 0.00 0.00 1.52
154 155 7.972832 AAGACAAATATCACCAACGAGTTAA 57.027 32.000 0.00 0.00 0.00 2.01
155 156 7.972832 AAAGACAAATATCACCAACGAGTTA 57.027 32.000 0.00 0.00 0.00 2.24
156 157 6.877611 AAAGACAAATATCACCAACGAGTT 57.122 33.333 0.00 0.00 0.00 3.01
157 158 8.561738 AATAAAGACAAATATCACCAACGAGT 57.438 30.769 0.00 0.00 0.00 4.18
171 172 9.515020 CTGCTCAACTTTGTAAATAAAGACAAA 57.485 29.630 6.25 0.00 41.90 2.83
172 173 8.898761 TCTGCTCAACTTTGTAAATAAAGACAA 58.101 29.630 6.25 0.00 39.46 3.18
173 174 8.342634 GTCTGCTCAACTTTGTAAATAAAGACA 58.657 33.333 6.25 0.00 39.46 3.41
174 175 7.803659 GGTCTGCTCAACTTTGTAAATAAAGAC 59.196 37.037 6.25 0.00 39.46 3.01
175 176 7.719633 AGGTCTGCTCAACTTTGTAAATAAAGA 59.280 33.333 6.25 0.00 39.46 2.52
176 177 7.805071 CAGGTCTGCTCAACTTTGTAAATAAAG 59.195 37.037 0.00 0.00 42.09 1.85
177 178 7.648142 CAGGTCTGCTCAACTTTGTAAATAAA 58.352 34.615 0.00 0.00 0.00 1.40
178 179 7.202016 CAGGTCTGCTCAACTTTGTAAATAA 57.798 36.000 0.00 0.00 0.00 1.40
179 180 6.801539 CAGGTCTGCTCAACTTTGTAAATA 57.198 37.500 0.00 0.00 0.00 1.40
180 181 5.695851 CAGGTCTGCTCAACTTTGTAAAT 57.304 39.130 0.00 0.00 0.00 1.40
202 203 2.399356 GGAGGCTTTGGCACGTAGC 61.399 63.158 6.84 6.84 44.65 3.58
203 204 1.003839 TGGAGGCTTTGGCACGTAG 60.004 57.895 0.00 0.00 40.87 3.51
204 205 1.302192 GTGGAGGCTTTGGCACGTA 60.302 57.895 0.00 0.00 40.87 3.57
205 206 2.594592 GTGGAGGCTTTGGCACGT 60.595 61.111 0.00 0.00 40.87 4.49
206 207 3.365265 GGTGGAGGCTTTGGCACG 61.365 66.667 0.00 0.00 40.87 5.34
207 208 1.973812 GAGGTGGAGGCTTTGGCAC 60.974 63.158 0.00 0.00 40.87 5.01
208 209 2.436109 GAGGTGGAGGCTTTGGCA 59.564 61.111 0.00 0.00 40.87 4.92
209 210 2.361737 GGAGGTGGAGGCTTTGGC 60.362 66.667 0.00 0.00 37.82 4.52
210 211 0.895559 GTTGGAGGTGGAGGCTTTGG 60.896 60.000 0.00 0.00 0.00 3.28
211 212 0.895559 GGTTGGAGGTGGAGGCTTTG 60.896 60.000 0.00 0.00 0.00 2.77
212 213 1.068352 AGGTTGGAGGTGGAGGCTTT 61.068 55.000 0.00 0.00 0.00 3.51
213 214 1.464198 AGGTTGGAGGTGGAGGCTT 60.464 57.895 0.00 0.00 0.00 4.35
214 215 2.208349 AGGTTGGAGGTGGAGGCT 59.792 61.111 0.00 0.00 0.00 4.58
215 216 2.352805 CAGGTTGGAGGTGGAGGC 59.647 66.667 0.00 0.00 0.00 4.70
216 217 1.679898 GACAGGTTGGAGGTGGAGG 59.320 63.158 0.00 0.00 0.00 4.30
217 218 1.293498 CGACAGGTTGGAGGTGGAG 59.707 63.158 0.00 0.00 0.00 3.86
218 219 1.458777 ACGACAGGTTGGAGGTGGA 60.459 57.895 0.00 0.00 0.00 4.02
219 220 1.301716 CACGACAGGTTGGAGGTGG 60.302 63.158 0.00 0.00 0.00 4.61
220 221 1.961277 GCACGACAGGTTGGAGGTG 60.961 63.158 0.00 0.00 0.00 4.00
221 222 2.426023 GCACGACAGGTTGGAGGT 59.574 61.111 0.00 0.00 0.00 3.85
222 223 2.358737 GGCACGACAGGTTGGAGG 60.359 66.667 0.00 0.00 0.00 4.30
223 224 2.358737 GGGCACGACAGGTTGGAG 60.359 66.667 0.00 0.00 0.00 3.86
224 225 2.847234 AGGGCACGACAGGTTGGA 60.847 61.111 0.00 0.00 0.00 3.53
225 226 2.358737 GAGGGCACGACAGGTTGG 60.359 66.667 0.00 0.00 0.00 3.77
226 227 2.738521 CGAGGGCACGACAGGTTG 60.739 66.667 0.00 0.00 35.09 3.77
227 228 3.231736 ACGAGGGCACGACAGGTT 61.232 61.111 9.99 0.00 37.03 3.50
228 229 3.991051 CACGAGGGCACGACAGGT 61.991 66.667 9.99 0.00 37.03 4.00
229 230 2.507110 AATCACGAGGGCACGACAGG 62.507 60.000 9.99 0.00 37.03 4.00
230 231 0.670546 AAATCACGAGGGCACGACAG 60.671 55.000 9.99 1.03 37.03 3.51
231 232 0.948623 CAAATCACGAGGGCACGACA 60.949 55.000 9.99 0.00 37.03 4.35
232 233 1.787847 CAAATCACGAGGGCACGAC 59.212 57.895 9.99 0.00 37.03 4.34
233 234 2.032634 GCAAATCACGAGGGCACGA 61.033 57.895 9.99 0.00 37.03 4.35
234 235 2.034879 AGCAAATCACGAGGGCACG 61.035 57.895 0.00 2.09 39.31 5.34
235 236 1.503542 CAGCAAATCACGAGGGCAC 59.496 57.895 0.00 0.00 0.00 5.01
236 237 2.334946 GCAGCAAATCACGAGGGCA 61.335 57.895 0.00 0.00 0.00 5.36
237 238 2.262471 CTGCAGCAAATCACGAGGGC 62.262 60.000 0.00 0.00 0.00 5.19
238 239 0.957395 ACTGCAGCAAATCACGAGGG 60.957 55.000 15.27 0.00 0.00 4.30
239 240 1.394917 GTACTGCAGCAAATCACGAGG 59.605 52.381 15.27 0.00 0.00 4.63
240 241 2.068519 TGTACTGCAGCAAATCACGAG 58.931 47.619 15.27 0.00 0.00 4.18
241 242 2.162319 TGTACTGCAGCAAATCACGA 57.838 45.000 15.27 0.00 0.00 4.35
242 243 2.223112 GGATGTACTGCAGCAAATCACG 60.223 50.000 17.28 0.00 34.68 4.35
243 244 2.098117 GGGATGTACTGCAGCAAATCAC 59.902 50.000 17.28 11.13 34.68 3.06
244 245 2.368439 GGGATGTACTGCAGCAAATCA 58.632 47.619 17.28 8.87 34.68 2.57
245 246 1.678101 GGGGATGTACTGCAGCAAATC 59.322 52.381 15.27 11.40 34.68 2.17
246 247 1.686115 GGGGGATGTACTGCAGCAAAT 60.686 52.381 15.27 0.00 34.68 2.32
247 248 0.323360 GGGGGATGTACTGCAGCAAA 60.323 55.000 15.27 0.00 34.68 3.68
248 249 1.302949 GGGGGATGTACTGCAGCAA 59.697 57.895 15.27 0.00 34.68 3.91
249 250 2.998097 GGGGGATGTACTGCAGCA 59.002 61.111 15.27 4.85 34.68 4.41
250 251 2.203070 CGGGGGATGTACTGCAGC 60.203 66.667 15.27 0.00 0.00 5.25
251 252 2.367202 ACCGGGGGATGTACTGCAG 61.367 63.158 13.48 13.48 0.00 4.41
252 253 2.285069 ACCGGGGGATGTACTGCA 60.285 61.111 6.32 0.00 0.00 4.41
253 254 2.189521 CACCGGGGGATGTACTGC 59.810 66.667 6.32 0.00 0.00 4.40
254 255 1.220749 CACACCGGGGGATGTACTG 59.779 63.158 9.50 0.00 0.00 2.74
255 256 1.229400 ACACACCGGGGGATGTACT 60.229 57.895 9.50 0.00 0.00 2.73
256 257 1.078708 CACACACCGGGGGATGTAC 60.079 63.158 9.50 0.00 0.00 2.90
257 258 2.961893 GCACACACCGGGGGATGTA 61.962 63.158 9.50 0.00 0.00 2.29
258 259 4.344865 GCACACACCGGGGGATGT 62.345 66.667 9.50 0.00 0.00 3.06
273 274 2.282391 GGGTGTGCTGTCATGGCA 60.282 61.111 0.00 0.00 37.36 4.92
274 275 3.064324 GGGGTGTGCTGTCATGGC 61.064 66.667 0.00 0.00 0.00 4.40
275 276 1.973281 GTGGGGTGTGCTGTCATGG 60.973 63.158 0.00 0.00 0.00 3.66
276 277 0.822944 TTGTGGGGTGTGCTGTCATG 60.823 55.000 0.00 0.00 0.00 3.07
277 278 0.823356 GTTGTGGGGTGTGCTGTCAT 60.823 55.000 0.00 0.00 0.00 3.06
278 279 1.453015 GTTGTGGGGTGTGCTGTCA 60.453 57.895 0.00 0.00 0.00 3.58
279 280 0.107831 TAGTTGTGGGGTGTGCTGTC 59.892 55.000 0.00 0.00 0.00 3.51
280 281 0.548989 TTAGTTGTGGGGTGTGCTGT 59.451 50.000 0.00 0.00 0.00 4.40
281 282 1.608590 CTTTAGTTGTGGGGTGTGCTG 59.391 52.381 0.00 0.00 0.00 4.41
282 283 1.981256 CTTTAGTTGTGGGGTGTGCT 58.019 50.000 0.00 0.00 0.00 4.40
283 284 0.313987 GCTTTAGTTGTGGGGTGTGC 59.686 55.000 0.00 0.00 0.00 4.57
284 285 0.958822 GGCTTTAGTTGTGGGGTGTG 59.041 55.000 0.00 0.00 0.00 3.82
285 286 0.178973 GGGCTTTAGTTGTGGGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
286 287 1.241315 CGGGCTTTAGTTGTGGGGTG 61.241 60.000 0.00 0.00 0.00 4.61
287 288 1.074248 CGGGCTTTAGTTGTGGGGT 59.926 57.895 0.00 0.00 0.00 4.95
288 289 0.034477 ATCGGGCTTTAGTTGTGGGG 60.034 55.000 0.00 0.00 0.00 4.96
289 290 1.379527 GATCGGGCTTTAGTTGTGGG 58.620 55.000 0.00 0.00 0.00 4.61
290 291 1.006832 CGATCGGGCTTTAGTTGTGG 58.993 55.000 7.38 0.00 0.00 4.17
291 292 2.004583 TCGATCGGGCTTTAGTTGTG 57.995 50.000 16.41 0.00 0.00 3.33
292 293 2.981859 ATCGATCGGGCTTTAGTTGT 57.018 45.000 16.41 0.00 0.00 3.32
293 294 5.062308 GCTTATATCGATCGGGCTTTAGTTG 59.938 44.000 16.41 0.00 0.00 3.16
294 295 5.169295 GCTTATATCGATCGGGCTTTAGTT 58.831 41.667 16.41 0.00 0.00 2.24
295 296 4.219944 TGCTTATATCGATCGGGCTTTAGT 59.780 41.667 16.41 0.00 0.00 2.24
296 297 4.744570 TGCTTATATCGATCGGGCTTTAG 58.255 43.478 16.41 7.39 0.00 1.85
297 298 4.794278 TGCTTATATCGATCGGGCTTTA 57.206 40.909 16.41 0.00 0.00 1.85
298 299 3.678056 TGCTTATATCGATCGGGCTTT 57.322 42.857 16.41 0.00 0.00 3.51
299 300 3.678056 TTGCTTATATCGATCGGGCTT 57.322 42.857 16.41 0.70 0.00 4.35
300 301 3.678056 TTTGCTTATATCGATCGGGCT 57.322 42.857 16.41 3.13 0.00 5.19
301 302 3.684788 ACATTTGCTTATATCGATCGGGC 59.315 43.478 16.41 10.49 0.00 6.13
302 303 6.811665 TCTTACATTTGCTTATATCGATCGGG 59.188 38.462 16.41 0.51 0.00 5.14
303 304 7.542477 ACTCTTACATTTGCTTATATCGATCGG 59.458 37.037 16.41 0.00 0.00 4.18
304 305 8.454293 ACTCTTACATTTGCTTATATCGATCG 57.546 34.615 9.36 9.36 0.00 3.69
321 322 9.402320 GGCTAGATATCATCTGATACTCTTACA 57.598 37.037 5.32 0.00 39.57 2.41
322 323 9.627123 AGGCTAGATATCATCTGATACTCTTAC 57.373 37.037 5.32 3.94 39.57 2.34
325 326 9.851686 CTAAGGCTAGATATCATCTGATACTCT 57.148 37.037 5.32 8.81 39.57 3.24
326 327 9.066892 CCTAAGGCTAGATATCATCTGATACTC 57.933 40.741 5.32 2.92 39.57 2.59
327 328 7.505585 GCCTAAGGCTAGATATCATCTGATACT 59.494 40.741 5.32 5.24 46.69 2.12
328 329 7.657336 GCCTAAGGCTAGATATCATCTGATAC 58.343 42.308 5.32 0.00 46.69 2.24
329 330 7.831691 GCCTAAGGCTAGATATCATCTGATA 57.168 40.000 5.32 2.54 46.69 2.15
330 331 6.729690 GCCTAAGGCTAGATATCATCTGAT 57.270 41.667 5.32 0.00 46.69 2.90
346 347 1.617357 GTACCACCGGATAGCCTAAGG 59.383 57.143 9.46 0.00 0.00 2.69
347 348 1.268899 CGTACCACCGGATAGCCTAAG 59.731 57.143 9.46 0.00 0.00 2.18
348 349 1.133823 TCGTACCACCGGATAGCCTAA 60.134 52.381 9.46 0.00 0.00 2.69
349 350 0.473755 TCGTACCACCGGATAGCCTA 59.526 55.000 9.46 0.00 0.00 3.93
350 351 0.822532 CTCGTACCACCGGATAGCCT 60.823 60.000 9.46 0.00 0.00 4.58
351 352 1.658673 CTCGTACCACCGGATAGCC 59.341 63.158 9.46 0.00 0.00 3.93
352 353 1.007618 GCTCGTACCACCGGATAGC 60.008 63.158 9.46 1.90 0.00 2.97
353 354 0.592148 GAGCTCGTACCACCGGATAG 59.408 60.000 9.46 0.00 0.00 2.08
354 355 0.820891 GGAGCTCGTACCACCGGATA 60.821 60.000 9.46 0.00 0.00 2.59
355 356 2.125961 GGAGCTCGTACCACCGGAT 61.126 63.158 9.46 0.00 0.00 4.18
356 357 2.753043 GGAGCTCGTACCACCGGA 60.753 66.667 9.46 0.00 0.00 5.14
357 358 4.189188 CGGAGCTCGTACCACCGG 62.189 72.222 7.83 0.00 39.92 5.28
358 359 4.189188 CCGGAGCTCGTACCACCG 62.189 72.222 7.83 4.05 42.67 4.94
359 360 4.509737 GCCGGAGCTCGTACCACC 62.510 72.222 5.05 0.00 37.11 4.61
360 361 4.849329 CGCCGGAGCTCGTACCAC 62.849 72.222 5.05 0.00 36.60 4.16
362 363 4.253257 CTCGCCGGAGCTCGTACC 62.253 72.222 5.05 0.00 36.60 3.34
370 371 3.376935 ATCCAACAGCTCGCCGGAG 62.377 63.158 5.05 0.00 43.46 4.63
371 372 3.371097 GATCCAACAGCTCGCCGGA 62.371 63.158 5.05 0.00 0.00 5.14
372 373 2.892425 GATCCAACAGCTCGCCGG 60.892 66.667 0.00 0.00 0.00 6.13
373 374 2.169789 CAGATCCAACAGCTCGCCG 61.170 63.158 0.00 0.00 0.00 6.46
374 375 0.391661 TTCAGATCCAACAGCTCGCC 60.392 55.000 0.00 0.00 0.00 5.54
375 376 1.442769 TTTCAGATCCAACAGCTCGC 58.557 50.000 0.00 0.00 0.00 5.03
376 377 2.611292 GGATTTCAGATCCAACAGCTCG 59.389 50.000 0.28 0.00 38.09 5.03
377 378 3.614092 TGGATTTCAGATCCAACAGCTC 58.386 45.455 5.31 0.00 44.54 4.09
378 379 3.726557 TGGATTTCAGATCCAACAGCT 57.273 42.857 5.31 0.00 44.54 4.24
384 385 2.918934 TGACCCTTGGATTTCAGATCCA 59.081 45.455 3.70 3.70 45.71 3.41
385 386 3.282885 GTGACCCTTGGATTTCAGATCC 58.717 50.000 0.00 0.00 38.66 3.36
386 387 3.955471 TGTGACCCTTGGATTTCAGATC 58.045 45.455 0.00 0.00 0.00 2.75
387 388 4.018141 TCATGTGACCCTTGGATTTCAGAT 60.018 41.667 0.00 0.00 0.00 2.90
388 389 3.330405 TCATGTGACCCTTGGATTTCAGA 59.670 43.478 0.00 0.00 0.00 3.27
389 390 3.689347 TCATGTGACCCTTGGATTTCAG 58.311 45.455 0.00 0.00 0.00 3.02
390 391 3.805066 TCATGTGACCCTTGGATTTCA 57.195 42.857 0.00 0.00 0.00 2.69
391 392 6.966534 AATATCATGTGACCCTTGGATTTC 57.033 37.500 0.00 0.00 0.00 2.17
392 393 7.147672 GGAAAATATCATGTGACCCTTGGATTT 60.148 37.037 0.00 0.00 0.00 2.17
393 394 6.324770 GGAAAATATCATGTGACCCTTGGATT 59.675 38.462 0.00 0.00 0.00 3.01
394 395 5.835280 GGAAAATATCATGTGACCCTTGGAT 59.165 40.000 0.00 0.00 0.00 3.41
395 396 5.200483 GGAAAATATCATGTGACCCTTGGA 58.800 41.667 0.00 0.00 0.00 3.53
396 397 4.342092 GGGAAAATATCATGTGACCCTTGG 59.658 45.833 0.00 0.00 33.99 3.61
397 398 4.955450 TGGGAAAATATCATGTGACCCTTG 59.045 41.667 0.00 0.00 37.25 3.61
398 399 5.203528 CTGGGAAAATATCATGTGACCCTT 58.796 41.667 0.00 0.00 37.25 3.95
399 400 4.796606 CTGGGAAAATATCATGTGACCCT 58.203 43.478 0.00 0.00 37.25 4.34
400 401 3.319122 GCTGGGAAAATATCATGTGACCC 59.681 47.826 0.00 0.00 36.92 4.46
401 402 3.953612 TGCTGGGAAAATATCATGTGACC 59.046 43.478 0.00 0.00 0.00 4.02
402 403 5.581126 TTGCTGGGAAAATATCATGTGAC 57.419 39.130 0.00 0.00 0.00 3.67
407 408 5.426185 ACCACATTTGCTGGGAAAATATCAT 59.574 36.000 0.00 0.00 32.45 2.45
429 430 3.368531 CCAAGTAGACTTACTGGAGCACC 60.369 52.174 0.00 0.00 40.02 5.01
439 440 7.395206 TGTGCAGATTAGTACCAAGTAGACTTA 59.605 37.037 0.00 0.00 34.28 2.24
479 486 1.499049 GAACGAAACCGAGAGCTGTT 58.501 50.000 0.00 0.00 0.00 3.16
507 514 3.244215 TGGGAACAAACAAAAACAGTGCA 60.244 39.130 0.00 0.00 37.44 4.57
526 535 1.147376 TTGTGACCAGGACGTTGGG 59.853 57.895 10.92 5.48 42.76 4.12
547 787 1.987080 AGGGGGCTTAACCTTGATCT 58.013 50.000 0.00 0.00 39.10 2.75
663 911 2.200170 CTGCTACTGTTTTGCGGCCC 62.200 60.000 0.00 0.00 0.00 5.80
670 918 5.376625 TCACCTGAATTCTGCTACTGTTTT 58.623 37.500 7.05 0.00 0.00 2.43
706 954 4.379394 GCTGGCAGTTTCAATTATCGTCAA 60.379 41.667 17.16 0.00 0.00 3.18
728 976 3.460854 GAGGCCCGTCTACGTACGC 62.461 68.421 16.72 0.00 41.51 4.42
744 992 4.266714 TCCCCGTTTTTAATTAGCCAGAG 58.733 43.478 0.00 0.00 0.00 3.35
745 993 4.019141 TCTCCCCGTTTTTAATTAGCCAGA 60.019 41.667 0.00 0.00 0.00 3.86
789 1037 1.237285 ACGCAGAAATGGGCAGACAC 61.237 55.000 0.00 0.00 0.00 3.67
799 1047 1.148310 CGTTCTGGTCACGCAGAAAT 58.852 50.000 9.51 0.00 38.90 2.17
827 1075 5.143376 TCCACTACAGTACTAGTTTTGGC 57.857 43.478 0.00 0.00 0.00 4.52
838 1086 4.639310 GCAAGTAGCTACTCCACTACAGTA 59.361 45.833 26.21 0.00 41.01 2.74
839 1087 3.444388 GCAAGTAGCTACTCCACTACAGT 59.556 47.826 26.21 4.99 41.01 3.55
840 1088 4.035278 GCAAGTAGCTACTCCACTACAG 57.965 50.000 26.21 10.10 41.01 2.74
905 1153 1.515521 CCAACTTGGAAGCGGTCACC 61.516 60.000 0.92 4.22 40.96 4.02
912 1160 1.531602 ACAGGCCCAACTTGGAAGC 60.532 57.895 9.61 5.02 40.96 3.86
914 1162 1.152567 CCACAGGCCCAACTTGGAA 60.153 57.895 9.61 0.00 40.96 3.53
939 1202 1.949525 CCCTTGCGCTTGCTTATACAT 59.050 47.619 9.73 0.00 40.12 2.29
986 1250 4.505039 GCGGATCCATCCCTTAGTGTTATT 60.505 45.833 13.41 0.00 44.24 1.40
1032 1307 2.102438 TTGAAGCGGCATGAGCTCG 61.102 57.895 15.00 0.00 45.31 5.03
1070 1345 0.250727 GTTGCTGCCCTGGTAAGTCA 60.251 55.000 0.00 0.00 0.00 3.41
1072 1347 1.302511 CGTTGCTGCCCTGGTAAGT 60.303 57.895 0.00 0.00 0.00 2.24
1074 1349 2.033448 CCGTTGCTGCCCTGGTAA 59.967 61.111 0.00 0.00 0.00 2.85
1079 1354 3.650298 ATCATGCCGTTGCTGCCCT 62.650 57.895 0.00 0.00 38.71 5.19
1090 1365 0.598419 TCGCTGATCGTCATCATGCC 60.598 55.000 0.00 0.00 38.42 4.40
1133 1411 3.368190 CTCTCCTCGGCAGTGCAGG 62.368 68.421 18.61 16.06 0.00 4.85
1163 1441 1.670967 GCTGAAATGGCCAGACAAAGC 60.671 52.381 13.05 12.80 33.65 3.51
1171 1449 2.681064 GGGCTGCTGAAATGGCCA 60.681 61.111 8.56 8.56 45.68 5.36
1172 1450 2.062177 ATGGGCTGCTGAAATGGCC 61.062 57.895 0.00 0.00 45.24 5.36
1219 1518 4.760047 CTCCTGGTTCGGCGGGTG 62.760 72.222 7.21 0.00 0.00 4.61
1221 1520 3.952628 GAACTCCTGGTTCGGCGGG 62.953 68.421 7.21 0.00 43.75 6.13
1222 1521 2.434359 GAACTCCTGGTTCGGCGG 60.434 66.667 7.21 0.00 43.75 6.13
1228 1527 6.060136 GGTAGTTAAAGTTGAACTCCTGGTT 58.940 40.000 9.01 0.00 38.16 3.67
1245 1544 2.352421 GCACACTTCGCTCAGGTAGTTA 60.352 50.000 0.00 0.00 0.00 2.24
1283 1582 1.997874 GCAGGAGGGTCAGGGATGT 60.998 63.158 0.00 0.00 0.00 3.06
1328 1627 4.475135 GGGGAAGAGTGAGCGGCC 62.475 72.222 0.00 0.00 0.00 6.13
1394 1693 3.642741 ATCCCCAAGCTCTCCCCGT 62.643 63.158 0.00 0.00 0.00 5.28
1406 1705 1.228228 GGCATGCTTCTCATCCCCA 59.772 57.895 18.92 0.00 31.79 4.96
1430 1729 4.631740 TCTCTGGGTGGGTGCCGA 62.632 66.667 0.00 0.00 0.00 5.54
1443 1742 4.275524 GCGTTGAGCTTGCTCTCT 57.724 55.556 21.17 0.00 44.04 3.10
1590 1889 7.591795 AGTCGCAGATAACTCGATATACAAAAG 59.408 37.037 0.00 0.00 40.67 2.27
1593 1892 6.371389 CAGTCGCAGATAACTCGATATACAA 58.629 40.000 0.00 0.00 40.67 2.41
1604 1903 1.321743 CAACTCGCAGTCGCAGATAAC 59.678 52.381 0.00 0.00 40.67 1.89
1612 1911 2.022129 GGTCCACAACTCGCAGTCG 61.022 63.158 0.00 0.00 0.00 4.18
1615 1914 0.249868 TGAAGGTCCACAACTCGCAG 60.250 55.000 0.00 0.00 0.00 5.18
1616 1915 0.396435 ATGAAGGTCCACAACTCGCA 59.604 50.000 0.00 0.00 0.00 5.10
1617 1916 1.523758 AATGAAGGTCCACAACTCGC 58.476 50.000 0.00 0.00 0.00 5.03
1618 1917 5.880054 AATTAATGAAGGTCCACAACTCG 57.120 39.130 0.00 0.00 0.00 4.18
1619 1918 6.599638 AGCTAATTAATGAAGGTCCACAACTC 59.400 38.462 0.00 0.00 0.00 3.01
1620 1919 6.485171 AGCTAATTAATGAAGGTCCACAACT 58.515 36.000 0.00 0.00 0.00 3.16
1642 1941 8.215132 CGATCGGTTAATTAGATCTAAACAAGC 58.785 37.037 18.79 20.05 38.78 4.01
1644 1943 9.976511 ATCGATCGGTTAATTAGATCTAAACAA 57.023 29.630 18.79 12.43 38.78 2.83
1701 2000 1.006281 ACGTAGTCTATGGTGTCCCCA 59.994 52.381 4.13 0.00 44.24 4.96
1818 2117 3.125573 CTCGTCGGCGTCTCCTCA 61.126 66.667 10.18 0.00 39.49 3.86
1901 2200 2.342279 CGGGGTTTGTCGAGCAGA 59.658 61.111 0.00 0.00 0.00 4.26
1960 2259 0.035317 ACGCACTGCTTGATCTCCAA 59.965 50.000 0.00 0.00 0.00 3.53
1969 2268 1.227263 AACTCACGACGCACTGCTT 60.227 52.632 0.00 0.00 0.00 3.91
2038 2337 9.440761 ACTTAGAGATGGGTACTATTTCAGAAT 57.559 33.333 0.00 0.00 32.96 2.40
2096 2395 1.594194 GCCGTGAATGGACATTGGCA 61.594 55.000 15.81 2.28 40.94 4.92
2124 2428 0.252103 TCTTCCCTTCCGCCTACACT 60.252 55.000 0.00 0.00 0.00 3.55
2192 2496 1.382146 CACCTTCCCCCGTAGCCTA 60.382 63.158 0.00 0.00 0.00 3.93
2450 2756 4.767255 CACCGGGCCTCAGAGTGC 62.767 72.222 6.32 0.00 0.00 4.40
2457 2763 1.079336 GTGAGTAACACCGGGCCTC 60.079 63.158 6.32 3.77 43.05 4.70
2635 4458 6.547880 GTCCTCCTAACTATCAGACATGAGAA 59.452 42.308 0.00 0.00 39.29 2.87
2706 4529 5.895534 ACGAAAGTCATAGAGGGTTATGGTA 59.104 40.000 0.00 0.00 44.19 3.25
2744 4567 1.003233 CGGGTTTTAGGTGCCTCTCTT 59.997 52.381 0.00 0.00 0.00 2.85
2781 4604 7.672983 ATTCATCGTTTGTAACAGAAGACAT 57.327 32.000 0.00 0.00 0.00 3.06
2788 4611 6.086222 CCTTGGAATTCATCGTTTGTAACAG 58.914 40.000 7.93 0.00 0.00 3.16
2794 4617 2.493278 AGCCCTTGGAATTCATCGTTTG 59.507 45.455 7.93 0.00 0.00 2.93
2809 4632 3.829601 CCAGATCTTATCGACTAGCCCTT 59.170 47.826 0.00 0.00 0.00 3.95
2867 4690 2.847327 TTGGAGGAGAGCTTGTGAAG 57.153 50.000 0.00 0.00 0.00 3.02
2868 4691 3.328931 AGATTTGGAGGAGAGCTTGTGAA 59.671 43.478 0.00 0.00 0.00 3.18
2916 5929 7.124573 TCTCTACAATAGTGGTACATGCATT 57.875 36.000 0.00 0.00 44.52 3.56
2917 5930 6.731292 TCTCTACAATAGTGGTACATGCAT 57.269 37.500 0.00 0.00 44.52 3.96
2918 5931 6.538945 TTCTCTACAATAGTGGTACATGCA 57.461 37.500 0.00 0.00 44.52 3.96
2919 5932 7.495934 ACAATTCTCTACAATAGTGGTACATGC 59.504 37.037 0.00 0.00 44.52 4.06
2920 5933 8.948631 ACAATTCTCTACAATAGTGGTACATG 57.051 34.615 0.00 0.00 44.52 3.21
2939 5952 6.183359 GGCATTTCACGAACATGTTACAATTC 60.183 38.462 11.95 0.00 0.00 2.17
2955 5968 2.362077 ACTCCTTTGTGTGGCATTTCAC 59.638 45.455 0.00 0.00 38.09 3.18
2985 5998 6.792326 TGTACAGGTACATCTAAGAACATCG 58.208 40.000 8.14 0.00 40.77 3.84
3016 6029 4.450757 TGTACATCGAATGACACCAAACTG 59.549 41.667 0.00 0.00 0.00 3.16
3017 6030 4.637276 TGTACATCGAATGACACCAAACT 58.363 39.130 0.00 0.00 0.00 2.66
3029 6042 5.351189 CACAACCATCTGATTGTACATCGAA 59.649 40.000 0.00 0.00 36.92 3.71
3032 6045 6.500684 AACACAACCATCTGATTGTACATC 57.499 37.500 0.00 0.00 36.92 3.06
3061 6074 3.199727 TGGCACTCATATTAAGTCCTGCA 59.800 43.478 0.00 0.00 0.00 4.41
3062 6075 3.808728 TGGCACTCATATTAAGTCCTGC 58.191 45.455 0.00 0.00 0.00 4.85
3063 6076 5.824624 ACATTGGCACTCATATTAAGTCCTG 59.175 40.000 0.00 0.00 0.00 3.86
3089 6102 5.559991 CGGAAATGACTCATTGTTTCGTCAA 60.560 40.000 4.99 0.00 39.52 3.18
3112 6125 2.919666 ATCAGGAATTCGGCAAAACG 57.080 45.000 0.00 0.00 0.00 3.60
3134 6147 5.973899 TTGCTAAAAGTATGGCATGTTGA 57.026 34.783 10.98 0.00 34.59 3.18
3138 6151 5.002464 AGCTTTGCTAAAAGTATGGCATG 57.998 39.130 10.98 0.00 44.02 4.06
3147 6160 3.581024 TGGCATGAGCTTTGCTAAAAG 57.419 42.857 18.54 0.00 44.81 2.27
3152 6165 3.412237 AATTTTGGCATGAGCTTTGCT 57.588 38.095 18.54 0.00 43.88 3.91
3167 6180 7.712204 ATACAATACCTCCACCGAAAATTTT 57.288 32.000 2.28 2.28 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.