Multiple sequence alignment - TraesCS3B01G070300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G070300 chr3B 100.000 5440 0 0 1 5440 42148602 42143163 0.000000e+00 10046.0
1 TraesCS3B01G070300 chr3B 93.519 108 7 0 4336 4443 42155721 42155614 1.570000e-35 161.0
2 TraesCS3B01G070300 chr3B 84.906 159 20 3 3950 4104 42155972 42155814 2.030000e-34 158.0
3 TraesCS3B01G070300 chr3B 90.741 54 4 1 215 268 379727625 379727677 2.720000e-08 71.3
4 TraesCS3B01G070300 chr3A 95.279 3283 98 27 1643 4894 32647715 32650971 0.000000e+00 5151.0
5 TraesCS3B01G070300 chr3A 95.018 3292 98 28 1643 4894 32715441 32718706 0.000000e+00 5114.0
6 TraesCS3B01G070300 chr3A 95.303 2661 81 17 2257 4894 32728199 32730838 0.000000e+00 4181.0
7 TraesCS3B01G070300 chr3A 93.823 1457 69 8 3574 5023 32864000 32865442 0.000000e+00 2172.0
8 TraesCS3B01G070300 chr3A 93.495 1153 49 9 2064 3196 32826008 32827154 0.000000e+00 1690.0
9 TraesCS3B01G070300 chr3A 96.727 825 17 6 3392 4213 32827636 32828453 0.000000e+00 1365.0
10 TraesCS3B01G070300 chr3A 92.882 857 38 8 4210 5063 32828710 32829546 0.000000e+00 1223.0
11 TraesCS3B01G070300 chr3A 89.045 785 26 17 669 1430 32646590 32647337 0.000000e+00 918.0
12 TraesCS3B01G070300 chr3A 92.192 666 20 11 788 1430 32714407 32715063 0.000000e+00 913.0
13 TraesCS3B01G070300 chr3A 88.439 692 40 18 4782 5440 32867378 32868062 0.000000e+00 798.0
14 TraesCS3B01G070300 chr3A 92.000 450 27 6 5000 5440 32865445 32865894 1.660000e-174 623.0
15 TraesCS3B01G070300 chr3A 91.104 326 23 4 4904 5225 32650936 32651259 2.330000e-118 436.0
16 TraesCS3B01G070300 chr3A 91.104 326 23 4 4904 5225 32718671 32718994 2.330000e-118 436.0
17 TraesCS3B01G070300 chr3A 89.877 326 27 5 4904 5225 32730803 32731126 1.090000e-111 414.0
18 TraesCS3B01G070300 chr3A 95.528 246 10 1 5195 5440 32651258 32651502 5.110000e-105 392.0
19 TraesCS3B01G070300 chr3A 95.528 246 10 1 5195 5440 32718993 32719237 5.110000e-105 392.0
20 TraesCS3B01G070300 chr3A 94.309 246 13 1 5195 5440 32731125 32731369 5.140000e-100 375.0
21 TraesCS3B01G070300 chr3A 91.870 246 16 3 5195 5440 32850599 32850840 1.880000e-89 340.0
22 TraesCS3B01G070300 chr3A 93.333 210 10 3 3198 3407 32827394 32827599 1.900000e-79 307.0
23 TraesCS3B01G070300 chr3A 86.154 260 28 3 1 252 32709321 32709580 1.930000e-69 274.0
24 TraesCS3B01G070300 chr3A 85.057 261 30 4 1 252 32646254 32646514 1.940000e-64 257.0
25 TraesCS3B01G070300 chr3A 89.130 184 19 1 3749 3931 32642104 32642287 1.520000e-55 228.0
26 TraesCS3B01G070300 chr3A 95.205 146 3 2 1414 1556 32647373 32647517 1.520000e-55 228.0
27 TraesCS3B01G070300 chr3A 89.130 184 19 1 3749 3931 32705843 32706026 1.520000e-55 228.0
28 TraesCS3B01G070300 chr3A 95.205 146 3 2 1414 1556 32715099 32715243 1.520000e-55 228.0
29 TraesCS3B01G070300 chr3A 88.889 153 12 1 264 411 233584138 233583986 3.350000e-42 183.0
30 TraesCS3B01G070300 chr3A 94.231 104 3 3 1988 2090 290447723 290447824 7.300000e-34 156.0
31 TraesCS3B01G070300 chr3A 91.667 108 9 0 4336 4443 32642606 32642713 3.390000e-32 150.0
32 TraesCS3B01G070300 chr3A 91.667 108 9 0 4336 4443 32706345 32706452 3.390000e-32 150.0
33 TraesCS3B01G070300 chr3A 100.000 39 0 0 408 446 424454734 424454772 7.560000e-09 73.1
34 TraesCS3B01G070300 chr3A 100.000 28 0 0 754 781 32714383 32714410 1.000000e-02 52.8
35 TraesCS3B01G070300 chr3D 96.518 2843 80 11 2185 5023 23674400 23677227 0.000000e+00 4684.0
36 TraesCS3B01G070300 chr3D 91.844 895 37 15 673 1556 23672946 23673815 0.000000e+00 1216.0
37 TraesCS3B01G070300 chr3D 95.066 527 23 3 1550 2073 23673874 23674400 0.000000e+00 826.0
38 TraesCS3B01G070300 chr3D 92.837 363 19 3 5082 5440 23677561 23677920 2.250000e-143 520.0
39 TraesCS3B01G070300 chr3D 87.330 221 27 1 1 221 23672523 23672742 9.050000e-63 252.0
40 TraesCS3B01G070300 chr3D 89.071 183 19 1 3749 3930 23668562 23668744 5.480000e-55 226.0
41 TraesCS3B01G070300 chr3D 91.275 149 10 2 266 411 400337237 400337089 3.320000e-47 200.0
42 TraesCS3B01G070300 chr3D 84.706 170 20 5 3950 4115 23668813 23668980 1.210000e-36 165.0
43 TraesCS3B01G070300 chr3D 85.987 157 17 5 8 162 476503739 476503892 4.360000e-36 163.0
44 TraesCS3B01G070300 chr3D 93.519 108 7 0 4336 4443 23669064 23669171 1.570000e-35 161.0
45 TraesCS3B01G070300 chr3D 93.478 92 5 1 448 539 23672745 23672835 9.500000e-28 135.0
46 TraesCS3B01G070300 chr3D 95.122 82 4 0 5000 5081 23677230 23677311 4.420000e-26 130.0
47 TraesCS3B01G070300 chr3D 78.818 203 29 12 5238 5432 348273276 348273472 2.060000e-24 124.0
48 TraesCS3B01G070300 chr6B 89.933 149 14 1 264 411 474320135 474319987 2.000000e-44 191.0
49 TraesCS3B01G070300 chr6B 89.189 148 13 1 264 411 347460128 347459984 1.200000e-41 182.0
50 TraesCS3B01G070300 chr6B 97.436 39 1 0 408 446 14339485 14339447 3.520000e-07 67.6
51 TraesCS3B01G070300 chr4A 82.857 210 34 1 5233 5440 144023980 144023771 2.590000e-43 187.0
52 TraesCS3B01G070300 chr4A 87.500 160 14 3 257 411 476748089 476748247 4.330000e-41 180.0
53 TraesCS3B01G070300 chr4A 92.857 56 2 2 214 267 601204542 601204597 4.520000e-11 80.5
54 TraesCS3B01G070300 chr1B 89.262 149 15 1 264 411 560743431 560743579 9.310000e-43 185.0
55 TraesCS3B01G070300 chr1B 89.116 147 16 0 265 411 401309934 401309788 3.350000e-42 183.0
56 TraesCS3B01G070300 chr1B 92.727 55 4 0 392 446 585542091 585542145 4.520000e-11 80.5
57 TraesCS3B01G070300 chr7D 88.514 148 15 1 264 411 144450845 144450700 1.560000e-40 178.0
58 TraesCS3B01G070300 chr7D 80.556 144 24 4 6 147 189251718 189251859 2.070000e-19 108.0
59 TraesCS3B01G070300 chr7D 94.545 55 3 0 214 268 365508661 365508607 9.710000e-13 86.1
60 TraesCS3B01G070300 chr7D 92.727 55 4 0 214 268 28032391 28032445 4.520000e-11 80.5
61 TraesCS3B01G070300 chr7D 92.727 55 4 0 214 268 69082513 69082567 4.520000e-11 80.5
62 TraesCS3B01G070300 chr7D 88.333 60 7 0 215 274 390929732 390929791 7.560000e-09 73.1
63 TraesCS3B01G070300 chr4B 87.013 154 20 0 259 412 9958781 9958628 2.010000e-39 174.0
64 TraesCS3B01G070300 chr4B 94.444 36 2 0 617 652 47448019 47448054 7.610000e-04 56.5
65 TraesCS3B01G070300 chr4D 96.939 98 1 2 1994 2090 113153594 113153498 4.360000e-36 163.0
66 TraesCS3B01G070300 chr4D 89.855 69 4 3 1991 2058 500419888 500419822 9.710000e-13 86.1
67 TraesCS3B01G070300 chr4D 92.857 56 3 1 214 268 28237899 28237844 4.520000e-11 80.5
68 TraesCS3B01G070300 chr1D 89.147 129 11 3 6 132 100899729 100899602 2.030000e-34 158.0
69 TraesCS3B01G070300 chr1D 94.845 97 4 1 1995 2090 160717126 160717030 3.390000e-32 150.0
70 TraesCS3B01G070300 chr1D 94.000 50 1 2 1996 2044 192587544 192587496 2.100000e-09 75.0
71 TraesCS3B01G070300 chr1D 97.059 34 1 0 619 652 40901328 40901361 2.120000e-04 58.4
72 TraesCS3B01G070300 chr5B 86.014 143 18 2 6 147 455502000 455502141 9.440000e-33 152.0
73 TraesCS3B01G070300 chr5B 97.297 37 1 0 410 446 285935696 285935732 4.550000e-06 63.9
74 TraesCS3B01G070300 chr2B 95.789 95 1 3 1997 2090 296018079 296017987 3.390000e-32 150.0
75 TraesCS3B01G070300 chr2B 81.081 185 26 9 6 183 79033585 79033403 7.350000e-29 139.0
76 TraesCS3B01G070300 chr2B 88.679 106 10 2 6 110 704581870 704581766 1.590000e-25 128.0
77 TraesCS3B01G070300 chr5D 92.079 101 5 3 1991 2090 12223614 12223516 7.350000e-29 139.0
78 TraesCS3B01G070300 chr5D 95.455 44 2 0 403 446 254845488 254845445 2.720000e-08 71.3
79 TraesCS3B01G070300 chr5D 91.489 47 1 3 1994 2038 93068509 93068554 1.640000e-05 62.1
80 TraesCS3B01G070300 chr2A 83.444 151 20 5 6 154 158181579 158181726 9.500000e-28 135.0
81 TraesCS3B01G070300 chr2A 100.000 28 0 0 741 768 625294301 625294328 1.000000e-02 52.8
82 TraesCS3B01G070300 chrUn 89.524 105 9 2 6 109 87108214 87108111 1.230000e-26 132.0
83 TraesCS3B01G070300 chrUn 100.000 28 0 0 617 644 16538735 16538708 1.000000e-02 52.8
84 TraesCS3B01G070300 chr2D 91.398 93 6 2 1999 2090 33312790 33312699 5.720000e-25 126.0
85 TraesCS3B01G070300 chr2D 97.059 34 1 0 619 652 615339919 615339952 2.120000e-04 58.4
86 TraesCS3B01G070300 chr5A 91.429 70 3 3 1994 2061 86666051 86666119 5.800000e-15 93.5
87 TraesCS3B01G070300 chr5A 94.118 34 2 0 619 652 617128293 617128260 1.000000e-02 52.8
88 TraesCS3B01G070300 chr1A 100.000 39 0 0 408 446 237513251 237513213 7.560000e-09 73.1
89 TraesCS3B01G070300 chr1A 94.444 36 2 0 617 652 152453926 152453961 7.610000e-04 56.5
90 TraesCS3B01G070300 chr1A 100.000 28 0 0 619 646 593545443 593545416 1.000000e-02 52.8
91 TraesCS3B01G070300 chr6D 90.566 53 3 2 408 458 32920222 32920274 9.780000e-08 69.4
92 TraesCS3B01G070300 chr6D 97.436 39 1 0 408 446 455896047 455896085 3.520000e-07 67.6
93 TraesCS3B01G070300 chr7B 97.436 39 1 0 408 446 747593550 747593512 3.520000e-07 67.6
94 TraesCS3B01G070300 chr7A 97.059 34 1 0 619 652 502468887 502468920 2.120000e-04 58.4
95 TraesCS3B01G070300 chr7A 100.000 28 0 0 741 768 688855060 688855087 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G070300 chr3B 42143163 42148602 5439 True 10046.000000 10046 100.000000 1 5440 1 chr3B.!!$R1 5439
1 TraesCS3B01G070300 chr3A 32728199 32731369 3170 False 1656.666667 4181 93.163000 2257 5440 3 chr3A.!!$F7 3183
2 TraesCS3B01G070300 chr3A 32864000 32868062 4062 False 1197.666667 2172 91.420667 3574 5440 3 chr3A.!!$F9 1866
3 TraesCS3B01G070300 chr3A 32714383 32719237 4854 False 1189.300000 5114 94.841167 754 5440 6 chr3A.!!$F6 4686
4 TraesCS3B01G070300 chr3A 32826008 32829546 3538 False 1146.250000 1690 94.109250 2064 5063 4 chr3A.!!$F8 2999
5 TraesCS3B01G070300 chr3A 32642104 32651502 9398 False 970.000000 5151 91.501875 1 5440 8 chr3A.!!$F4 5439
6 TraesCS3B01G070300 chr3A 32705843 32709580 3737 False 217.333333 274 88.983667 1 4443 3 chr3A.!!$F5 4442
7 TraesCS3B01G070300 chr3D 23668562 23677920 9358 False 831.500000 4684 91.949100 1 5440 10 chr3D.!!$F3 5439

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 4307 0.392998 TTCCATCTTGAAGGAGCCGC 60.393 55.0 0.00 0.0 34.91 6.53 F
1239 5564 0.693049 AAGATCTTCCTTGGGTGCGT 59.307 50.0 0.88 0.0 0.00 5.24 F
1492 5873 0.445436 CTTCGGTGATGACAAGCAGC 59.555 55.0 0.00 0.0 36.86 5.25 F
3232 8050 0.310854 CAGTCGCACAACCCCTTTTC 59.689 55.0 0.00 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1350 5676 0.036010 CCCAACTCCATCGTCTTGCT 60.036 55.0 0.00 0.00 0.00 3.91 R
3217 8035 1.106944 AGGTGAAAAGGGGTTGTGCG 61.107 55.0 0.00 0.00 0.00 5.34 R
3424 8294 5.066764 CCGTACCACCCAAGTATTTAAATGG 59.933 44.0 11.05 4.85 0.00 3.16 R
4924 12447 0.388659 GATGCAGGCAACCAAACACA 59.611 50.0 0.00 0.00 37.17 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 4307 0.392998 TTCCATCTTGAAGGAGCCGC 60.393 55.000 0.00 0.00 34.91 6.53
71 4353 3.869246 ACACAAACACTAACAAGACTCGG 59.131 43.478 0.00 0.00 0.00 4.63
112 4404 4.717313 GTCCCACCGGCAAGGGTC 62.717 72.222 22.47 15.54 46.96 4.46
147 4439 2.125673 CACGACCCTAAGGCCACG 60.126 66.667 5.01 1.28 36.11 4.94
148 4440 2.283388 ACGACCCTAAGGCCACGA 60.283 61.111 5.01 0.00 36.11 4.35
160 4452 1.135731 GCCACGAGAGACAGAGACG 59.864 63.158 0.00 0.00 0.00 4.18
168 4460 1.000993 AGACAGAGACGGGGCAGAT 59.999 57.895 0.00 0.00 0.00 2.90
222 4514 7.455008 TGGAAGTTTAGATCAGGGATATACTCC 59.545 40.741 0.00 0.00 44.11 3.85
239 4531 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
252 4544 7.041644 CGTCCCAAAATAAGTGACTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
278 4570 4.797800 AAAACTAGTACTTCCTCCGTCC 57.202 45.455 0.00 0.00 0.00 4.79
279 4571 3.735720 AACTAGTACTTCCTCCGTCCT 57.264 47.619 0.00 0.00 0.00 3.85
280 4572 4.851639 AACTAGTACTTCCTCCGTCCTA 57.148 45.455 0.00 0.00 0.00 2.94
281 4573 4.851639 ACTAGTACTTCCTCCGTCCTAA 57.148 45.455 0.00 0.00 0.00 2.69
282 4574 5.184892 ACTAGTACTTCCTCCGTCCTAAA 57.815 43.478 0.00 0.00 0.00 1.85
283 4575 5.574188 ACTAGTACTTCCTCCGTCCTAAAA 58.426 41.667 0.00 0.00 0.00 1.52
284 4576 6.193504 ACTAGTACTTCCTCCGTCCTAAAAT 58.806 40.000 0.00 0.00 0.00 1.82
285 4577 6.666980 ACTAGTACTTCCTCCGTCCTAAAATT 59.333 38.462 0.00 0.00 0.00 1.82
286 4578 5.975282 AGTACTTCCTCCGTCCTAAAATTC 58.025 41.667 0.00 0.00 0.00 2.17
287 4579 5.720520 AGTACTTCCTCCGTCCTAAAATTCT 59.279 40.000 0.00 0.00 0.00 2.40
288 4580 5.500546 ACTTCCTCCGTCCTAAAATTCTT 57.499 39.130 0.00 0.00 0.00 2.52
289 4581 5.246307 ACTTCCTCCGTCCTAAAATTCTTG 58.754 41.667 0.00 0.00 0.00 3.02
290 4582 4.903045 TCCTCCGTCCTAAAATTCTTGT 57.097 40.909 0.00 0.00 0.00 3.16
291 4583 4.828829 TCCTCCGTCCTAAAATTCTTGTC 58.171 43.478 0.00 0.00 0.00 3.18
292 4584 4.530946 TCCTCCGTCCTAAAATTCTTGTCT 59.469 41.667 0.00 0.00 0.00 3.41
293 4585 5.012768 TCCTCCGTCCTAAAATTCTTGTCTT 59.987 40.000 0.00 0.00 0.00 3.01
294 4586 6.211986 TCCTCCGTCCTAAAATTCTTGTCTTA 59.788 38.462 0.00 0.00 0.00 2.10
295 4587 6.535508 CCTCCGTCCTAAAATTCTTGTCTTAG 59.464 42.308 0.00 0.00 0.00 2.18
296 4588 7.235935 TCCGTCCTAAAATTCTTGTCTTAGA 57.764 36.000 0.00 0.00 0.00 2.10
297 4589 7.848128 TCCGTCCTAAAATTCTTGTCTTAGAT 58.152 34.615 0.00 0.00 0.00 1.98
298 4590 8.319146 TCCGTCCTAAAATTCTTGTCTTAGATT 58.681 33.333 0.00 0.00 0.00 2.40
299 4591 8.947115 CCGTCCTAAAATTCTTGTCTTAGATTT 58.053 33.333 0.00 0.00 0.00 2.17
300 4592 9.760660 CGTCCTAAAATTCTTGTCTTAGATTTG 57.239 33.333 0.00 0.00 0.00 2.32
311 4603 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
312 4604 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
314 4606 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
315 4607 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
322 4614 9.640963 ATTTGTCTAAATACGGATGTATCTAGC 57.359 33.333 0.00 0.00 40.42 3.42
323 4615 7.997773 TGTCTAAATACGGATGTATCTAGCT 57.002 36.000 0.00 0.00 40.42 3.32
324 4616 9.511272 TTGTCTAAATACGGATGTATCTAGCTA 57.489 33.333 0.00 0.00 40.42 3.32
325 4617 9.682465 TGTCTAAATACGGATGTATCTAGCTAT 57.318 33.333 0.00 0.00 40.42 2.97
365 4657 6.692486 ACATCCGTATCTAGACAAATCATCC 58.308 40.000 0.00 0.00 0.00 3.51
366 4658 5.372547 TCCGTATCTAGACAAATCATCCG 57.627 43.478 0.00 0.00 0.00 4.18
367 4659 4.825634 TCCGTATCTAGACAAATCATCCGT 59.174 41.667 0.00 0.00 0.00 4.69
368 4660 5.999600 TCCGTATCTAGACAAATCATCCGTA 59.000 40.000 0.00 0.00 0.00 4.02
369 4661 6.657966 TCCGTATCTAGACAAATCATCCGTAT 59.342 38.462 0.00 0.00 0.00 3.06
370 4662 6.967767 CCGTATCTAGACAAATCATCCGTATC 59.032 42.308 0.00 0.00 0.00 2.24
371 4663 7.148222 CCGTATCTAGACAAATCATCCGTATCT 60.148 40.741 0.00 0.00 0.00 1.98
372 4664 8.880750 CGTATCTAGACAAATCATCCGTATCTA 58.119 37.037 0.00 0.00 0.00 1.98
375 4667 8.325421 TCTAGACAAATCATCCGTATCTAGAC 57.675 38.462 0.00 0.00 38.68 2.59
376 4668 6.961360 AGACAAATCATCCGTATCTAGACA 57.039 37.500 0.00 0.00 0.00 3.41
377 4669 7.348080 AGACAAATCATCCGTATCTAGACAA 57.652 36.000 0.00 0.00 0.00 3.18
378 4670 7.782049 AGACAAATCATCCGTATCTAGACAAA 58.218 34.615 0.00 0.00 0.00 2.83
379 4671 8.424918 AGACAAATCATCCGTATCTAGACAAAT 58.575 33.333 0.00 0.00 0.00 2.32
380 4672 8.594881 ACAAATCATCCGTATCTAGACAAATC 57.405 34.615 0.00 0.00 0.00 2.17
381 4673 8.424918 ACAAATCATCCGTATCTAGACAAATCT 58.575 33.333 0.00 0.00 39.15 2.40
382 4674 9.914131 CAAATCATCCGTATCTAGACAAATCTA 57.086 33.333 0.00 0.00 36.29 1.98
385 4677 8.919777 TCATCCGTATCTAGACAAATCTAAGA 57.080 34.615 0.00 0.00 36.98 2.10
386 4678 8.784994 TCATCCGTATCTAGACAAATCTAAGAC 58.215 37.037 0.00 0.00 36.98 3.01
387 4679 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
388 4680 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
389 4681 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
390 4682 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
403 4695 9.720769 AATCTAAGACAAGAATTTTAAGACGGA 57.279 29.630 0.00 0.00 0.00 4.69
404 4696 8.758633 TCTAAGACAAGAATTTTAAGACGGAG 57.241 34.615 0.00 0.00 0.00 4.63
405 4697 6.803154 AAGACAAGAATTTTAAGACGGAGG 57.197 37.500 0.00 0.00 0.00 4.30
406 4698 6.110411 AGACAAGAATTTTAAGACGGAGGA 57.890 37.500 0.00 0.00 0.00 3.71
407 4699 6.531021 AGACAAGAATTTTAAGACGGAGGAA 58.469 36.000 0.00 0.00 0.00 3.36
408 4700 6.651225 AGACAAGAATTTTAAGACGGAGGAAG 59.349 38.462 0.00 0.00 0.00 3.46
409 4701 6.296803 ACAAGAATTTTAAGACGGAGGAAGT 58.703 36.000 0.00 0.00 0.00 3.01
410 4702 7.447594 ACAAGAATTTTAAGACGGAGGAAGTA 58.552 34.615 0.00 0.00 0.00 2.24
411 4703 8.101419 ACAAGAATTTTAAGACGGAGGAAGTAT 58.899 33.333 0.00 0.00 0.00 2.12
412 4704 9.595823 CAAGAATTTTAAGACGGAGGAAGTATA 57.404 33.333 0.00 0.00 0.00 1.47
416 4708 9.955102 AATTTTAAGACGGAGGAAGTATAAAGT 57.045 29.630 0.00 0.00 0.00 2.66
417 4709 9.955102 ATTTTAAGACGGAGGAAGTATAAAGTT 57.045 29.630 0.00 0.00 0.00 2.66
418 4710 8.767478 TTTAAGACGGAGGAAGTATAAAGTTG 57.233 34.615 0.00 0.00 0.00 3.16
437 4729 6.771188 AGTTGAGTCACTTATTTTGAGACG 57.229 37.500 0.00 0.00 34.56 4.18
438 4730 5.696724 AGTTGAGTCACTTATTTTGAGACGG 59.303 40.000 0.00 0.00 34.56 4.79
439 4731 5.462530 TGAGTCACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 34.56 4.69
440 4732 5.470368 TGAGTCACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 34.56 4.63
441 4733 4.822026 AGTCACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 34.56 4.30
442 4734 3.933332 GTCACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
443 4735 3.835978 TCACTTATTTTGAGACGGAGGGA 59.164 43.478 0.00 0.00 0.00 4.20
444 4736 4.081642 TCACTTATTTTGAGACGGAGGGAG 60.082 45.833 0.00 0.00 0.00 4.30
445 4737 3.838903 ACTTATTTTGAGACGGAGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
446 4738 2.770164 ATTTTGAGACGGAGGGAGTG 57.230 50.000 0.00 0.00 0.00 3.51
449 4741 1.185618 TTGAGACGGAGGGAGTGTGG 61.186 60.000 0.00 0.00 0.00 4.17
454 4746 1.345415 GACGGAGGGAGTGTGGTTTAA 59.655 52.381 0.00 0.00 0.00 1.52
468 4760 6.998673 AGTGTGGTTTAAGAGCAATAAAGACT 59.001 34.615 0.00 0.00 37.53 3.24
494 4786 6.301108 TCAACAATTTACGTAAATGAGACGC 58.699 36.000 29.06 0.00 44.14 5.19
527 4819 2.433868 TCGCTAAAAACGTGAGAGCT 57.566 45.000 9.46 0.00 0.00 4.09
539 4831 5.840940 ACGTGAGAGCTGTTACAATTTAC 57.159 39.130 6.59 0.00 0.00 2.01
540 4832 5.539048 ACGTGAGAGCTGTTACAATTTACT 58.461 37.500 6.59 0.00 0.00 2.24
541 4833 5.634020 ACGTGAGAGCTGTTACAATTTACTC 59.366 40.000 6.59 0.00 0.00 2.59
542 4834 5.864474 CGTGAGAGCTGTTACAATTTACTCT 59.136 40.000 6.59 0.00 35.80 3.24
544 4836 7.702772 CGTGAGAGCTGTTACAATTTACTCTAT 59.297 37.037 6.59 0.00 33.37 1.98
545 4837 9.026074 GTGAGAGCTGTTACAATTTACTCTATC 57.974 37.037 0.43 0.00 33.37 2.08
546 4838 8.972127 TGAGAGCTGTTACAATTTACTCTATCT 58.028 33.333 0.00 0.00 33.37 1.98
547 4839 9.243637 GAGAGCTGTTACAATTTACTCTATCTG 57.756 37.037 0.00 0.00 33.37 2.90
549 4841 8.934507 AGCTGTTACAATTTACTCTATCTGTC 57.065 34.615 0.00 0.00 0.00 3.51
550 4842 7.982354 AGCTGTTACAATTTACTCTATCTGTCC 59.018 37.037 0.00 0.00 0.00 4.02
551 4843 7.224949 GCTGTTACAATTTACTCTATCTGTCCC 59.775 40.741 0.00 0.00 0.00 4.46
552 4844 8.141298 TGTTACAATTTACTCTATCTGTCCCA 57.859 34.615 0.00 0.00 0.00 4.37
553 4845 8.768397 TGTTACAATTTACTCTATCTGTCCCAT 58.232 33.333 0.00 0.00 0.00 4.00
564 4856 9.196139 ACTCTATCTGTCCCATAATATAAGAGC 57.804 37.037 0.00 0.00 0.00 4.09
566 4858 6.859112 ATCTGTCCCATAATATAAGAGCGT 57.141 37.500 0.00 0.00 0.00 5.07
568 4860 7.956328 TCTGTCCCATAATATAAGAGCGTAT 57.044 36.000 0.00 0.00 0.00 3.06
569 4861 8.362464 TCTGTCCCATAATATAAGAGCGTATT 57.638 34.615 0.00 0.00 0.00 1.89
571 4863 8.129496 TGTCCCATAATATAAGAGCGTATTGA 57.871 34.615 0.00 0.00 0.00 2.57
573 4865 8.033038 GTCCCATAATATAAGAGCGTATTGACA 58.967 37.037 0.00 0.00 0.00 3.58
574 4866 8.033038 TCCCATAATATAAGAGCGTATTGACAC 58.967 37.037 0.00 0.00 0.00 3.67
575 4867 8.035394 CCCATAATATAAGAGCGTATTGACACT 58.965 37.037 0.00 0.00 0.00 3.55
581 4873 5.584253 AAGAGCGTATTGACACTAGTGAT 57.416 39.130 29.30 14.56 0.00 3.06
583 4875 6.885952 AGAGCGTATTGACACTAGTGATAT 57.114 37.500 29.30 18.77 0.00 1.63
584 4876 6.673106 AGAGCGTATTGACACTAGTGATATG 58.327 40.000 29.30 20.10 0.00 1.78
585 4877 6.263392 AGAGCGTATTGACACTAGTGATATGT 59.737 38.462 29.30 6.23 0.00 2.29
586 4878 7.444487 AGAGCGTATTGACACTAGTGATATGTA 59.556 37.037 29.30 11.70 0.00 2.29
587 4879 7.937649 AGCGTATTGACACTAGTGATATGTAA 58.062 34.615 29.30 13.48 0.00 2.41
588 4880 8.410912 AGCGTATTGACACTAGTGATATGTAAA 58.589 33.333 29.30 6.29 0.00 2.01
589 4881 9.027129 GCGTATTGACACTAGTGATATGTAAAA 57.973 33.333 29.30 10.78 0.00 1.52
640 4932 8.990163 ACGGTCCCATAATATAAGAATGTTTT 57.010 30.769 0.00 0.00 0.00 2.43
641 4933 9.416284 ACGGTCCCATAATATAAGAATGTTTTT 57.584 29.630 0.00 0.00 0.00 1.94
656 4948 8.463930 AGAATGTTTTTGAAAGTAGTGATGGA 57.536 30.769 0.00 0.00 0.00 3.41
657 4949 8.571336 AGAATGTTTTTGAAAGTAGTGATGGAG 58.429 33.333 0.00 0.00 0.00 3.86
658 4950 6.633500 TGTTTTTGAAAGTAGTGATGGAGG 57.367 37.500 0.00 0.00 0.00 4.30
659 4951 5.534654 TGTTTTTGAAAGTAGTGATGGAGGG 59.465 40.000 0.00 0.00 0.00 4.30
660 4952 5.576563 TTTTGAAAGTAGTGATGGAGGGA 57.423 39.130 0.00 0.00 0.00 4.20
661 4953 4.826274 TTGAAAGTAGTGATGGAGGGAG 57.174 45.455 0.00 0.00 0.00 4.30
662 4954 3.791320 TGAAAGTAGTGATGGAGGGAGT 58.209 45.455 0.00 0.00 0.00 3.85
663 4955 4.942944 TGAAAGTAGTGATGGAGGGAGTA 58.057 43.478 0.00 0.00 0.00 2.59
664 4956 5.338632 TGAAAGTAGTGATGGAGGGAGTAA 58.661 41.667 0.00 0.00 0.00 2.24
665 4957 5.783360 TGAAAGTAGTGATGGAGGGAGTAAA 59.217 40.000 0.00 0.00 0.00 2.01
666 4958 6.443849 TGAAAGTAGTGATGGAGGGAGTAAAT 59.556 38.462 0.00 0.00 0.00 1.40
667 4959 5.878406 AGTAGTGATGGAGGGAGTAAATG 57.122 43.478 0.00 0.00 0.00 2.32
668 4960 5.529289 AGTAGTGATGGAGGGAGTAAATGA 58.471 41.667 0.00 0.00 0.00 2.57
669 4961 5.600484 AGTAGTGATGGAGGGAGTAAATGAG 59.400 44.000 0.00 0.00 0.00 2.90
670 4962 4.366267 AGTGATGGAGGGAGTAAATGAGT 58.634 43.478 0.00 0.00 0.00 3.41
671 4963 4.163078 AGTGATGGAGGGAGTAAATGAGTG 59.837 45.833 0.00 0.00 0.00 3.51
675 4967 3.451178 TGGAGGGAGTAAATGAGTGTAGC 59.549 47.826 0.00 0.00 0.00 3.58
718 5010 7.316544 TCTTTGCGTAAGAATAGGATTTTCC 57.683 36.000 0.00 0.00 39.90 3.13
724 5016 6.128795 GCGTAAGAATAGGATTTTCCGAGATG 60.129 42.308 0.00 0.00 40.61 2.90
777 5069 2.811317 CGAGAGGGCAGCGAACAC 60.811 66.667 0.00 0.00 0.00 3.32
778 5070 2.343758 GAGAGGGCAGCGAACACA 59.656 61.111 0.00 0.00 0.00 3.72
779 5071 2.029844 GAGAGGGCAGCGAACACAC 61.030 63.158 0.00 0.00 0.00 3.82
780 5072 2.280797 GAGGGCAGCGAACACACA 60.281 61.111 0.00 0.00 0.00 3.72
781 5073 2.591715 AGGGCAGCGAACACACAC 60.592 61.111 0.00 0.00 0.00 3.82
782 5074 4.012895 GGGCAGCGAACACACACG 62.013 66.667 0.00 0.00 0.00 4.49
783 5075 3.269347 GGCAGCGAACACACACGT 61.269 61.111 0.00 0.00 0.00 4.49
912 5215 4.081030 GCCGAGTCGTCGTCGTCA 62.081 66.667 12.31 0.00 45.30 4.35
922 5225 2.095282 CGTCGTCATCGTCGTCGT 59.905 61.111 1.33 0.00 41.73 4.34
923 5226 1.922220 CGTCGTCATCGTCGTCGTC 60.922 63.158 1.33 0.00 41.73 4.20
924 5227 1.922220 GTCGTCATCGTCGTCGTCG 60.922 63.158 5.50 5.50 38.33 5.12
925 5228 2.088178 TCGTCATCGTCGTCGTCGA 61.088 57.895 16.35 16.35 41.45 4.20
928 5231 2.098831 TCATCGTCGTCGTCGAGCT 61.099 57.895 18.55 1.82 46.96 4.09
939 5242 2.044352 TCGAGCTCGATCCCCACA 60.044 61.111 33.84 10.40 44.22 4.17
1053 5366 0.923358 TCTCCTCTCCCTCTCTGGTC 59.077 60.000 0.00 0.00 0.00 4.02
1064 5377 2.611292 CCTCTCTGGTCGAATCAATTGC 59.389 50.000 0.00 0.00 0.00 3.56
1140 5464 2.091555 CAGCTCTTAGTCCCCTCCTACT 60.092 54.545 0.00 0.00 0.00 2.57
1164 5488 3.192922 GGATTTCGACCGTGGCCG 61.193 66.667 0.00 0.00 0.00 6.13
1239 5564 0.693049 AAGATCTTCCTTGGGTGCGT 59.307 50.000 0.88 0.00 0.00 5.24
1350 5676 1.600638 CAGATGGCCTCTGTGCAGA 59.399 57.895 18.74 1.69 45.42 4.26
1373 5699 0.833287 AGACGATGGAGTTGGGATGG 59.167 55.000 0.00 0.00 0.00 3.51
1492 5873 0.445436 CTTCGGTGATGACAAGCAGC 59.555 55.000 0.00 0.00 36.86 5.25
1515 5896 0.678048 GACCCAGCTGTGATGAACCC 60.678 60.000 13.81 0.00 0.00 4.11
1584 6030 5.943349 TTCTATCCTATGTTCCAAACGGA 57.057 39.130 0.00 0.00 0.00 4.69
1586 6032 5.205821 TCTATCCTATGTTCCAAACGGAGA 58.794 41.667 0.00 0.00 32.88 3.71
1602 6048 7.378728 CCAAACGGAGACTTATTGTTTTTCTTC 59.621 37.037 0.00 0.00 30.88 2.87
1629 6075 2.094762 ATGCGTTCTTACTGTGGACC 57.905 50.000 0.00 0.00 0.00 4.46
1669 6214 6.265196 TGTTGTTTCATTAGAAGGATGCTTGT 59.735 34.615 3.35 2.29 34.71 3.16
1729 6274 5.464965 TCTGAAAACACTTCTCGTTGTTC 57.535 39.130 0.00 0.00 0.00 3.18
1770 6315 2.819608 GTTAGCATGTTGGTGGTGTGAT 59.180 45.455 0.00 0.00 0.00 3.06
1815 6360 6.074302 CCATATGTACATTCTACAAGCACGAC 60.074 42.308 14.77 0.00 0.00 4.34
1842 6387 1.672881 CCTTGCTCAATCCGATTGGTC 59.327 52.381 18.91 12.09 40.61 4.02
1847 6392 2.289002 GCTCAATCCGATTGGTCATGTC 59.711 50.000 18.91 0.00 40.61 3.06
1897 6442 7.096023 GCTTCTGTACCTTATGAATGTACATCG 60.096 40.741 9.23 0.00 42.65 3.84
1901 6446 5.258456 ACCTTATGAATGTACATCGTCGT 57.742 39.130 9.23 8.06 0.00 4.34
1926 6472 3.846360 CGGAATCGTTCTCTTGGTTAGT 58.154 45.455 0.00 0.00 0.00 2.24
1927 6473 3.612860 CGGAATCGTTCTCTTGGTTAGTG 59.387 47.826 0.00 0.00 0.00 2.74
1929 6475 4.995487 GGAATCGTTCTCTTGGTTAGTGTT 59.005 41.667 0.00 0.00 0.00 3.32
1930 6476 5.107065 GGAATCGTTCTCTTGGTTAGTGTTG 60.107 44.000 0.00 0.00 0.00 3.33
2083 6632 0.984230 CTCCTAGGAGGTGGTTTGCA 59.016 55.000 28.68 0.00 38.51 4.08
2138 6687 1.721389 CTAACGTGCACTGCTGTACTG 59.279 52.381 16.19 0.00 31.13 2.74
2615 7167 5.011738 GTCTTCCGGGATATCATGGAAACTA 59.988 44.000 21.51 11.90 39.83 2.24
2657 7209 5.872617 TCAGTAAACTGTATGATTTCCCACG 59.127 40.000 9.81 0.00 44.12 4.94
2878 7431 3.437049 GTCTGAGTGTTAATGTTCTGGCC 59.563 47.826 0.00 0.00 0.00 5.36
2997 7550 8.888579 TCGTGAGTCTATTCTTTCTTTCTTTT 57.111 30.769 0.00 0.00 0.00 2.27
3020 7591 4.502105 TGTCCAGTATGCATGTACCATT 57.498 40.909 10.16 0.00 31.97 3.16
3090 7670 8.646900 TCATTTATAGCCCTCTTTTGTTTTGTT 58.353 29.630 0.00 0.00 0.00 2.83
3106 7686 6.634805 TGTTTTGTTGAGTTTGCTGGATTTA 58.365 32.000 0.00 0.00 0.00 1.40
3118 7698 4.348486 TGCTGGATTTACCCTTTGCATAA 58.652 39.130 0.00 0.00 38.00 1.90
3119 7699 4.961730 TGCTGGATTTACCCTTTGCATAAT 59.038 37.500 0.00 0.00 38.00 1.28
3145 7725 6.732531 ATATCATGCCGTTATTCATCAGTG 57.267 37.500 0.00 0.00 0.00 3.66
3170 7750 0.872388 GTGGTTGTTAGTTGAGGCCG 59.128 55.000 0.00 0.00 0.00 6.13
3190 7770 4.069304 CCGGTTCATAGGAAACAGAAACA 58.931 43.478 5.94 0.00 40.92 2.83
3196 7776 5.063204 TCATAGGAAACAGAAACACCACTG 58.937 41.667 0.00 0.00 39.65 3.66
3232 8050 0.310854 CAGTCGCACAACCCCTTTTC 59.689 55.000 0.00 0.00 0.00 2.29
3276 8094 6.031751 TCCACCCATTTAAATTACTGTTGC 57.968 37.500 0.00 0.00 0.00 4.17
3411 8281 7.201992 GCCCATTTTGAACATCATATTTAGGGA 60.202 37.037 0.00 0.00 0.00 4.20
3424 8294 8.079211 TCATATTTAGGGACCTGATAGTATGC 57.921 38.462 0.00 0.00 0.00 3.14
3543 8413 7.067981 AGTGATGCAAGATATCCTTTTCCTTTC 59.932 37.037 0.00 0.00 31.42 2.62
3585 8455 6.436218 GGTACCTTTGTTTTTATCAGTGGGAT 59.564 38.462 4.06 0.00 40.14 3.85
4279 9467 5.109903 ACTGTTCTATGTTATTCCTCACGC 58.890 41.667 0.00 0.00 0.00 5.34
4697 9887 7.849322 TGCTTTTCTTCCCTAAATTTAAGGT 57.151 32.000 11.77 0.00 31.70 3.50
4740 10083 7.761704 TGATCAAAATGTTCCGTTCTTCAAAAA 59.238 29.630 0.00 0.00 0.00 1.94
4759 10102 8.094798 TCAAAAATATTATCCGACAGTATGCC 57.905 34.615 0.00 0.00 42.53 4.40
4776 10119 8.982723 ACAGTATGCCTATCTTTATGGTATAGG 58.017 37.037 0.00 0.00 43.44 2.57
4830 10174 3.248266 GTTGATTGTTGAAGGCAGCATC 58.752 45.455 0.00 0.00 35.11 3.91
4906 12429 2.125952 GCCTGGGCAAATCGCAAC 60.126 61.111 6.75 0.00 45.17 4.17
4924 12447 1.898863 ACCATTAGATCAGCTGGGGT 58.101 50.000 15.13 7.56 32.89 4.95
4957 12483 1.614903 CTGCATCTTTTGTCTTGGGCA 59.385 47.619 0.00 0.00 0.00 5.36
4958 12484 1.340889 TGCATCTTTTGTCTTGGGCAC 59.659 47.619 0.00 0.00 0.00 5.01
5023 12575 0.535553 GTTTTGCTCACCCCGTGGTA 60.536 55.000 0.00 0.00 45.57 3.25
5031 12584 0.533951 CACCCCGTGGTAGTCTTACC 59.466 60.000 0.00 0.00 45.57 2.85
5163 15123 4.591321 TTAAGACATCAAAGGCATCCCT 57.409 40.909 0.00 0.00 45.77 4.20
5213 15202 7.816640 TGAACCTTGAGCAAAATATACAGTTC 58.183 34.615 0.00 0.00 0.00 3.01
5342 15333 2.301346 CCATCTGCCCCTGAAATGTAC 58.699 52.381 0.00 0.00 0.00 2.90
5356 15347 1.941377 ATGTACGGACCTACACCCAA 58.059 50.000 0.00 0.00 29.31 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.129988 GCTCCTTCAAGATGGAATGTTGG 59.870 47.826 6.22 0.00 46.58 3.77
3 4 2.681976 CGGCTCCTTCAAGATGGAATGT 60.682 50.000 6.22 0.00 34.70 2.71
4 5 1.945394 CGGCTCCTTCAAGATGGAATG 59.055 52.381 6.22 0.00 34.70 2.67
95 4380 4.717313 GACCCTTGCCGGTGGGAC 62.717 72.222 27.89 20.66 46.15 4.46
112 4404 2.107141 GAGGCGGAGTGAATCCCG 59.893 66.667 0.00 0.00 46.50 5.14
118 4410 3.371063 GTCGTGGAGGCGGAGTGA 61.371 66.667 0.00 0.00 0.00 3.41
147 4439 1.662438 CTGCCCCGTCTCTGTCTCTC 61.662 65.000 0.00 0.00 0.00 3.20
148 4440 1.680651 CTGCCCCGTCTCTGTCTCT 60.681 63.158 0.00 0.00 0.00 3.10
160 4452 4.883354 CTCCCGCCAATCTGCCCC 62.883 72.222 0.00 0.00 0.00 5.80
168 4460 1.485294 TAAAGTCTGCCTCCCGCCAA 61.485 55.000 0.00 0.00 36.24 4.52
222 4514 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
252 4544 8.637099 GGACGGAGGAAGTACTAGTTTTAATAT 58.363 37.037 0.00 0.00 0.00 1.28
255 4547 6.012745 AGGACGGAGGAAGTACTAGTTTTAA 58.987 40.000 0.00 0.00 29.47 1.52
257 4549 4.414677 AGGACGGAGGAAGTACTAGTTTT 58.585 43.478 0.00 0.00 29.47 2.43
258 4550 4.044946 AGGACGGAGGAAGTACTAGTTT 57.955 45.455 0.00 0.00 29.47 2.66
259 4551 3.735720 AGGACGGAGGAAGTACTAGTT 57.264 47.619 0.00 0.00 29.47 2.24
261 4553 6.712179 ATTTTAGGACGGAGGAAGTACTAG 57.288 41.667 0.00 0.00 36.49 2.57
262 4554 6.894103 AGAATTTTAGGACGGAGGAAGTACTA 59.106 38.462 0.00 0.00 34.13 1.82
263 4555 5.720520 AGAATTTTAGGACGGAGGAAGTACT 59.279 40.000 0.00 0.00 36.60 2.73
264 4556 5.975282 AGAATTTTAGGACGGAGGAAGTAC 58.025 41.667 0.00 0.00 0.00 2.73
265 4557 6.013984 ACAAGAATTTTAGGACGGAGGAAGTA 60.014 38.462 0.00 0.00 0.00 2.24
267 4559 5.246307 ACAAGAATTTTAGGACGGAGGAAG 58.754 41.667 0.00 0.00 0.00 3.46
270 4562 4.833390 AGACAAGAATTTTAGGACGGAGG 58.167 43.478 0.00 0.00 0.00 4.30
271 4563 7.321153 TCTAAGACAAGAATTTTAGGACGGAG 58.679 38.462 0.00 0.00 0.00 4.63
272 4564 7.235935 TCTAAGACAAGAATTTTAGGACGGA 57.764 36.000 0.00 0.00 0.00 4.69
273 4565 8.494016 AATCTAAGACAAGAATTTTAGGACGG 57.506 34.615 0.00 0.00 0.00 4.79
274 4566 9.760660 CAAATCTAAGACAAGAATTTTAGGACG 57.239 33.333 0.00 0.00 0.00 4.79
285 4577 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
286 4578 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
288 4580 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
289 4581 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
296 4588 9.640963 GCTAGATACATCCGTATTTAGACAAAT 57.359 33.333 12.07 0.00 41.85 2.32
297 4589 8.857098 AGCTAGATACATCCGTATTTAGACAAA 58.143 33.333 12.07 0.00 41.85 2.83
298 4590 8.405418 AGCTAGATACATCCGTATTTAGACAA 57.595 34.615 12.07 0.00 41.85 3.18
299 4591 7.997773 AGCTAGATACATCCGTATTTAGACA 57.002 36.000 12.07 0.00 41.85 3.41
339 4631 8.470805 GGATGATTTGTCTAGATACGGATGTAT 58.529 37.037 0.00 0.00 43.97 2.29
340 4632 7.361799 CGGATGATTTGTCTAGATACGGATGTA 60.362 40.741 0.00 0.00 34.45 2.29
341 4633 6.570571 CGGATGATTTGTCTAGATACGGATGT 60.571 42.308 0.00 0.00 0.00 3.06
342 4634 5.802451 CGGATGATTTGTCTAGATACGGATG 59.198 44.000 0.00 0.00 0.00 3.51
343 4635 5.477291 ACGGATGATTTGTCTAGATACGGAT 59.523 40.000 0.00 0.00 0.00 4.18
344 4636 4.825634 ACGGATGATTTGTCTAGATACGGA 59.174 41.667 0.00 0.00 0.00 4.69
345 4637 5.122512 ACGGATGATTTGTCTAGATACGG 57.877 43.478 0.00 0.00 0.00 4.02
346 4638 7.753659 AGATACGGATGATTTGTCTAGATACG 58.246 38.462 0.00 0.00 0.00 3.06
349 4641 8.952278 GTCTAGATACGGATGATTTGTCTAGAT 58.048 37.037 11.10 0.00 42.42 1.98
350 4642 7.937394 TGTCTAGATACGGATGATTTGTCTAGA 59.063 37.037 0.00 5.39 39.92 2.43
351 4643 8.100508 TGTCTAGATACGGATGATTTGTCTAG 57.899 38.462 0.00 0.00 36.59 2.43
352 4644 8.459911 TTGTCTAGATACGGATGATTTGTCTA 57.540 34.615 0.00 0.00 0.00 2.59
353 4645 6.961360 TGTCTAGATACGGATGATTTGTCT 57.039 37.500 0.00 0.00 0.00 3.41
354 4646 8.594881 ATTTGTCTAGATACGGATGATTTGTC 57.405 34.615 0.00 0.00 0.00 3.18
355 4647 8.424918 AGATTTGTCTAGATACGGATGATTTGT 58.575 33.333 0.00 0.00 0.00 2.83
356 4648 8.824159 AGATTTGTCTAGATACGGATGATTTG 57.176 34.615 0.00 0.00 0.00 2.32
359 4651 9.521841 TCTTAGATTTGTCTAGATACGGATGAT 57.478 33.333 0.00 0.00 0.00 2.45
360 4652 8.784994 GTCTTAGATTTGTCTAGATACGGATGA 58.215 37.037 0.00 0.00 0.00 2.92
361 4653 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
362 4654 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
363 4655 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
364 4656 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
377 4669 9.720769 TCCGTCTTAAAATTCTTGTCTTAGATT 57.279 29.630 0.00 0.00 0.00 2.40
378 4670 9.372369 CTCCGTCTTAAAATTCTTGTCTTAGAT 57.628 33.333 0.00 0.00 0.00 1.98
379 4671 7.817962 CCTCCGTCTTAAAATTCTTGTCTTAGA 59.182 37.037 0.00 0.00 0.00 2.10
380 4672 7.817962 TCCTCCGTCTTAAAATTCTTGTCTTAG 59.182 37.037 0.00 0.00 0.00 2.18
381 4673 7.673180 TCCTCCGTCTTAAAATTCTTGTCTTA 58.327 34.615 0.00 0.00 0.00 2.10
382 4674 6.531021 TCCTCCGTCTTAAAATTCTTGTCTT 58.469 36.000 0.00 0.00 0.00 3.01
383 4675 6.110411 TCCTCCGTCTTAAAATTCTTGTCT 57.890 37.500 0.00 0.00 0.00 3.41
384 4676 6.427242 ACTTCCTCCGTCTTAAAATTCTTGTC 59.573 38.462 0.00 0.00 0.00 3.18
385 4677 6.296803 ACTTCCTCCGTCTTAAAATTCTTGT 58.703 36.000 0.00 0.00 0.00 3.16
386 4678 6.803154 ACTTCCTCCGTCTTAAAATTCTTG 57.197 37.500 0.00 0.00 0.00 3.02
390 4682 9.955102 ACTTTATACTTCCTCCGTCTTAAAATT 57.045 29.630 0.00 0.00 0.00 1.82
391 4683 9.955102 AACTTTATACTTCCTCCGTCTTAAAAT 57.045 29.630 0.00 0.00 0.00 1.82
392 4684 9.211485 CAACTTTATACTTCCTCCGTCTTAAAA 57.789 33.333 0.00 0.00 0.00 1.52
393 4685 8.587608 TCAACTTTATACTTCCTCCGTCTTAAA 58.412 33.333 0.00 0.00 0.00 1.52
394 4686 8.125978 TCAACTTTATACTTCCTCCGTCTTAA 57.874 34.615 0.00 0.00 0.00 1.85
395 4687 7.395489 ACTCAACTTTATACTTCCTCCGTCTTA 59.605 37.037 0.00 0.00 0.00 2.10
396 4688 6.210984 ACTCAACTTTATACTTCCTCCGTCTT 59.789 38.462 0.00 0.00 0.00 3.01
397 4689 5.715753 ACTCAACTTTATACTTCCTCCGTCT 59.284 40.000 0.00 0.00 0.00 4.18
398 4690 5.963594 ACTCAACTTTATACTTCCTCCGTC 58.036 41.667 0.00 0.00 0.00 4.79
399 4691 5.479375 TGACTCAACTTTATACTTCCTCCGT 59.521 40.000 0.00 0.00 0.00 4.69
400 4692 5.805994 GTGACTCAACTTTATACTTCCTCCG 59.194 44.000 0.00 0.00 0.00 4.63
401 4693 6.937392 AGTGACTCAACTTTATACTTCCTCC 58.063 40.000 0.00 0.00 0.00 4.30
411 4703 8.761497 CGTCTCAAAATAAGTGACTCAACTTTA 58.239 33.333 0.00 0.00 40.77 1.85
412 4704 7.254795 CCGTCTCAAAATAAGTGACTCAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
413 4705 6.202954 CCGTCTCAAAATAAGTGACTCAACTT 59.797 38.462 0.00 0.00 42.89 2.66
414 4706 5.696724 CCGTCTCAAAATAAGTGACTCAACT 59.303 40.000 0.00 0.00 0.00 3.16
415 4707 5.694910 TCCGTCTCAAAATAAGTGACTCAAC 59.305 40.000 0.00 0.00 0.00 3.18
416 4708 5.849510 TCCGTCTCAAAATAAGTGACTCAA 58.150 37.500 0.00 0.00 0.00 3.02
417 4709 5.462530 TCCGTCTCAAAATAAGTGACTCA 57.537 39.130 0.00 0.00 0.00 3.41
418 4710 4.865365 CCTCCGTCTCAAAATAAGTGACTC 59.135 45.833 0.00 0.00 0.00 3.36
436 4728 1.621814 TCTTAAACCACACTCCCTCCG 59.378 52.381 0.00 0.00 0.00 4.63
437 4729 2.615747 GCTCTTAAACCACACTCCCTCC 60.616 54.545 0.00 0.00 0.00 4.30
438 4730 2.038557 TGCTCTTAAACCACACTCCCTC 59.961 50.000 0.00 0.00 0.00 4.30
439 4731 2.054799 TGCTCTTAAACCACACTCCCT 58.945 47.619 0.00 0.00 0.00 4.20
440 4732 2.561478 TGCTCTTAAACCACACTCCC 57.439 50.000 0.00 0.00 0.00 4.30
441 4733 6.430000 TCTTTATTGCTCTTAAACCACACTCC 59.570 38.462 0.00 0.00 0.00 3.85
442 4734 7.173390 AGTCTTTATTGCTCTTAAACCACACTC 59.827 37.037 0.00 0.00 0.00 3.51
443 4735 6.998673 AGTCTTTATTGCTCTTAAACCACACT 59.001 34.615 0.00 0.00 0.00 3.55
444 4736 7.203255 AGTCTTTATTGCTCTTAAACCACAC 57.797 36.000 0.00 0.00 0.00 3.82
445 4737 7.817418 AAGTCTTTATTGCTCTTAAACCACA 57.183 32.000 0.00 0.00 0.00 4.17
446 4738 8.349983 TGAAAGTCTTTATTGCTCTTAAACCAC 58.650 33.333 0.00 0.00 0.00 4.16
449 4741 9.730420 TGTTGAAAGTCTTTATTGCTCTTAAAC 57.270 29.630 0.00 0.00 0.00 2.01
468 4760 7.321746 GCGTCTCATTTACGTAAATTGTTGAAA 59.678 33.333 26.87 10.37 42.26 2.69
487 4779 0.608130 AATGCTACACCTGCGTCTCA 59.392 50.000 0.00 0.00 0.00 3.27
494 4786 4.678509 TTTAGCGAAAATGCTACACCTG 57.321 40.909 0.00 0.00 46.57 4.00
527 4819 8.141298 TGGGACAGATAGAGTAAATTGTAACA 57.859 34.615 0.00 0.00 0.00 2.41
547 4839 8.033038 TGTCAATACGCTCTTATATTATGGGAC 58.967 37.037 0.00 0.00 0.00 4.46
549 4841 8.035394 AGTGTCAATACGCTCTTATATTATGGG 58.965 37.037 0.00 0.00 42.91 4.00
550 4842 8.988064 AGTGTCAATACGCTCTTATATTATGG 57.012 34.615 0.00 0.00 42.91 2.74
554 4846 8.847196 TCACTAGTGTCAATACGCTCTTATATT 58.153 33.333 21.99 0.00 42.91 1.28
555 4847 8.392372 TCACTAGTGTCAATACGCTCTTATAT 57.608 34.615 21.99 0.00 42.91 0.86
556 4848 7.797038 TCACTAGTGTCAATACGCTCTTATA 57.203 36.000 21.99 0.00 42.91 0.98
557 4849 6.694877 TCACTAGTGTCAATACGCTCTTAT 57.305 37.500 21.99 0.00 42.91 1.73
560 4852 6.263392 ACATATCACTAGTGTCAATACGCTCT 59.737 38.462 21.99 0.00 42.91 4.09
561 4853 6.439599 ACATATCACTAGTGTCAATACGCTC 58.560 40.000 21.99 0.00 42.91 5.03
563 4855 8.570096 TTTACATATCACTAGTGTCAATACGC 57.430 34.615 21.99 0.00 36.31 4.42
613 4905 6.708285 ACATTCTTATATTATGGGACCGTCC 58.292 40.000 9.30 9.30 35.23 4.79
614 4906 8.617290 AAACATTCTTATATTATGGGACCGTC 57.383 34.615 0.00 0.00 0.00 4.79
615 4907 8.990163 AAAACATTCTTATATTATGGGACCGT 57.010 30.769 0.00 0.00 0.00 4.83
616 4908 9.677567 CAAAAACATTCTTATATTATGGGACCG 57.322 33.333 0.00 0.00 0.00 4.79
630 4922 8.912988 TCCATCACTACTTTCAAAAACATTCTT 58.087 29.630 0.00 0.00 0.00 2.52
631 4923 8.463930 TCCATCACTACTTTCAAAAACATTCT 57.536 30.769 0.00 0.00 0.00 2.40
632 4924 7.809806 CCTCCATCACTACTTTCAAAAACATTC 59.190 37.037 0.00 0.00 0.00 2.67
634 4926 6.209391 CCCTCCATCACTACTTTCAAAAACAT 59.791 38.462 0.00 0.00 0.00 2.71
635 4927 5.534654 CCCTCCATCACTACTTTCAAAAACA 59.465 40.000 0.00 0.00 0.00 2.83
636 4928 5.768164 TCCCTCCATCACTACTTTCAAAAAC 59.232 40.000 0.00 0.00 0.00 2.43
640 4932 4.168101 ACTCCCTCCATCACTACTTTCAA 58.832 43.478 0.00 0.00 0.00 2.69
641 4933 3.791320 ACTCCCTCCATCACTACTTTCA 58.209 45.455 0.00 0.00 0.00 2.69
643 4935 6.443849 TCATTTACTCCCTCCATCACTACTTT 59.556 38.462 0.00 0.00 0.00 2.66
644 4936 5.964477 TCATTTACTCCCTCCATCACTACTT 59.036 40.000 0.00 0.00 0.00 2.24
645 4937 5.529289 TCATTTACTCCCTCCATCACTACT 58.471 41.667 0.00 0.00 0.00 2.57
646 4938 5.364157 ACTCATTTACTCCCTCCATCACTAC 59.636 44.000 0.00 0.00 0.00 2.73
647 4939 5.363868 CACTCATTTACTCCCTCCATCACTA 59.636 44.000 0.00 0.00 0.00 2.74
648 4940 4.163078 CACTCATTTACTCCCTCCATCACT 59.837 45.833 0.00 0.00 0.00 3.41
649 4941 4.080863 ACACTCATTTACTCCCTCCATCAC 60.081 45.833 0.00 0.00 0.00 3.06
650 4942 4.104086 ACACTCATTTACTCCCTCCATCA 58.896 43.478 0.00 0.00 0.00 3.07
651 4943 4.762289 ACACTCATTTACTCCCTCCATC 57.238 45.455 0.00 0.00 0.00 3.51
652 4944 4.101741 GCTACACTCATTTACTCCCTCCAT 59.898 45.833 0.00 0.00 0.00 3.41
653 4945 3.451178 GCTACACTCATTTACTCCCTCCA 59.549 47.826 0.00 0.00 0.00 3.86
654 4946 3.451178 TGCTACACTCATTTACTCCCTCC 59.549 47.826 0.00 0.00 0.00 4.30
655 4947 4.434520 GTGCTACACTCATTTACTCCCTC 58.565 47.826 0.00 0.00 0.00 4.30
656 4948 3.119101 CGTGCTACACTCATTTACTCCCT 60.119 47.826 0.00 0.00 31.34 4.20
657 4949 3.187700 CGTGCTACACTCATTTACTCCC 58.812 50.000 0.00 0.00 31.34 4.30
658 4950 3.846360 ACGTGCTACACTCATTTACTCC 58.154 45.455 0.00 0.00 31.34 3.85
659 4951 5.459107 CCATACGTGCTACACTCATTTACTC 59.541 44.000 0.00 0.00 31.34 2.59
660 4952 5.126545 TCCATACGTGCTACACTCATTTACT 59.873 40.000 0.00 0.00 31.34 2.24
661 4953 5.345702 TCCATACGTGCTACACTCATTTAC 58.654 41.667 0.00 0.00 31.34 2.01
662 4954 5.585820 TCCATACGTGCTACACTCATTTA 57.414 39.130 0.00 0.00 31.34 1.40
663 4955 4.465632 TCCATACGTGCTACACTCATTT 57.534 40.909 0.00 0.00 31.34 2.32
664 4956 4.672587 ATCCATACGTGCTACACTCATT 57.327 40.909 0.00 0.00 31.34 2.57
665 4957 4.672587 AATCCATACGTGCTACACTCAT 57.327 40.909 0.00 0.00 31.34 2.90
666 4958 4.465632 AAATCCATACGTGCTACACTCA 57.534 40.909 0.00 0.00 31.34 3.41
667 4959 4.630069 ACAAAATCCATACGTGCTACACTC 59.370 41.667 0.00 0.00 31.34 3.51
668 4960 4.575885 ACAAAATCCATACGTGCTACACT 58.424 39.130 0.00 0.00 31.34 3.55
669 4961 4.939509 ACAAAATCCATACGTGCTACAC 57.060 40.909 0.00 0.00 0.00 2.90
670 4962 7.551262 AGATTTACAAAATCCATACGTGCTACA 59.449 33.333 0.00 0.00 0.00 2.74
671 4963 7.916552 AGATTTACAAAATCCATACGTGCTAC 58.083 34.615 0.00 0.00 0.00 3.58
675 4967 7.253288 CGCAAAGATTTACAAAATCCATACGTG 60.253 37.037 0.00 0.00 0.00 4.49
718 5010 2.009042 GCACCCTTTCTCACCATCTCG 61.009 57.143 0.00 0.00 0.00 4.04
724 5016 3.056328 GCCGCACCCTTTCTCACC 61.056 66.667 0.00 0.00 0.00 4.02
747 5039 3.506312 CTCTCGCTCTCGCTCTCGC 62.506 68.421 0.00 0.00 35.26 5.03
748 5040 2.625906 CTCTCGCTCTCGCTCTCG 59.374 66.667 0.00 0.00 35.26 4.04
749 5041 2.542907 CCCTCTCGCTCTCGCTCTC 61.543 68.421 0.00 0.00 35.26 3.20
750 5042 2.515991 CCCTCTCGCTCTCGCTCT 60.516 66.667 0.00 0.00 35.26 4.09
751 5043 4.264638 GCCCTCTCGCTCTCGCTC 62.265 72.222 0.00 0.00 35.26 5.03
777 5069 3.947841 CGGTTGTGGGCACGTGTG 61.948 66.667 18.38 0.00 0.00 3.82
778 5070 4.164087 TCGGTTGTGGGCACGTGT 62.164 61.111 18.38 0.00 0.00 4.49
779 5071 2.702751 TAGTCGGTTGTGGGCACGTG 62.703 60.000 12.28 12.28 0.00 4.49
780 5072 2.500714 TAGTCGGTTGTGGGCACGT 61.501 57.895 0.00 0.00 0.00 4.49
781 5073 2.025418 GTAGTCGGTTGTGGGCACG 61.025 63.158 0.00 0.00 0.00 5.34
782 5074 1.670083 GGTAGTCGGTTGTGGGCAC 60.670 63.158 0.00 0.00 0.00 5.01
783 5075 2.745037 GGTAGTCGGTTGTGGGCA 59.255 61.111 0.00 0.00 0.00 5.36
784 5076 2.433664 CGGTAGTCGGTTGTGGGC 60.434 66.667 0.00 0.00 34.75 5.36
825 5127 1.076705 GTGGGGAATTCTCAGGCCC 60.077 63.158 7.81 8.63 39.93 5.80
912 5215 2.702206 GAGCTCGACGACGACGAT 59.298 61.111 21.45 9.06 43.81 3.73
923 5226 2.105128 GTGTGGGGATCGAGCTCG 59.895 66.667 30.03 30.03 41.45 5.03
924 5227 2.359169 TGGTGTGGGGATCGAGCTC 61.359 63.158 2.73 2.73 0.00 4.09
925 5228 2.284625 TGGTGTGGGGATCGAGCT 60.285 61.111 0.00 0.00 0.00 4.09
928 5231 2.203862 TGGTGGTGTGGGGATCGA 60.204 61.111 0.00 0.00 0.00 3.59
1053 5366 2.412937 GCCCCCGCAATTGATTCG 59.587 61.111 10.34 3.13 34.03 3.34
1140 5464 3.879159 GGTCGAAATCCGCCGAAA 58.121 55.556 0.00 0.00 36.50 3.46
1350 5676 0.036010 CCCAACTCCATCGTCTTGCT 60.036 55.000 0.00 0.00 0.00 3.91
1357 5683 1.149174 CCCCATCCCAACTCCATCG 59.851 63.158 0.00 0.00 0.00 3.84
1373 5699 0.609131 CTCCACCACACAACCATCCC 60.609 60.000 0.00 0.00 0.00 3.85
1492 5873 0.325933 TCATCACAGCTGGGTCCTTG 59.674 55.000 17.28 9.92 0.00 3.61
1515 5896 4.693566 TGGCTAAACCACTGTCGAATAAAG 59.306 41.667 0.00 0.00 46.36 1.85
1602 6048 5.082059 CACAGTAAGAACGCATTTGCTTAG 58.918 41.667 0.51 0.00 39.32 2.18
1629 6075 2.177580 AACAACACCCGTGACAGCG 61.178 57.895 0.96 0.00 0.00 5.18
1669 6214 6.636454 ATCACCATAGTCACCCTTTAAGAA 57.364 37.500 0.00 0.00 0.00 2.52
1729 6274 7.029563 GCTAACCAACAATTTCTTGTCCATAG 58.970 38.462 0.00 0.00 44.83 2.23
1815 6360 1.450531 GGATTGAGCAAGGCATCCGG 61.451 60.000 0.00 0.00 0.00 5.14
1842 6387 4.860352 CCATGTGCACAATACAAAGACATG 59.140 41.667 25.72 12.42 39.15 3.21
1847 6392 3.940209 ACCCATGTGCACAATACAAAG 57.060 42.857 25.72 10.81 0.00 2.77
1923 6469 3.069586 AGCTACACAACAGCTCAACACTA 59.930 43.478 0.00 0.00 46.37 2.74
1924 6470 2.158900 AGCTACACAACAGCTCAACACT 60.159 45.455 0.00 0.00 46.37 3.55
1925 6471 2.213499 AGCTACACAACAGCTCAACAC 58.787 47.619 0.00 0.00 46.37 3.32
1926 6472 2.620251 AGCTACACAACAGCTCAACA 57.380 45.000 0.00 0.00 46.37 3.33
2002 6550 3.861569 AAGTCTTTGCGTTTTCTCGAG 57.138 42.857 5.93 5.93 0.00 4.04
2597 7149 7.928307 AATTGATAGTTTCCATGATATCCCG 57.072 36.000 0.00 0.00 0.00 5.14
2878 7431 6.016276 ACAAGGCTACAAGTTCAATTAAGGTG 60.016 38.462 0.00 0.00 0.00 4.00
2937 7490 2.373169 AGTCTTTCCATCTTGCTCCACA 59.627 45.455 0.00 0.00 0.00 4.17
3020 7591 9.519191 TCTTCTATTTTGTCAAATCTGGATTCA 57.481 29.630 0.00 0.00 34.29 2.57
3090 7670 3.806949 AGGGTAAATCCAGCAAACTCA 57.193 42.857 0.00 0.00 38.11 3.41
3119 7699 9.533253 CACTGATGAATAACGGCATGATATATA 57.467 33.333 0.00 0.00 0.00 0.86
3125 7705 3.872696 ACACTGATGAATAACGGCATGA 58.127 40.909 0.00 0.00 0.00 3.07
3145 7725 5.458015 GCCTCAACTAACAACCACATAAAC 58.542 41.667 0.00 0.00 0.00 2.01
3170 7750 4.825085 TGGTGTTTCTGTTTCCTATGAACC 59.175 41.667 0.00 0.00 0.00 3.62
3190 7770 3.118261 CCTACATATTCAGGCACAGTGGT 60.118 47.826 1.84 0.00 0.00 4.16
3217 8035 1.106944 AGGTGAAAAGGGGTTGTGCG 61.107 55.000 0.00 0.00 0.00 5.34
3424 8294 5.066764 CCGTACCACCCAAGTATTTAAATGG 59.933 44.000 11.05 4.85 0.00 3.16
3543 8413 4.084287 GGTACCAAAGAGGGGTTTAAAGG 58.916 47.826 7.15 0.00 43.89 3.11
3585 8455 1.671054 GCGTTCTTGCCCAGCAGTA 60.671 57.895 0.00 0.00 40.61 2.74
4177 9105 6.482641 ACAGAGCATCAATGAGCAGTAAATAG 59.517 38.462 7.27 0.00 37.82 1.73
4740 10083 8.540507 AAGATAGGCATACTGTCGGATAATAT 57.459 34.615 0.00 0.00 41.72 1.28
4775 10118 7.334671 CCTTGAAAACTATAGTCAGGAACTTCC 59.665 40.741 5.70 0.00 39.55 3.46
4776 10119 7.878644 ACCTTGAAAACTATAGTCAGGAACTTC 59.121 37.037 5.70 2.39 39.55 3.01
4830 10174 1.670674 GCCATGTTGTGCACATTCCTG 60.671 52.381 22.39 17.88 44.40 3.86
4901 12424 1.600957 CCAGCTGATCTAATGGTTGCG 59.399 52.381 17.39 0.00 0.00 4.85
4904 12427 2.092212 CACCCCAGCTGATCTAATGGTT 60.092 50.000 17.39 0.00 0.00 3.67
4906 12429 1.492176 ACACCCCAGCTGATCTAATGG 59.508 52.381 17.39 5.54 0.00 3.16
4924 12447 0.388659 GATGCAGGCAACCAAACACA 59.611 50.000 0.00 0.00 37.17 3.72
5023 12575 2.554032 GCTGCATTTGTGTGGTAAGACT 59.446 45.455 0.00 0.00 0.00 3.24
5031 12584 2.495409 TGAAGTGCTGCATTTGTGTG 57.505 45.000 15.36 0.00 0.00 3.82
5131 14802 7.121315 GCCTTTGATGTCTTAAACTATGGTCTT 59.879 37.037 0.00 0.00 0.00 3.01
5213 15202 5.513495 GCTTGATCGTCTGAACTTACTACAG 59.487 44.000 0.00 0.00 0.00 2.74
5342 15333 1.071071 TGAGTTTTGGGTGTAGGTCCG 59.929 52.381 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.