Multiple sequence alignment - TraesCS3B01G070200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G070200 chr3B 100.000 3988 0 0 1 3988 42124218 42128205 0.000000e+00 7365.0
1 TraesCS3B01G070200 chr3B 85.173 1794 237 22 1037 2818 41015949 41014173 0.000000e+00 1812.0
2 TraesCS3B01G070200 chr3B 88.102 1370 144 17 1450 2814 42047859 42046504 0.000000e+00 1609.0
3 TraesCS3B01G070200 chr3B 92.157 51 4 0 2910 2960 42127025 42127075 5.530000e-09 73.1
4 TraesCS3B01G070200 chr3B 92.157 51 4 0 2808 2858 42127127 42127177 5.530000e-09 73.1
5 TraesCS3B01G070200 chr3A 91.842 3089 157 36 949 3988 32876747 32873705 0.000000e+00 4220.0
6 TraesCS3B01G070200 chr3A 87.788 1605 182 11 1221 2818 32426424 32428021 0.000000e+00 1866.0
7 TraesCS3B01G070200 chr3A 94.309 369 19 2 3594 3961 32863265 32862898 7.480000e-157 564.0
8 TraesCS3B01G070200 chr3A 90.774 336 20 6 568 898 32877074 32876745 4.730000e-119 438.0
9 TraesCS3B01G070200 chr3A 85.635 181 22 2 1162 1338 32883304 32883124 1.890000e-43 187.0
10 TraesCS3B01G070200 chr3A 100.000 29 0 0 3276 3304 518908176 518908204 2.000000e-03 54.7
11 TraesCS3B01G070200 chr3D 93.691 2330 104 16 587 2909 23731627 23729334 0.000000e+00 3448.0
12 TraesCS3B01G070200 chr3D 87.282 1604 192 10 1221 2818 23230787 23229190 0.000000e+00 1821.0
13 TraesCS3B01G070200 chr3D 93.537 1145 53 5 2859 3988 23729435 23728297 0.000000e+00 1685.0
14 TraesCS3B01G070200 chr3D 82.000 600 58 25 819 1401 23734844 23734278 7.810000e-127 464.0
15 TraesCS3B01G070200 chr3D 81.978 455 57 15 994 1444 23857635 23858068 2.930000e-96 363.0
16 TraesCS3B01G070200 chr3D 90.265 113 10 1 3372 3483 23729493 23729381 3.210000e-31 147.0
17 TraesCS3B01G070200 chr3D 92.727 55 3 1 2910 2963 23729435 23729381 1.190000e-10 78.7
18 TraesCS3B01G070200 chr2A 91.443 1823 131 14 1034 2854 672946737 672944938 0.000000e+00 2479.0
19 TraesCS3B01G070200 chr2D 91.048 1832 137 13 1024 2854 528100191 528098386 0.000000e+00 2449.0
20 TraesCS3B01G070200 chr2D 84.829 468 58 12 4 468 557880541 557880084 3.630000e-125 459.0
21 TraesCS3B01G070200 chr2B 90.671 1833 142 13 1024 2854 626092169 626090364 0.000000e+00 2410.0
22 TraesCS3B01G070200 chr4B 83.821 513 75 7 1 512 623985090 623985595 7.750000e-132 481.0
23 TraesCS3B01G070200 chr7B 86.911 382 32 12 1 382 133709474 133709837 2.870000e-111 412.0
24 TraesCS3B01G070200 chr7D 86.579 380 35 11 4 381 401784390 401784025 4.800000e-109 405.0
25 TraesCS3B01G070200 chr7D 84.536 388 45 13 1 386 5434020 5434394 1.750000e-98 370.0
26 TraesCS3B01G070200 chr7D 86.842 76 10 0 3123 3198 82609655 82609730 7.100000e-13 86.1
27 TraesCS3B01G070200 chr5D 86.198 384 40 11 1 382 447145297 447144925 1.730000e-108 403.0
28 TraesCS3B01G070200 chr5D 84.596 396 46 11 1 393 283103322 283103705 2.910000e-101 379.0
29 TraesCS3B01G070200 chr5D 84.675 385 53 5 1 382 513458808 513459189 2.910000e-101 379.0
30 TraesCS3B01G070200 chr5B 85.271 387 51 4 1 386 526192084 526191703 1.040000e-105 394.0
31 TraesCS3B01G070200 chrUn 94.643 224 12 0 1221 1444 373565484 373565261 8.200000e-92 348.0
32 TraesCS3B01G070200 chr6D 77.833 203 32 6 3128 3317 391923148 391922946 3.260000e-21 113.0
33 TraesCS3B01G070200 chr6D 77.358 159 27 8 3166 3318 25975669 25975514 7.100000e-13 86.1
34 TraesCS3B01G070200 chr4A 95.122 41 2 0 3166 3206 464987922 464987962 9.250000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G070200 chr3B 42124218 42128205 3987 False 2503.733333 7365 94.771333 1 3988 3 chr3B.!!$F1 3987
1 TraesCS3B01G070200 chr3B 41014173 41015949 1776 True 1812.000000 1812 85.173000 1037 2818 1 chr3B.!!$R1 1781
2 TraesCS3B01G070200 chr3B 42046504 42047859 1355 True 1609.000000 1609 88.102000 1450 2814 1 chr3B.!!$R2 1364
3 TraesCS3B01G070200 chr3A 32873705 32877074 3369 True 2329.000000 4220 91.308000 568 3988 2 chr3A.!!$R3 3420
4 TraesCS3B01G070200 chr3A 32426424 32428021 1597 False 1866.000000 1866 87.788000 1221 2818 1 chr3A.!!$F1 1597
5 TraesCS3B01G070200 chr3D 23229190 23230787 1597 True 1821.000000 1821 87.282000 1221 2818 1 chr3D.!!$R1 1597
6 TraesCS3B01G070200 chr3D 23728297 23731627 3330 True 1339.675000 3448 92.555000 587 3988 4 chr3D.!!$R3 3401
7 TraesCS3B01G070200 chr3D 23734278 23734844 566 True 464.000000 464 82.000000 819 1401 1 chr3D.!!$R2 582
8 TraesCS3B01G070200 chr2A 672944938 672946737 1799 True 2479.000000 2479 91.443000 1034 2854 1 chr2A.!!$R1 1820
9 TraesCS3B01G070200 chr2D 528098386 528100191 1805 True 2449.000000 2449 91.048000 1024 2854 1 chr2D.!!$R1 1830
10 TraesCS3B01G070200 chr2B 626090364 626092169 1805 True 2410.000000 2410 90.671000 1024 2854 1 chr2B.!!$R1 1830
11 TraesCS3B01G070200 chr4B 623985090 623985595 505 False 481.000000 481 83.821000 1 512 1 chr4B.!!$F1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 402 0.037697 TGCTACCTGCGACGTGAAAT 60.038 50.0 0.00 0.00 46.63 2.17 F
511 512 0.108424 GCGTCTGTTGAGGATGCTCT 60.108 55.0 15.82 0.00 41.08 4.09 F
631 632 0.387622 CGCCAACTTGCCATCACTTG 60.388 55.0 0.00 0.00 0.00 3.16 F
705 706 0.512952 ATTGACAAAGACACGCGAGC 59.487 50.0 15.93 0.75 0.00 5.03 F
995 1010 0.527385 CCTCTGAGCAGCGAAGTAGC 60.527 60.0 0.00 0.00 37.41 3.58 F
2848 2913 0.736325 CAGGACGCCAACGAAGTAGG 60.736 60.0 0.00 0.00 45.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 1978 2.094906 CCTTGTCCATCGTCTCGTACAA 60.095 50.000 0.00 0.0 0.00 2.41 R
2023 2081 2.361357 CGGTCTCCGTCCTGTCCT 60.361 66.667 0.00 0.0 42.73 3.85 R
2222 2283 2.561478 AGATAGAGAGAGAGGCGGAC 57.439 55.000 0.00 0.0 0.00 4.79 R
2696 2761 1.073964 GGCCGACGTTAAGGTTCTTC 58.926 55.000 1.77 0.0 0.00 2.87 R
2929 3000 1.466025 TACTTCGTTGGCGTCCTGGT 61.466 55.000 0.00 0.0 39.49 4.00 R
3678 3787 3.236047 TGGTGTAGTGCTCTTAAGGTGA 58.764 45.455 1.85 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.049433 GGACGTCCCGTGTGAGTG 60.049 66.667 24.75 0.00 41.37 3.51
50 51 2.726274 GACGTCCCGTGTGAGTGT 59.274 61.111 3.51 0.00 41.37 3.55
51 52 1.660575 GACGTCCCGTGTGAGTGTG 60.661 63.158 3.51 0.00 41.37 3.82
52 53 2.355837 CGTCCCGTGTGAGTGTGG 60.356 66.667 0.00 0.00 0.00 4.17
53 54 2.852180 CGTCCCGTGTGAGTGTGGA 61.852 63.158 0.00 0.00 0.00 4.02
54 55 1.006102 GTCCCGTGTGAGTGTGGAG 60.006 63.158 0.00 0.00 0.00 3.86
55 56 2.207229 TCCCGTGTGAGTGTGGAGG 61.207 63.158 0.00 0.00 0.00 4.30
56 57 2.207229 CCCGTGTGAGTGTGGAGGA 61.207 63.158 0.00 0.00 0.00 3.71
57 58 1.290324 CCGTGTGAGTGTGGAGGAG 59.710 63.158 0.00 0.00 0.00 3.69
58 59 1.290324 CGTGTGAGTGTGGAGGAGG 59.710 63.158 0.00 0.00 0.00 4.30
59 60 1.674057 GTGTGAGTGTGGAGGAGGG 59.326 63.158 0.00 0.00 0.00 4.30
60 61 2.217038 TGTGAGTGTGGAGGAGGGC 61.217 63.158 0.00 0.00 0.00 5.19
61 62 1.915769 GTGAGTGTGGAGGAGGGCT 60.916 63.158 0.00 0.00 0.00 5.19
62 63 1.915266 TGAGTGTGGAGGAGGGCTG 60.915 63.158 0.00 0.00 0.00 4.85
63 64 1.915769 GAGTGTGGAGGAGGGCTGT 60.916 63.158 0.00 0.00 0.00 4.40
64 65 2.177594 GAGTGTGGAGGAGGGCTGTG 62.178 65.000 0.00 0.00 0.00 3.66
65 66 2.204034 TGTGGAGGAGGGCTGTGA 59.796 61.111 0.00 0.00 0.00 3.58
66 67 1.915266 TGTGGAGGAGGGCTGTGAG 60.915 63.158 0.00 0.00 0.00 3.51
67 68 2.284921 TGGAGGAGGGCTGTGAGG 60.285 66.667 0.00 0.00 0.00 3.86
68 69 3.086600 GGAGGAGGGCTGTGAGGG 61.087 72.222 0.00 0.00 0.00 4.30
69 70 2.284995 GAGGAGGGCTGTGAGGGT 60.285 66.667 0.00 0.00 0.00 4.34
70 71 2.608988 AGGAGGGCTGTGAGGGTG 60.609 66.667 0.00 0.00 0.00 4.61
71 72 3.721706 GGAGGGCTGTGAGGGTGG 61.722 72.222 0.00 0.00 0.00 4.61
72 73 4.416738 GAGGGCTGTGAGGGTGGC 62.417 72.222 0.00 0.00 0.00 5.01
84 85 2.425562 GGGTGGCCCGATTTATTGG 58.574 57.895 0.00 0.00 32.13 3.16
85 86 1.739667 GGTGGCCCGATTTATTGGC 59.260 57.895 0.00 0.00 44.59 4.52
88 89 3.455152 GCCCGATTTATTGGCCCC 58.545 61.111 0.00 0.00 39.30 5.80
89 90 1.152546 GCCCGATTTATTGGCCCCT 60.153 57.895 0.00 0.00 39.30 4.79
90 91 1.463553 GCCCGATTTATTGGCCCCTG 61.464 60.000 0.00 0.00 39.30 4.45
91 92 0.106217 CCCGATTTATTGGCCCCTGT 60.106 55.000 0.00 0.00 0.00 4.00
92 93 1.318576 CCGATTTATTGGCCCCTGTC 58.681 55.000 0.00 0.00 0.00 3.51
93 94 1.409521 CCGATTTATTGGCCCCTGTCA 60.410 52.381 0.00 0.00 0.00 3.58
94 95 2.586425 CGATTTATTGGCCCCTGTCAT 58.414 47.619 0.00 0.00 0.00 3.06
95 96 3.497763 CCGATTTATTGGCCCCTGTCATA 60.498 47.826 0.00 0.00 0.00 2.15
96 97 4.335416 CGATTTATTGGCCCCTGTCATAT 58.665 43.478 0.00 0.00 0.00 1.78
97 98 4.156556 CGATTTATTGGCCCCTGTCATATG 59.843 45.833 0.00 0.00 0.00 1.78
98 99 2.584835 TATTGGCCCCTGTCATATGC 57.415 50.000 0.00 0.00 0.00 3.14
99 100 0.178953 ATTGGCCCCTGTCATATGCC 60.179 55.000 0.00 0.00 42.49 4.40
100 101 2.926250 GGCCCCTGTCATATGCCA 59.074 61.111 0.00 0.00 41.76 4.92
101 102 1.362744 TGGCCCCTGTCATATGCCAT 61.363 55.000 0.00 0.00 46.57 4.40
102 103 0.178953 GGCCCCTGTCATATGCCATT 60.179 55.000 0.00 0.00 41.76 3.16
103 104 1.251251 GCCCCTGTCATATGCCATTC 58.749 55.000 0.00 0.00 0.00 2.67
104 105 1.527034 CCCCTGTCATATGCCATTCG 58.473 55.000 0.00 0.00 0.00 3.34
105 106 1.072173 CCCCTGTCATATGCCATTCGA 59.928 52.381 0.00 0.00 0.00 3.71
106 107 2.146342 CCCTGTCATATGCCATTCGAC 58.854 52.381 0.00 0.54 0.00 4.20
107 108 1.794701 CCTGTCATATGCCATTCGACG 59.205 52.381 0.00 0.00 0.00 5.12
108 109 2.473816 CTGTCATATGCCATTCGACGT 58.526 47.619 0.00 0.00 0.00 4.34
109 110 2.200899 TGTCATATGCCATTCGACGTG 58.799 47.619 0.00 0.00 0.00 4.49
110 111 1.070577 GTCATATGCCATTCGACGTGC 60.071 52.381 0.00 0.00 0.00 5.34
111 112 0.235665 CATATGCCATTCGACGTGCC 59.764 55.000 0.00 0.00 0.00 5.01
112 113 0.179059 ATATGCCATTCGACGTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
113 114 0.391793 TATGCCATTCGACGTGCCAA 60.392 50.000 0.00 0.00 0.00 4.52
114 115 1.240641 ATGCCATTCGACGTGCCAAA 61.241 50.000 0.00 0.00 0.00 3.28
115 116 1.284408 GCCATTCGACGTGCCAAAA 59.716 52.632 0.00 0.00 0.00 2.44
116 117 1.001745 GCCATTCGACGTGCCAAAAC 61.002 55.000 0.00 0.00 0.00 2.43
125 126 2.254918 CGTGCCAAAACGCATAATGA 57.745 45.000 0.00 0.00 41.70 2.57
126 127 2.796304 CGTGCCAAAACGCATAATGAT 58.204 42.857 0.00 0.00 41.70 2.45
127 128 2.783284 CGTGCCAAAACGCATAATGATC 59.217 45.455 0.00 0.00 41.70 2.92
128 129 3.487376 CGTGCCAAAACGCATAATGATCT 60.487 43.478 0.00 0.00 41.70 2.75
129 130 3.792956 GTGCCAAAACGCATAATGATCTG 59.207 43.478 0.00 0.00 41.70 2.90
130 131 2.791004 GCCAAAACGCATAATGATCTGC 59.209 45.455 0.00 0.00 35.02 4.26
131 132 3.734597 GCCAAAACGCATAATGATCTGCA 60.735 43.478 5.62 0.00 38.30 4.41
132 133 4.422840 CCAAAACGCATAATGATCTGCAA 58.577 39.130 5.62 0.00 38.30 4.08
133 134 4.863689 CCAAAACGCATAATGATCTGCAAA 59.136 37.500 5.62 0.00 38.30 3.68
134 135 5.348179 CCAAAACGCATAATGATCTGCAAAA 59.652 36.000 5.62 0.00 38.30 2.44
135 136 6.454583 CCAAAACGCATAATGATCTGCAAAAG 60.455 38.462 5.62 0.00 38.30 2.27
136 137 5.565592 AACGCATAATGATCTGCAAAAGA 57.434 34.783 5.62 0.00 38.30 2.52
137 138 5.565592 ACGCATAATGATCTGCAAAAGAA 57.434 34.783 5.62 0.00 38.79 2.52
138 139 6.140303 ACGCATAATGATCTGCAAAAGAAT 57.860 33.333 5.62 0.00 38.79 2.40
139 140 6.204359 ACGCATAATGATCTGCAAAAGAATC 58.796 36.000 5.62 0.00 38.79 2.52
140 141 6.039047 ACGCATAATGATCTGCAAAAGAATCT 59.961 34.615 5.62 0.00 38.79 2.40
141 142 7.227314 ACGCATAATGATCTGCAAAAGAATCTA 59.773 33.333 5.62 0.00 38.79 1.98
142 143 8.071967 CGCATAATGATCTGCAAAAGAATCTAA 58.928 33.333 5.62 0.00 38.79 2.10
143 144 9.909644 GCATAATGATCTGCAAAAGAATCTAAT 57.090 29.630 0.09 0.00 38.79 1.73
146 147 8.442632 AATGATCTGCAAAAGAATCTAATCGA 57.557 30.769 0.00 0.00 38.79 3.59
147 148 7.474398 TGATCTGCAAAAGAATCTAATCGAG 57.526 36.000 0.00 0.00 38.79 4.04
148 149 6.481313 TGATCTGCAAAAGAATCTAATCGAGG 59.519 38.462 0.00 0.00 38.79 4.63
149 150 5.977635 TCTGCAAAAGAATCTAATCGAGGA 58.022 37.500 0.00 0.00 29.54 3.71
150 151 6.045318 TCTGCAAAAGAATCTAATCGAGGAG 58.955 40.000 0.00 0.00 29.54 3.69
151 152 5.734720 TGCAAAAGAATCTAATCGAGGAGT 58.265 37.500 0.00 0.00 0.00 3.85
152 153 5.582269 TGCAAAAGAATCTAATCGAGGAGTG 59.418 40.000 0.00 0.00 0.00 3.51
153 154 5.007136 GCAAAAGAATCTAATCGAGGAGTGG 59.993 44.000 0.00 0.00 0.00 4.00
154 155 5.941555 AAAGAATCTAATCGAGGAGTGGT 57.058 39.130 0.00 0.00 0.00 4.16
155 156 4.927978 AGAATCTAATCGAGGAGTGGTG 57.072 45.455 0.00 0.00 0.00 4.17
156 157 3.639094 AGAATCTAATCGAGGAGTGGTGG 59.361 47.826 0.00 0.00 0.00 4.61
157 158 1.776662 TCTAATCGAGGAGTGGTGGG 58.223 55.000 0.00 0.00 0.00 4.61
158 159 0.105039 CTAATCGAGGAGTGGTGGGC 59.895 60.000 0.00 0.00 0.00 5.36
159 160 0.616395 TAATCGAGGAGTGGTGGGCA 60.616 55.000 0.00 0.00 0.00 5.36
160 161 1.274703 AATCGAGGAGTGGTGGGCAT 61.275 55.000 0.00 0.00 0.00 4.40
161 162 1.976132 ATCGAGGAGTGGTGGGCATG 61.976 60.000 0.00 0.00 0.00 4.06
162 163 2.273449 GAGGAGTGGTGGGCATGG 59.727 66.667 0.00 0.00 0.00 3.66
163 164 2.204136 AGGAGTGGTGGGCATGGA 60.204 61.111 0.00 0.00 0.00 3.41
164 165 1.852157 AGGAGTGGTGGGCATGGAA 60.852 57.895 0.00 0.00 0.00 3.53
165 166 1.217057 AGGAGTGGTGGGCATGGAAT 61.217 55.000 0.00 0.00 0.00 3.01
167 168 1.000739 AGTGGTGGGCATGGAATGG 59.999 57.895 0.00 0.00 46.86 3.16
168 169 2.059786 GTGGTGGGCATGGAATGGG 61.060 63.158 0.00 0.00 46.86 4.00
169 170 3.156556 GGTGGGCATGGAATGGGC 61.157 66.667 0.00 0.00 46.86 5.36
170 171 3.530260 GTGGGCATGGAATGGGCG 61.530 66.667 0.00 0.00 46.86 6.13
171 172 3.737352 TGGGCATGGAATGGGCGA 61.737 61.111 0.00 0.00 46.86 5.54
172 173 3.219198 GGGCATGGAATGGGCGAC 61.219 66.667 0.00 0.00 46.86 5.19
173 174 2.440065 GGCATGGAATGGGCGACA 60.440 61.111 0.00 0.00 46.86 4.35
174 175 2.051518 GGCATGGAATGGGCGACAA 61.052 57.895 0.00 0.00 46.86 3.18
175 176 1.603236 GGCATGGAATGGGCGACAAA 61.603 55.000 0.00 0.00 46.86 2.83
176 177 0.246086 GCATGGAATGGGCGACAAAA 59.754 50.000 0.00 0.00 46.86 2.44
177 178 1.134729 GCATGGAATGGGCGACAAAAT 60.135 47.619 0.00 0.00 46.86 1.82
178 179 2.677613 GCATGGAATGGGCGACAAAATT 60.678 45.455 0.00 0.00 46.86 1.82
179 180 2.739885 TGGAATGGGCGACAAAATTG 57.260 45.000 0.00 0.00 0.00 2.32
180 181 1.274728 TGGAATGGGCGACAAAATTGG 59.725 47.619 0.00 0.00 0.00 3.16
181 182 1.275010 GGAATGGGCGACAAAATTGGT 59.725 47.619 0.00 0.00 0.00 3.67
182 183 2.289382 GGAATGGGCGACAAAATTGGTT 60.289 45.455 0.00 0.00 0.00 3.67
183 184 3.398406 GAATGGGCGACAAAATTGGTTT 58.602 40.909 0.00 0.00 0.00 3.27
198 199 8.954950 AAAATTGGTTTGATGTTGTATGTTCA 57.045 26.923 0.00 0.00 0.00 3.18
199 200 8.592105 AAATTGGTTTGATGTTGTATGTTCAG 57.408 30.769 0.00 0.00 0.00 3.02
200 201 6.951062 TTGGTTTGATGTTGTATGTTCAGA 57.049 33.333 0.00 0.00 0.00 3.27
201 202 7.523293 TTGGTTTGATGTTGTATGTTCAGAT 57.477 32.000 0.00 0.00 0.00 2.90
202 203 6.912082 TGGTTTGATGTTGTATGTTCAGATG 58.088 36.000 0.00 0.00 0.00 2.90
203 204 6.489700 TGGTTTGATGTTGTATGTTCAGATGT 59.510 34.615 0.00 0.00 0.00 3.06
204 205 7.014134 TGGTTTGATGTTGTATGTTCAGATGTT 59.986 33.333 0.00 0.00 0.00 2.71
205 206 7.326789 GGTTTGATGTTGTATGTTCAGATGTTG 59.673 37.037 0.00 0.00 0.00 3.33
206 207 7.509141 TTGATGTTGTATGTTCAGATGTTGT 57.491 32.000 0.00 0.00 0.00 3.32
207 208 8.614469 TTGATGTTGTATGTTCAGATGTTGTA 57.386 30.769 0.00 0.00 0.00 2.41
208 209 8.791327 TGATGTTGTATGTTCAGATGTTGTAT 57.209 30.769 0.00 0.00 0.00 2.29
209 210 9.230122 TGATGTTGTATGTTCAGATGTTGTATT 57.770 29.630 0.00 0.00 0.00 1.89
210 211 9.494479 GATGTTGTATGTTCAGATGTTGTATTG 57.506 33.333 0.00 0.00 0.00 1.90
211 212 8.389779 TGTTGTATGTTCAGATGTTGTATTGT 57.610 30.769 0.00 0.00 0.00 2.71
212 213 8.845227 TGTTGTATGTTCAGATGTTGTATTGTT 58.155 29.630 0.00 0.00 0.00 2.83
213 214 9.117145 GTTGTATGTTCAGATGTTGTATTGTTG 57.883 33.333 0.00 0.00 0.00 3.33
214 215 8.614469 TGTATGTTCAGATGTTGTATTGTTGA 57.386 30.769 0.00 0.00 0.00 3.18
215 216 9.061435 TGTATGTTCAGATGTTGTATTGTTGAA 57.939 29.630 0.00 0.00 0.00 2.69
216 217 9.329913 GTATGTTCAGATGTTGTATTGTTGAAC 57.670 33.333 7.33 7.33 41.80 3.18
217 218 7.566760 TGTTCAGATGTTGTATTGTTGAACT 57.433 32.000 13.49 0.00 41.90 3.01
218 219 8.669946 TGTTCAGATGTTGTATTGTTGAACTA 57.330 30.769 13.49 0.00 41.90 2.24
219 220 9.283768 TGTTCAGATGTTGTATTGTTGAACTAT 57.716 29.630 13.49 0.00 41.90 2.12
223 224 9.897744 CAGATGTTGTATTGTTGAACTATTTGT 57.102 29.630 0.00 0.00 0.00 2.83
234 235 9.522804 TTGTTGAACTATTTGTTGTATTGGAAC 57.477 29.630 0.00 0.00 39.30 3.62
235 236 8.687242 TGTTGAACTATTTGTTGTATTGGAACA 58.313 29.630 0.00 0.00 39.30 3.18
236 237 9.691362 GTTGAACTATTTGTTGTATTGGAACAT 57.309 29.630 0.00 0.00 39.30 2.71
255 256 9.743057 TGGAACATAAACTATTTGTTTCAGTTG 57.257 29.630 13.87 6.47 44.81 3.16
256 257 9.191995 GGAACATAAACTATTTGTTTCAGTTGG 57.808 33.333 13.87 0.00 44.81 3.77
257 258 9.959749 GAACATAAACTATTTGTTTCAGTTGGA 57.040 29.630 13.87 0.00 44.81 3.53
270 271 9.638239 TTGTTTCAGTTGGAATAATAATTGAGC 57.362 29.630 0.00 0.00 34.91 4.26
271 272 9.023962 TGTTTCAGTTGGAATAATAATTGAGCT 57.976 29.630 0.00 0.00 34.91 4.09
312 313 6.639671 TTTTTGTGTGTTCGATCTTTTTGG 57.360 33.333 0.00 0.00 0.00 3.28
313 314 4.974368 TTGTGTGTTCGATCTTTTTGGT 57.026 36.364 0.00 0.00 0.00 3.67
314 315 4.974368 TGTGTGTTCGATCTTTTTGGTT 57.026 36.364 0.00 0.00 0.00 3.67
315 316 5.317733 TGTGTGTTCGATCTTTTTGGTTT 57.682 34.783 0.00 0.00 0.00 3.27
316 317 5.715070 TGTGTGTTCGATCTTTTTGGTTTT 58.285 33.333 0.00 0.00 0.00 2.43
317 318 6.853720 TGTGTGTTCGATCTTTTTGGTTTTA 58.146 32.000 0.00 0.00 0.00 1.52
318 319 7.484975 TGTGTGTTCGATCTTTTTGGTTTTAT 58.515 30.769 0.00 0.00 0.00 1.40
319 320 7.433719 TGTGTGTTCGATCTTTTTGGTTTTATG 59.566 33.333 0.00 0.00 0.00 1.90
320 321 7.434013 GTGTGTTCGATCTTTTTGGTTTTATGT 59.566 33.333 0.00 0.00 0.00 2.29
321 322 7.976734 TGTGTTCGATCTTTTTGGTTTTATGTT 59.023 29.630 0.00 0.00 0.00 2.71
322 323 9.453325 GTGTTCGATCTTTTTGGTTTTATGTTA 57.547 29.630 0.00 0.00 0.00 2.41
326 327 9.672086 TCGATCTTTTTGGTTTTATGTTAAGTG 57.328 29.630 0.00 0.00 0.00 3.16
327 328 8.911662 CGATCTTTTTGGTTTTATGTTAAGTGG 58.088 33.333 0.00 0.00 0.00 4.00
328 329 9.203421 GATCTTTTTGGTTTTATGTTAAGTGGG 57.797 33.333 0.00 0.00 0.00 4.61
329 330 8.307582 TCTTTTTGGTTTTATGTTAAGTGGGA 57.692 30.769 0.00 0.00 0.00 4.37
330 331 8.759782 TCTTTTTGGTTTTATGTTAAGTGGGAA 58.240 29.630 0.00 0.00 0.00 3.97
331 332 9.384764 CTTTTTGGTTTTATGTTAAGTGGGAAA 57.615 29.630 0.00 0.00 0.00 3.13
332 333 9.907229 TTTTTGGTTTTATGTTAAGTGGGAAAT 57.093 25.926 0.00 0.00 0.00 2.17
333 334 8.894768 TTTGGTTTTATGTTAAGTGGGAAATG 57.105 30.769 0.00 0.00 0.00 2.32
334 335 7.604657 TGGTTTTATGTTAAGTGGGAAATGT 57.395 32.000 0.00 0.00 0.00 2.71
335 336 8.024145 TGGTTTTATGTTAAGTGGGAAATGTT 57.976 30.769 0.00 0.00 0.00 2.71
336 337 7.928706 TGGTTTTATGTTAAGTGGGAAATGTTG 59.071 33.333 0.00 0.00 0.00 3.33
337 338 7.929245 GGTTTTATGTTAAGTGGGAAATGTTGT 59.071 33.333 0.00 0.00 0.00 3.32
338 339 9.320352 GTTTTATGTTAAGTGGGAAATGTTGTT 57.680 29.630 0.00 0.00 0.00 2.83
339 340 9.892130 TTTTATGTTAAGTGGGAAATGTTGTTT 57.108 25.926 0.00 0.00 0.00 2.83
340 341 8.879342 TTATGTTAAGTGGGAAATGTTGTTTG 57.121 30.769 0.00 0.00 0.00 2.93
341 342 6.287589 TGTTAAGTGGGAAATGTTGTTTGT 57.712 33.333 0.00 0.00 0.00 2.83
342 343 6.102663 TGTTAAGTGGGAAATGTTGTTTGTG 58.897 36.000 0.00 0.00 0.00 3.33
343 344 3.177997 AGTGGGAAATGTTGTTTGTGC 57.822 42.857 0.00 0.00 0.00 4.57
344 345 2.765699 AGTGGGAAATGTTGTTTGTGCT 59.234 40.909 0.00 0.00 0.00 4.40
345 346 3.957497 AGTGGGAAATGTTGTTTGTGCTA 59.043 39.130 0.00 0.00 0.00 3.49
346 347 4.037923 AGTGGGAAATGTTGTTTGTGCTAG 59.962 41.667 0.00 0.00 0.00 3.42
347 348 3.957497 TGGGAAATGTTGTTTGTGCTAGT 59.043 39.130 0.00 0.00 0.00 2.57
348 349 4.037446 TGGGAAATGTTGTTTGTGCTAGTC 59.963 41.667 0.00 0.00 0.00 2.59
349 350 4.219033 GGAAATGTTGTTTGTGCTAGTCG 58.781 43.478 0.00 0.00 0.00 4.18
350 351 2.969443 ATGTTGTTTGTGCTAGTCGC 57.031 45.000 0.00 0.00 39.77 5.19
351 352 0.579630 TGTTGTTTGTGCTAGTCGCG 59.420 50.000 0.00 0.00 43.27 5.87
352 353 0.580104 GTTGTTTGTGCTAGTCGCGT 59.420 50.000 5.77 0.00 43.27 6.01
353 354 0.579630 TTGTTTGTGCTAGTCGCGTG 59.420 50.000 5.77 0.00 43.27 5.34
354 355 1.154654 GTTTGTGCTAGTCGCGTGC 60.155 57.895 5.77 7.59 43.27 5.34
355 356 2.653967 TTTGTGCTAGTCGCGTGCG 61.654 57.895 5.77 8.14 43.27 5.34
360 361 2.099638 CTAGTCGCGTGCGCTGTA 59.900 61.111 9.73 0.00 39.59 2.74
361 362 1.513373 CTAGTCGCGTGCGCTGTAA 60.513 57.895 9.73 0.00 39.59 2.41
362 363 1.730593 CTAGTCGCGTGCGCTGTAAC 61.731 60.000 9.73 2.01 39.59 2.50
363 364 2.191354 TAGTCGCGTGCGCTGTAACT 62.191 55.000 9.73 9.83 39.59 2.24
364 365 2.355363 TCGCGTGCGCTGTAACTT 60.355 55.556 9.73 0.00 39.59 2.66
365 366 1.952133 TCGCGTGCGCTGTAACTTT 60.952 52.632 9.73 0.00 39.59 2.66
366 367 0.663867 TCGCGTGCGCTGTAACTTTA 60.664 50.000 9.73 0.00 39.59 1.85
367 368 0.246757 CGCGTGCGCTGTAACTTTAG 60.247 55.000 9.73 0.00 39.32 1.85
368 369 0.518559 GCGTGCGCTGTAACTTTAGC 60.519 55.000 9.73 0.00 38.26 3.09
373 374 3.969795 GCTGTAACTTTAGCGTGCC 57.030 52.632 0.00 0.00 0.00 5.01
374 375 1.439679 GCTGTAACTTTAGCGTGCCT 58.560 50.000 0.00 0.00 0.00 4.75
375 376 1.128692 GCTGTAACTTTAGCGTGCCTG 59.871 52.381 0.00 0.00 0.00 4.85
376 377 1.128692 CTGTAACTTTAGCGTGCCTGC 59.871 52.381 0.00 0.00 0.00 4.85
378 379 1.128692 GTAACTTTAGCGTGCCTGCTG 59.871 52.381 9.82 0.00 46.70 4.41
379 380 1.237285 AACTTTAGCGTGCCTGCTGG 61.237 55.000 5.03 5.03 46.70 4.85
380 381 1.375908 CTTTAGCGTGCCTGCTGGA 60.376 57.895 14.77 0.00 46.70 3.86
381 382 1.364626 CTTTAGCGTGCCTGCTGGAG 61.365 60.000 14.77 4.89 46.70 3.86
382 383 2.111999 TTTAGCGTGCCTGCTGGAGT 62.112 55.000 14.77 0.00 46.70 3.85
383 384 2.786539 TTAGCGTGCCTGCTGGAGTG 62.787 60.000 14.77 2.50 46.70 3.51
385 386 4.694233 CGTGCCTGCTGGAGTGCT 62.694 66.667 14.77 0.00 34.57 4.40
386 387 2.665000 GTGCCTGCTGGAGTGCTA 59.335 61.111 14.77 0.00 34.57 3.49
387 388 1.743252 GTGCCTGCTGGAGTGCTAC 60.743 63.158 14.77 0.00 34.57 3.58
388 389 2.124942 GCCTGCTGGAGTGCTACC 60.125 66.667 14.77 0.00 34.57 3.18
389 390 2.664081 GCCTGCTGGAGTGCTACCT 61.664 63.158 14.77 0.00 34.57 3.08
390 391 1.220206 CCTGCTGGAGTGCTACCTG 59.780 63.158 2.92 0.00 34.57 4.00
392 393 2.510238 GCTGGAGTGCTACCTGCG 60.510 66.667 0.00 0.00 46.63 5.18
393 394 3.006756 GCTGGAGTGCTACCTGCGA 62.007 63.158 0.00 0.00 46.63 5.10
394 395 1.153745 CTGGAGTGCTACCTGCGAC 60.154 63.158 0.00 0.00 46.63 5.19
395 396 2.202623 GGAGTGCTACCTGCGACG 60.203 66.667 0.00 0.00 46.63 5.12
396 397 2.567049 GAGTGCTACCTGCGACGT 59.433 61.111 0.00 0.00 46.63 4.34
397 398 1.801913 GAGTGCTACCTGCGACGTG 60.802 63.158 0.00 0.00 46.63 4.49
398 399 2.196382 GAGTGCTACCTGCGACGTGA 62.196 60.000 0.00 0.00 46.63 4.35
399 400 1.372499 GTGCTACCTGCGACGTGAA 60.372 57.895 0.00 0.00 46.63 3.18
400 401 0.942410 GTGCTACCTGCGACGTGAAA 60.942 55.000 0.00 0.00 46.63 2.69
401 402 0.037697 TGCTACCTGCGACGTGAAAT 60.038 50.000 0.00 0.00 46.63 2.17
402 403 0.370273 GCTACCTGCGACGTGAAATG 59.630 55.000 0.00 0.00 0.00 2.32
403 404 1.710013 CTACCTGCGACGTGAAATGT 58.290 50.000 0.00 0.00 40.05 2.71
404 405 2.871133 CTACCTGCGACGTGAAATGTA 58.129 47.619 0.00 0.00 35.18 2.29
405 406 1.710013 ACCTGCGACGTGAAATGTAG 58.290 50.000 0.00 0.00 35.18 2.74
407 408 4.925786 GCGACGTGAAATGTAGCG 57.074 55.556 0.00 0.00 44.19 4.26
408 409 2.067616 GCGACGTGAAATGTAGCGT 58.932 52.632 0.00 0.00 44.19 5.07
409 410 0.437295 GCGACGTGAAATGTAGCGTT 59.563 50.000 0.00 0.00 44.19 4.84
410 411 1.136446 GCGACGTGAAATGTAGCGTTT 60.136 47.619 0.00 0.00 44.19 3.60
411 412 2.743172 CGACGTGAAATGTAGCGTTTC 58.257 47.619 0.00 6.82 35.18 2.78
412 413 2.407361 CGACGTGAAATGTAGCGTTTCT 59.593 45.455 12.97 0.00 39.34 2.52
413 414 3.718036 CGACGTGAAATGTAGCGTTTCTG 60.718 47.826 12.97 9.04 39.34 3.02
414 415 2.096417 ACGTGAAATGTAGCGTTTCTGC 60.096 45.455 12.97 6.96 39.34 4.26
416 417 3.366724 CGTGAAATGTAGCGTTTCTGCTA 59.633 43.478 12.97 0.00 45.14 3.49
433 434 2.068519 GCTAAAGCAAAACACATGCCC 58.931 47.619 0.00 0.00 44.91 5.36
434 435 2.547642 GCTAAAGCAAAACACATGCCCA 60.548 45.455 0.00 0.00 44.91 5.36
435 436 2.243602 AAAGCAAAACACATGCCCAG 57.756 45.000 0.00 0.00 44.91 4.45
436 437 0.249996 AAGCAAAACACATGCCCAGC 60.250 50.000 0.00 0.00 44.91 4.85
437 438 2.023223 GCAAAACACATGCCCAGCG 61.023 57.895 0.00 0.00 37.85 5.18
438 439 2.023223 CAAAACACATGCCCAGCGC 61.023 57.895 0.00 0.00 38.31 5.92
439 440 3.556543 AAAACACATGCCCAGCGCG 62.557 57.895 0.00 0.00 42.08 6.86
455 456 4.600517 CGCGAAAACGCTACTTCG 57.399 55.556 0.00 6.57 45.58 3.79
456 457 1.056750 CGCGAAAACGCTACTTCGG 59.943 57.895 0.00 1.22 43.57 4.30
457 458 1.225664 GCGAAAACGCTACTTCGGC 60.226 57.895 7.35 2.90 43.57 5.54
458 459 1.893168 GCGAAAACGCTACTTCGGCA 61.893 55.000 7.35 0.00 43.57 5.69
459 460 0.179258 CGAAAACGCTACTTCGGCAC 60.179 55.000 3.75 0.00 40.52 5.01
460 461 1.145803 GAAAACGCTACTTCGGCACT 58.854 50.000 0.00 0.00 0.00 4.40
461 462 0.865769 AAAACGCTACTTCGGCACTG 59.134 50.000 0.00 0.00 0.00 3.66
462 463 0.249741 AAACGCTACTTCGGCACTGT 60.250 50.000 0.00 0.00 0.00 3.55
463 464 0.599558 AACGCTACTTCGGCACTGTA 59.400 50.000 0.00 0.00 0.00 2.74
464 465 0.599558 ACGCTACTTCGGCACTGTAA 59.400 50.000 0.00 0.00 0.00 2.41
465 466 1.000060 ACGCTACTTCGGCACTGTAAA 60.000 47.619 0.00 0.00 0.00 2.01
466 467 2.063266 CGCTACTTCGGCACTGTAAAA 58.937 47.619 0.00 0.00 0.00 1.52
467 468 2.092211 CGCTACTTCGGCACTGTAAAAG 59.908 50.000 0.00 0.00 0.00 2.27
468 469 3.064931 GCTACTTCGGCACTGTAAAAGT 58.935 45.455 0.00 0.00 40.93 2.66
469 470 3.497262 GCTACTTCGGCACTGTAAAAGTT 59.503 43.478 0.00 0.00 36.83 2.66
470 471 4.024302 GCTACTTCGGCACTGTAAAAGTTT 60.024 41.667 0.00 0.00 36.83 2.66
471 472 4.976224 ACTTCGGCACTGTAAAAGTTTT 57.024 36.364 6.06 6.06 36.83 2.43
472 473 5.319140 ACTTCGGCACTGTAAAAGTTTTT 57.681 34.783 6.10 0.00 36.83 1.94
501 502 4.415501 GCGAGCGTGCGTCTGTTG 62.416 66.667 0.00 0.00 0.00 3.33
502 503 2.729491 CGAGCGTGCGTCTGTTGA 60.729 61.111 0.00 0.00 0.00 3.18
503 504 2.710971 CGAGCGTGCGTCTGTTGAG 61.711 63.158 0.00 0.00 0.00 3.02
504 505 2.356313 AGCGTGCGTCTGTTGAGG 60.356 61.111 0.00 0.00 0.00 3.86
505 506 2.355837 GCGTGCGTCTGTTGAGGA 60.356 61.111 0.00 0.00 0.00 3.71
506 507 1.738099 GCGTGCGTCTGTTGAGGAT 60.738 57.895 0.00 0.00 0.00 3.24
507 508 1.959899 GCGTGCGTCTGTTGAGGATG 61.960 60.000 0.00 0.00 0.00 3.51
508 509 1.790387 GTGCGTCTGTTGAGGATGC 59.210 57.895 0.00 0.00 43.60 3.91
509 510 0.671781 GTGCGTCTGTTGAGGATGCT 60.672 55.000 8.91 0.00 43.66 3.79
510 511 0.390340 TGCGTCTGTTGAGGATGCTC 60.390 55.000 7.39 7.39 43.66 4.26
511 512 0.108424 GCGTCTGTTGAGGATGCTCT 60.108 55.000 15.82 0.00 41.08 4.09
512 513 1.674221 GCGTCTGTTGAGGATGCTCTT 60.674 52.381 15.82 0.00 41.08 2.85
513 514 2.417379 GCGTCTGTTGAGGATGCTCTTA 60.417 50.000 15.82 0.69 41.08 2.10
514 515 3.182967 CGTCTGTTGAGGATGCTCTTAC 58.817 50.000 15.82 13.19 0.00 2.34
515 516 3.367395 CGTCTGTTGAGGATGCTCTTACA 60.367 47.826 15.82 16.61 0.00 2.41
516 517 3.929610 GTCTGTTGAGGATGCTCTTACAC 59.070 47.826 15.82 7.48 0.00 2.90
517 518 3.834813 TCTGTTGAGGATGCTCTTACACT 59.165 43.478 15.82 0.00 0.00 3.55
518 519 4.284490 TCTGTTGAGGATGCTCTTACACTT 59.716 41.667 15.82 0.00 0.00 3.16
519 520 4.318332 TGTTGAGGATGCTCTTACACTTG 58.682 43.478 15.82 0.00 0.00 3.16
520 521 2.977914 TGAGGATGCTCTTACACTTGC 58.022 47.619 15.82 0.00 0.00 4.01
521 522 2.284190 GAGGATGCTCTTACACTTGCC 58.716 52.381 7.03 0.00 0.00 4.52
522 523 1.912043 AGGATGCTCTTACACTTGCCT 59.088 47.619 0.00 0.00 0.00 4.75
523 524 2.307098 AGGATGCTCTTACACTTGCCTT 59.693 45.455 0.00 0.00 0.00 4.35
524 525 2.421424 GGATGCTCTTACACTTGCCTTG 59.579 50.000 0.00 0.00 0.00 3.61
525 526 1.238439 TGCTCTTACACTTGCCTTGC 58.762 50.000 0.00 0.00 0.00 4.01
526 527 1.202806 TGCTCTTACACTTGCCTTGCT 60.203 47.619 0.00 0.00 0.00 3.91
527 528 2.038426 TGCTCTTACACTTGCCTTGCTA 59.962 45.455 0.00 0.00 0.00 3.49
528 529 3.274288 GCTCTTACACTTGCCTTGCTAT 58.726 45.455 0.00 0.00 0.00 2.97
529 530 3.064545 GCTCTTACACTTGCCTTGCTATG 59.935 47.826 0.00 0.00 0.00 2.23
530 531 3.009723 TCTTACACTTGCCTTGCTATGC 58.990 45.455 0.00 0.00 0.00 3.14
531 532 2.787473 TACACTTGCCTTGCTATGCT 57.213 45.000 0.00 0.00 0.00 3.79
532 533 2.787473 ACACTTGCCTTGCTATGCTA 57.213 45.000 0.00 0.00 0.00 3.49
533 534 2.636830 ACACTTGCCTTGCTATGCTAG 58.363 47.619 5.56 5.56 36.58 3.42
534 535 2.026822 ACACTTGCCTTGCTATGCTAGT 60.027 45.455 6.68 6.68 42.78 2.57
535 536 3.197766 ACACTTGCCTTGCTATGCTAGTA 59.802 43.478 11.02 0.00 40.66 1.82
536 537 3.557595 CACTTGCCTTGCTATGCTAGTAC 59.442 47.826 11.02 0.00 40.66 2.73
537 538 3.452627 ACTTGCCTTGCTATGCTAGTACT 59.547 43.478 9.98 0.00 40.79 2.73
538 539 4.649674 ACTTGCCTTGCTATGCTAGTACTA 59.350 41.667 9.98 1.89 40.79 1.82
539 540 5.305644 ACTTGCCTTGCTATGCTAGTACTAT 59.694 40.000 9.98 0.00 40.79 2.12
540 541 5.808366 TGCCTTGCTATGCTAGTACTATT 57.192 39.130 2.33 0.00 30.04 1.73
541 542 6.911250 TGCCTTGCTATGCTAGTACTATTA 57.089 37.500 2.33 0.00 30.04 0.98
542 543 7.297936 TGCCTTGCTATGCTAGTACTATTAA 57.702 36.000 2.33 0.00 30.04 1.40
543 544 7.907389 TGCCTTGCTATGCTAGTACTATTAAT 58.093 34.615 2.33 0.73 30.04 1.40
544 545 7.819415 TGCCTTGCTATGCTAGTACTATTAATG 59.181 37.037 2.33 0.00 30.04 1.90
545 546 7.819900 GCCTTGCTATGCTAGTACTATTAATGT 59.180 37.037 2.33 0.00 30.04 2.71
549 550 8.746530 TGCTATGCTAGTACTATTAATGTACCC 58.253 37.037 17.34 10.94 40.61 3.69
550 551 8.968969 GCTATGCTAGTACTATTAATGTACCCT 58.031 37.037 17.34 8.57 40.61 4.34
553 554 8.543293 TGCTAGTACTATTAATGTACCCTTGT 57.457 34.615 17.34 7.65 40.61 3.16
554 555 9.645128 TGCTAGTACTATTAATGTACCCTTGTA 57.355 33.333 17.34 8.13 40.61 2.41
557 558 7.960262 AGTACTATTAATGTACCCTTGTAGGC 58.040 38.462 17.34 0.00 40.61 3.93
558 559 7.788385 AGTACTATTAATGTACCCTTGTAGGCT 59.212 37.037 17.34 0.00 40.61 4.58
559 560 7.447510 ACTATTAATGTACCCTTGTAGGCTT 57.552 36.000 0.00 0.00 32.73 4.35
560 561 7.280356 ACTATTAATGTACCCTTGTAGGCTTG 58.720 38.462 0.00 0.00 32.73 4.01
561 562 5.508280 TTAATGTACCCTTGTAGGCTTGT 57.492 39.130 0.00 0.00 32.73 3.16
562 563 6.623979 TTAATGTACCCTTGTAGGCTTGTA 57.376 37.500 0.00 0.00 32.73 2.41
563 564 3.967332 TGTACCCTTGTAGGCTTGTAC 57.033 47.619 0.00 0.00 33.71 2.90
564 565 3.513517 TGTACCCTTGTAGGCTTGTACT 58.486 45.455 0.00 0.00 34.03 2.73
565 566 4.676109 TGTACCCTTGTAGGCTTGTACTA 58.324 43.478 0.00 0.00 34.03 1.82
566 567 5.085920 TGTACCCTTGTAGGCTTGTACTAA 58.914 41.667 0.00 0.00 34.03 2.24
620 621 0.465460 ACACCACATGTCGCCAACTT 60.465 50.000 0.00 0.00 36.54 2.66
631 632 0.387622 CGCCAACTTGCCATCACTTG 60.388 55.000 0.00 0.00 0.00 3.16
639 640 3.578456 CCATCACTTGGCGTGTCC 58.422 61.111 0.00 0.00 44.16 4.02
640 641 2.390599 CCATCACTTGGCGTGTCCG 61.391 63.158 0.00 0.00 44.16 4.79
641 642 2.047274 ATCACTTGGCGTGTCCGG 60.047 61.111 0.00 0.00 44.16 5.14
674 675 3.304391 GCGTTTGTTTTGGCATCAGAGTA 60.304 43.478 0.00 0.00 0.00 2.59
705 706 0.512952 ATTGACAAAGACACGCGAGC 59.487 50.000 15.93 0.75 0.00 5.03
795 799 2.951475 AAACAGCTGGGCGGACGAAA 62.951 55.000 19.93 0.00 0.00 3.46
805 809 2.556287 GGACGAAAACTGCCTGCG 59.444 61.111 0.00 0.00 0.00 5.18
839 843 2.175202 TGTTACCATGGGAATTGGCAC 58.825 47.619 13.95 0.00 37.81 5.01
853 857 1.438651 TGGCACAGATTTAGTCGTGC 58.561 50.000 12.97 12.97 46.69 5.34
872 876 7.752239 AGTCGTGCTGATTTGATTTCTAATTTG 59.248 33.333 0.00 0.00 0.00 2.32
873 877 7.750458 GTCGTGCTGATTTGATTTCTAATTTGA 59.250 33.333 0.00 0.00 0.00 2.69
874 878 8.461222 TCGTGCTGATTTGATTTCTAATTTGAT 58.539 29.630 0.00 0.00 0.00 2.57
918 933 2.675844 CGATCCACGCCATCTTGTTTTA 59.324 45.455 0.00 0.00 34.51 1.52
992 1007 1.889454 CTCCTCTGAGCAGCGAAGT 59.111 57.895 0.00 0.00 0.00 3.01
995 1010 0.527385 CCTCTGAGCAGCGAAGTAGC 60.527 60.000 0.00 0.00 37.41 3.58
1086 1101 3.239253 AACCCGGCCGTCAAGAGT 61.239 61.111 26.12 8.35 0.00 3.24
1122 1137 2.746375 CGCCTGCCCCTACATCCTT 61.746 63.158 0.00 0.00 0.00 3.36
1153 1168 6.589830 ACGTACGTACATAGTAGTACAAGG 57.410 41.667 21.41 6.27 43.49 3.61
1154 1169 5.006746 ACGTACGTACATAGTAGTACAAGGC 59.993 44.000 21.41 0.00 43.49 4.35
1155 1170 4.907879 ACGTACATAGTAGTACAAGGCC 57.092 45.455 2.52 0.00 43.49 5.19
1397 1449 3.823330 CTCGCCGACGCCTACCTT 61.823 66.667 0.00 0.00 39.84 3.50
1464 1516 2.036098 TCGGGCTCCTCACGGTTA 59.964 61.111 0.00 0.00 0.00 2.85
1750 1802 4.840005 GGAGCACTACGGCTGGGC 62.840 72.222 0.00 0.00 45.99 5.36
1946 2004 2.096248 GAGACGATGGACAAGGAGTCT 58.904 52.381 0.00 0.00 46.72 3.24
2003 2061 2.833794 CAGTTCAGGTTCCTCGACAAA 58.166 47.619 0.00 0.00 0.00 2.83
2222 2283 2.190578 GCCCACTTCTCCATCCCG 59.809 66.667 0.00 0.00 0.00 5.14
2250 2311 4.447290 CTCTCTCTCTATCTTCGACACCA 58.553 47.826 0.00 0.00 0.00 4.17
2279 2340 3.480133 GCCTGGGTGCCCGTCTAT 61.480 66.667 2.44 0.00 39.42 1.98
2414 2479 2.492090 GTGCTCGAGCTCATCCGT 59.508 61.111 35.27 0.00 42.66 4.69
2705 2770 1.221021 GATCCCGGCGAAGAACCTT 59.779 57.895 9.30 0.00 0.00 3.50
2789 2854 1.692519 GTCTACCTACCCATCGCCAAT 59.307 52.381 0.00 0.00 0.00 3.16
2848 2913 0.736325 CAGGACGCCAACGAAGTAGG 60.736 60.000 0.00 0.00 45.00 3.18
2853 2918 0.999406 CGCCAACGAAGTAGGTGATG 59.001 55.000 0.00 0.00 45.00 3.07
2854 2919 1.369625 GCCAACGAAGTAGGTGATGG 58.630 55.000 0.00 0.00 45.00 3.51
2857 2922 3.000727 CCAACGAAGTAGGTGATGGTTC 58.999 50.000 0.00 0.00 45.00 3.62
2861 2926 2.163815 CGAAGTAGGTGATGGTTCGACT 59.836 50.000 0.00 0.00 41.96 4.18
2862 2927 3.512680 GAAGTAGGTGATGGTTCGACTG 58.487 50.000 0.00 0.00 0.00 3.51
2912 2983 4.392921 CCAAGTAGGTGATGATTCGACT 57.607 45.455 0.00 0.00 0.00 4.18
2950 3021 0.736325 CAGGACGCCAACGAAGTAGG 60.736 60.000 0.00 0.00 45.00 3.18
3243 3327 2.441348 TCGCTGCTCCCATACCGA 60.441 61.111 0.00 0.00 0.00 4.69
3258 3342 4.808649 CGAAGTCGGCCTTACCTC 57.191 61.111 0.00 0.00 35.61 3.85
3304 3388 1.089920 GCATGTGCACCTAAGGACTG 58.910 55.000 15.69 0.41 41.59 3.51
3331 3415 0.719465 GGAGCCACGTTCGTAACATG 59.281 55.000 0.00 0.00 0.00 3.21
3332 3416 1.425412 GAGCCACGTTCGTAACATGT 58.575 50.000 0.00 0.00 0.00 3.21
3333 3417 1.389106 GAGCCACGTTCGTAACATGTC 59.611 52.381 0.00 0.00 0.00 3.06
3334 3418 1.141645 GCCACGTTCGTAACATGTCA 58.858 50.000 0.00 0.00 0.00 3.58
3335 3419 1.730064 GCCACGTTCGTAACATGTCAT 59.270 47.619 0.00 0.00 0.00 3.06
3336 3420 2.222729 GCCACGTTCGTAACATGTCATC 60.223 50.000 0.00 0.00 0.00 2.92
3337 3421 3.250744 CCACGTTCGTAACATGTCATCT 58.749 45.455 0.00 0.00 0.00 2.90
3338 3422 3.060761 CCACGTTCGTAACATGTCATCTG 59.939 47.826 0.00 0.00 0.00 2.90
3339 3423 3.060761 CACGTTCGTAACATGTCATCTGG 59.939 47.826 0.00 0.00 0.00 3.86
3340 3424 2.029244 CGTTCGTAACATGTCATCTGGC 59.971 50.000 0.00 0.00 0.00 4.85
3341 3425 2.309528 TCGTAACATGTCATCTGGCC 57.690 50.000 0.00 0.00 0.00 5.36
3342 3426 1.552792 TCGTAACATGTCATCTGGCCA 59.447 47.619 4.71 4.71 0.00 5.36
3343 3427 2.027653 TCGTAACATGTCATCTGGCCAA 60.028 45.455 7.01 0.00 0.00 4.52
3344 3428 2.945008 CGTAACATGTCATCTGGCCAAT 59.055 45.455 7.01 0.08 0.00 3.16
3345 3429 3.002656 CGTAACATGTCATCTGGCCAATC 59.997 47.826 7.01 0.00 0.00 2.67
3346 3430 2.812836 ACATGTCATCTGGCCAATCA 57.187 45.000 7.01 2.05 0.00 2.57
3347 3431 2.651455 ACATGTCATCTGGCCAATCAG 58.349 47.619 7.01 0.00 36.17 2.90
3348 3432 1.954382 CATGTCATCTGGCCAATCAGG 59.046 52.381 7.01 0.00 41.84 3.86
3349 3433 0.994247 TGTCATCTGGCCAATCAGGT 59.006 50.000 7.01 0.00 40.61 4.00
3350 3434 1.355381 TGTCATCTGGCCAATCAGGTT 59.645 47.619 7.01 0.00 40.61 3.50
3351 3435 2.575735 TGTCATCTGGCCAATCAGGTTA 59.424 45.455 7.01 0.00 40.61 2.85
3352 3436 3.202818 TGTCATCTGGCCAATCAGGTTAT 59.797 43.478 7.01 0.00 40.61 1.89
3353 3437 4.411869 TGTCATCTGGCCAATCAGGTTATA 59.588 41.667 7.01 0.00 40.61 0.98
3354 3438 5.104151 TGTCATCTGGCCAATCAGGTTATAA 60.104 40.000 7.01 0.00 40.61 0.98
3355 3439 5.827797 GTCATCTGGCCAATCAGGTTATAAA 59.172 40.000 7.01 0.00 40.61 1.40
3420 3529 0.611200 CCATCACCAACTCGTACCCA 59.389 55.000 0.00 0.00 0.00 4.51
3422 3531 2.279741 CATCACCAACTCGTACCCATG 58.720 52.381 0.00 0.00 0.00 3.66
3436 3545 4.183686 CATGCAAGAAGGCCGCCG 62.184 66.667 3.05 0.00 0.00 6.46
3620 3729 7.898918 AGGAAAATCATGAACATTCATTGACA 58.101 30.769 15.88 0.00 45.13 3.58
3678 3787 9.606631 TTACAAAGATTAACCAAAAGTGCAAAT 57.393 25.926 0.00 0.00 0.00 2.32
3961 4095 9.872684 AATAATGAATCCTAGAATGTGGTCATT 57.127 29.630 0.00 0.00 45.57 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.674057 CCCTCCTCCACACTCACAC 59.326 63.158 0.00 0.00 0.00 3.82
42 43 2.217038 GCCCTCCTCCACACTCACA 61.217 63.158 0.00 0.00 0.00 3.58
43 44 1.915769 AGCCCTCCTCCACACTCAC 60.916 63.158 0.00 0.00 0.00 3.51
44 45 1.915266 CAGCCCTCCTCCACACTCA 60.915 63.158 0.00 0.00 0.00 3.41
45 46 1.915769 ACAGCCCTCCTCCACACTC 60.916 63.158 0.00 0.00 0.00 3.51
46 47 2.205462 ACAGCCCTCCTCCACACT 59.795 61.111 0.00 0.00 0.00 3.55
47 48 2.177594 CTCACAGCCCTCCTCCACAC 62.178 65.000 0.00 0.00 0.00 3.82
48 49 1.915266 CTCACAGCCCTCCTCCACA 60.915 63.158 0.00 0.00 0.00 4.17
49 50 2.664081 CCTCACAGCCCTCCTCCAC 61.664 68.421 0.00 0.00 0.00 4.02
50 51 2.284921 CCTCACAGCCCTCCTCCA 60.285 66.667 0.00 0.00 0.00 3.86
51 52 3.086600 CCCTCACAGCCCTCCTCC 61.087 72.222 0.00 0.00 0.00 4.30
52 53 2.284995 ACCCTCACAGCCCTCCTC 60.285 66.667 0.00 0.00 0.00 3.71
53 54 2.608988 CACCCTCACAGCCCTCCT 60.609 66.667 0.00 0.00 0.00 3.69
54 55 3.721706 CCACCCTCACAGCCCTCC 61.722 72.222 0.00 0.00 0.00 4.30
55 56 4.416738 GCCACCCTCACAGCCCTC 62.417 72.222 0.00 0.00 0.00 4.30
60 61 2.484287 AAATCGGGCCACCCTCACAG 62.484 60.000 4.39 0.00 42.67 3.66
61 62 1.202099 TAAATCGGGCCACCCTCACA 61.202 55.000 4.39 0.00 42.67 3.58
62 63 0.182775 ATAAATCGGGCCACCCTCAC 59.817 55.000 4.39 0.00 42.67 3.51
63 64 0.923358 AATAAATCGGGCCACCCTCA 59.077 50.000 4.39 0.00 42.67 3.86
64 65 1.318576 CAATAAATCGGGCCACCCTC 58.681 55.000 4.39 0.00 42.67 4.30
65 66 0.106217 CCAATAAATCGGGCCACCCT 60.106 55.000 4.39 0.00 42.67 4.34
66 67 1.744320 GCCAATAAATCGGGCCACCC 61.744 60.000 4.39 0.00 41.90 4.61
67 68 1.739667 GCCAATAAATCGGGCCACC 59.260 57.895 4.39 0.00 41.90 4.61
71 72 1.152546 AGGGGCCAATAAATCGGGC 60.153 57.895 4.39 0.00 46.99 6.13
72 73 0.106217 ACAGGGGCCAATAAATCGGG 60.106 55.000 4.39 0.00 0.00 5.14
73 74 1.318576 GACAGGGGCCAATAAATCGG 58.681 55.000 4.39 0.00 0.00 4.18
74 75 2.051334 TGACAGGGGCCAATAAATCG 57.949 50.000 4.39 0.00 0.00 3.34
75 76 4.082026 GCATATGACAGGGGCCAATAAATC 60.082 45.833 6.97 0.00 0.00 2.17
76 77 3.834231 GCATATGACAGGGGCCAATAAAT 59.166 43.478 6.97 0.00 0.00 1.40
77 78 3.230134 GCATATGACAGGGGCCAATAAA 58.770 45.455 6.97 0.00 0.00 1.40
78 79 2.490718 GGCATATGACAGGGGCCAATAA 60.491 50.000 6.97 0.00 44.01 1.40
79 80 1.075374 GGCATATGACAGGGGCCAATA 59.925 52.381 6.97 0.00 44.01 1.90
80 81 0.178953 GGCATATGACAGGGGCCAAT 60.179 55.000 6.97 0.00 44.01 3.16
81 82 1.229927 GGCATATGACAGGGGCCAA 59.770 57.895 6.97 0.00 44.01 4.52
82 83 2.926250 GGCATATGACAGGGGCCA 59.074 61.111 6.97 0.00 44.01 5.36
83 84 0.178953 AATGGCATATGACAGGGGCC 60.179 55.000 17.98 4.15 44.82 5.80
84 85 1.251251 GAATGGCATATGACAGGGGC 58.749 55.000 17.98 2.34 35.91 5.80
85 86 1.072173 TCGAATGGCATATGACAGGGG 59.928 52.381 17.98 8.19 35.91 4.79
86 87 2.146342 GTCGAATGGCATATGACAGGG 58.854 52.381 17.98 8.55 35.91 4.45
87 88 1.794701 CGTCGAATGGCATATGACAGG 59.205 52.381 17.98 8.91 35.91 4.00
88 89 2.219445 CACGTCGAATGGCATATGACAG 59.781 50.000 17.98 19.10 35.91 3.51
89 90 2.200899 CACGTCGAATGGCATATGACA 58.799 47.619 15.09 15.09 37.54 3.58
90 91 1.070577 GCACGTCGAATGGCATATGAC 60.071 52.381 17.46 17.46 0.00 3.06
91 92 1.217001 GCACGTCGAATGGCATATGA 58.783 50.000 6.97 0.00 0.00 2.15
92 93 0.235665 GGCACGTCGAATGGCATATG 59.764 55.000 16.84 0.00 42.03 1.78
93 94 0.179059 TGGCACGTCGAATGGCATAT 60.179 50.000 19.58 0.00 46.63 1.78
94 95 1.219393 TGGCACGTCGAATGGCATA 59.781 52.632 19.58 2.51 46.63 3.14
95 96 2.046411 TGGCACGTCGAATGGCAT 60.046 55.556 19.58 0.00 46.63 4.40
97 98 1.001745 GTTTTGGCACGTCGAATGGC 61.002 55.000 15.37 15.37 42.74 4.40
98 99 0.724453 CGTTTTGGCACGTCGAATGG 60.724 55.000 0.00 0.00 35.34 3.16
99 100 1.327292 GCGTTTTGGCACGTCGAATG 61.327 55.000 0.00 0.00 42.43 2.67
100 101 1.082366 GCGTTTTGGCACGTCGAAT 60.082 52.632 0.00 0.00 42.43 3.34
101 102 2.325166 GCGTTTTGGCACGTCGAA 59.675 55.556 0.00 0.00 42.43 3.71
102 103 2.890961 TGCGTTTTGGCACGTCGA 60.891 55.556 0.00 0.00 42.43 4.20
109 110 2.791004 GCAGATCATTATGCGTTTTGGC 59.209 45.455 0.00 0.00 31.87 4.52
110 111 4.031418 TGCAGATCATTATGCGTTTTGG 57.969 40.909 0.00 0.00 45.54 3.28
111 112 6.308524 TCTTTTGCAGATCATTATGCGTTTTG 59.691 34.615 0.00 0.00 45.54 2.44
112 113 6.389091 TCTTTTGCAGATCATTATGCGTTTT 58.611 32.000 0.00 0.00 45.54 2.43
113 114 5.953183 TCTTTTGCAGATCATTATGCGTTT 58.047 33.333 0.00 0.00 45.54 3.60
114 115 5.565592 TCTTTTGCAGATCATTATGCGTT 57.434 34.783 0.00 0.00 45.54 4.84
115 116 5.565592 TTCTTTTGCAGATCATTATGCGT 57.434 34.783 0.00 0.00 45.54 5.24
116 117 6.436261 AGATTCTTTTGCAGATCATTATGCG 58.564 36.000 0.00 0.00 45.54 4.73
117 118 9.909644 ATTAGATTCTTTTGCAGATCATTATGC 57.090 29.630 0.00 0.00 42.86 3.14
120 121 9.546428 TCGATTAGATTCTTTTGCAGATCATTA 57.454 29.630 0.00 0.00 0.00 1.90
121 122 8.442632 TCGATTAGATTCTTTTGCAGATCATT 57.557 30.769 0.00 0.00 0.00 2.57
122 123 7.172875 CCTCGATTAGATTCTTTTGCAGATCAT 59.827 37.037 0.00 0.00 0.00 2.45
123 124 6.481313 CCTCGATTAGATTCTTTTGCAGATCA 59.519 38.462 0.00 0.00 0.00 2.92
124 125 6.703607 TCCTCGATTAGATTCTTTTGCAGATC 59.296 38.462 0.00 0.00 0.00 2.75
125 126 6.586344 TCCTCGATTAGATTCTTTTGCAGAT 58.414 36.000 0.00 0.00 0.00 2.90
126 127 5.977635 TCCTCGATTAGATTCTTTTGCAGA 58.022 37.500 0.00 0.00 0.00 4.26
127 128 5.814705 ACTCCTCGATTAGATTCTTTTGCAG 59.185 40.000 0.00 0.00 0.00 4.41
128 129 5.582269 CACTCCTCGATTAGATTCTTTTGCA 59.418 40.000 0.00 0.00 0.00 4.08
129 130 5.007136 CCACTCCTCGATTAGATTCTTTTGC 59.993 44.000 0.00 0.00 0.00 3.68
130 131 6.036517 CACCACTCCTCGATTAGATTCTTTTG 59.963 42.308 0.00 0.00 0.00 2.44
131 132 6.109359 CACCACTCCTCGATTAGATTCTTTT 58.891 40.000 0.00 0.00 0.00 2.27
132 133 5.395768 CCACCACTCCTCGATTAGATTCTTT 60.396 44.000 0.00 0.00 0.00 2.52
133 134 4.100189 CCACCACTCCTCGATTAGATTCTT 59.900 45.833 0.00 0.00 0.00 2.52
134 135 3.639094 CCACCACTCCTCGATTAGATTCT 59.361 47.826 1.48 0.00 0.00 2.40
135 136 3.243907 CCCACCACTCCTCGATTAGATTC 60.244 52.174 1.48 0.00 0.00 2.52
136 137 2.700897 CCCACCACTCCTCGATTAGATT 59.299 50.000 1.48 0.00 0.00 2.40
137 138 2.320781 CCCACCACTCCTCGATTAGAT 58.679 52.381 1.48 0.00 0.00 1.98
138 139 1.776662 CCCACCACTCCTCGATTAGA 58.223 55.000 1.48 0.00 0.00 2.10
139 140 0.105039 GCCCACCACTCCTCGATTAG 59.895 60.000 0.00 0.00 0.00 1.73
140 141 0.616395 TGCCCACCACTCCTCGATTA 60.616 55.000 0.00 0.00 0.00 1.75
141 142 1.274703 ATGCCCACCACTCCTCGATT 61.275 55.000 0.00 0.00 0.00 3.34
142 143 1.690633 ATGCCCACCACTCCTCGAT 60.691 57.895 0.00 0.00 0.00 3.59
143 144 2.284625 ATGCCCACCACTCCTCGA 60.285 61.111 0.00 0.00 0.00 4.04
144 145 2.124983 CATGCCCACCACTCCTCG 60.125 66.667 0.00 0.00 0.00 4.63
145 146 1.852157 TTCCATGCCCACCACTCCTC 61.852 60.000 0.00 0.00 0.00 3.71
146 147 1.217057 ATTCCATGCCCACCACTCCT 61.217 55.000 0.00 0.00 0.00 3.69
147 148 1.039233 CATTCCATGCCCACCACTCC 61.039 60.000 0.00 0.00 0.00 3.85
148 149 1.039233 CCATTCCATGCCCACCACTC 61.039 60.000 0.00 0.00 0.00 3.51
149 150 1.000739 CCATTCCATGCCCACCACT 59.999 57.895 0.00 0.00 0.00 4.00
150 151 2.059786 CCCATTCCATGCCCACCAC 61.060 63.158 0.00 0.00 0.00 4.16
151 152 2.363760 CCCATTCCATGCCCACCA 59.636 61.111 0.00 0.00 0.00 4.17
152 153 3.156556 GCCCATTCCATGCCCACC 61.157 66.667 0.00 0.00 0.00 4.61
153 154 3.530260 CGCCCATTCCATGCCCAC 61.530 66.667 0.00 0.00 0.00 4.61
154 155 3.737352 TCGCCCATTCCATGCCCA 61.737 61.111 0.00 0.00 0.00 5.36
155 156 3.219198 GTCGCCCATTCCATGCCC 61.219 66.667 0.00 0.00 0.00 5.36
156 157 1.603236 TTTGTCGCCCATTCCATGCC 61.603 55.000 0.00 0.00 0.00 4.40
157 158 0.246086 TTTTGTCGCCCATTCCATGC 59.754 50.000 0.00 0.00 0.00 4.06
158 159 2.931325 CAATTTTGTCGCCCATTCCATG 59.069 45.455 0.00 0.00 0.00 3.66
159 160 2.093553 CCAATTTTGTCGCCCATTCCAT 60.094 45.455 0.00 0.00 0.00 3.41
160 161 1.274728 CCAATTTTGTCGCCCATTCCA 59.725 47.619 0.00 0.00 0.00 3.53
161 162 1.275010 ACCAATTTTGTCGCCCATTCC 59.725 47.619 0.00 0.00 0.00 3.01
162 163 2.741759 ACCAATTTTGTCGCCCATTC 57.258 45.000 0.00 0.00 0.00 2.67
163 164 3.137533 CAAACCAATTTTGTCGCCCATT 58.862 40.909 0.00 0.00 39.96 3.16
164 165 2.366916 TCAAACCAATTTTGTCGCCCAT 59.633 40.909 0.00 0.00 44.47 4.00
165 166 1.757118 TCAAACCAATTTTGTCGCCCA 59.243 42.857 0.00 0.00 44.47 5.36
166 167 2.517650 TCAAACCAATTTTGTCGCCC 57.482 45.000 0.00 0.00 44.47 6.13
167 168 3.389221 ACATCAAACCAATTTTGTCGCC 58.611 40.909 0.00 0.00 44.47 5.54
168 169 4.269844 ACAACATCAAACCAATTTTGTCGC 59.730 37.500 0.00 0.00 44.47 5.19
169 170 5.964887 ACAACATCAAACCAATTTTGTCG 57.035 34.783 0.00 0.00 44.47 4.35
170 171 8.364129 ACATACAACATCAAACCAATTTTGTC 57.636 30.769 0.00 0.00 44.47 3.18
171 172 8.729805 AACATACAACATCAAACCAATTTTGT 57.270 26.923 0.00 0.00 44.47 2.83
172 173 8.824781 TGAACATACAACATCAAACCAATTTTG 58.175 29.630 0.00 0.00 45.38 2.44
173 174 8.954950 TGAACATACAACATCAAACCAATTTT 57.045 26.923 0.00 0.00 0.00 1.82
174 175 8.420222 TCTGAACATACAACATCAAACCAATTT 58.580 29.630 0.00 0.00 0.00 1.82
175 176 7.950512 TCTGAACATACAACATCAAACCAATT 58.049 30.769 0.00 0.00 0.00 2.32
176 177 7.523293 TCTGAACATACAACATCAAACCAAT 57.477 32.000 0.00 0.00 0.00 3.16
177 178 6.951062 TCTGAACATACAACATCAAACCAA 57.049 33.333 0.00 0.00 0.00 3.67
178 179 6.489700 ACATCTGAACATACAACATCAAACCA 59.510 34.615 0.00 0.00 0.00 3.67
179 180 6.913170 ACATCTGAACATACAACATCAAACC 58.087 36.000 0.00 0.00 0.00 3.27
180 181 7.862372 ACAACATCTGAACATACAACATCAAAC 59.138 33.333 0.00 0.00 0.00 2.93
181 182 7.939782 ACAACATCTGAACATACAACATCAAA 58.060 30.769 0.00 0.00 0.00 2.69
182 183 7.509141 ACAACATCTGAACATACAACATCAA 57.491 32.000 0.00 0.00 0.00 2.57
183 184 8.791327 ATACAACATCTGAACATACAACATCA 57.209 30.769 0.00 0.00 0.00 3.07
184 185 9.494479 CAATACAACATCTGAACATACAACATC 57.506 33.333 0.00 0.00 0.00 3.06
185 186 9.013229 ACAATACAACATCTGAACATACAACAT 57.987 29.630 0.00 0.00 0.00 2.71
186 187 8.389779 ACAATACAACATCTGAACATACAACA 57.610 30.769 0.00 0.00 0.00 3.33
187 188 9.117145 CAACAATACAACATCTGAACATACAAC 57.883 33.333 0.00 0.00 0.00 3.32
188 189 9.061435 TCAACAATACAACATCTGAACATACAA 57.939 29.630 0.00 0.00 0.00 2.41
189 190 8.614469 TCAACAATACAACATCTGAACATACA 57.386 30.769 0.00 0.00 0.00 2.29
190 191 9.329913 GTTCAACAATACAACATCTGAACATAC 57.670 33.333 7.06 0.00 40.41 2.39
191 192 9.283768 AGTTCAACAATACAACATCTGAACATA 57.716 29.630 12.89 0.00 42.18 2.29
192 193 8.169977 AGTTCAACAATACAACATCTGAACAT 57.830 30.769 12.89 0.00 42.18 2.71
193 194 7.566760 AGTTCAACAATACAACATCTGAACA 57.433 32.000 12.89 0.00 42.18 3.18
197 198 9.897744 ACAAATAGTTCAACAATACAACATCTG 57.102 29.630 0.00 0.00 0.00 2.90
208 209 9.522804 GTTCCAATACAACAAATAGTTCAACAA 57.477 29.630 0.00 0.00 38.74 2.83
209 210 8.687242 TGTTCCAATACAACAAATAGTTCAACA 58.313 29.630 0.00 0.00 38.74 3.33
210 211 9.691362 ATGTTCCAATACAACAAATAGTTCAAC 57.309 29.630 0.00 0.00 38.74 3.18
244 245 9.638239 GCTCAATTATTATTCCAACTGAAACAA 57.362 29.630 0.00 0.00 36.33 2.83
245 246 9.023962 AGCTCAATTATTATTCCAACTGAAACA 57.976 29.630 0.00 0.00 36.33 2.83
289 290 6.159988 ACCAAAAAGATCGAACACACAAAAA 58.840 32.000 0.00 0.00 0.00 1.94
290 291 5.715070 ACCAAAAAGATCGAACACACAAAA 58.285 33.333 0.00 0.00 0.00 2.44
291 292 5.317733 ACCAAAAAGATCGAACACACAAA 57.682 34.783 0.00 0.00 0.00 2.83
292 293 4.974368 ACCAAAAAGATCGAACACACAA 57.026 36.364 0.00 0.00 0.00 3.33
293 294 4.974368 AACCAAAAAGATCGAACACACA 57.026 36.364 0.00 0.00 0.00 3.72
294 295 7.434013 ACATAAAACCAAAAAGATCGAACACAC 59.566 33.333 0.00 0.00 0.00 3.82
295 296 7.484975 ACATAAAACCAAAAAGATCGAACACA 58.515 30.769 0.00 0.00 0.00 3.72
296 297 7.924103 ACATAAAACCAAAAAGATCGAACAC 57.076 32.000 0.00 0.00 0.00 3.32
300 301 9.672086 CACTTAACATAAAACCAAAAAGATCGA 57.328 29.630 0.00 0.00 0.00 3.59
301 302 8.911662 CCACTTAACATAAAACCAAAAAGATCG 58.088 33.333 0.00 0.00 0.00 3.69
302 303 9.203421 CCCACTTAACATAAAACCAAAAAGATC 57.797 33.333 0.00 0.00 0.00 2.75
303 304 8.929487 TCCCACTTAACATAAAACCAAAAAGAT 58.071 29.630 0.00 0.00 0.00 2.40
304 305 8.307582 TCCCACTTAACATAAAACCAAAAAGA 57.692 30.769 0.00 0.00 0.00 2.52
305 306 8.950208 TTCCCACTTAACATAAAACCAAAAAG 57.050 30.769 0.00 0.00 0.00 2.27
306 307 9.907229 ATTTCCCACTTAACATAAAACCAAAAA 57.093 25.926 0.00 0.00 0.00 1.94
307 308 9.331282 CATTTCCCACTTAACATAAAACCAAAA 57.669 29.630 0.00 0.00 0.00 2.44
308 309 8.487028 ACATTTCCCACTTAACATAAAACCAAA 58.513 29.630 0.00 0.00 0.00 3.28
309 310 8.024145 ACATTTCCCACTTAACATAAAACCAA 57.976 30.769 0.00 0.00 0.00 3.67
310 311 7.604657 ACATTTCCCACTTAACATAAAACCA 57.395 32.000 0.00 0.00 0.00 3.67
311 312 7.929245 ACAACATTTCCCACTTAACATAAAACC 59.071 33.333 0.00 0.00 0.00 3.27
312 313 8.880878 ACAACATTTCCCACTTAACATAAAAC 57.119 30.769 0.00 0.00 0.00 2.43
313 314 9.892130 AAACAACATTTCCCACTTAACATAAAA 57.108 25.926 0.00 0.00 0.00 1.52
314 315 9.319143 CAAACAACATTTCCCACTTAACATAAA 57.681 29.630 0.00 0.00 0.00 1.40
315 316 8.478877 ACAAACAACATTTCCCACTTAACATAA 58.521 29.630 0.00 0.00 0.00 1.90
316 317 7.923344 CACAAACAACATTTCCCACTTAACATA 59.077 33.333 0.00 0.00 0.00 2.29
317 318 6.760770 CACAAACAACATTTCCCACTTAACAT 59.239 34.615 0.00 0.00 0.00 2.71
318 319 6.102663 CACAAACAACATTTCCCACTTAACA 58.897 36.000 0.00 0.00 0.00 2.41
319 320 5.006261 GCACAAACAACATTTCCCACTTAAC 59.994 40.000 0.00 0.00 0.00 2.01
320 321 5.105146 AGCACAAACAACATTTCCCACTTAA 60.105 36.000 0.00 0.00 0.00 1.85
321 322 4.404073 AGCACAAACAACATTTCCCACTTA 59.596 37.500 0.00 0.00 0.00 2.24
322 323 3.197549 AGCACAAACAACATTTCCCACTT 59.802 39.130 0.00 0.00 0.00 3.16
323 324 2.765699 AGCACAAACAACATTTCCCACT 59.234 40.909 0.00 0.00 0.00 4.00
324 325 3.177997 AGCACAAACAACATTTCCCAC 57.822 42.857 0.00 0.00 0.00 4.61
325 326 3.957497 ACTAGCACAAACAACATTTCCCA 59.043 39.130 0.00 0.00 0.00 4.37
326 327 4.546570 GACTAGCACAAACAACATTTCCC 58.453 43.478 0.00 0.00 0.00 3.97
327 328 4.219033 CGACTAGCACAAACAACATTTCC 58.781 43.478 0.00 0.00 0.00 3.13
349 350 0.518559 GCTAAAGTTACAGCGCACGC 60.519 55.000 11.47 6.99 42.33 5.34
350 351 3.562869 GCTAAAGTTACAGCGCACG 57.437 52.632 11.47 1.85 0.00 5.34
355 356 1.128692 CAGGCACGCTAAAGTTACAGC 59.871 52.381 0.30 0.30 0.00 4.40
356 357 1.128692 GCAGGCACGCTAAAGTTACAG 59.871 52.381 0.00 0.00 0.00 2.74
357 358 1.153353 GCAGGCACGCTAAAGTTACA 58.847 50.000 0.00 0.00 0.00 2.41
358 359 1.128692 CAGCAGGCACGCTAAAGTTAC 59.871 52.381 0.79 0.00 41.38 2.50
359 360 1.438651 CAGCAGGCACGCTAAAGTTA 58.561 50.000 0.79 0.00 41.38 2.24
360 361 1.237285 CCAGCAGGCACGCTAAAGTT 61.237 55.000 0.79 0.00 41.38 2.66
361 362 1.672356 CCAGCAGGCACGCTAAAGT 60.672 57.895 0.79 0.00 41.38 2.66
362 363 1.364626 CTCCAGCAGGCACGCTAAAG 61.365 60.000 0.79 0.00 41.38 1.85
363 364 1.375908 CTCCAGCAGGCACGCTAAA 60.376 57.895 0.79 0.00 41.38 1.85
364 365 2.265739 CTCCAGCAGGCACGCTAA 59.734 61.111 0.79 0.00 41.38 3.09
365 366 2.997315 ACTCCAGCAGGCACGCTA 60.997 61.111 0.79 0.00 41.38 4.26
366 367 4.694233 CACTCCAGCAGGCACGCT 62.694 66.667 0.00 0.00 45.21 5.07
368 369 3.300934 TAGCACTCCAGCAGGCACG 62.301 63.158 0.00 0.00 36.85 5.34
369 370 1.743252 GTAGCACTCCAGCAGGCAC 60.743 63.158 0.00 0.00 36.85 5.01
370 371 2.665000 GTAGCACTCCAGCAGGCA 59.335 61.111 0.00 0.00 36.85 4.75
371 372 2.124942 GGTAGCACTCCAGCAGGC 60.125 66.667 0.00 0.00 36.85 4.85
372 373 1.220206 CAGGTAGCACTCCAGCAGG 59.780 63.158 0.00 0.00 36.85 4.85
373 374 1.449246 GCAGGTAGCACTCCAGCAG 60.449 63.158 0.00 0.00 44.79 4.24
374 375 2.665000 GCAGGTAGCACTCCAGCA 59.335 61.111 0.00 0.00 44.79 4.41
375 376 2.510238 CGCAGGTAGCACTCCAGC 60.510 66.667 0.00 0.00 46.13 4.85
376 377 1.153745 GTCGCAGGTAGCACTCCAG 60.154 63.158 0.00 0.00 46.13 3.86
377 378 2.970639 GTCGCAGGTAGCACTCCA 59.029 61.111 0.00 0.00 46.13 3.86
378 379 2.202623 CGTCGCAGGTAGCACTCC 60.203 66.667 0.00 0.00 46.13 3.85
379 380 1.801913 CACGTCGCAGGTAGCACTC 60.802 63.158 0.00 0.00 46.13 3.51
380 381 1.802337 TTCACGTCGCAGGTAGCACT 61.802 55.000 0.00 0.00 46.13 4.40
381 382 0.942410 TTTCACGTCGCAGGTAGCAC 60.942 55.000 0.00 0.00 46.13 4.40
382 383 0.037697 ATTTCACGTCGCAGGTAGCA 60.038 50.000 0.00 0.00 46.13 3.49
383 384 0.370273 CATTTCACGTCGCAGGTAGC 59.630 55.000 0.00 0.00 40.87 3.58
384 385 1.710013 ACATTTCACGTCGCAGGTAG 58.290 50.000 0.00 0.00 0.00 3.18
385 386 2.871133 CTACATTTCACGTCGCAGGTA 58.129 47.619 0.00 0.00 0.00 3.08
386 387 1.710013 CTACATTTCACGTCGCAGGT 58.290 50.000 0.00 0.00 0.00 4.00
387 388 0.370273 GCTACATTTCACGTCGCAGG 59.630 55.000 0.00 0.00 0.00 4.85
388 389 0.023732 CGCTACATTTCACGTCGCAG 59.976 55.000 0.00 0.00 0.00 5.18
389 390 0.665068 ACGCTACATTTCACGTCGCA 60.665 50.000 0.00 0.00 32.37 5.10
390 391 0.437295 AACGCTACATTTCACGTCGC 59.563 50.000 0.00 0.00 37.87 5.19
391 392 2.407361 AGAAACGCTACATTTCACGTCG 59.593 45.455 0.00 0.00 38.32 5.12
392 393 3.722123 CAGAAACGCTACATTTCACGTC 58.278 45.455 0.00 0.00 38.32 4.34
393 394 2.096417 GCAGAAACGCTACATTTCACGT 60.096 45.455 0.78 0.00 38.32 4.49
394 395 2.157668 AGCAGAAACGCTACATTTCACG 59.842 45.455 0.78 0.00 41.55 4.35
395 396 3.813529 AGCAGAAACGCTACATTTCAC 57.186 42.857 0.78 0.00 41.55 3.18
396 397 5.616866 GCTTTAGCAGAAACGCTACATTTCA 60.617 40.000 0.00 0.00 44.03 2.69
397 398 4.788609 GCTTTAGCAGAAACGCTACATTTC 59.211 41.667 0.00 0.00 44.03 2.17
398 399 4.723248 GCTTTAGCAGAAACGCTACATTT 58.277 39.130 0.00 0.00 44.03 2.32
399 400 4.342352 GCTTTAGCAGAAACGCTACATT 57.658 40.909 0.00 0.00 44.03 2.71
413 414 2.068519 GGGCATGTGTTTTGCTTTAGC 58.931 47.619 0.00 0.00 40.03 3.09
414 415 3.319755 CTGGGCATGTGTTTTGCTTTAG 58.680 45.455 0.00 0.00 40.03 1.85
415 416 2.547642 GCTGGGCATGTGTTTTGCTTTA 60.548 45.455 0.00 0.00 40.03 1.85
416 417 1.811176 GCTGGGCATGTGTTTTGCTTT 60.811 47.619 0.00 0.00 40.03 3.51
417 418 0.249996 GCTGGGCATGTGTTTTGCTT 60.250 50.000 0.00 0.00 40.03 3.91
418 419 1.368579 GCTGGGCATGTGTTTTGCT 59.631 52.632 0.00 0.00 40.03 3.91
419 420 2.023223 CGCTGGGCATGTGTTTTGC 61.023 57.895 0.00 0.00 39.41 3.68
420 421 2.023223 GCGCTGGGCATGTGTTTTG 61.023 57.895 12.19 0.00 42.87 2.44
421 422 2.339712 GCGCTGGGCATGTGTTTT 59.660 55.556 12.19 0.00 42.87 2.43
422 423 4.041917 CGCGCTGGGCATGTGTTT 62.042 61.111 17.13 0.00 43.84 2.83
440 441 0.179258 GTGCCGAAGTAGCGTTTTCG 60.179 55.000 11.02 11.02 44.17 3.46
441 442 1.136336 CAGTGCCGAAGTAGCGTTTTC 60.136 52.381 0.00 0.00 0.00 2.29
442 443 0.865769 CAGTGCCGAAGTAGCGTTTT 59.134 50.000 0.00 0.00 0.00 2.43
443 444 0.249741 ACAGTGCCGAAGTAGCGTTT 60.250 50.000 0.00 0.00 0.00 3.60
444 445 0.599558 TACAGTGCCGAAGTAGCGTT 59.400 50.000 0.00 0.00 0.00 4.84
445 446 0.599558 TTACAGTGCCGAAGTAGCGT 59.400 50.000 0.00 0.00 0.00 5.07
446 447 1.705256 TTTACAGTGCCGAAGTAGCG 58.295 50.000 0.00 0.00 0.00 4.26
447 448 3.064931 ACTTTTACAGTGCCGAAGTAGC 58.935 45.455 4.38 0.00 32.83 3.58
448 449 5.668558 AAACTTTTACAGTGCCGAAGTAG 57.331 39.130 6.17 0.00 35.12 2.57
449 450 6.439675 AAAAACTTTTACAGTGCCGAAGTA 57.560 33.333 6.17 0.00 35.12 2.24
450 451 4.976224 AAAACTTTTACAGTGCCGAAGT 57.024 36.364 0.00 0.00 35.12 3.01
484 485 4.415501 CAACAGACGCACGCTCGC 62.416 66.667 0.00 0.00 0.00 5.03
485 486 2.710971 CTCAACAGACGCACGCTCG 61.711 63.158 0.00 0.00 0.00 5.03
486 487 2.375766 CCTCAACAGACGCACGCTC 61.376 63.158 0.00 0.00 0.00 5.03
487 488 2.159819 ATCCTCAACAGACGCACGCT 62.160 55.000 0.00 0.00 0.00 5.07
488 489 1.738099 ATCCTCAACAGACGCACGC 60.738 57.895 0.00 0.00 0.00 5.34
489 490 1.959899 GCATCCTCAACAGACGCACG 61.960 60.000 0.00 0.00 0.00 5.34
490 491 0.671781 AGCATCCTCAACAGACGCAC 60.672 55.000 0.00 0.00 0.00 5.34
491 492 0.390340 GAGCATCCTCAACAGACGCA 60.390 55.000 0.00 0.00 38.03 5.24
492 493 0.108424 AGAGCATCCTCAACAGACGC 60.108 55.000 0.00 0.00 40.68 5.19
493 494 2.376808 AAGAGCATCCTCAACAGACG 57.623 50.000 0.00 0.00 40.68 4.18
494 495 3.929610 GTGTAAGAGCATCCTCAACAGAC 59.070 47.826 0.00 0.00 40.68 3.51
495 496 3.834813 AGTGTAAGAGCATCCTCAACAGA 59.165 43.478 0.00 0.00 40.68 3.41
496 497 4.199432 AGTGTAAGAGCATCCTCAACAG 57.801 45.455 0.00 0.00 40.68 3.16
497 498 4.318332 CAAGTGTAAGAGCATCCTCAACA 58.682 43.478 0.00 0.00 40.68 3.33
498 499 3.126000 GCAAGTGTAAGAGCATCCTCAAC 59.874 47.826 0.00 0.00 40.68 3.18
499 500 3.338249 GCAAGTGTAAGAGCATCCTCAA 58.662 45.455 0.00 0.00 40.68 3.02
500 501 2.355108 GGCAAGTGTAAGAGCATCCTCA 60.355 50.000 0.00 0.00 40.68 3.86
501 502 2.093235 AGGCAAGTGTAAGAGCATCCTC 60.093 50.000 0.00 0.00 38.42 3.71
502 503 1.912043 AGGCAAGTGTAAGAGCATCCT 59.088 47.619 0.00 0.00 33.66 3.24
503 504 2.409948 AGGCAAGTGTAAGAGCATCC 57.590 50.000 0.00 0.00 33.66 3.51
504 505 2.159462 GCAAGGCAAGTGTAAGAGCATC 60.159 50.000 0.00 0.00 0.00 3.91
505 506 1.815003 GCAAGGCAAGTGTAAGAGCAT 59.185 47.619 0.00 0.00 0.00 3.79
506 507 1.202806 AGCAAGGCAAGTGTAAGAGCA 60.203 47.619 0.00 0.00 0.00 4.26
507 508 1.528129 AGCAAGGCAAGTGTAAGAGC 58.472 50.000 0.00 0.00 0.00 4.09
508 509 3.064545 GCATAGCAAGGCAAGTGTAAGAG 59.935 47.826 0.00 0.00 31.14 2.85
509 510 3.009723 GCATAGCAAGGCAAGTGTAAGA 58.990 45.455 0.00 0.00 31.14 2.10
510 511 3.012518 AGCATAGCAAGGCAAGTGTAAG 58.987 45.455 0.00 0.00 33.96 2.34
511 512 3.071874 AGCATAGCAAGGCAAGTGTAA 57.928 42.857 0.00 0.00 33.96 2.41
512 513 2.787473 AGCATAGCAAGGCAAGTGTA 57.213 45.000 0.00 0.00 33.96 2.90
513 514 2.026822 ACTAGCATAGCAAGGCAAGTGT 60.027 45.455 0.00 0.00 44.39 3.55
514 515 2.636830 ACTAGCATAGCAAGGCAAGTG 58.363 47.619 0.00 0.00 44.39 3.16
515 516 3.452627 AGTACTAGCATAGCAAGGCAAGT 59.547 43.478 0.00 0.00 44.39 3.16
516 517 4.065321 AGTACTAGCATAGCAAGGCAAG 57.935 45.455 0.00 0.00 44.39 4.01
517 518 5.808366 ATAGTACTAGCATAGCAAGGCAA 57.192 39.130 8.85 0.00 44.39 4.52
518 519 5.808366 AATAGTACTAGCATAGCAAGGCA 57.192 39.130 8.85 0.00 44.39 4.75
519 520 7.819900 ACATTAATAGTACTAGCATAGCAAGGC 59.180 37.037 8.85 0.00 44.39 4.35
523 524 8.746530 GGGTACATTAATAGTACTAGCATAGCA 58.253 37.037 18.94 0.00 44.39 3.49
524 525 8.968969 AGGGTACATTAATAGTACTAGCATAGC 58.031 37.037 18.94 4.86 44.39 2.97
527 528 9.155785 ACAAGGGTACATTAATAGTACTAGCAT 57.844 33.333 18.94 0.24 41.16 3.79
528 529 8.543293 ACAAGGGTACATTAATAGTACTAGCA 57.457 34.615 18.94 0.00 41.16 3.49
531 532 9.082313 GCCTACAAGGGTACATTAATAGTACTA 57.918 37.037 18.94 4.77 41.16 1.82
532 533 7.788385 AGCCTACAAGGGTACATTAATAGTACT 59.212 37.037 18.94 0.00 45.76 2.73
533 534 7.960262 AGCCTACAAGGGTACATTAATAGTAC 58.040 38.462 14.66 14.66 45.76 2.73
547 548 5.454329 GGGTATTAGTACAAGCCTACAAGGG 60.454 48.000 0.00 0.00 32.15 3.95
548 549 5.129815 TGGGTATTAGTACAAGCCTACAAGG 59.870 44.000 0.00 0.00 33.64 3.61
549 550 6.229936 TGGGTATTAGTACAAGCCTACAAG 57.770 41.667 0.00 0.00 32.25 3.16
550 551 6.214005 AGTTGGGTATTAGTACAAGCCTACAA 59.786 38.462 16.23 4.61 32.25 2.41
551 552 5.722923 AGTTGGGTATTAGTACAAGCCTACA 59.277 40.000 16.23 0.00 32.25 2.74
552 553 6.231258 AGTTGGGTATTAGTACAAGCCTAC 57.769 41.667 0.00 4.25 32.25 3.18
553 554 6.879367 AAGTTGGGTATTAGTACAAGCCTA 57.121 37.500 0.00 0.00 32.25 3.93
554 555 5.774102 AAGTTGGGTATTAGTACAAGCCT 57.226 39.130 0.00 0.00 32.25 4.58
555 556 5.941647 TGAAAGTTGGGTATTAGTACAAGCC 59.058 40.000 0.00 0.00 32.25 4.35
556 557 6.877322 TCTGAAAGTTGGGTATTAGTACAAGC 59.123 38.462 0.00 0.00 33.76 4.01
557 558 9.099454 GATCTGAAAGTTGGGTATTAGTACAAG 57.901 37.037 0.00 0.00 33.76 3.16
558 559 8.822805 AGATCTGAAAGTTGGGTATTAGTACAA 58.177 33.333 0.00 0.00 33.76 2.41
559 560 8.375493 AGATCTGAAAGTTGGGTATTAGTACA 57.625 34.615 0.00 0.00 33.76 2.90
590 591 5.390613 CGACATGTGGTGTTTATTTCCTTC 58.609 41.667 1.15 0.00 42.36 3.46
674 675 4.910585 GTCAATCGGCCGGCGGAT 62.911 66.667 36.01 36.01 37.55 4.18
718 722 1.008194 TTGGAGTTGACGACGACGG 60.008 57.895 12.58 0.00 44.46 4.79
839 843 5.784750 TCAAATCAGCACGACTAAATCTG 57.215 39.130 0.00 0.00 0.00 2.90
895 910 0.465705 ACAAGATGGCGTGGATCGAT 59.534 50.000 0.00 0.00 42.86 3.59
896 911 0.249120 AACAAGATGGCGTGGATCGA 59.751 50.000 0.00 0.00 42.86 3.59
897 912 1.086696 AAACAAGATGGCGTGGATCG 58.913 50.000 0.00 0.00 43.12 3.69
898 913 3.689649 AGTAAAACAAGATGGCGTGGATC 59.310 43.478 0.00 0.00 0.00 3.36
988 1003 0.255890 TCCCCCATTGCTGCTACTTC 59.744 55.000 0.00 0.00 0.00 3.01
992 1007 1.214305 AACCTCCCCCATTGCTGCTA 61.214 55.000 0.00 0.00 0.00 3.49
995 1010 1.683365 CCAACCTCCCCCATTGCTG 60.683 63.158 0.00 0.00 0.00 4.41
1141 1156 1.410648 CCTCCCGGCCTTGTACTACTA 60.411 57.143 0.00 0.00 0.00 1.82
1143 1158 1.683418 CCCTCCCGGCCTTGTACTAC 61.683 65.000 0.00 0.00 0.00 2.73
1146 1161 2.686106 TCCCTCCCGGCCTTGTAC 60.686 66.667 0.00 0.00 0.00 2.90
1148 1163 4.658786 AGTCCCTCCCGGCCTTGT 62.659 66.667 0.00 0.00 0.00 3.16
1397 1449 3.329542 GATGGTCCAGAAGCGGCCA 62.330 63.158 2.24 0.00 36.88 5.36
1750 1802 4.883354 GGATGCCGAAGCCCCAGG 62.883 72.222 0.00 0.00 38.69 4.45
1919 1977 3.571571 CTTGTCCATCGTCTCGTACAAA 58.428 45.455 0.00 0.00 0.00 2.83
1920 1978 2.094906 CCTTGTCCATCGTCTCGTACAA 60.095 50.000 0.00 0.00 0.00 2.41
1946 2004 4.193893 CGGCTCCCCATGATGCCA 62.194 66.667 14.93 0.00 45.13 4.92
2023 2081 2.361357 CGGTCTCCGTCCTGTCCT 60.361 66.667 0.00 0.00 42.73 3.85
2222 2283 2.561478 AGATAGAGAGAGAGGCGGAC 57.439 55.000 0.00 0.00 0.00 4.79
2696 2761 1.073964 GGCCGACGTTAAGGTTCTTC 58.926 55.000 1.77 0.00 0.00 2.87
2705 2770 2.672651 TCGAGGTGGCCGACGTTA 60.673 61.111 0.00 0.00 32.53 3.18
2789 2854 3.006110 CGGTCTTCTTGTAGGTGTACCAA 59.994 47.826 3.56 0.00 38.89 3.67
2848 2913 2.100631 CCGGCAGTCGAACCATCAC 61.101 63.158 0.00 0.00 42.43 3.06
2892 2963 3.553511 GCAGTCGAATCATCACCTACTTG 59.446 47.826 0.00 0.00 0.00 3.16
2893 2964 3.430929 GGCAGTCGAATCATCACCTACTT 60.431 47.826 0.00 0.00 0.00 2.24
2925 2996 2.390599 CGTTGGCGTCCTGGTCATG 61.391 63.158 0.00 0.00 0.00 3.07
2927 2998 2.709125 CTTCGTTGGCGTCCTGGTCA 62.709 60.000 0.00 0.00 39.49 4.02
2929 3000 1.466025 TACTTCGTTGGCGTCCTGGT 61.466 55.000 0.00 0.00 39.49 4.00
3054 3138 7.996098 TCACGATTTCCTTTTTCCTAATCTT 57.004 32.000 0.00 0.00 0.00 2.40
3103 3187 1.503800 TAGACCCGGATCCTTTTCCC 58.496 55.000 10.75 0.00 31.61 3.97
3163 3247 8.836413 GTCCATGAACCTCGATATAATTTTTGA 58.164 33.333 0.00 0.00 0.00 2.69
3173 3257 2.430694 CTGTGGTCCATGAACCTCGATA 59.569 50.000 1.64 0.00 40.20 2.92
3243 3327 1.888736 GACGAGGTAAGGCCGACTT 59.111 57.895 10.26 3.14 43.70 3.01
3258 3342 4.724303 AGACTTTCTAACTGTCATCGACG 58.276 43.478 0.00 0.00 34.95 5.12
3331 3415 2.134789 AACCTGATTGGCCAGATGAC 57.865 50.000 5.11 0.00 40.22 3.06
3332 3416 5.645056 TTATAACCTGATTGGCCAGATGA 57.355 39.130 5.11 0.00 40.22 2.92
3333 3417 6.064060 TCTTTATAACCTGATTGGCCAGATG 58.936 40.000 5.11 0.00 40.22 2.90
3334 3418 6.266131 TCTTTATAACCTGATTGGCCAGAT 57.734 37.500 5.11 2.42 40.22 2.90
3335 3419 5.708736 TCTTTATAACCTGATTGGCCAGA 57.291 39.130 5.11 0.00 40.22 3.86
3336 3420 5.888161 AGTTCTTTATAACCTGATTGGCCAG 59.112 40.000 5.11 0.00 40.22 4.85
3337 3421 5.826643 AGTTCTTTATAACCTGATTGGCCA 58.173 37.500 0.00 0.00 40.22 5.36
3338 3422 7.719633 TCATAGTTCTTTATAACCTGATTGGCC 59.280 37.037 0.00 0.00 40.22 5.36
3339 3423 8.560374 GTCATAGTTCTTTATAACCTGATTGGC 58.440 37.037 0.00 0.00 40.22 4.52
3340 3424 9.613428 TGTCATAGTTCTTTATAACCTGATTGG 57.387 33.333 0.00 0.00 42.93 3.16
3350 3434 8.817100 CGCTGAAACATGTCATAGTTCTTTATA 58.183 33.333 0.00 0.00 0.00 0.98
3351 3435 7.334421 ACGCTGAAACATGTCATAGTTCTTTAT 59.666 33.333 0.00 0.00 0.00 1.40
3352 3436 6.649141 ACGCTGAAACATGTCATAGTTCTTTA 59.351 34.615 0.00 0.00 0.00 1.85
3353 3437 5.470098 ACGCTGAAACATGTCATAGTTCTTT 59.530 36.000 0.00 0.00 0.00 2.52
3354 3438 4.997395 ACGCTGAAACATGTCATAGTTCTT 59.003 37.500 0.00 0.00 0.00 2.52
3355 3439 4.569943 ACGCTGAAACATGTCATAGTTCT 58.430 39.130 0.00 0.00 0.00 3.01
3596 3705 8.712285 ATGTCAATGAATGTTCATGATTTTCC 57.288 30.769 8.86 0.00 46.60 3.13
3620 3729 9.996554 CCAGGTCCTTTTTGAAAATAAAAGTAT 57.003 29.630 0.00 0.00 39.71 2.12
3678 3787 3.236047 TGGTGTAGTGCTCTTAAGGTGA 58.764 45.455 1.85 0.00 0.00 4.02
3961 4095 5.953183 TCTAGTAGACGCCGAAAATTACAA 58.047 37.500 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.