Multiple sequence alignment - TraesCS3B01G069100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G069100 chr3B 100.000 3845 0 0 1 3845 41016973 41013129 0.000000e+00 7101.0
1 TraesCS3B01G069100 chr3B 85.181 1795 235 22 1025 2801 42125254 42127035 0.000000e+00 1812.0
2 TraesCS3B01G069100 chr3B 85.577 1352 163 11 1461 2797 42047838 42046504 0.000000e+00 1387.0
3 TraesCS3B01G069100 chr3B 92.805 681 37 8 3139 3808 136791220 136791899 0.000000e+00 976.0
4 TraesCS3B01G069100 chr3B 91.250 240 21 0 1195 1434 41800336 41800575 1.030000e-85 327.0
5 TraesCS3B01G069100 chr3B 83.616 177 19 8 2895 3070 41139281 41139448 1.430000e-34 158.0
6 TraesCS3B01G069100 chr3B 83.908 174 18 8 2898 3070 42198705 42198541 1.430000e-34 158.0
7 TraesCS3B01G069100 chr3B 96.364 55 0 2 227 280 41018526 41018579 5.290000e-14 89.8
8 TraesCS3B01G069100 chr3B 96.154 52 2 0 230 281 505264622 505264571 6.840000e-13 86.1
9 TraesCS3B01G069100 chr3A 94.901 2216 74 19 881 3072 32426092 32428292 0.000000e+00 3430.0
10 TraesCS3B01G069100 chr3A 87.165 1605 188 11 1211 2801 32876478 32874878 0.000000e+00 1807.0
11 TraesCS3B01G069100 chr3A 97.619 42 1 0 176 217 32425899 32425940 5.330000e-09 73.1
12 TraesCS3B01G069100 chr3D 95.375 1946 58 15 921 2859 23231059 23229139 0.000000e+00 3066.0
13 TraesCS3B01G069100 chr3D 86.605 1620 195 16 1198 2801 23731038 23729425 0.000000e+00 1770.0
14 TraesCS3B01G069100 chr3D 92.794 680 39 9 3136 3808 497498241 497497565 0.000000e+00 976.0
15 TraesCS3B01G069100 chr3D 92.105 228 10 2 279 498 23232044 23231817 8.020000e-82 315.0
16 TraesCS3B01G069100 chr3D 91.477 176 7 2 2904 3072 23229054 23228880 6.420000e-58 235.0
17 TraesCS3B01G069100 chr3D 96.124 129 5 0 9 137 23232246 23232118 1.080000e-50 211.0
18 TraesCS3B01G069100 chr3D 85.366 82 10 2 201 280 20245591 20245672 2.460000e-12 84.2
19 TraesCS3B01G069100 chr3D 97.778 45 1 0 172 216 23232116 23232072 1.150000e-10 78.7
20 TraesCS3B01G069100 chr2A 84.011 1820 240 34 1001 2801 672946761 672944974 0.000000e+00 1701.0
21 TraesCS3B01G069100 chr2D 85.590 1603 214 11 1211 2801 528100019 528098422 0.000000e+00 1664.0
22 TraesCS3B01G069100 chr2D 96.429 56 0 2 227 281 625519603 625519657 1.470000e-14 91.6
23 TraesCS3B01G069100 chr2D 94.737 57 1 2 227 282 388818810 388818755 1.900000e-13 87.9
24 TraesCS3B01G069100 chr2B 83.714 1793 240 34 1025 2801 626092156 626090400 0.000000e+00 1646.0
25 TraesCS3B01G069100 chr2B 92.456 676 48 3 3136 3808 735955178 735955853 0.000000e+00 963.0
26 TraesCS3B01G069100 chr2B 96.226 53 1 1 229 280 683014726 683014778 6.840000e-13 86.1
27 TraesCS3B01G069100 chr1B 93.472 674 36 6 3139 3807 642181429 642180759 0.000000e+00 994.0
28 TraesCS3B01G069100 chr1B 96.078 51 2 0 230 280 583691458 583691408 2.460000e-12 84.2
29 TraesCS3B01G069100 chr4B 92.636 679 42 4 3137 3808 16814624 16815301 0.000000e+00 970.0
30 TraesCS3B01G069100 chr5D 92.730 674 37 11 3130 3795 327236323 327235654 0.000000e+00 963.0
31 TraesCS3B01G069100 chr6D 92.478 678 41 8 3139 3806 392270705 392270028 0.000000e+00 961.0
32 TraesCS3B01G069100 chr6D 91.884 690 45 8 3128 3808 283559302 283558615 0.000000e+00 953.0
33 TraesCS3B01G069100 chr5B 92.456 676 45 5 3139 3808 667520663 667519988 0.000000e+00 961.0
34 TraesCS3B01G069100 chrUn 85.207 338 34 6 2566 2900 38571878 38571554 2.210000e-87 333.0
35 TraesCS3B01G069100 chrUn 85.207 338 34 6 2566 2900 283369041 283369365 2.210000e-87 333.0
36 TraesCS3B01G069100 chrUn 85.207 338 34 6 2566 2900 359469461 359469785 2.210000e-87 333.0
37 TraesCS3B01G069100 chrUn 85.207 338 34 6 2566 2900 376732319 376732643 2.210000e-87 333.0
38 TraesCS3B01G069100 chrUn 91.561 237 20 0 1198 1434 373565497 373565261 1.030000e-85 327.0
39 TraesCS3B01G069100 chrUn 83.908 174 18 8 2898 3070 38571520 38571356 1.430000e-34 158.0
40 TraesCS3B01G069100 chrUn 83.616 177 19 8 2895 3070 283369396 283369563 1.430000e-34 158.0
41 TraesCS3B01G069100 chrUn 83.616 177 19 8 2895 3070 359469816 359469983 1.430000e-34 158.0
42 TraesCS3B01G069100 chrUn 83.616 177 19 8 2895 3070 376732674 376732841 1.430000e-34 158.0
43 TraesCS3B01G069100 chr6A 96.154 52 2 0 230 281 222554955 222555006 6.840000e-13 86.1
44 TraesCS3B01G069100 chr6A 94.643 56 1 2 227 281 446725157 446725103 6.840000e-13 86.1
45 TraesCS3B01G069100 chr7B 94.872 39 2 0 3807 3845 63565875 63565913 1.150000e-05 62.1
46 TraesCS3B01G069100 chr7D 100.000 29 0 0 148 176 529301927 529301955 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G069100 chr3B 41013129 41016973 3844 True 7101.00 7101 100.0000 1 3845 1 chr3B.!!$R1 3844
1 TraesCS3B01G069100 chr3B 42125254 42127035 1781 False 1812.00 1812 85.1810 1025 2801 1 chr3B.!!$F4 1776
2 TraesCS3B01G069100 chr3B 42046504 42047838 1334 True 1387.00 1387 85.5770 1461 2797 1 chr3B.!!$R2 1336
3 TraesCS3B01G069100 chr3B 136791220 136791899 679 False 976.00 976 92.8050 3139 3808 1 chr3B.!!$F5 669
4 TraesCS3B01G069100 chr3A 32874878 32876478 1600 True 1807.00 1807 87.1650 1211 2801 1 chr3A.!!$R1 1590
5 TraesCS3B01G069100 chr3A 32425899 32428292 2393 False 1751.55 3430 96.2600 176 3072 2 chr3A.!!$F1 2896
6 TraesCS3B01G069100 chr3D 23729425 23731038 1613 True 1770.00 1770 86.6050 1198 2801 1 chr3D.!!$R1 1603
7 TraesCS3B01G069100 chr3D 497497565 497498241 676 True 976.00 976 92.7940 3136 3808 1 chr3D.!!$R2 672
8 TraesCS3B01G069100 chr3D 23228880 23232246 3366 True 781.14 3066 94.5718 9 3072 5 chr3D.!!$R3 3063
9 TraesCS3B01G069100 chr2A 672944974 672946761 1787 True 1701.00 1701 84.0110 1001 2801 1 chr2A.!!$R1 1800
10 TraesCS3B01G069100 chr2D 528098422 528100019 1597 True 1664.00 1664 85.5900 1211 2801 1 chr2D.!!$R2 1590
11 TraesCS3B01G069100 chr2B 626090400 626092156 1756 True 1646.00 1646 83.7140 1025 2801 1 chr2B.!!$R1 1776
12 TraesCS3B01G069100 chr2B 735955178 735955853 675 False 963.00 963 92.4560 3136 3808 1 chr2B.!!$F2 672
13 TraesCS3B01G069100 chr1B 642180759 642181429 670 True 994.00 994 93.4720 3139 3807 1 chr1B.!!$R2 668
14 TraesCS3B01G069100 chr4B 16814624 16815301 677 False 970.00 970 92.6360 3137 3808 1 chr4B.!!$F1 671
15 TraesCS3B01G069100 chr5D 327235654 327236323 669 True 963.00 963 92.7300 3130 3795 1 chr5D.!!$R1 665
16 TraesCS3B01G069100 chr6D 392270028 392270705 677 True 961.00 961 92.4780 3139 3806 1 chr6D.!!$R2 667
17 TraesCS3B01G069100 chr6D 283558615 283559302 687 True 953.00 953 91.8840 3128 3808 1 chr6D.!!$R1 680
18 TraesCS3B01G069100 chr5B 667519988 667520663 675 True 961.00 961 92.4560 3139 3808 1 chr5B.!!$R1 669
19 TraesCS3B01G069100 chrUn 38571356 38571878 522 True 245.50 333 84.5575 2566 3070 2 chrUn.!!$R2 504
20 TraesCS3B01G069100 chrUn 283369041 283369563 522 False 245.50 333 84.4115 2566 3070 2 chrUn.!!$F1 504
21 TraesCS3B01G069100 chrUn 359469461 359469983 522 False 245.50 333 84.4115 2566 3070 2 chrUn.!!$F2 504
22 TraesCS3B01G069100 chrUn 376732319 376732841 522 False 245.50 333 84.4115 2566 3070 2 chrUn.!!$F3 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 287 0.037303 AACGGAGGGAGTAGTCGTGA 59.963 55.0 0.0 0.0 34.18 4.35 F
488 497 0.042731 TCCAACGAGAATCCCTCCCT 59.957 55.0 0.0 0.0 38.71 4.20 F
570 579 0.186630 CATGCCCTGGATTGGATGGA 59.813 55.0 0.0 0.0 0.00 3.41 F
991 1404 0.320247 CGAGAGACAAGCAGCAAGGT 60.320 55.0 0.0 0.0 0.00 3.50 F
2622 3076 0.458716 GGAACTACCTCAGCACGCTC 60.459 60.0 0.0 0.0 35.41 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1243 1684 0.958382 GGTTGGTGCTCATGCCGTAA 60.958 55.000 0.00 0.0 38.71 3.18 R
1708 2149 1.284715 CGTCTGCACGTACACCAGA 59.715 57.895 0.00 0.0 41.42 3.86 R
2052 2506 2.203640 TCCTCCACCTGCGTCACT 60.204 61.111 0.00 0.0 0.00 3.41 R
2730 3187 0.108424 CGAAGTTGAGGAGGCTGAGG 60.108 60.000 0.00 0.0 0.00 3.86 R
3576 4113 0.608582 ACGGCTGAACTAGGTCGTCT 60.609 55.000 2.72 0.0 39.66 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.392998 AATCGGATCAGTGTGGCCAC 60.393 55.000 29.67 29.67 42.17 5.01
90 91 3.575247 ACATGTTGGCCGTCCCCA 61.575 61.111 0.00 0.00 0.00 4.96
130 131 0.527113 CATGAGCCGCCATTGTTTCA 59.473 50.000 0.00 0.00 0.00 2.69
137 138 0.801872 CGCCATTGTTTCATGACGGA 59.198 50.000 0.00 0.00 0.00 4.69
138 139 1.202065 CGCCATTGTTTCATGACGGAG 60.202 52.381 0.00 0.00 0.00 4.63
139 140 2.083774 GCCATTGTTTCATGACGGAGA 58.916 47.619 0.00 0.00 0.00 3.71
140 141 2.487762 GCCATTGTTTCATGACGGAGAA 59.512 45.455 0.00 0.00 0.00 2.87
141 142 3.426695 GCCATTGTTTCATGACGGAGAAG 60.427 47.826 0.00 0.00 0.00 2.85
142 143 4.002982 CCATTGTTTCATGACGGAGAAGA 58.997 43.478 0.00 0.00 0.00 2.87
143 144 4.455533 CCATTGTTTCATGACGGAGAAGAA 59.544 41.667 0.00 0.00 0.00 2.52
144 145 5.391310 CCATTGTTTCATGACGGAGAAGAAG 60.391 44.000 0.00 0.00 0.00 2.85
145 146 4.600692 TGTTTCATGACGGAGAAGAAGA 57.399 40.909 0.00 0.00 0.00 2.87
146 147 5.152623 TGTTTCATGACGGAGAAGAAGAT 57.847 39.130 0.00 0.00 0.00 2.40
147 148 5.171476 TGTTTCATGACGGAGAAGAAGATC 58.829 41.667 0.00 0.00 0.00 2.75
148 149 4.392921 TTCATGACGGAGAAGAAGATCC 57.607 45.455 0.00 0.00 0.00 3.36
149 150 3.636679 TCATGACGGAGAAGAAGATCCT 58.363 45.455 0.00 0.00 33.12 3.24
150 151 4.026744 TCATGACGGAGAAGAAGATCCTT 58.973 43.478 0.00 0.00 33.12 3.36
151 152 4.098654 TCATGACGGAGAAGAAGATCCTTC 59.901 45.833 0.00 4.11 42.07 3.46
152 153 2.761208 TGACGGAGAAGAAGATCCTTCC 59.239 50.000 7.79 1.72 42.58 3.46
153 154 2.101750 GACGGAGAAGAAGATCCTTCCC 59.898 54.545 7.79 7.99 42.58 3.97
154 155 1.414550 CGGAGAAGAAGATCCTTCCCC 59.585 57.143 7.79 5.46 42.58 4.81
155 156 2.770447 GGAGAAGAAGATCCTTCCCCT 58.230 52.381 7.79 1.65 42.58 4.79
156 157 3.119319 GGAGAAGAAGATCCTTCCCCTT 58.881 50.000 7.79 0.00 42.58 3.95
157 158 3.135712 GGAGAAGAAGATCCTTCCCCTTC 59.864 52.174 7.79 0.00 42.58 3.46
158 159 3.119319 AGAAGAAGATCCTTCCCCTTCC 58.881 50.000 7.79 0.00 42.58 3.46
159 160 2.980699 AGAAGATCCTTCCCCTTCCT 57.019 50.000 3.33 0.00 37.58 3.36
160 161 2.770447 AGAAGATCCTTCCCCTTCCTC 58.230 52.381 3.33 0.00 37.58 3.71
161 162 2.320675 AGAAGATCCTTCCCCTTCCTCT 59.679 50.000 3.33 0.00 37.58 3.69
162 163 2.980699 AGATCCTTCCCCTTCCTCTT 57.019 50.000 0.00 0.00 0.00 2.85
163 164 2.770447 AGATCCTTCCCCTTCCTCTTC 58.230 52.381 0.00 0.00 0.00 2.87
164 165 1.771854 GATCCTTCCCCTTCCTCTTCC 59.228 57.143 0.00 0.00 0.00 3.46
165 166 0.253207 TCCTTCCCCTTCCTCTTCCC 60.253 60.000 0.00 0.00 0.00 3.97
166 167 1.282653 CCTTCCCCTTCCTCTTCCCC 61.283 65.000 0.00 0.00 0.00 4.81
167 168 1.615424 TTCCCCTTCCTCTTCCCCG 60.615 63.158 0.00 0.00 0.00 5.73
168 169 2.285442 CCCCTTCCTCTTCCCCGT 60.285 66.667 0.00 0.00 0.00 5.28
169 170 2.368011 CCCCTTCCTCTTCCCCGTC 61.368 68.421 0.00 0.00 0.00 4.79
170 171 2.368011 CCCTTCCTCTTCCCCGTCC 61.368 68.421 0.00 0.00 0.00 4.79
171 172 2.368011 CCTTCCTCTTCCCCGTCCC 61.368 68.421 0.00 0.00 0.00 4.46
172 173 2.285144 TTCCTCTTCCCCGTCCCC 60.285 66.667 0.00 0.00 0.00 4.81
173 174 2.824388 CTTCCTCTTCCCCGTCCCCT 62.824 65.000 0.00 0.00 0.00 4.79
174 175 2.764547 CCTCTTCCCCGTCCCCTC 60.765 72.222 0.00 0.00 0.00 4.30
216 217 4.038402 ACCCGTCGTCTTTCTTTCTTTCTA 59.962 41.667 0.00 0.00 0.00 2.10
217 218 4.385146 CCCGTCGTCTTTCTTTCTTTCTAC 59.615 45.833 0.00 0.00 0.00 2.59
218 219 5.221130 CCGTCGTCTTTCTTTCTTTCTACT 58.779 41.667 0.00 0.00 0.00 2.57
219 220 5.342791 CCGTCGTCTTTCTTTCTTTCTACTC 59.657 44.000 0.00 0.00 0.00 2.59
220 221 5.342791 CGTCGTCTTTCTTTCTTTCTACTCC 59.657 44.000 0.00 0.00 0.00 3.85
222 223 6.924612 GTCGTCTTTCTTTCTTTCTACTCCTT 59.075 38.462 0.00 0.00 0.00 3.36
223 224 7.115236 GTCGTCTTTCTTTCTTTCTACTCCTTC 59.885 40.741 0.00 0.00 0.00 3.46
224 225 6.366604 CGTCTTTCTTTCTTTCTACTCCTTCC 59.633 42.308 0.00 0.00 0.00 3.46
225 226 6.366604 GTCTTTCTTTCTTTCTACTCCTTCCG 59.633 42.308 0.00 0.00 0.00 4.30
226 227 5.803237 TTCTTTCTTTCTACTCCTTCCGT 57.197 39.130 0.00 0.00 0.00 4.69
228 229 5.780984 TCTTTCTTTCTACTCCTTCCGTTC 58.219 41.667 0.00 0.00 0.00 3.95
229 230 5.303589 TCTTTCTTTCTACTCCTTCCGTTCA 59.696 40.000 0.00 0.00 0.00 3.18
231 232 3.057736 TCTTTCTACTCCTTCCGTTCACG 60.058 47.826 0.00 0.00 39.44 4.35
233 234 1.808945 TCTACTCCTTCCGTTCACGTC 59.191 52.381 0.00 0.00 37.74 4.34
234 235 1.811359 CTACTCCTTCCGTTCACGTCT 59.189 52.381 0.00 0.00 37.74 4.18
235 236 1.901591 ACTCCTTCCGTTCACGTCTA 58.098 50.000 0.00 0.00 37.74 2.59
236 237 1.811359 ACTCCTTCCGTTCACGTCTAG 59.189 52.381 0.00 0.00 37.74 2.43
237 238 2.082231 CTCCTTCCGTTCACGTCTAGA 58.918 52.381 0.00 0.00 37.74 2.43
238 239 2.683867 CTCCTTCCGTTCACGTCTAGAT 59.316 50.000 0.00 0.00 37.74 1.98
239 240 3.875727 CTCCTTCCGTTCACGTCTAGATA 59.124 47.826 0.00 0.00 37.74 1.98
240 241 3.624861 TCCTTCCGTTCACGTCTAGATAC 59.375 47.826 0.00 0.00 37.74 2.24
241 242 3.376234 CCTTCCGTTCACGTCTAGATACA 59.624 47.826 0.00 0.00 37.74 2.29
242 243 4.036498 CCTTCCGTTCACGTCTAGATACAT 59.964 45.833 0.00 0.00 37.74 2.29
243 244 4.808077 TCCGTTCACGTCTAGATACATC 57.192 45.455 0.00 0.00 37.74 3.06
244 245 4.449131 TCCGTTCACGTCTAGATACATCT 58.551 43.478 0.00 0.00 38.07 2.90
245 246 4.272748 TCCGTTCACGTCTAGATACATCTG 59.727 45.833 0.00 0.00 36.65 2.90
246 247 4.035324 CCGTTCACGTCTAGATACATCTGT 59.965 45.833 0.00 0.00 36.65 3.41
247 248 5.448768 CCGTTCACGTCTAGATACATCTGTT 60.449 44.000 0.00 0.00 36.65 3.16
248 249 6.028368 CGTTCACGTCTAGATACATCTGTTT 58.972 40.000 0.00 0.00 35.05 2.83
249 250 6.021390 CGTTCACGTCTAGATACATCTGTTTG 60.021 42.308 0.00 0.00 35.05 2.93
250 251 6.753107 TCACGTCTAGATACATCTGTTTGA 57.247 37.500 0.00 0.00 37.76 2.69
251 252 6.786207 TCACGTCTAGATACATCTGTTTGAG 58.214 40.000 0.00 0.00 37.76 3.02
252 253 5.457148 CACGTCTAGATACATCTGTTTGAGC 59.543 44.000 0.00 0.00 37.76 4.26
253 254 4.672862 CGTCTAGATACATCTGTTTGAGCG 59.327 45.833 0.00 0.00 37.76 5.03
254 255 5.504173 CGTCTAGATACATCTGTTTGAGCGA 60.504 44.000 0.00 0.00 37.76 4.93
255 256 5.683743 GTCTAGATACATCTGTTTGAGCGAC 59.316 44.000 0.00 0.00 37.76 5.19
256 257 4.456280 AGATACATCTGTTTGAGCGACA 57.544 40.909 0.00 0.00 35.42 4.35
257 258 4.820897 AGATACATCTGTTTGAGCGACAA 58.179 39.130 0.00 0.00 35.42 3.18
258 259 4.627467 AGATACATCTGTTTGAGCGACAAC 59.373 41.667 0.00 0.00 35.47 3.32
259 260 2.838736 ACATCTGTTTGAGCGACAACT 58.161 42.857 0.00 0.00 38.29 3.16
260 261 3.990092 ACATCTGTTTGAGCGACAACTA 58.010 40.909 0.00 0.00 38.29 2.24
261 262 4.377021 ACATCTGTTTGAGCGACAACTAA 58.623 39.130 0.00 0.00 38.29 2.24
262 263 4.997395 ACATCTGTTTGAGCGACAACTAAT 59.003 37.500 0.00 0.00 38.29 1.73
263 264 6.163476 ACATCTGTTTGAGCGACAACTAATA 58.837 36.000 0.00 0.00 38.29 0.98
264 265 6.818644 ACATCTGTTTGAGCGACAACTAATAT 59.181 34.615 0.00 0.00 38.29 1.28
265 266 6.647212 TCTGTTTGAGCGACAACTAATATG 57.353 37.500 0.00 0.00 38.29 1.78
266 267 5.580691 TCTGTTTGAGCGACAACTAATATGG 59.419 40.000 0.00 0.00 38.29 2.74
267 268 5.483811 TGTTTGAGCGACAACTAATATGGA 58.516 37.500 0.00 0.00 38.29 3.41
268 269 5.935206 TGTTTGAGCGACAACTAATATGGAA 59.065 36.000 0.00 0.00 38.29 3.53
269 270 6.128391 TGTTTGAGCGACAACTAATATGGAAC 60.128 38.462 0.00 0.00 38.29 3.62
270 271 4.109766 TGAGCGACAACTAATATGGAACG 58.890 43.478 0.00 0.00 0.00 3.95
271 272 3.454375 AGCGACAACTAATATGGAACGG 58.546 45.455 0.00 0.00 0.00 4.44
272 273 3.131577 AGCGACAACTAATATGGAACGGA 59.868 43.478 0.00 0.00 0.00 4.69
273 274 3.489785 GCGACAACTAATATGGAACGGAG 59.510 47.826 0.00 0.00 0.00 4.63
274 275 4.049186 CGACAACTAATATGGAACGGAGG 58.951 47.826 0.00 0.00 0.00 4.30
275 276 4.377897 GACAACTAATATGGAACGGAGGG 58.622 47.826 0.00 0.00 0.00 4.30
276 277 4.035112 ACAACTAATATGGAACGGAGGGA 58.965 43.478 0.00 0.00 0.00 4.20
277 278 4.101119 ACAACTAATATGGAACGGAGGGAG 59.899 45.833 0.00 0.00 0.00 4.30
286 287 0.037303 AACGGAGGGAGTAGTCGTGA 59.963 55.000 0.00 0.00 34.18 4.35
390 391 1.163554 CTCACTTCTCCTTTGCCTGC 58.836 55.000 0.00 0.00 0.00 4.85
391 392 0.767375 TCACTTCTCCTTTGCCTGCT 59.233 50.000 0.00 0.00 0.00 4.24
396 397 0.679002 TCTCCTTTGCCTGCTCATGC 60.679 55.000 0.00 0.00 40.20 4.06
403 404 0.179054 TGCCTGCTCATGCTCATCTC 60.179 55.000 0.00 0.00 40.48 2.75
414 415 3.815569 CTCATCTCGCCCGACTCGC 62.816 68.421 0.00 0.00 0.00 5.03
462 463 3.117491 CCTGAGCAGGTATGGTATGTG 57.883 52.381 8.38 0.00 43.61 3.21
463 464 2.435805 CCTGAGCAGGTATGGTATGTGT 59.564 50.000 8.38 0.00 43.61 3.72
464 465 3.461061 CTGAGCAGGTATGGTATGTGTG 58.539 50.000 0.00 0.00 37.25 3.82
488 497 0.042731 TCCAACGAGAATCCCTCCCT 59.957 55.000 0.00 0.00 38.71 4.20
498 507 1.900254 ATCCCTCCCTCTTTCTTCCC 58.100 55.000 0.00 0.00 0.00 3.97
499 508 0.617820 TCCCTCCCTCTTTCTTCCCG 60.618 60.000 0.00 0.00 0.00 5.14
500 509 0.617820 CCCTCCCTCTTTCTTCCCGA 60.618 60.000 0.00 0.00 0.00 5.14
501 510 1.501582 CCTCCCTCTTTCTTCCCGAT 58.498 55.000 0.00 0.00 0.00 4.18
502 511 1.414550 CCTCCCTCTTTCTTCCCGATC 59.585 57.143 0.00 0.00 0.00 3.69
503 512 1.414550 CTCCCTCTTTCTTCCCGATCC 59.585 57.143 0.00 0.00 0.00 3.36
504 513 1.008449 TCCCTCTTTCTTCCCGATCCT 59.992 52.381 0.00 0.00 0.00 3.24
505 514 1.840635 CCCTCTTTCTTCCCGATCCTT 59.159 52.381 0.00 0.00 0.00 3.36
506 515 2.158885 CCCTCTTTCTTCCCGATCCTTC 60.159 54.545 0.00 0.00 0.00 3.46
507 516 2.158885 CCTCTTTCTTCCCGATCCTTCC 60.159 54.545 0.00 0.00 0.00 3.46
508 517 2.769095 CTCTTTCTTCCCGATCCTTCCT 59.231 50.000 0.00 0.00 0.00 3.36
509 518 3.182152 TCTTTCTTCCCGATCCTTCCTT 58.818 45.455 0.00 0.00 0.00 3.36
510 519 3.197983 TCTTTCTTCCCGATCCTTCCTTC 59.802 47.826 0.00 0.00 0.00 3.46
511 520 1.497161 TCTTCCCGATCCTTCCTTCC 58.503 55.000 0.00 0.00 0.00 3.46
512 521 1.204146 CTTCCCGATCCTTCCTTCCA 58.796 55.000 0.00 0.00 0.00 3.53
513 522 0.909623 TTCCCGATCCTTCCTTCCAC 59.090 55.000 0.00 0.00 0.00 4.02
514 523 1.144057 CCCGATCCTTCCTTCCACG 59.856 63.158 0.00 0.00 0.00 4.94
515 524 1.521681 CCGATCCTTCCTTCCACGC 60.522 63.158 0.00 0.00 0.00 5.34
516 525 1.521681 CGATCCTTCCTTCCACGCC 60.522 63.158 0.00 0.00 0.00 5.68
517 526 1.153147 GATCCTTCCTTCCACGCCC 60.153 63.158 0.00 0.00 0.00 6.13
542 551 4.955450 TCCATGAATCCCGTGATTTGATTT 59.045 37.500 0.00 0.00 41.30 2.17
543 552 5.045215 CCATGAATCCCGTGATTTGATTTG 58.955 41.667 0.00 0.00 41.30 2.32
544 553 5.163530 CCATGAATCCCGTGATTTGATTTGA 60.164 40.000 0.00 0.00 41.30 2.69
545 554 6.461927 CCATGAATCCCGTGATTTGATTTGAT 60.462 38.462 0.00 0.00 41.30 2.57
546 555 6.528537 TGAATCCCGTGATTTGATTTGATT 57.471 33.333 0.00 0.00 41.30 2.57
552 561 5.105797 CCCGTGATTTGATTTGATTCTTCCA 60.106 40.000 0.00 0.00 0.00 3.53
559 568 3.702548 TGATTTGATTCTTCCATGCCCTG 59.297 43.478 0.00 0.00 0.00 4.45
569 578 2.741433 CATGCCCTGGATTGGATGG 58.259 57.895 0.00 0.00 0.00 3.51
570 579 0.186630 CATGCCCTGGATTGGATGGA 59.813 55.000 0.00 0.00 0.00 3.41
571 580 1.164313 ATGCCCTGGATTGGATGGAT 58.836 50.000 0.00 0.00 0.00 3.41
572 581 0.186630 TGCCCTGGATTGGATGGATG 59.813 55.000 0.00 0.00 0.00 3.51
573 582 0.479815 GCCCTGGATTGGATGGATGA 59.520 55.000 0.00 0.00 0.00 2.92
574 583 1.133388 GCCCTGGATTGGATGGATGAA 60.133 52.381 0.00 0.00 0.00 2.57
575 584 2.590821 CCCTGGATTGGATGGATGAAC 58.409 52.381 0.00 0.00 0.00 3.18
576 585 2.224606 CCTGGATTGGATGGATGAACG 58.775 52.381 0.00 0.00 0.00 3.95
577 586 2.158769 CCTGGATTGGATGGATGAACGA 60.159 50.000 0.00 0.00 0.00 3.85
578 587 3.544684 CTGGATTGGATGGATGAACGAA 58.455 45.455 0.00 0.00 0.00 3.85
579 588 4.139786 CTGGATTGGATGGATGAACGAAT 58.860 43.478 0.00 0.00 0.00 3.34
580 589 4.136796 TGGATTGGATGGATGAACGAATC 58.863 43.478 0.00 0.00 0.00 2.52
581 590 4.141413 TGGATTGGATGGATGAACGAATCT 60.141 41.667 0.00 0.00 32.35 2.40
582 591 4.214971 GGATTGGATGGATGAACGAATCTG 59.785 45.833 0.00 0.00 32.35 2.90
583 592 3.912496 TGGATGGATGAACGAATCTGT 57.088 42.857 0.00 0.00 0.00 3.41
584 593 3.534554 TGGATGGATGAACGAATCTGTG 58.465 45.455 0.00 0.00 0.00 3.66
585 594 2.289002 GGATGGATGAACGAATCTGTGC 59.711 50.000 0.00 0.00 0.00 4.57
597 606 1.747709 ATCTGTGCTGAATCTGGTGC 58.252 50.000 0.00 0.00 0.00 5.01
612 621 2.033141 TGCCTGCCTGCTTCACTC 59.967 61.111 0.00 0.00 0.00 3.51
621 630 0.896923 CTGCTTCACTCTGAGAGGCT 59.103 55.000 14.83 0.00 33.35 4.58
622 631 0.894141 TGCTTCACTCTGAGAGGCTC 59.106 55.000 14.83 6.34 33.35 4.70
623 632 0.894141 GCTTCACTCTGAGAGGCTCA 59.106 55.000 18.26 0.00 38.25 4.26
624 633 1.481772 GCTTCACTCTGAGAGGCTCAT 59.518 52.381 18.26 1.35 39.92 2.90
625 634 2.739287 GCTTCACTCTGAGAGGCTCATG 60.739 54.545 18.26 2.53 39.92 3.07
626 635 2.521547 TCACTCTGAGAGGCTCATGA 57.478 50.000 18.26 10.23 39.92 3.07
627 636 2.377073 TCACTCTGAGAGGCTCATGAG 58.623 52.381 18.84 18.84 39.92 2.90
628 637 2.025510 TCACTCTGAGAGGCTCATGAGA 60.026 50.000 27.04 18.49 39.92 3.27
636 645 2.228545 AGGCTCATGAGACTCACTGA 57.771 50.000 26.16 11.44 45.57 3.41
637 646 1.824230 AGGCTCATGAGACTCACTGAC 59.176 52.381 26.16 3.96 45.57 3.51
638 647 1.134848 GGCTCATGAGACTCACTGACC 60.135 57.143 27.04 10.44 32.39 4.02
639 648 1.547820 GCTCATGAGACTCACTGACCA 59.452 52.381 27.04 0.00 0.00 4.02
640 649 2.673610 GCTCATGAGACTCACTGACCAC 60.674 54.545 27.04 0.00 0.00 4.16
641 650 2.560105 CTCATGAGACTCACTGACCACA 59.440 50.000 18.34 0.00 0.00 4.17
642 651 2.297315 TCATGAGACTCACTGACCACAC 59.703 50.000 7.47 0.00 0.00 3.82
643 652 1.775385 TGAGACTCACTGACCACACA 58.225 50.000 0.00 0.00 0.00 3.72
644 653 1.683385 TGAGACTCACTGACCACACAG 59.317 52.381 0.00 0.00 42.78 3.66
652 691 1.889829 ACTGACCACACAGTCTCTAGC 59.110 52.381 0.00 0.00 46.36 3.42
670 709 0.393808 GCTCTGCAAATCCCCCGTTA 60.394 55.000 0.00 0.00 0.00 3.18
674 713 2.017049 CTGCAAATCCCCCGTTAGAAG 58.983 52.381 0.00 0.00 0.00 2.85
675 714 1.353022 TGCAAATCCCCCGTTAGAAGT 59.647 47.619 0.00 0.00 0.00 3.01
676 715 2.224917 TGCAAATCCCCCGTTAGAAGTT 60.225 45.455 0.00 0.00 0.00 2.66
677 716 2.823747 GCAAATCCCCCGTTAGAAGTTT 59.176 45.455 0.00 0.00 0.00 2.66
678 717 3.119602 GCAAATCCCCCGTTAGAAGTTTC 60.120 47.826 0.00 0.00 0.00 2.78
681 720 3.860968 TCCCCCGTTAGAAGTTTCAAA 57.139 42.857 0.00 0.00 0.00 2.69
682 721 4.376225 TCCCCCGTTAGAAGTTTCAAAT 57.624 40.909 0.00 0.00 0.00 2.32
683 722 4.329392 TCCCCCGTTAGAAGTTTCAAATC 58.671 43.478 0.00 0.00 0.00 2.17
684 723 4.076394 CCCCCGTTAGAAGTTTCAAATCA 58.924 43.478 0.00 0.00 0.00 2.57
685 724 4.156008 CCCCCGTTAGAAGTTTCAAATCAG 59.844 45.833 0.00 0.00 0.00 2.90
686 725 4.379499 CCCCGTTAGAAGTTTCAAATCAGC 60.379 45.833 0.00 0.00 0.00 4.26
687 726 4.215399 CCCGTTAGAAGTTTCAAATCAGCA 59.785 41.667 0.00 0.00 0.00 4.41
688 727 5.106157 CCCGTTAGAAGTTTCAAATCAGCAT 60.106 40.000 0.00 0.00 0.00 3.79
692 731 8.390354 CGTTAGAAGTTTCAAATCAGCATATCA 58.610 33.333 0.00 0.00 0.00 2.15
696 735 9.453572 AGAAGTTTCAAATCAGCATATCAGTTA 57.546 29.630 0.00 0.00 0.00 2.24
710 749 1.746615 AGTTATGCACTGGCCGCAG 60.747 57.895 9.71 0.00 43.88 5.18
757 796 2.029649 TGTCGCGCCTTACTAGTTTCTT 60.030 45.455 0.00 0.00 0.00 2.52
758 797 2.991866 GTCGCGCCTTACTAGTTTCTTT 59.008 45.455 0.00 0.00 0.00 2.52
759 798 3.060496 GTCGCGCCTTACTAGTTTCTTTC 59.940 47.826 0.00 0.00 0.00 2.62
760 799 3.057033 TCGCGCCTTACTAGTTTCTTTCT 60.057 43.478 0.00 0.00 0.00 2.52
761 800 3.060895 CGCGCCTTACTAGTTTCTTTCTG 59.939 47.826 0.00 0.00 0.00 3.02
762 801 3.181519 GCGCCTTACTAGTTTCTTTCTGC 60.182 47.826 0.00 0.00 0.00 4.26
763 802 4.246458 CGCCTTACTAGTTTCTTTCTGCT 58.754 43.478 0.00 0.00 0.00 4.24
764 803 4.327627 CGCCTTACTAGTTTCTTTCTGCTC 59.672 45.833 0.00 0.00 0.00 4.26
765 804 4.632251 GCCTTACTAGTTTCTTTCTGCTCC 59.368 45.833 0.00 0.00 0.00 4.70
766 805 5.179533 CCTTACTAGTTTCTTTCTGCTCCC 58.820 45.833 0.00 0.00 0.00 4.30
767 806 5.280011 CCTTACTAGTTTCTTTCTGCTCCCA 60.280 44.000 0.00 0.00 0.00 4.37
768 807 4.917906 ACTAGTTTCTTTCTGCTCCCAT 57.082 40.909 0.00 0.00 0.00 4.00
769 808 4.583871 ACTAGTTTCTTTCTGCTCCCATG 58.416 43.478 0.00 0.00 0.00 3.66
770 809 3.795688 AGTTTCTTTCTGCTCCCATGA 57.204 42.857 0.00 0.00 0.00 3.07
771 810 4.313020 AGTTTCTTTCTGCTCCCATGAT 57.687 40.909 0.00 0.00 0.00 2.45
772 811 5.441718 AGTTTCTTTCTGCTCCCATGATA 57.558 39.130 0.00 0.00 0.00 2.15
773 812 5.435291 AGTTTCTTTCTGCTCCCATGATAG 58.565 41.667 0.00 0.00 0.00 2.08
783 822 3.243704 GCTCCCATGATAGTCTGTCTGTC 60.244 52.174 0.00 0.00 35.32 3.51
811 850 5.576384 TCTTGATTTGCAATTAACGCCATTC 59.424 36.000 0.00 0.00 35.59 2.67
813 852 2.663826 TTGCAATTAACGCCATTCCC 57.336 45.000 0.00 0.00 0.00 3.97
814 853 1.550327 TGCAATTAACGCCATTCCCA 58.450 45.000 0.00 0.00 0.00 4.37
817 892 3.055530 TGCAATTAACGCCATTCCCATTT 60.056 39.130 0.00 0.00 0.00 2.32
818 893 3.555547 GCAATTAACGCCATTCCCATTTC 59.444 43.478 0.00 0.00 0.00 2.17
820 895 5.418676 CAATTAACGCCATTCCCATTTCTT 58.581 37.500 0.00 0.00 0.00 2.52
822 897 1.474330 ACGCCATTCCCATTTCTTCC 58.526 50.000 0.00 0.00 0.00 3.46
824 899 1.406539 CGCCATTCCCATTTCTTCCAG 59.593 52.381 0.00 0.00 0.00 3.86
826 901 2.889756 GCCATTCCCATTTCTTCCAGGT 60.890 50.000 0.00 0.00 0.00 4.00
829 904 4.286808 CCATTCCCATTTCTTCCAGGTTTT 59.713 41.667 0.00 0.00 0.00 2.43
837 912 7.817478 CCCATTTCTTCCAGGTTTTATTACAAC 59.183 37.037 0.00 0.00 0.00 3.32
848 923 7.387119 GGTTTTATTACAACCTTCACCCTAG 57.613 40.000 4.77 0.00 40.66 3.02
853 928 3.703001 ACAACCTTCACCCTAGTCATG 57.297 47.619 0.00 0.00 0.00 3.07
855 930 3.394606 ACAACCTTCACCCTAGTCATGTT 59.605 43.478 0.00 0.00 0.00 2.71
872 947 4.886489 TCATGTTCAACAACAATCTGTCCA 59.114 37.500 0.00 0.00 45.78 4.02
874 949 4.013050 TGTTCAACAACAATCTGTCCACA 58.987 39.130 0.00 0.00 39.69 4.17
884 959 4.082408 ACAATCTGTCCACAATTGCATCTG 60.082 41.667 5.05 0.00 34.47 2.90
907 982 1.390123 CCGCACTGTTAATCACTGTCG 59.610 52.381 0.00 0.00 35.46 4.35
912 987 5.498700 CGCACTGTTAATCACTGTCGATAAC 60.499 44.000 0.00 0.00 35.46 1.89
915 990 7.570507 GCACTGTTAATCACTGTCGATAACAAA 60.571 37.037 6.89 0.00 37.45 2.83
917 992 8.832521 ACTGTTAATCACTGTCGATAACAAAAA 58.167 29.630 6.89 0.00 37.45 1.94
918 993 8.996988 TGTTAATCACTGTCGATAACAAAAAC 57.003 30.769 3.65 0.00 37.45 2.43
931 1335 2.110578 ACAAAAACCTTGCAGGAAGCT 58.889 42.857 8.91 0.00 45.94 3.74
991 1404 0.320247 CGAGAGACAAGCAGCAAGGT 60.320 55.000 0.00 0.00 0.00 3.50
1264 1705 2.401766 CGGCATGAGCACCAACCTC 61.402 63.158 0.00 0.00 44.61 3.85
1708 2149 4.003788 CTGGTGGCCTCGTCCGTT 62.004 66.667 3.32 0.00 0.00 4.44
2259 2713 4.408821 GTCATCGCCTGGGTGCCA 62.409 66.667 0.00 0.00 0.00 4.92
2622 3076 0.458716 GGAACTACCTCAGCACGCTC 60.459 60.000 0.00 0.00 35.41 5.03
2805 3262 0.757188 AGAAGACCGCCGGAGATGAT 60.757 55.000 11.71 0.00 0.00 2.45
2806 3263 0.319125 GAAGACCGCCGGAGATGATC 60.319 60.000 11.71 0.00 0.00 2.92
2807 3264 1.043116 AAGACCGCCGGAGATGATCA 61.043 55.000 11.71 0.00 0.00 2.92
2819 3276 0.107456 GATGATCACCCAGACGCCAT 59.893 55.000 0.00 0.00 0.00 4.40
2829 3286 1.097547 CAGACGCCATAGCCAAAGGG 61.098 60.000 0.00 0.00 34.57 3.95
2836 3293 0.179006 CATAGCCAAAGGGGGAGCTC 60.179 60.000 4.71 4.71 36.79 4.09
2859 3316 4.219264 TGATTGATGCACATGACCAGTA 57.781 40.909 0.00 0.00 0.00 2.74
2860 3317 4.587891 TGATTGATGCACATGACCAGTAA 58.412 39.130 0.00 0.00 0.00 2.24
2861 3318 5.008980 TGATTGATGCACATGACCAGTAAA 58.991 37.500 0.00 0.00 0.00 2.01
2862 3319 5.653330 TGATTGATGCACATGACCAGTAAAT 59.347 36.000 0.00 0.00 0.00 1.40
2863 3320 6.827762 TGATTGATGCACATGACCAGTAAATA 59.172 34.615 0.00 0.00 0.00 1.40
2875 3332 7.770366 TGACCAGTAAATAAGTGAGTGACTA 57.230 36.000 0.00 0.00 33.09 2.59
2906 3415 4.923281 GGTTGGTGTATGAATGTTGAAAGC 59.077 41.667 0.00 0.00 0.00 3.51
2997 3513 6.854892 GTGTGATTTGTGACTTCAAGATTCAG 59.145 38.462 0.00 0.00 0.00 3.02
3053 3569 6.707608 GTCTTGGAAAAATCTGGCAGAAAAAT 59.292 34.615 22.84 8.60 0.00 1.82
3057 3573 7.504403 TGGAAAAATCTGGCAGAAAAATGTTA 58.496 30.769 22.84 2.32 0.00 2.41
3075 3591 9.975218 AAAATGTTAAGATGTTATGTACTCCCT 57.025 29.630 0.00 0.00 0.00 4.20
3076 3592 9.614792 AAATGTTAAGATGTTATGTACTCCCTC 57.385 33.333 0.00 0.00 0.00 4.30
3077 3593 7.120923 TGTTAAGATGTTATGTACTCCCTCC 57.879 40.000 0.00 0.00 0.00 4.30
3078 3594 4.939052 AAGATGTTATGTACTCCCTCCG 57.061 45.455 0.00 0.00 0.00 4.63
3079 3595 4.180377 AGATGTTATGTACTCCCTCCGA 57.820 45.455 0.00 0.00 0.00 4.55
3080 3596 4.742012 AGATGTTATGTACTCCCTCCGAT 58.258 43.478 0.00 0.00 0.00 4.18
3081 3597 4.767928 AGATGTTATGTACTCCCTCCGATC 59.232 45.833 0.00 0.00 0.00 3.69
3082 3598 4.180377 TGTTATGTACTCCCTCCGATCT 57.820 45.455 0.00 0.00 0.00 2.75
3083 3599 4.142790 TGTTATGTACTCCCTCCGATCTC 58.857 47.826 0.00 0.00 0.00 2.75
3084 3600 4.142790 GTTATGTACTCCCTCCGATCTCA 58.857 47.826 0.00 0.00 0.00 3.27
3085 3601 3.534357 ATGTACTCCCTCCGATCTCAT 57.466 47.619 0.00 0.00 0.00 2.90
3086 3602 4.659529 ATGTACTCCCTCCGATCTCATA 57.340 45.455 0.00 0.00 0.00 2.15
3087 3603 4.448720 TGTACTCCCTCCGATCTCATAA 57.551 45.455 0.00 0.00 0.00 1.90
3088 3604 4.999310 TGTACTCCCTCCGATCTCATAAT 58.001 43.478 0.00 0.00 0.00 1.28
3089 3605 4.767409 TGTACTCCCTCCGATCTCATAATG 59.233 45.833 0.00 0.00 0.00 1.90
3090 3606 3.850752 ACTCCCTCCGATCTCATAATGT 58.149 45.455 0.00 0.00 0.00 2.71
3091 3607 4.999310 ACTCCCTCCGATCTCATAATGTA 58.001 43.478 0.00 0.00 0.00 2.29
3092 3608 5.394738 ACTCCCTCCGATCTCATAATGTAA 58.605 41.667 0.00 0.00 0.00 2.41
3093 3609 5.839063 ACTCCCTCCGATCTCATAATGTAAA 59.161 40.000 0.00 0.00 0.00 2.01
3094 3610 6.498651 ACTCCCTCCGATCTCATAATGTAAAT 59.501 38.462 0.00 0.00 0.00 1.40
3095 3611 7.674348 ACTCCCTCCGATCTCATAATGTAAATA 59.326 37.037 0.00 0.00 0.00 1.40
3096 3612 8.067751 TCCCTCCGATCTCATAATGTAAATAG 57.932 38.462 0.00 0.00 0.00 1.73
3097 3613 7.674348 TCCCTCCGATCTCATAATGTAAATAGT 59.326 37.037 0.00 0.00 0.00 2.12
3098 3614 7.761704 CCCTCCGATCTCATAATGTAAATAGTG 59.238 40.741 0.00 0.00 0.00 2.74
3099 3615 8.307483 CCTCCGATCTCATAATGTAAATAGTGT 58.693 37.037 0.00 0.00 0.00 3.55
3100 3616 9.347934 CTCCGATCTCATAATGTAAATAGTGTC 57.652 37.037 0.00 0.00 0.00 3.67
3101 3617 8.856103 TCCGATCTCATAATGTAAATAGTGTCA 58.144 33.333 0.00 0.00 0.00 3.58
3102 3618 9.476202 CCGATCTCATAATGTAAATAGTGTCAA 57.524 33.333 0.00 0.00 0.00 3.18
3128 3644 6.741992 AAAACGTCTTGCATTATGAGATGA 57.258 33.333 10.77 0.00 32.22 2.92
3129 3645 5.980698 AACGTCTTGCATTATGAGATGAG 57.019 39.130 10.77 0.00 32.22 2.90
3130 3646 5.016051 ACGTCTTGCATTATGAGATGAGT 57.984 39.130 10.77 0.04 32.22 3.41
3131 3647 6.149129 ACGTCTTGCATTATGAGATGAGTA 57.851 37.500 10.77 0.00 32.22 2.59
3132 3648 6.212235 ACGTCTTGCATTATGAGATGAGTAG 58.788 40.000 10.77 0.00 32.22 2.57
3215 3732 3.399181 GGACAGCGGATGGGGTCA 61.399 66.667 0.00 0.00 32.00 4.02
3229 3747 1.557269 GGGTCATGTCTGGCCTGTCT 61.557 60.000 3.32 0.00 46.99 3.41
3274 3793 1.865865 CACGCTACCGCATCCTTTAT 58.134 50.000 0.00 0.00 38.22 1.40
3297 3820 2.550978 CATCCTGTCCGCGTCTATTTT 58.449 47.619 4.92 0.00 0.00 1.82
3337 3868 1.677552 CCAAGCCCTAGTTCACGGT 59.322 57.895 0.00 0.00 0.00 4.83
3576 4113 0.250124 AAAACAGCCACGACCGATCA 60.250 50.000 0.00 0.00 0.00 2.92
3808 4346 2.060980 ACCTCCTCCATGTCGAGCC 61.061 63.158 0.00 0.00 0.00 4.70
3809 4347 2.415010 CTCCTCCATGTCGAGCCG 59.585 66.667 0.00 0.00 0.00 5.52
3810 4348 3.144120 CTCCTCCATGTCGAGCCGG 62.144 68.421 0.00 0.00 0.00 6.13
3811 4349 4.899239 CCTCCATGTCGAGCCGGC 62.899 72.222 21.89 21.89 0.00 6.13
3837 4375 3.485431 CTGCTCACGCCGAAGCAG 61.485 66.667 23.79 23.79 46.69 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.366640 TCCGATCGATCTTCCCTCTT 57.633 50.000 22.43 0.00 0.00 2.85
26 27 1.152247 AGAGAGGTGGCCACACTGA 60.152 57.895 35.78 0.00 46.85 3.41
55 56 0.959372 GTGCTGTGCAGGAGCTGAAT 60.959 55.000 16.58 0.00 40.08 2.57
130 131 3.386402 GGAAGGATCTTCTTCTCCGTCAT 59.614 47.826 10.40 0.00 40.51 3.06
137 138 3.119319 GGAAGGGGAAGGATCTTCTTCT 58.881 50.000 10.40 3.53 41.94 2.85
138 139 3.119319 AGGAAGGGGAAGGATCTTCTTC 58.881 50.000 7.47 3.77 41.64 2.87
139 140 3.119319 GAGGAAGGGGAAGGATCTTCTT 58.881 50.000 7.47 0.00 37.59 2.52
140 141 2.320675 AGAGGAAGGGGAAGGATCTTCT 59.679 50.000 7.47 0.00 37.59 2.85
141 142 2.770447 AGAGGAAGGGGAAGGATCTTC 58.230 52.381 0.00 0.00 36.95 2.87
142 143 2.980699 AGAGGAAGGGGAAGGATCTT 57.019 50.000 0.00 0.00 0.00 2.40
143 144 2.630995 GGAAGAGGAAGGGGAAGGATCT 60.631 54.545 0.00 0.00 0.00 2.75
144 145 1.771854 GGAAGAGGAAGGGGAAGGATC 59.228 57.143 0.00 0.00 0.00 3.36
145 146 1.629464 GGGAAGAGGAAGGGGAAGGAT 60.629 57.143 0.00 0.00 0.00 3.24
146 147 0.253207 GGGAAGAGGAAGGGGAAGGA 60.253 60.000 0.00 0.00 0.00 3.36
147 148 1.282653 GGGGAAGAGGAAGGGGAAGG 61.283 65.000 0.00 0.00 0.00 3.46
148 149 1.627297 CGGGGAAGAGGAAGGGGAAG 61.627 65.000 0.00 0.00 0.00 3.46
149 150 1.615424 CGGGGAAGAGGAAGGGGAA 60.615 63.158 0.00 0.00 0.00 3.97
150 151 2.040606 CGGGGAAGAGGAAGGGGA 59.959 66.667 0.00 0.00 0.00 4.81
151 152 2.285442 ACGGGGAAGAGGAAGGGG 60.285 66.667 0.00 0.00 0.00 4.79
152 153 2.368011 GGACGGGGAAGAGGAAGGG 61.368 68.421 0.00 0.00 0.00 3.95
153 154 2.368011 GGGACGGGGAAGAGGAAGG 61.368 68.421 0.00 0.00 0.00 3.46
154 155 2.368011 GGGGACGGGGAAGAGGAAG 61.368 68.421 0.00 0.00 0.00 3.46
155 156 2.285144 GGGGACGGGGAAGAGGAA 60.285 66.667 0.00 0.00 0.00 3.36
156 157 3.281787 AGGGGACGGGGAAGAGGA 61.282 66.667 0.00 0.00 0.00 3.71
157 158 2.764547 GAGGGGACGGGGAAGAGG 60.765 72.222 0.00 0.00 0.00 3.69
158 159 2.764547 GGAGGGGACGGGGAAGAG 60.765 72.222 0.00 0.00 0.00 2.85
159 160 4.410033 GGGAGGGGACGGGGAAGA 62.410 72.222 0.00 0.00 0.00 2.87
216 217 1.811359 CTAGACGTGAACGGAAGGAGT 59.189 52.381 7.86 0.00 44.95 3.85
217 218 2.082231 TCTAGACGTGAACGGAAGGAG 58.918 52.381 7.86 0.00 44.95 3.69
218 219 2.189594 TCTAGACGTGAACGGAAGGA 57.810 50.000 7.86 0.00 44.95 3.36
219 220 3.376234 TGTATCTAGACGTGAACGGAAGG 59.624 47.826 7.86 0.00 44.95 3.46
220 221 4.611310 TGTATCTAGACGTGAACGGAAG 57.389 45.455 7.86 1.90 44.95 3.46
222 223 4.272748 CAGATGTATCTAGACGTGAACGGA 59.727 45.833 7.86 0.00 38.43 4.69
223 224 4.035324 ACAGATGTATCTAGACGTGAACGG 59.965 45.833 7.86 0.00 38.43 4.44
224 225 5.158101 ACAGATGTATCTAGACGTGAACG 57.842 43.478 0.00 0.40 39.40 3.95
225 226 7.027760 TCAAACAGATGTATCTAGACGTGAAC 58.972 38.462 0.00 0.00 34.85 3.18
226 227 7.153217 TCAAACAGATGTATCTAGACGTGAA 57.847 36.000 0.00 0.00 34.85 3.18
228 229 5.457148 GCTCAAACAGATGTATCTAGACGTG 59.543 44.000 0.00 0.00 34.85 4.49
229 230 5.583495 GCTCAAACAGATGTATCTAGACGT 58.417 41.667 0.00 0.00 34.85 4.34
231 232 5.683743 GTCGCTCAAACAGATGTATCTAGAC 59.316 44.000 0.00 0.00 34.85 2.59
233 234 5.582550 TGTCGCTCAAACAGATGTATCTAG 58.417 41.667 0.00 0.00 34.85 2.43
234 235 5.576447 TGTCGCTCAAACAGATGTATCTA 57.424 39.130 0.00 0.00 34.85 1.98
235 236 4.456280 TGTCGCTCAAACAGATGTATCT 57.544 40.909 0.00 0.00 37.72 1.98
236 237 4.627467 AGTTGTCGCTCAAACAGATGTATC 59.373 41.667 0.00 0.00 37.81 2.24
237 238 4.569943 AGTTGTCGCTCAAACAGATGTAT 58.430 39.130 0.00 0.00 37.81 2.29
238 239 3.990092 AGTTGTCGCTCAAACAGATGTA 58.010 40.909 0.00 0.00 37.81 2.29
239 240 2.838736 AGTTGTCGCTCAAACAGATGT 58.161 42.857 0.00 0.00 37.81 3.06
240 241 4.990543 TTAGTTGTCGCTCAAACAGATG 57.009 40.909 0.00 0.00 37.81 2.90
241 242 6.258727 CCATATTAGTTGTCGCTCAAACAGAT 59.741 38.462 0.00 0.00 37.81 2.90
242 243 5.580691 CCATATTAGTTGTCGCTCAAACAGA 59.419 40.000 0.00 0.00 37.81 3.41
243 244 5.580691 TCCATATTAGTTGTCGCTCAAACAG 59.419 40.000 0.00 0.00 37.81 3.16
244 245 5.483811 TCCATATTAGTTGTCGCTCAAACA 58.516 37.500 0.00 0.00 37.81 2.83
245 246 6.248631 GTTCCATATTAGTTGTCGCTCAAAC 58.751 40.000 0.00 0.00 37.81 2.93
246 247 5.062934 CGTTCCATATTAGTTGTCGCTCAAA 59.937 40.000 0.00 0.00 37.81 2.69
247 248 4.565166 CGTTCCATATTAGTTGTCGCTCAA 59.435 41.667 0.00 0.00 0.00 3.02
248 249 4.109766 CGTTCCATATTAGTTGTCGCTCA 58.890 43.478 0.00 0.00 0.00 4.26
249 250 3.489785 CCGTTCCATATTAGTTGTCGCTC 59.510 47.826 0.00 0.00 0.00 5.03
250 251 3.131577 TCCGTTCCATATTAGTTGTCGCT 59.868 43.478 0.00 0.00 0.00 4.93
251 252 3.450578 TCCGTTCCATATTAGTTGTCGC 58.549 45.455 0.00 0.00 0.00 5.19
252 253 4.049186 CCTCCGTTCCATATTAGTTGTCG 58.951 47.826 0.00 0.00 0.00 4.35
253 254 4.100498 TCCCTCCGTTCCATATTAGTTGTC 59.900 45.833 0.00 0.00 0.00 3.18
254 255 4.035112 TCCCTCCGTTCCATATTAGTTGT 58.965 43.478 0.00 0.00 0.00 3.32
255 256 4.101119 ACTCCCTCCGTTCCATATTAGTTG 59.899 45.833 0.00 0.00 0.00 3.16
256 257 4.296056 ACTCCCTCCGTTCCATATTAGTT 58.704 43.478 0.00 0.00 0.00 2.24
257 258 3.924922 ACTCCCTCCGTTCCATATTAGT 58.075 45.455 0.00 0.00 0.00 2.24
258 259 5.078256 ACTACTCCCTCCGTTCCATATTAG 58.922 45.833 0.00 0.00 0.00 1.73
259 260 5.070823 ACTACTCCCTCCGTTCCATATTA 57.929 43.478 0.00 0.00 0.00 0.98
260 261 3.896272 GACTACTCCCTCCGTTCCATATT 59.104 47.826 0.00 0.00 0.00 1.28
261 262 3.498334 GACTACTCCCTCCGTTCCATAT 58.502 50.000 0.00 0.00 0.00 1.78
262 263 2.747467 CGACTACTCCCTCCGTTCCATA 60.747 54.545 0.00 0.00 0.00 2.74
263 264 1.777941 GACTACTCCCTCCGTTCCAT 58.222 55.000 0.00 0.00 0.00 3.41
264 265 0.679002 CGACTACTCCCTCCGTTCCA 60.679 60.000 0.00 0.00 0.00 3.53
265 266 0.679321 ACGACTACTCCCTCCGTTCC 60.679 60.000 0.00 0.00 0.00 3.62
266 267 0.450983 CACGACTACTCCCTCCGTTC 59.549 60.000 0.00 0.00 0.00 3.95
267 268 0.037303 TCACGACTACTCCCTCCGTT 59.963 55.000 0.00 0.00 0.00 4.44
268 269 0.037303 TTCACGACTACTCCCTCCGT 59.963 55.000 0.00 0.00 0.00 4.69
269 270 1.171308 TTTCACGACTACTCCCTCCG 58.829 55.000 0.00 0.00 0.00 4.63
270 271 3.006644 ACTTTTTCACGACTACTCCCTCC 59.993 47.826 0.00 0.00 0.00 4.30
271 272 4.254402 ACTTTTTCACGACTACTCCCTC 57.746 45.455 0.00 0.00 0.00 4.30
272 273 4.220163 CCTACTTTTTCACGACTACTCCCT 59.780 45.833 0.00 0.00 0.00 4.20
273 274 4.021632 ACCTACTTTTTCACGACTACTCCC 60.022 45.833 0.00 0.00 0.00 4.30
274 275 5.131594 ACCTACTTTTTCACGACTACTCC 57.868 43.478 0.00 0.00 0.00 3.85
275 276 6.072230 ACCTACCTACTTTTTCACGACTACTC 60.072 42.308 0.00 0.00 0.00 2.59
276 277 5.772169 ACCTACCTACTTTTTCACGACTACT 59.228 40.000 0.00 0.00 0.00 2.57
277 278 5.860716 CACCTACCTACTTTTTCACGACTAC 59.139 44.000 0.00 0.00 0.00 2.73
286 287 6.614496 CCTATCTACCCACCTACCTACTTTTT 59.386 42.308 0.00 0.00 0.00 1.94
390 391 1.664017 CGGGCGAGATGAGCATGAG 60.664 63.158 0.00 0.00 36.08 2.90
391 392 2.127232 TCGGGCGAGATGAGCATGA 61.127 57.895 0.00 0.00 36.08 3.07
396 397 2.329690 CGAGTCGGGCGAGATGAG 59.670 66.667 4.10 0.00 0.00 2.90
418 419 1.133025 CTGTGGCATCCATCGGAAAAC 59.867 52.381 0.00 0.00 35.28 2.43
461 462 3.306502 GGGATTCTCGTTGGAACTACACA 60.307 47.826 0.00 0.00 0.00 3.72
462 463 3.056035 AGGGATTCTCGTTGGAACTACAC 60.056 47.826 0.00 0.00 0.00 2.90
463 464 3.170717 AGGGATTCTCGTTGGAACTACA 58.829 45.455 0.00 0.00 0.00 2.74
464 465 3.430513 GGAGGGATTCTCGTTGGAACTAC 60.431 52.174 0.00 0.00 43.34 2.73
488 497 2.834113 AGGAAGGATCGGGAAGAAAGA 58.166 47.619 0.00 0.00 0.00 2.52
498 507 1.521681 GGCGTGGAAGGAAGGATCG 60.522 63.158 0.00 0.00 0.00 3.69
499 508 1.153147 GGGCGTGGAAGGAAGGATC 60.153 63.158 0.00 0.00 0.00 3.36
500 509 2.998949 GGGCGTGGAAGGAAGGAT 59.001 61.111 0.00 0.00 0.00 3.24
501 510 3.702048 CGGGCGTGGAAGGAAGGA 61.702 66.667 0.00 0.00 0.00 3.36
502 511 3.952628 GACGGGCGTGGAAGGAAGG 62.953 68.421 0.00 0.00 0.00 3.46
503 512 2.434359 GACGGGCGTGGAAGGAAG 60.434 66.667 0.00 0.00 0.00 3.46
504 513 4.011517 GGACGGGCGTGGAAGGAA 62.012 66.667 0.00 0.00 0.00 3.36
506 515 4.096003 ATGGACGGGCGTGGAAGG 62.096 66.667 0.00 0.00 0.00 3.46
507 516 2.796483 TTCATGGACGGGCGTGGAAG 62.796 60.000 0.00 0.00 0.00 3.46
508 517 2.191786 ATTCATGGACGGGCGTGGAA 62.192 55.000 0.00 0.00 0.00 3.53
509 518 2.587322 GATTCATGGACGGGCGTGGA 62.587 60.000 0.00 0.00 0.00 4.02
510 519 2.124736 ATTCATGGACGGGCGTGG 60.125 61.111 0.00 0.00 0.00 4.94
511 520 2.180204 GGATTCATGGACGGGCGTG 61.180 63.158 0.00 0.00 0.00 5.34
512 521 2.189521 GGATTCATGGACGGGCGT 59.810 61.111 0.00 0.00 0.00 5.68
513 522 2.591715 GGGATTCATGGACGGGCG 60.592 66.667 0.00 0.00 0.00 6.13
514 523 2.591715 CGGGATTCATGGACGGGC 60.592 66.667 0.00 0.00 0.00 6.13
515 524 1.523711 CACGGGATTCATGGACGGG 60.524 63.158 0.00 0.00 0.00 5.28
516 525 0.106708 ATCACGGGATTCATGGACGG 59.893 55.000 0.00 0.00 0.00 4.79
517 526 1.953559 AATCACGGGATTCATGGACG 58.046 50.000 7.19 0.00 39.55 4.79
522 531 6.720112 ATCAAATCAAATCACGGGATTCAT 57.280 33.333 14.46 6.17 42.87 2.57
552 561 1.164313 ATCCATCCAATCCAGGGCAT 58.836 50.000 0.00 0.00 0.00 4.40
559 568 4.214971 CAGATTCGTTCATCCATCCAATCC 59.785 45.833 0.00 0.00 0.00 3.01
560 569 4.818546 ACAGATTCGTTCATCCATCCAATC 59.181 41.667 0.00 0.00 0.00 2.67
563 572 3.534554 CACAGATTCGTTCATCCATCCA 58.465 45.455 0.00 0.00 0.00 3.41
564 573 2.289002 GCACAGATTCGTTCATCCATCC 59.711 50.000 0.00 0.00 0.00 3.51
566 575 2.941064 CAGCACAGATTCGTTCATCCAT 59.059 45.455 0.00 0.00 0.00 3.41
567 576 2.028203 TCAGCACAGATTCGTTCATCCA 60.028 45.455 0.00 0.00 0.00 3.41
569 578 4.569966 AGATTCAGCACAGATTCGTTCATC 59.430 41.667 0.00 0.00 0.00 2.92
570 579 4.331992 CAGATTCAGCACAGATTCGTTCAT 59.668 41.667 0.00 0.00 0.00 2.57
571 580 3.681417 CAGATTCAGCACAGATTCGTTCA 59.319 43.478 0.00 0.00 0.00 3.18
572 581 3.063180 CCAGATTCAGCACAGATTCGTTC 59.937 47.826 0.00 0.00 0.00 3.95
573 582 3.005554 CCAGATTCAGCACAGATTCGTT 58.994 45.455 0.00 0.00 0.00 3.85
574 583 2.027745 ACCAGATTCAGCACAGATTCGT 60.028 45.455 0.00 0.00 0.00 3.85
575 584 2.350804 CACCAGATTCAGCACAGATTCG 59.649 50.000 0.00 0.00 0.00 3.34
576 585 2.097142 GCACCAGATTCAGCACAGATTC 59.903 50.000 0.00 0.00 0.00 2.52
577 586 2.089980 GCACCAGATTCAGCACAGATT 58.910 47.619 0.00 0.00 0.00 2.40
578 587 1.681166 GGCACCAGATTCAGCACAGAT 60.681 52.381 0.00 0.00 0.00 2.90
579 588 0.321919 GGCACCAGATTCAGCACAGA 60.322 55.000 0.00 0.00 0.00 3.41
580 589 0.322277 AGGCACCAGATTCAGCACAG 60.322 55.000 0.00 0.00 0.00 3.66
581 590 0.607217 CAGGCACCAGATTCAGCACA 60.607 55.000 0.00 0.00 0.00 4.57
582 591 1.930908 GCAGGCACCAGATTCAGCAC 61.931 60.000 0.00 0.00 0.00 4.40
583 592 1.676635 GCAGGCACCAGATTCAGCA 60.677 57.895 0.00 0.00 0.00 4.41
584 593 2.413142 GGCAGGCACCAGATTCAGC 61.413 63.158 0.00 0.00 0.00 4.26
585 594 1.030488 CAGGCAGGCACCAGATTCAG 61.030 60.000 0.00 0.00 0.00 3.02
597 606 0.391395 CTCAGAGTGAAGCAGGCAGG 60.391 60.000 0.00 0.00 0.00 4.85
612 621 2.099592 GTGAGTCTCATGAGCCTCTCAG 59.900 54.545 28.55 1.92 44.08 3.35
621 630 2.297315 GTGTGGTCAGTGAGTCTCATGA 59.703 50.000 5.68 8.13 0.00 3.07
622 631 2.036346 TGTGTGGTCAGTGAGTCTCATG 59.964 50.000 5.68 5.96 0.00 3.07
623 632 2.298446 CTGTGTGGTCAGTGAGTCTCAT 59.702 50.000 5.68 0.00 0.00 2.90
624 633 1.683385 CTGTGTGGTCAGTGAGTCTCA 59.317 52.381 0.00 0.00 0.00 3.27
625 634 1.683917 ACTGTGTGGTCAGTGAGTCTC 59.316 52.381 0.00 0.00 45.40 3.36
626 635 1.683917 GACTGTGTGGTCAGTGAGTCT 59.316 52.381 4.06 0.00 46.81 3.24
627 636 1.683917 AGACTGTGTGGTCAGTGAGTC 59.316 52.381 4.06 0.00 46.81 3.36
628 637 1.683917 GAGACTGTGTGGTCAGTGAGT 59.316 52.381 4.06 0.00 46.81 3.41
631 640 2.352225 GCTAGAGACTGTGTGGTCAGTG 60.352 54.545 4.06 0.00 46.81 3.66
633 642 2.163412 GAGCTAGAGACTGTGTGGTCAG 59.837 54.545 0.00 0.00 38.57 3.51
634 643 2.163509 GAGCTAGAGACTGTGTGGTCA 58.836 52.381 0.00 0.00 38.57 4.02
635 644 2.163412 CAGAGCTAGAGACTGTGTGGTC 59.837 54.545 0.00 0.00 36.56 4.02
636 645 2.166829 CAGAGCTAGAGACTGTGTGGT 58.833 52.381 0.00 0.00 0.00 4.16
637 646 1.135141 GCAGAGCTAGAGACTGTGTGG 60.135 57.143 0.00 0.00 34.60 4.17
638 647 1.543358 TGCAGAGCTAGAGACTGTGTG 59.457 52.381 0.00 0.00 34.60 3.82
639 648 1.916506 TGCAGAGCTAGAGACTGTGT 58.083 50.000 0.00 0.00 34.60 3.72
640 649 3.309961 TTTGCAGAGCTAGAGACTGTG 57.690 47.619 0.00 0.00 34.60 3.66
641 650 3.118811 GGATTTGCAGAGCTAGAGACTGT 60.119 47.826 0.00 0.00 34.60 3.55
642 651 3.456280 GGATTTGCAGAGCTAGAGACTG 58.544 50.000 0.00 0.31 35.14 3.51
643 652 2.433970 GGGATTTGCAGAGCTAGAGACT 59.566 50.000 0.00 0.00 0.00 3.24
644 653 2.484594 GGGGATTTGCAGAGCTAGAGAC 60.485 54.545 0.00 0.00 0.00 3.36
652 691 1.209504 TCTAACGGGGGATTTGCAGAG 59.790 52.381 0.00 0.00 0.00 3.35
670 709 7.934855 ACTGATATGCTGATTTGAAACTTCT 57.065 32.000 0.00 0.00 0.00 2.85
692 731 1.746615 CTGCGGCCAGTGCATAACT 60.747 57.895 2.24 0.00 42.32 2.24
712 751 1.014352 CCGCTTTAGACCCAAATCGG 58.986 55.000 0.00 0.00 39.81 4.18
738 777 3.057033 AGAAAGAAACTAGTAAGGCGCGA 60.057 43.478 12.10 0.00 0.00 5.87
743 782 5.179533 GGGAGCAGAAAGAAACTAGTAAGG 58.820 45.833 0.00 0.00 0.00 2.69
748 787 4.836825 TCATGGGAGCAGAAAGAAACTAG 58.163 43.478 0.00 0.00 0.00 2.57
757 796 3.378512 ACAGACTATCATGGGAGCAGAA 58.621 45.455 0.00 0.00 0.00 3.02
758 797 2.961741 GACAGACTATCATGGGAGCAGA 59.038 50.000 0.00 0.00 0.00 4.26
759 798 2.964464 AGACAGACTATCATGGGAGCAG 59.036 50.000 0.00 0.00 0.00 4.24
760 799 2.697229 CAGACAGACTATCATGGGAGCA 59.303 50.000 0.00 0.00 0.00 4.26
761 800 2.697751 ACAGACAGACTATCATGGGAGC 59.302 50.000 0.00 0.00 0.00 4.70
762 801 4.037803 CAGACAGACAGACTATCATGGGAG 59.962 50.000 0.00 0.00 0.00 4.30
763 802 3.956848 CAGACAGACAGACTATCATGGGA 59.043 47.826 0.00 0.00 0.00 4.37
764 803 3.703556 ACAGACAGACAGACTATCATGGG 59.296 47.826 0.00 0.00 0.00 4.00
765 804 4.998671 ACAGACAGACAGACTATCATGG 57.001 45.455 0.00 0.00 0.00 3.66
766 805 6.206395 AGAACAGACAGACAGACTATCATG 57.794 41.667 0.00 0.00 0.00 3.07
767 806 6.435591 TCAAGAACAGACAGACAGACTATCAT 59.564 38.462 0.00 0.00 0.00 2.45
768 807 5.770162 TCAAGAACAGACAGACAGACTATCA 59.230 40.000 0.00 0.00 0.00 2.15
769 808 6.260870 TCAAGAACAGACAGACAGACTATC 57.739 41.667 0.00 0.00 0.00 2.08
770 809 6.849085 ATCAAGAACAGACAGACAGACTAT 57.151 37.500 0.00 0.00 0.00 2.12
771 810 6.656632 AATCAAGAACAGACAGACAGACTA 57.343 37.500 0.00 0.00 0.00 2.59
772 811 5.543507 AATCAAGAACAGACAGACAGACT 57.456 39.130 0.00 0.00 0.00 3.24
773 812 5.559799 GCAAATCAAGAACAGACAGACAGAC 60.560 44.000 0.00 0.00 0.00 3.51
783 822 5.164061 GGCGTTAATTGCAAATCAAGAACAG 60.164 40.000 1.71 0.00 38.22 3.16
811 850 7.475137 TGTAATAAAACCTGGAAGAAATGGG 57.525 36.000 0.00 0.00 34.07 4.00
813 852 8.757164 GGTTGTAATAAAACCTGGAAGAAATG 57.243 34.615 5.11 0.00 43.20 2.32
824 899 6.944290 ACTAGGGTGAAGGTTGTAATAAAACC 59.056 38.462 4.16 4.16 46.27 3.27
826 901 7.747690 TGACTAGGGTGAAGGTTGTAATAAAA 58.252 34.615 0.00 0.00 0.00 1.52
829 904 6.442564 ACATGACTAGGGTGAAGGTTGTAATA 59.557 38.462 0.00 0.00 0.00 0.98
837 912 3.981071 TGAACATGACTAGGGTGAAGG 57.019 47.619 0.00 0.00 0.00 3.46
840 915 4.141597 TGTTGTTGAACATGACTAGGGTGA 60.142 41.667 0.00 0.00 37.15 4.02
848 923 5.215160 GGACAGATTGTTGTTGAACATGAC 58.785 41.667 0.00 0.00 41.77 3.06
853 928 4.630894 TGTGGACAGATTGTTGTTGAAC 57.369 40.909 0.00 0.00 0.00 3.18
855 930 5.590145 CAATTGTGGACAGATTGTTGTTGA 58.410 37.500 0.00 0.00 0.00 3.18
884 959 1.135972 CAGTGATTAACAGTGCGGTGC 60.136 52.381 0.00 0.00 41.99 5.01
894 969 8.287503 AGGTTTTTGTTATCGACAGTGATTAAC 58.712 33.333 0.00 0.00 39.94 2.01
931 1335 2.659016 CAGCGGCTCAGAGGAACA 59.341 61.111 0.00 0.00 0.00 3.18
959 1372 1.139308 CTCTCGCTGCTCAGTCAGG 59.861 63.158 0.00 0.00 34.74 3.86
970 1383 0.669932 CTTGCTGCTTGTCTCTCGCT 60.670 55.000 0.00 0.00 0.00 4.93
991 1404 3.414193 CTCCCCCATGGCTGCTGA 61.414 66.667 6.09 0.00 0.00 4.26
1243 1684 0.958382 GGTTGGTGCTCATGCCGTAA 60.958 55.000 0.00 0.00 38.71 3.18
1264 1705 1.726791 CGGTCCTTCATGAAGTTGACG 59.273 52.381 29.03 22.94 36.72 4.35
1582 2023 2.803670 CCGAACGACGACACGCAT 60.804 61.111 0.00 0.00 45.77 4.73
1651 2092 7.712797 TGGAGAAGTAGAACCAATTGAAAAAC 58.287 34.615 7.12 0.00 0.00 2.43
1654 2095 7.230747 TGATGGAGAAGTAGAACCAATTGAAA 58.769 34.615 7.12 0.00 36.00 2.69
1708 2149 1.284715 CGTCTGCACGTACACCAGA 59.715 57.895 0.00 0.00 41.42 3.86
2052 2506 2.203640 TCCTCCACCTGCGTCACT 60.204 61.111 0.00 0.00 0.00 3.41
2598 3052 0.970937 TGCTGAGGTAGTTCCCGAGG 60.971 60.000 0.00 0.00 36.75 4.63
2730 3187 0.108424 CGAAGTTGAGGAGGCTGAGG 60.108 60.000 0.00 0.00 0.00 3.86
2805 3262 2.731571 GGCTATGGCGTCTGGGTGA 61.732 63.158 0.00 0.00 39.81 4.02
2806 3263 2.203070 GGCTATGGCGTCTGGGTG 60.203 66.667 0.00 0.00 39.81 4.61
2807 3264 1.847798 TTTGGCTATGGCGTCTGGGT 61.848 55.000 0.00 0.00 39.81 4.51
2819 3276 0.624500 ATGAGCTCCCCCTTTGGCTA 60.625 55.000 12.15 0.00 35.01 3.93
2829 3286 1.607628 GTGCATCAATCATGAGCTCCC 59.392 52.381 12.15 0.00 39.39 4.30
2836 3293 3.380320 ACTGGTCATGTGCATCAATCATG 59.620 43.478 7.70 7.70 39.87 3.07
2859 3316 5.807520 CGCAGACATAGTCACTCACTTATTT 59.192 40.000 0.00 0.00 36.43 1.40
2860 3317 5.344066 CGCAGACATAGTCACTCACTTATT 58.656 41.667 0.00 0.00 36.43 1.40
2861 3318 4.202060 CCGCAGACATAGTCACTCACTTAT 60.202 45.833 0.00 0.00 36.43 1.73
2862 3319 3.128764 CCGCAGACATAGTCACTCACTTA 59.871 47.826 0.00 0.00 36.43 2.24
2863 3320 2.094494 CCGCAGACATAGTCACTCACTT 60.094 50.000 0.00 0.00 36.43 3.16
2875 3332 1.277842 TCATACACCAACCGCAGACAT 59.722 47.619 0.00 0.00 0.00 3.06
2906 3415 5.704515 TCTCAATCCTTGCTTTCTTCTTCTG 59.295 40.000 0.00 0.00 0.00 3.02
2935 3451 5.132144 TGTCCTCCCTTAATTTCACCTATCC 59.868 44.000 0.00 0.00 0.00 2.59
2997 3513 4.846779 TTAATCAACAAGGCAACACTCC 57.153 40.909 0.00 0.00 41.41 3.85
3053 3569 6.183360 CGGAGGGAGTACATAACATCTTAACA 60.183 42.308 0.00 0.00 0.00 2.41
3057 3573 4.543689 TCGGAGGGAGTACATAACATCTT 58.456 43.478 0.00 0.00 0.00 2.40
3072 3588 7.761704 CACTATTTACATTATGAGATCGGAGGG 59.238 40.741 0.00 0.00 0.00 4.30
3073 3589 8.307483 ACACTATTTACATTATGAGATCGGAGG 58.693 37.037 0.00 0.00 0.00 4.30
3074 3590 9.347934 GACACTATTTACATTATGAGATCGGAG 57.652 37.037 0.00 0.00 0.00 4.63
3075 3591 8.856103 TGACACTATTTACATTATGAGATCGGA 58.144 33.333 0.00 0.00 0.00 4.55
3076 3592 9.476202 TTGACACTATTTACATTATGAGATCGG 57.524 33.333 0.00 0.00 0.00 4.18
3104 3620 7.094634 ACTCATCTCATAATGCAAGACGTTTTT 60.095 33.333 0.00 0.00 0.00 1.94
3105 3621 6.372659 ACTCATCTCATAATGCAAGACGTTTT 59.627 34.615 0.00 0.00 0.00 2.43
3106 3622 5.877012 ACTCATCTCATAATGCAAGACGTTT 59.123 36.000 0.00 0.00 0.00 3.60
3107 3623 5.423015 ACTCATCTCATAATGCAAGACGTT 58.577 37.500 0.00 0.00 0.00 3.99
3108 3624 5.016051 ACTCATCTCATAATGCAAGACGT 57.984 39.130 0.00 0.00 0.00 4.34
3109 3625 6.212235 ACTACTCATCTCATAATGCAAGACG 58.788 40.000 0.00 0.00 0.00 4.18
3110 3626 8.356657 AGTACTACTCATCTCATAATGCAAGAC 58.643 37.037 0.00 0.00 0.00 3.01
3111 3627 8.470657 AGTACTACTCATCTCATAATGCAAGA 57.529 34.615 0.00 0.00 0.00 3.02
3114 3630 8.797438 CCTAAGTACTACTCATCTCATAATGCA 58.203 37.037 0.00 0.00 0.00 3.96
3115 3631 7.757624 GCCTAAGTACTACTCATCTCATAATGC 59.242 40.741 0.00 0.00 0.00 3.56
3116 3632 8.247562 GGCCTAAGTACTACTCATCTCATAATG 58.752 40.741 0.00 0.00 0.00 1.90
3117 3633 7.950684 TGGCCTAAGTACTACTCATCTCATAAT 59.049 37.037 3.32 0.00 0.00 1.28
3118 3634 7.295340 TGGCCTAAGTACTACTCATCTCATAA 58.705 38.462 3.32 0.00 0.00 1.90
3119 3635 6.849151 TGGCCTAAGTACTACTCATCTCATA 58.151 40.000 3.32 0.00 0.00 2.15
3120 3636 5.706447 TGGCCTAAGTACTACTCATCTCAT 58.294 41.667 3.32 0.00 0.00 2.90
3121 3637 5.125367 TGGCCTAAGTACTACTCATCTCA 57.875 43.478 3.32 0.00 0.00 3.27
3122 3638 5.595133 AGTTGGCCTAAGTACTACTCATCTC 59.405 44.000 3.32 0.00 0.00 2.75
3123 3639 5.520751 AGTTGGCCTAAGTACTACTCATCT 58.479 41.667 3.32 0.00 0.00 2.90
3124 3640 5.221283 GGAGTTGGCCTAAGTACTACTCATC 60.221 48.000 17.30 2.61 38.26 2.92
3125 3641 4.650131 GGAGTTGGCCTAAGTACTACTCAT 59.350 45.833 17.30 0.00 38.26 2.90
3126 3642 4.021916 GGAGTTGGCCTAAGTACTACTCA 58.978 47.826 17.30 2.35 38.26 3.41
3127 3643 4.021916 TGGAGTTGGCCTAAGTACTACTC 58.978 47.826 3.32 10.10 36.64 2.59
3128 3644 3.768215 GTGGAGTTGGCCTAAGTACTACT 59.232 47.826 3.32 0.00 0.00 2.57
3129 3645 3.118847 GGTGGAGTTGGCCTAAGTACTAC 60.119 52.174 3.32 1.07 0.00 2.73
3130 3646 3.102204 GGTGGAGTTGGCCTAAGTACTA 58.898 50.000 3.32 0.00 0.00 1.82
3131 3647 1.907255 GGTGGAGTTGGCCTAAGTACT 59.093 52.381 3.32 0.00 0.00 2.73
3132 3648 1.405121 CGGTGGAGTTGGCCTAAGTAC 60.405 57.143 3.32 0.93 0.00 2.73
3204 3720 1.146930 CCAGACATGACCCCATCCG 59.853 63.158 0.00 0.00 0.00 4.18
3215 3732 0.842030 TCCCAAGACAGGCCAGACAT 60.842 55.000 5.01 0.00 0.00 3.06
3260 3778 2.304761 GGATGGGATAAAGGATGCGGTA 59.695 50.000 0.00 0.00 0.00 4.02
3261 3779 1.073923 GGATGGGATAAAGGATGCGGT 59.926 52.381 0.00 0.00 0.00 5.68
3274 3793 2.561467 TAGACGCGGACAGGATGGGA 62.561 60.000 12.47 0.00 43.62 4.37
3337 3868 2.264480 CGGCGTGATGAACTGGGA 59.736 61.111 0.00 0.00 0.00 4.37
3562 4099 2.885861 GTCTGATCGGTCGTGGCT 59.114 61.111 0.42 0.00 0.00 4.75
3576 4113 0.608582 ACGGCTGAACTAGGTCGTCT 60.609 55.000 2.72 0.00 39.66 4.18
3722 4260 1.300971 GCAAAGGCAGCTCGACATCA 61.301 55.000 0.00 0.00 40.72 3.07
3790 4328 2.060980 GGCTCGACATGGAGGAGGT 61.061 63.158 0.00 0.00 34.56 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.