Multiple sequence alignment - TraesCS3B01G067800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G067800 chr3B 100.000 4223 0 0 1 4223 40230723 40234945 0.000000e+00 7799.0
1 TraesCS3B01G067800 chr3B 80.774 775 102 30 1315 2063 40165043 40165796 2.850000e-156 562.0
2 TraesCS3B01G067800 chr3B 87.775 409 42 3 2892 3294 39806735 39806329 4.940000e-129 472.0
3 TraesCS3B01G067800 chr3B 84.464 457 28 18 2323 2767 40232621 40233046 1.090000e-110 411.0
4 TraesCS3B01G067800 chr3B 84.464 457 28 18 1899 2324 40233045 40233489 1.090000e-110 411.0
5 TraesCS3B01G067800 chr3B 90.805 174 14 2 2150 2323 39807008 39806837 9.130000e-57 231.0
6 TraesCS3B01G067800 chr3B 96.875 32 1 0 700 731 747609171 747609202 2.000000e-03 54.7
7 TraesCS3B01G067800 chr3D 91.916 1472 68 21 628 2075 23053957 23055401 0.000000e+00 2012.0
8 TraesCS3B01G067800 chr3D 86.185 1426 90 58 997 2324 22375725 22377141 0.000000e+00 1443.0
9 TraesCS3B01G067800 chr3D 89.064 1015 74 21 2321 3317 22376693 22377688 0.000000e+00 1225.0
10 TraesCS3B01G067800 chr3D 92.150 828 43 12 2496 3317 23055525 23056336 0.000000e+00 1149.0
11 TraesCS3B01G067800 chr3D 84.058 1242 107 32 997 2190 22384094 22385292 0.000000e+00 1112.0
12 TraesCS3B01G067800 chr3D 91.995 737 32 12 3485 4213 22377681 22378398 0.000000e+00 1009.0
13 TraesCS3B01G067800 chr3D 90.970 598 26 13 3638 4223 23056570 23057151 0.000000e+00 780.0
14 TraesCS3B01G067800 chr3D 82.812 768 92 25 1315 2063 22726231 22725485 0.000000e+00 651.0
15 TraesCS3B01G067800 chr3D 89.731 409 31 6 2892 3294 22386073 22386476 2.910000e-141 512.0
16 TraesCS3B01G067800 chr3D 91.776 304 14 5 2318 2619 22384998 22385292 3.040000e-111 412.0
17 TraesCS3B01G067800 chr3D 93.208 265 4 6 2074 2324 23055525 23055789 1.110000e-100 377.0
18 TraesCS3B01G067800 chr3D 82.294 401 56 13 1336 1731 22930374 22930764 2.430000e-87 333.0
19 TraesCS3B01G067800 chr3D 93.956 182 8 3 3485 3665 23056329 23056508 5.380000e-69 272.0
20 TraesCS3B01G067800 chr3D 89.333 150 9 5 482 628 605156589 605156734 9.330000e-42 182.0
21 TraesCS3B01G067800 chr3D 95.652 92 3 1 2234 2324 22385921 22386012 3.400000e-31 147.0
22 TraesCS3B01G067800 chr3D 100.000 28 0 0 711 738 565155238 565155265 8.000000e-03 52.8
23 TraesCS3B01G067800 chr7B 93.271 639 33 4 1 629 40559685 40559047 0.000000e+00 933.0
24 TraesCS3B01G067800 chr7B 100.000 171 0 0 3316 3486 73176691 73176521 2.450000e-82 316.0
25 TraesCS3B01G067800 chr7B 73.892 406 61 31 242 629 332165159 332164781 2.060000e-23 121.0
26 TraesCS3B01G067800 chr3A 88.235 748 55 13 3485 4223 32144576 32145299 0.000000e+00 863.0
27 TraesCS3B01G067800 chr3A 84.910 835 58 28 1523 2323 32143253 32144053 0.000000e+00 782.0
28 TraesCS3B01G067800 chr3A 86.630 546 52 17 997 1531 32142467 32143002 6.080000e-163 584.0
29 TraesCS3B01G067800 chr3A 90.741 432 31 5 2892 3317 32144155 32144583 6.130000e-158 568.0
30 TraesCS3B01G067800 chr3A 83.529 510 40 23 2321 2827 32143646 32144114 1.800000e-118 436.0
31 TraesCS3B01G067800 chr3A 87.956 274 24 3 364 629 433565651 433565379 8.810000e-82 315.0
32 TraesCS3B01G067800 chr3A 77.778 198 29 7 433 629 258465061 258465244 1.610000e-19 108.0
33 TraesCS3B01G067800 chr2B 91.723 447 26 5 181 620 564873871 564874313 1.000000e-170 610.0
34 TraesCS3B01G067800 chr2B 87.018 285 29 4 18 302 108990974 108990698 8.810000e-82 315.0
35 TraesCS3B01G067800 chr2B 91.053 190 17 0 1 190 564868573 564868762 1.510000e-64 257.0
36 TraesCS3B01G067800 chr1B 88.095 294 25 7 340 626 68132764 68132474 1.450000e-89 340.0
37 TraesCS3B01G067800 chr1B 89.831 236 22 2 394 628 468252353 468252587 6.860000e-78 302.0
38 TraesCS3B01G067800 chr1B 84.528 265 31 6 1508 1767 510333372 510333113 1.950000e-63 254.0
39 TraesCS3B01G067800 chr1B 94.737 38 2 0 703 740 63174094 63174057 4.560000e-05 60.2
40 TraesCS3B01G067800 chr4B 87.544 281 27 4 18 298 620030861 620030589 6.810000e-83 318.0
41 TraesCS3B01G067800 chr1D 98.343 181 1 2 3315 3494 469836260 469836081 2.450000e-82 316.0
42 TraesCS3B01G067800 chr6D 99.425 174 0 1 3318 3491 443767541 443767369 8.810000e-82 315.0
43 TraesCS3B01G067800 chr6B 98.324 179 3 0 3312 3490 52021126 52020948 8.810000e-82 315.0
44 TraesCS3B01G067800 chr1A 97.826 184 1 3 3310 3492 307044401 307044220 8.810000e-82 315.0
45 TraesCS3B01G067800 chr1A 89.071 183 14 4 1768 1947 526135451 526135272 5.500000e-54 222.0
46 TraesCS3B01G067800 chr4A 98.315 178 3 0 3309 3486 325191225 325191402 3.170000e-81 313.0
47 TraesCS3B01G067800 chr5B 97.778 180 2 2 3313 3491 557109298 557109120 4.100000e-80 309.0
48 TraesCS3B01G067800 chr7D 97.253 182 3 2 3314 3494 100988780 100988600 1.470000e-79 307.0
49 TraesCS3B01G067800 chrUn 95.337 193 7 2 3315 3506 108724782 108724591 5.300000e-79 305.0
50 TraesCS3B01G067800 chr5D 86.397 272 30 3 1500 1767 62115671 62115403 1.490000e-74 291.0
51 TraesCS3B01G067800 chr5D 79.661 118 16 5 521 637 551595932 551596042 1.260000e-10 78.7
52 TraesCS3B01G067800 chr5D 100.000 36 0 0 703 738 233965981 233965946 2.720000e-07 67.6
53 TraesCS3B01G067800 chr5D 100.000 35 0 0 702 736 287788027 287788061 9.800000e-07 65.8
54 TraesCS3B01G067800 chr7A 88.525 183 18 3 1768 1947 17964129 17963947 7.110000e-53 219.0
55 TraesCS3B01G067800 chr5A 88.043 184 18 4 1768 1947 500029979 500029796 9.200000e-52 215.0
56 TraesCS3B01G067800 chr5A 78.140 215 30 8 433 645 166901070 166900871 2.060000e-23 121.0
57 TraesCS3B01G067800 chr6A 100.000 33 0 0 704 736 199010176 199010144 1.270000e-05 62.1
58 TraesCS3B01G067800 chr2D 97.059 34 1 0 703 736 12548181 12548214 1.640000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G067800 chr3B 40230723 40234945 4222 False 2873.666667 7799 89.642667 1 4223 3 chr3B.!!$F3 4222
1 TraesCS3B01G067800 chr3B 40165043 40165796 753 False 562.000000 562 80.774000 1315 2063 1 chr3B.!!$F1 748
2 TraesCS3B01G067800 chr3B 39806329 39807008 679 True 351.500000 472 89.290000 2150 3294 2 chr3B.!!$R1 1144
3 TraesCS3B01G067800 chr3D 22375725 22378398 2673 False 1225.666667 1443 89.081333 997 4213 3 chr3D.!!$F4 3216
4 TraesCS3B01G067800 chr3D 23053957 23057151 3194 False 918.000000 2012 92.440000 628 4223 5 chr3D.!!$F6 3595
5 TraesCS3B01G067800 chr3D 22725485 22726231 746 True 651.000000 651 82.812000 1315 2063 1 chr3D.!!$R1 748
6 TraesCS3B01G067800 chr3D 22384094 22386476 2382 False 545.750000 1112 90.304250 997 3294 4 chr3D.!!$F5 2297
7 TraesCS3B01G067800 chr7B 40559047 40559685 638 True 933.000000 933 93.271000 1 629 1 chr7B.!!$R1 628
8 TraesCS3B01G067800 chr3A 32142467 32145299 2832 False 646.600000 863 86.809000 997 4223 5 chr3A.!!$F2 3226

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 621 0.383949 TTTCTCCCTTTGCAACGCAC 59.616 50.0 0.00 0.00 38.71 5.34 F
905 917 0.610174 ACGGAGAGCTTGCAAGATCA 59.390 50.0 37.79 0.64 43.60 2.92 F
2312 2807 0.179051 CTCCCTCTCCTGCTCAATGC 60.179 60.0 0.00 0.00 43.25 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2293 2788 0.179051 GCATTGAGCAGGAGAGGGAG 60.179 60.0 0.00 0.0 44.79 4.30 R
2523 3018 0.252761 CCCATTGGCCCCACAATTTC 59.747 55.0 0.00 0.0 38.94 2.17 R
3480 4577 0.036952 CCACGAGCTTGACCATCAGT 60.037 55.0 8.31 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.488489 CCCACGAACGCTAATGAAAAAG 58.512 45.455 0.00 0.00 0.00 2.27
74 76 8.645110 AGGAAAATCAACAATCTTTCTTCATGT 58.355 29.630 0.00 0.00 0.00 3.21
162 164 6.867550 TCCTGTCTTACATGTAGATCACTTG 58.132 40.000 5.56 2.96 38.09 3.16
202 204 2.234143 GAGAGCCCCCAATGCTATTTC 58.766 52.381 0.00 0.00 39.69 2.17
214 216 6.971527 CAATGCTATTTCATTGCTTTTGGA 57.028 33.333 3.91 0.00 44.38 3.53
278 280 5.411361 TCAAATAGACCACTTCCATTGAACG 59.589 40.000 0.00 0.00 0.00 3.95
286 288 4.466828 CACTTCCATTGAACGTGAATGTC 58.533 43.478 15.70 0.00 34.39 3.06
304 306 2.027192 TGTCCATCCACACTAAGAAGCC 60.027 50.000 0.00 0.00 0.00 4.35
312 314 2.875933 CACACTAAGAAGCCCGAAACAA 59.124 45.455 0.00 0.00 0.00 2.83
318 320 7.280205 ACACTAAGAAGCCCGAAACAATAATAG 59.720 37.037 0.00 0.00 0.00 1.73
344 346 1.257743 TGAGGCGTATGCTATCTCCC 58.742 55.000 6.92 0.00 42.25 4.30
359 361 5.990996 GCTATCTCCCTCTCTCTGAATTTTG 59.009 44.000 0.00 0.00 0.00 2.44
363 365 5.046735 TCTCCCTCTCTCTGAATTTTGTGAG 60.047 44.000 0.00 0.00 0.00 3.51
402 411 7.552687 TCAACTAGCAATTTCGGATGACTAAAT 59.447 33.333 0.00 0.00 0.00 1.40
415 424 9.613428 TCGGATGACTAAATTTTATCATGTTCT 57.387 29.630 17.15 0.00 31.96 3.01
549 559 7.459795 TTTGCATCACCTATGAATGTGTTTA 57.540 32.000 0.00 0.00 38.69 2.01
609 619 2.217429 TTTTTCTCCCTTTGCAACGC 57.783 45.000 0.00 0.00 0.00 4.84
610 620 1.107114 TTTTCTCCCTTTGCAACGCA 58.893 45.000 0.00 0.00 36.47 5.24
611 621 0.383949 TTTCTCCCTTTGCAACGCAC 59.616 50.000 0.00 0.00 38.71 5.34
612 622 1.781025 TTCTCCCTTTGCAACGCACG 61.781 55.000 0.00 0.00 38.71 5.34
613 623 3.254014 CTCCCTTTGCAACGCACGG 62.254 63.158 0.00 0.00 38.71 4.94
614 624 4.341502 CCCTTTGCAACGCACGGG 62.342 66.667 0.00 7.82 41.11 5.28
615 625 4.999939 CCTTTGCAACGCACGGGC 63.000 66.667 0.00 0.00 38.71 6.13
616 626 4.263209 CTTTGCAACGCACGGGCA 62.263 61.111 11.77 7.43 38.71 5.36
617 627 3.556543 CTTTGCAACGCACGGGCAT 62.557 57.895 11.77 0.00 38.71 4.40
618 628 3.144120 TTTGCAACGCACGGGCATT 62.144 52.632 11.77 0.00 38.71 3.56
619 629 2.635229 TTTGCAACGCACGGGCATTT 62.635 50.000 11.77 0.00 38.71 2.32
620 630 3.105157 GCAACGCACGGGCATTTG 61.105 61.111 11.77 13.80 41.24 2.32
621 631 2.334653 CAACGCACGGGCATTTGT 59.665 55.556 11.77 0.00 41.24 2.83
622 632 2.015627 CAACGCACGGGCATTTGTG 61.016 57.895 11.77 0.00 41.24 3.33
659 669 4.019174 CACAAATTGAGGGATGGCTTACT 58.981 43.478 0.00 0.00 0.00 2.24
660 670 4.019174 ACAAATTGAGGGATGGCTTACTG 58.981 43.478 0.00 0.00 0.00 2.74
661 671 3.303351 AATTGAGGGATGGCTTACTGG 57.697 47.619 0.00 0.00 0.00 4.00
689 699 6.558909 ACTCTTTTTCTTTGAGACAAGCTTG 58.441 36.000 24.84 24.84 0.00 4.01
714 724 6.636850 GCTGTCTTGCTTCTTTTTCGATAAAA 59.363 34.615 2.68 4.43 32.75 1.52
766 776 7.362747 GCTTACTGTCTTACTACTTGCTCCTAA 60.363 40.741 0.00 0.00 0.00 2.69
767 777 8.591114 TTACTGTCTTACTACTTGCTCCTAAT 57.409 34.615 0.00 0.00 0.00 1.73
768 778 7.102847 ACTGTCTTACTACTTGCTCCTAATC 57.897 40.000 0.00 0.00 0.00 1.75
769 779 6.893005 ACTGTCTTACTACTTGCTCCTAATCT 59.107 38.462 0.00 0.00 0.00 2.40
770 780 7.067737 ACTGTCTTACTACTTGCTCCTAATCTC 59.932 40.741 0.00 0.00 0.00 2.75
771 781 6.321690 TGTCTTACTACTTGCTCCTAATCTCC 59.678 42.308 0.00 0.00 0.00 3.71
772 782 6.548251 GTCTTACTACTTGCTCCTAATCTCCT 59.452 42.308 0.00 0.00 0.00 3.69
773 783 7.720515 GTCTTACTACTTGCTCCTAATCTCCTA 59.279 40.741 0.00 0.00 0.00 2.94
830 840 1.893808 CACTGTGAAAGGCCAGCGT 60.894 57.895 5.01 0.00 31.76 5.07
905 917 0.610174 ACGGAGAGCTTGCAAGATCA 59.390 50.000 37.79 0.64 43.60 2.92
998 1023 1.478105 GGGGAAGAAACCAAACCTCGT 60.478 52.381 0.00 0.00 0.00 4.18
1155 1190 1.274728 ACAGAGTTCTTGCTCGCTCAT 59.725 47.619 0.00 0.00 40.26 2.90
1176 1211 5.181245 TCATGATTACTGACGATGCTCGATA 59.819 40.000 11.64 1.16 43.74 2.92
1177 1212 5.629079 TGATTACTGACGATGCTCGATAT 57.371 39.130 11.64 0.00 43.74 1.63
1182 1219 3.066760 ACTGACGATGCTCGATATGAACA 59.933 43.478 11.64 0.00 43.74 3.18
1210 1247 2.627221 GCTCCTAGATCTGATGCAGTCA 59.373 50.000 5.18 0.00 32.61 3.41
1249 1286 1.135315 GCCGCTTTTCTCAATGCATCA 60.135 47.619 0.00 0.00 33.55 3.07
1296 1335 5.920193 TTCTTTTGATGCTAAATCCCCAG 57.080 39.130 0.00 0.00 0.00 4.45
1350 1390 3.443045 GCAATGTCAGGTGCCGGG 61.443 66.667 2.18 0.00 34.58 5.73
1420 1462 2.333417 GGAGTCGCTGACCACGAGA 61.333 63.158 0.00 0.00 40.80 4.04
1438 1480 2.456287 GAACCCTGCACTCGGAGCTT 62.456 60.000 4.58 0.00 0.00 3.74
1473 1515 1.244019 GGCTCGAAGCATGTGGGTTT 61.244 55.000 8.71 0.00 44.75 3.27
1480 1522 3.617531 CGAAGCATGTGGGTTTCTCTAGT 60.618 47.826 0.00 0.00 37.33 2.57
1488 1530 7.335924 GCATGTGGGTTTCTCTAGTTGTTATTA 59.664 37.037 0.00 0.00 0.00 0.98
1565 1881 9.874215 CATTACATGATGATGACATTGTTCTAC 57.126 33.333 0.00 0.00 36.82 2.59
1569 1885 5.803552 TGATGATGACATTGTTCTACCACA 58.196 37.500 0.00 0.00 36.82 4.17
1575 1891 4.036262 TGACATTGTTCTACCACAGTTTGC 59.964 41.667 0.00 0.00 0.00 3.68
1593 1909 1.405105 TGCTGACAGTTTGCTTGGTTC 59.595 47.619 3.99 0.00 0.00 3.62
1598 1914 2.423538 GACAGTTTGCTTGGTTCTGTGT 59.576 45.455 0.00 0.00 39.08 3.72
2168 2663 8.839310 TTCAAAAGGAACAGTTTGAAATGAAA 57.161 26.923 8.65 0.00 45.14 2.69
2169 2664 8.477984 TCAAAAGGAACAGTTTGAAATGAAAG 57.522 30.769 0.00 0.00 40.14 2.62
2170 2665 8.093927 TCAAAAGGAACAGTTTGAAATGAAAGT 58.906 29.630 0.00 0.00 40.14 2.66
2171 2666 7.832503 AAAGGAACAGTTTGAAATGAAAGTG 57.167 32.000 0.00 0.00 40.63 3.16
2172 2667 6.530019 AGGAACAGTTTGAAATGAAAGTGT 57.470 33.333 0.00 0.00 46.71 3.55
2173 2668 6.564328 AGGAACAGTTTGAAATGAAAGTGTC 58.436 36.000 6.34 2.02 44.91 3.67
2174 2669 6.378280 AGGAACAGTTTGAAATGAAAGTGTCT 59.622 34.615 6.34 0.00 44.91 3.41
2175 2670 7.035612 GGAACAGTTTGAAATGAAAGTGTCTT 58.964 34.615 6.34 0.00 44.91 3.01
2176 2671 7.220875 GGAACAGTTTGAAATGAAAGTGTCTTC 59.779 37.037 6.34 2.63 44.91 2.87
2177 2672 7.396540 ACAGTTTGAAATGAAAGTGTCTTCT 57.603 32.000 0.00 0.00 43.08 2.85
2178 2673 7.830739 ACAGTTTGAAATGAAAGTGTCTTCTT 58.169 30.769 0.00 0.00 43.08 2.52
2179 2674 8.956426 ACAGTTTGAAATGAAAGTGTCTTCTTA 58.044 29.630 0.00 0.00 43.08 2.10
2180 2675 9.956720 CAGTTTGAAATGAAAGTGTCTTCTTAT 57.043 29.630 0.00 0.00 33.36 1.73
2225 2720 8.102484 ACCAAAATCACCTATCCTAGTAATGT 57.898 34.615 0.00 0.00 0.00 2.71
2226 2721 7.993183 ACCAAAATCACCTATCCTAGTAATGTG 59.007 37.037 0.00 0.00 0.00 3.21
2227 2722 7.041098 CCAAAATCACCTATCCTAGTAATGTGC 60.041 40.741 0.00 0.00 0.00 4.57
2228 2723 6.747414 AATCACCTATCCTAGTAATGTGCA 57.253 37.500 0.00 0.00 0.00 4.57
2229 2724 6.942163 ATCACCTATCCTAGTAATGTGCAT 57.058 37.500 0.00 0.00 0.00 3.96
2230 2725 8.435931 AATCACCTATCCTAGTAATGTGCATA 57.564 34.615 0.00 0.00 0.00 3.14
2231 2726 7.468141 TCACCTATCCTAGTAATGTGCATAG 57.532 40.000 0.00 0.00 0.00 2.23
2232 2727 6.071334 TCACCTATCCTAGTAATGTGCATAGC 60.071 42.308 0.00 0.00 0.00 2.97
2233 2728 5.780282 ACCTATCCTAGTAATGTGCATAGCA 59.220 40.000 0.00 0.00 35.60 3.49
2234 2729 6.071108 ACCTATCCTAGTAATGTGCATAGCAG 60.071 42.308 0.00 0.00 40.08 4.24
2235 2730 5.815233 ATCCTAGTAATGTGCATAGCAGT 57.185 39.130 0.00 0.00 40.08 4.40
2236 2731 4.948847 TCCTAGTAATGTGCATAGCAGTG 58.051 43.478 0.00 0.00 40.08 3.66
2237 2732 4.405680 TCCTAGTAATGTGCATAGCAGTGT 59.594 41.667 0.00 0.00 40.08 3.55
2238 2733 4.509230 CCTAGTAATGTGCATAGCAGTGTG 59.491 45.833 0.00 0.00 40.08 3.82
2239 2734 3.273434 AGTAATGTGCATAGCAGTGTGG 58.727 45.455 0.00 0.00 40.08 4.17
2240 2735 2.495155 AATGTGCATAGCAGTGTGGA 57.505 45.000 0.00 0.00 40.08 4.02
2241 2736 2.495155 ATGTGCATAGCAGTGTGGAA 57.505 45.000 0.00 0.00 40.08 3.53
2242 2737 1.812235 TGTGCATAGCAGTGTGGAAG 58.188 50.000 0.00 0.00 40.08 3.46
2243 2738 1.347378 TGTGCATAGCAGTGTGGAAGA 59.653 47.619 0.00 0.00 40.08 2.87
2244 2739 2.224499 TGTGCATAGCAGTGTGGAAGAA 60.224 45.455 0.00 0.00 40.08 2.52
2245 2740 2.160417 GTGCATAGCAGTGTGGAAGAAC 59.840 50.000 0.00 0.00 40.08 3.01
2246 2741 2.038952 TGCATAGCAGTGTGGAAGAACT 59.961 45.455 0.00 0.00 33.32 3.01
2247 2742 2.417933 GCATAGCAGTGTGGAAGAACTG 59.582 50.000 0.00 0.00 45.37 3.16
2251 2746 2.245159 CAGTGTGGAAGAACTGCAGA 57.755 50.000 23.35 0.00 37.58 4.26
2252 2747 2.564771 CAGTGTGGAAGAACTGCAGAA 58.435 47.619 23.35 0.00 37.58 3.02
2253 2748 2.289002 CAGTGTGGAAGAACTGCAGAAC 59.711 50.000 23.35 13.49 37.58 3.01
2254 2749 2.092968 AGTGTGGAAGAACTGCAGAACA 60.093 45.455 23.35 9.56 0.00 3.18
2255 2750 2.880890 GTGTGGAAGAACTGCAGAACAT 59.119 45.455 23.35 6.53 0.00 2.71
2256 2751 2.880268 TGTGGAAGAACTGCAGAACATG 59.120 45.455 23.35 0.00 0.00 3.21
2267 2762 2.736144 CAGAACATGCCTGCAAACAT 57.264 45.000 0.00 0.00 0.00 2.71
2268 2763 3.034721 CAGAACATGCCTGCAAACATT 57.965 42.857 0.00 0.00 0.00 2.71
2269 2764 3.395639 CAGAACATGCCTGCAAACATTT 58.604 40.909 0.00 0.00 0.00 2.32
2270 2765 3.810941 CAGAACATGCCTGCAAACATTTT 59.189 39.130 0.00 0.00 0.00 1.82
2271 2766 4.060205 AGAACATGCCTGCAAACATTTTC 58.940 39.130 14.99 14.99 34.61 2.29
2272 2767 3.756933 ACATGCCTGCAAACATTTTCT 57.243 38.095 0.00 0.00 0.00 2.52
2273 2768 3.395639 ACATGCCTGCAAACATTTTCTG 58.604 40.909 0.00 0.00 0.00 3.02
2274 2769 3.069872 ACATGCCTGCAAACATTTTCTGA 59.930 39.130 0.00 0.00 0.00 3.27
2275 2770 3.815856 TGCCTGCAAACATTTTCTGAA 57.184 38.095 0.00 0.00 0.00 3.02
2276 2771 3.719924 TGCCTGCAAACATTTTCTGAAG 58.280 40.909 0.00 0.00 0.00 3.02
2277 2772 3.384146 TGCCTGCAAACATTTTCTGAAGA 59.616 39.130 0.00 0.00 0.00 2.87
2278 2773 4.141981 TGCCTGCAAACATTTTCTGAAGAA 60.142 37.500 0.00 0.00 0.00 2.52
2279 2774 4.209911 GCCTGCAAACATTTTCTGAAGAAC 59.790 41.667 0.00 0.00 33.13 3.01
2280 2775 5.594926 CCTGCAAACATTTTCTGAAGAACT 58.405 37.500 0.00 0.00 33.13 3.01
2281 2776 5.461078 CCTGCAAACATTTTCTGAAGAACTG 59.539 40.000 0.00 0.00 33.13 3.16
2282 2777 6.206395 TGCAAACATTTTCTGAAGAACTGA 57.794 33.333 8.19 0.00 33.13 3.41
2283 2778 6.808829 TGCAAACATTTTCTGAAGAACTGAT 58.191 32.000 8.19 0.00 33.13 2.90
2284 2779 6.698329 TGCAAACATTTTCTGAAGAACTGATG 59.302 34.615 8.19 8.05 33.13 3.07
2285 2780 6.145048 GCAAACATTTTCTGAAGAACTGATGG 59.855 38.462 8.19 0.00 33.13 3.51
2286 2781 5.972107 ACATTTTCTGAAGAACTGATGGG 57.028 39.130 8.19 0.00 33.13 4.00
2287 2782 4.768968 ACATTTTCTGAAGAACTGATGGGG 59.231 41.667 8.19 0.00 33.13 4.96
2288 2783 2.496899 TTCTGAAGAACTGATGGGGC 57.503 50.000 0.00 0.00 0.00 5.80
2289 2784 1.661463 TCTGAAGAACTGATGGGGCT 58.339 50.000 0.00 0.00 0.00 5.19
2290 2785 1.556911 TCTGAAGAACTGATGGGGCTC 59.443 52.381 0.00 0.00 0.00 4.70
2291 2786 1.280133 CTGAAGAACTGATGGGGCTCA 59.720 52.381 0.00 0.00 0.00 4.26
2292 2787 1.918262 TGAAGAACTGATGGGGCTCAT 59.082 47.619 0.00 0.00 39.13 2.90
2293 2788 8.981659 TTTCTGAAGAACTGATGGGGCTCATC 62.982 46.154 20.60 20.60 41.86 2.92
2298 2793 4.328208 GATGGGGCTCATCTCCCT 57.672 61.111 20.15 0.00 46.59 4.20
2299 2794 2.065483 GATGGGGCTCATCTCCCTC 58.935 63.158 20.15 0.00 46.59 4.30
2300 2795 0.473501 GATGGGGCTCATCTCCCTCT 60.474 60.000 20.15 0.00 46.59 3.69
2301 2796 0.473501 ATGGGGCTCATCTCCCTCTC 60.474 60.000 0.00 0.00 43.51 3.20
2302 2797 1.841103 GGGGCTCATCTCCCTCTCC 60.841 68.421 0.00 0.00 43.41 3.71
2303 2798 1.235696 GGGCTCATCTCCCTCTCCT 59.764 63.158 0.00 0.00 40.66 3.69
2304 2799 1.120795 GGGCTCATCTCCCTCTCCTG 61.121 65.000 0.00 0.00 40.66 3.86
2305 2800 1.747774 GCTCATCTCCCTCTCCTGC 59.252 63.158 0.00 0.00 0.00 4.85
2306 2801 0.760189 GCTCATCTCCCTCTCCTGCT 60.760 60.000 0.00 0.00 0.00 4.24
2307 2802 1.331214 CTCATCTCCCTCTCCTGCTC 58.669 60.000 0.00 0.00 0.00 4.26
2308 2803 0.633378 TCATCTCCCTCTCCTGCTCA 59.367 55.000 0.00 0.00 0.00 4.26
2309 2804 1.007600 TCATCTCCCTCTCCTGCTCAA 59.992 52.381 0.00 0.00 0.00 3.02
2310 2805 2.048601 CATCTCCCTCTCCTGCTCAAT 58.951 52.381 0.00 0.00 0.00 2.57
2311 2806 1.493861 TCTCCCTCTCCTGCTCAATG 58.506 55.000 0.00 0.00 0.00 2.82
2312 2807 0.179051 CTCCCTCTCCTGCTCAATGC 60.179 60.000 0.00 0.00 43.25 3.56
2322 2817 3.547567 GCTCAATGCAGACCACTCT 57.452 52.632 0.00 0.00 42.31 3.24
2323 2818 2.680312 GCTCAATGCAGACCACTCTA 57.320 50.000 0.00 0.00 42.31 2.43
2324 2819 2.548875 GCTCAATGCAGACCACTCTAG 58.451 52.381 0.00 0.00 42.31 2.43
2325 2820 2.093764 GCTCAATGCAGACCACTCTAGT 60.094 50.000 0.00 0.00 42.31 2.57
2326 2821 3.519579 CTCAATGCAGACCACTCTAGTG 58.480 50.000 3.02 3.02 45.23 2.74
2327 2822 2.899900 TCAATGCAGACCACTCTAGTGT 59.100 45.455 9.17 0.00 44.21 3.55
2328 2823 3.324846 TCAATGCAGACCACTCTAGTGTT 59.675 43.478 9.17 0.00 44.21 3.32
2329 2824 4.526650 TCAATGCAGACCACTCTAGTGTTA 59.473 41.667 9.17 0.00 44.21 2.41
2330 2825 4.727507 ATGCAGACCACTCTAGTGTTAG 57.272 45.455 9.17 0.00 44.21 2.34
2331 2826 3.497332 TGCAGACCACTCTAGTGTTAGT 58.503 45.455 9.17 0.35 44.21 2.24
2332 2827 4.659115 TGCAGACCACTCTAGTGTTAGTA 58.341 43.478 9.17 0.00 44.21 1.82
2333 2828 4.458295 TGCAGACCACTCTAGTGTTAGTAC 59.542 45.833 9.17 0.00 44.21 2.73
2334 2829 4.701171 GCAGACCACTCTAGTGTTAGTACT 59.299 45.833 9.17 0.00 44.21 2.73
2335 2830 5.163733 GCAGACCACTCTAGTGTTAGTACTC 60.164 48.000 0.00 0.00 44.21 2.59
2336 2831 6.174760 CAGACCACTCTAGTGTTAGTACTCT 58.825 44.000 0.00 0.00 44.21 3.24
2337 2832 7.329499 CAGACCACTCTAGTGTTAGTACTCTA 58.671 42.308 0.00 0.00 44.21 2.43
2338 2833 7.823310 CAGACCACTCTAGTGTTAGTACTCTAA 59.177 40.741 0.00 0.00 44.21 2.10
2339 2834 8.042515 AGACCACTCTAGTGTTAGTACTCTAAG 58.957 40.741 0.00 0.00 44.21 2.18
2340 2835 7.688343 ACCACTCTAGTGTTAGTACTCTAAGT 58.312 38.462 0.00 0.00 44.21 2.24
2341 2836 8.820831 ACCACTCTAGTGTTAGTACTCTAAGTA 58.179 37.037 0.00 0.00 44.21 2.24
2342 2837 9.835389 CCACTCTAGTGTTAGTACTCTAAGTAT 57.165 37.037 0.00 0.00 44.21 2.12
2344 2839 9.835389 ACTCTAGTGTTAGTACTCTAAGTATGG 57.165 37.037 0.00 0.00 36.90 2.74
2345 2840 9.275398 CTCTAGTGTTAGTACTCTAAGTATGGG 57.725 40.741 0.00 0.00 36.90 4.00
2346 2841 8.216423 TCTAGTGTTAGTACTCTAAGTATGGGG 58.784 40.741 0.00 0.00 36.90 4.96
2347 2842 5.597594 AGTGTTAGTACTCTAAGTATGGGGC 59.402 44.000 0.00 0.00 36.90 5.80
2348 2843 4.897670 TGTTAGTACTCTAAGTATGGGGCC 59.102 45.833 0.00 0.00 36.90 5.80
2349 2844 3.995691 AGTACTCTAAGTATGGGGCCT 57.004 47.619 0.84 0.00 32.65 5.19
2350 2845 4.282292 AGTACTCTAAGTATGGGGCCTT 57.718 45.455 0.84 0.00 32.65 4.35
2351 2846 3.967987 AGTACTCTAAGTATGGGGCCTTG 59.032 47.826 0.84 0.00 32.65 3.61
2352 2847 3.130734 ACTCTAAGTATGGGGCCTTGA 57.869 47.619 0.84 0.00 0.00 3.02
2353 2848 3.041946 ACTCTAAGTATGGGGCCTTGAG 58.958 50.000 0.84 0.54 0.00 3.02
2354 2849 3.041946 CTCTAAGTATGGGGCCTTGAGT 58.958 50.000 0.84 0.00 0.00 3.41
2355 2850 3.456277 CTCTAAGTATGGGGCCTTGAGTT 59.544 47.826 0.84 0.43 0.00 3.01
2356 2851 4.627015 TCTAAGTATGGGGCCTTGAGTTA 58.373 43.478 0.84 1.65 0.00 2.24
2357 2852 5.034200 TCTAAGTATGGGGCCTTGAGTTAA 58.966 41.667 0.84 0.00 0.00 2.01
2358 2853 3.933861 AGTATGGGGCCTTGAGTTAAG 57.066 47.619 0.84 0.00 36.11 1.85
2359 2854 3.460825 AGTATGGGGCCTTGAGTTAAGA 58.539 45.455 0.84 0.00 38.76 2.10
2360 2855 3.456277 AGTATGGGGCCTTGAGTTAAGAG 59.544 47.826 0.84 0.00 38.76 2.85
2361 2856 2.038863 TGGGGCCTTGAGTTAAGAGA 57.961 50.000 0.84 0.00 38.76 3.10
2362 2857 2.562296 TGGGGCCTTGAGTTAAGAGAT 58.438 47.619 0.84 0.00 38.76 2.75
2363 2858 2.919602 TGGGGCCTTGAGTTAAGAGATT 59.080 45.455 0.84 0.00 38.76 2.40
2364 2859 3.054361 TGGGGCCTTGAGTTAAGAGATTC 60.054 47.826 0.84 0.00 38.76 2.52
2365 2860 3.201045 GGGGCCTTGAGTTAAGAGATTCT 59.799 47.826 0.84 0.00 38.76 2.40
2366 2861 4.324641 GGGGCCTTGAGTTAAGAGATTCTT 60.325 45.833 0.84 0.00 40.35 2.52
2367 2862 4.637977 GGGCCTTGAGTTAAGAGATTCTTG 59.362 45.833 0.84 0.00 37.29 3.02
2368 2863 5.249420 GGCCTTGAGTTAAGAGATTCTTGT 58.751 41.667 0.00 0.00 37.29 3.16
2369 2864 6.407202 GGCCTTGAGTTAAGAGATTCTTGTA 58.593 40.000 0.00 0.00 37.29 2.41
2370 2865 6.879458 GGCCTTGAGTTAAGAGATTCTTGTAA 59.121 38.462 0.00 0.00 37.29 2.41
2371 2866 7.554476 GGCCTTGAGTTAAGAGATTCTTGTAAT 59.446 37.037 0.00 0.00 37.29 1.89
2372 2867 8.951243 GCCTTGAGTTAAGAGATTCTTGTAATT 58.049 33.333 0.00 0.00 37.29 1.40
2417 2912 9.607285 AGTAAATAACTTGAAGCGTTTTATGTG 57.393 29.630 0.00 0.00 33.35 3.21
2418 2913 6.927933 AATAACTTGAAGCGTTTTATGTGC 57.072 33.333 0.00 0.00 0.00 4.57
2419 2914 2.916111 ACTTGAAGCGTTTTATGTGCG 58.084 42.857 0.00 0.00 0.00 5.34
2423 2918 3.748856 GCGTTTTATGTGCGCCAC 58.251 55.556 4.18 3.72 44.67 5.01
2431 2926 2.112928 TGTGCGCCACAATCTGGT 59.887 55.556 4.18 0.00 41.69 4.00
2432 2927 1.528076 TGTGCGCCACAATCTGGTT 60.528 52.632 4.18 0.00 41.69 3.67
2433 2928 1.210155 GTGCGCCACAATCTGGTTC 59.790 57.895 4.18 0.00 42.99 3.62
2434 2929 1.971167 TGCGCCACAATCTGGTTCC 60.971 57.895 4.18 0.00 42.99 3.62
2435 2930 1.675641 GCGCCACAATCTGGTTCCT 60.676 57.895 0.00 0.00 42.99 3.36
2436 2931 1.926511 GCGCCACAATCTGGTTCCTG 61.927 60.000 0.00 0.00 42.99 3.86
2437 2932 0.606401 CGCCACAATCTGGTTCCTGT 60.606 55.000 0.00 0.00 42.99 4.00
2438 2933 1.620822 GCCACAATCTGGTTCCTGTT 58.379 50.000 0.00 0.00 42.99 3.16
2439 2934 2.790433 GCCACAATCTGGTTCCTGTTA 58.210 47.619 0.00 0.00 42.99 2.41
2440 2935 2.488153 GCCACAATCTGGTTCCTGTTAC 59.512 50.000 0.00 0.00 42.99 2.50
2441 2936 3.081804 CCACAATCTGGTTCCTGTTACC 58.918 50.000 0.00 0.00 34.90 2.85
2442 2937 3.497763 CCACAATCTGGTTCCTGTTACCA 60.498 47.826 0.00 0.00 43.20 3.25
2443 2938 4.141287 CACAATCTGGTTCCTGTTACCAA 58.859 43.478 0.00 0.00 44.63 3.67
2444 2939 4.766891 CACAATCTGGTTCCTGTTACCAAT 59.233 41.667 0.00 0.00 44.63 3.16
2445 2940 5.243730 CACAATCTGGTTCCTGTTACCAATT 59.756 40.000 0.00 0.00 44.63 2.32
2446 2941 6.432783 CACAATCTGGTTCCTGTTACCAATTA 59.567 38.462 0.00 0.00 44.63 1.40
2447 2942 7.122650 CACAATCTGGTTCCTGTTACCAATTAT 59.877 37.037 0.00 0.00 44.63 1.28
2448 2943 7.673926 ACAATCTGGTTCCTGTTACCAATTATT 59.326 33.333 0.00 0.00 44.63 1.40
2449 2944 7.645058 ATCTGGTTCCTGTTACCAATTATTG 57.355 36.000 0.00 0.00 44.63 1.90
2522 3017 9.713684 ATCTTTGATTCCATATCTGGGTAAAAA 57.286 29.630 0.00 0.00 43.34 1.94
2523 3018 9.189156 TCTTTGATTCCATATCTGGGTAAAAAG 57.811 33.333 0.00 4.26 43.34 2.27
2524 3019 9.189156 CTTTGATTCCATATCTGGGTAAAAAGA 57.811 33.333 0.00 0.00 43.34 2.52
2525 3020 9.540538 TTTGATTCCATATCTGGGTAAAAAGAA 57.459 29.630 0.00 0.00 43.34 2.52
2526 3021 9.540538 TTGATTCCATATCTGGGTAAAAAGAAA 57.459 29.630 0.00 0.00 43.34 2.52
2527 3022 9.713684 TGATTCCATATCTGGGTAAAAAGAAAT 57.286 29.630 0.00 0.00 43.34 2.17
2530 3025 8.893563 TCCATATCTGGGTAAAAAGAAATTGT 57.106 30.769 0.00 0.00 43.34 2.71
2531 3026 8.748412 TCCATATCTGGGTAAAAAGAAATTGTG 58.252 33.333 0.00 0.00 43.34 3.33
2532 3027 7.981225 CCATATCTGGGTAAAAAGAAATTGTGG 59.019 37.037 0.00 0.00 39.04 4.17
2533 3028 5.799827 TCTGGGTAAAAAGAAATTGTGGG 57.200 39.130 0.00 0.00 0.00 4.61
2534 3029 4.591072 TCTGGGTAAAAAGAAATTGTGGGG 59.409 41.667 0.00 0.00 0.00 4.96
2535 3030 3.071747 TGGGTAAAAAGAAATTGTGGGGC 59.928 43.478 0.00 0.00 0.00 5.80
2536 3031 3.558321 GGGTAAAAAGAAATTGTGGGGCC 60.558 47.826 0.00 0.00 0.00 5.80
2537 3032 3.071747 GGTAAAAAGAAATTGTGGGGCCA 59.928 43.478 4.39 0.00 0.00 5.36
2538 3033 3.941704 AAAAAGAAATTGTGGGGCCAA 57.058 38.095 4.39 0.00 0.00 4.52
2539 3034 4.451891 AAAAAGAAATTGTGGGGCCAAT 57.548 36.364 4.39 0.00 36.62 3.16
2540 3035 3.421919 AAAGAAATTGTGGGGCCAATG 57.578 42.857 4.39 0.00 35.30 2.82
2541 3036 1.278537 AGAAATTGTGGGGCCAATGG 58.721 50.000 4.39 0.00 35.30 3.16
2542 3037 0.252761 GAAATTGTGGGGCCAATGGG 59.747 55.000 4.39 0.00 35.30 4.00
2553 3048 3.416253 CCAATGGGCCATCTCTGAG 57.584 57.895 21.48 5.25 0.00 3.35
2554 3049 0.549950 CCAATGGGCCATCTCTGAGT 59.450 55.000 21.48 0.00 0.00 3.41
2555 3050 1.064166 CCAATGGGCCATCTCTGAGTT 60.064 52.381 21.48 0.00 0.00 3.01
2556 3051 2.173356 CCAATGGGCCATCTCTGAGTTA 59.827 50.000 21.48 0.00 0.00 2.24
2557 3052 3.209410 CAATGGGCCATCTCTGAGTTAC 58.791 50.000 21.48 0.00 0.00 2.50
2558 3053 2.254152 TGGGCCATCTCTGAGTTACT 57.746 50.000 0.00 0.00 0.00 2.24
2559 3054 3.398318 TGGGCCATCTCTGAGTTACTA 57.602 47.619 0.00 0.00 0.00 1.82
2560 3055 3.031736 TGGGCCATCTCTGAGTTACTAC 58.968 50.000 0.00 0.00 0.00 2.73
2561 3056 3.031736 GGGCCATCTCTGAGTTACTACA 58.968 50.000 4.39 0.00 0.00 2.74
2562 3057 3.451178 GGGCCATCTCTGAGTTACTACAA 59.549 47.826 4.39 0.00 0.00 2.41
2563 3058 4.081087 GGGCCATCTCTGAGTTACTACAAA 60.081 45.833 4.39 0.00 0.00 2.83
2564 3059 5.488341 GGCCATCTCTGAGTTACTACAAAA 58.512 41.667 0.00 0.00 0.00 2.44
2565 3060 5.351740 GGCCATCTCTGAGTTACTACAAAAC 59.648 44.000 0.00 0.00 0.00 2.43
2566 3061 5.932303 GCCATCTCTGAGTTACTACAAAACA 59.068 40.000 4.32 0.00 0.00 2.83
2567 3062 6.595716 GCCATCTCTGAGTTACTACAAAACAT 59.404 38.462 4.32 0.00 0.00 2.71
2568 3063 7.413438 GCCATCTCTGAGTTACTACAAAACATG 60.413 40.741 4.32 0.00 0.00 3.21
2569 3064 7.819415 CCATCTCTGAGTTACTACAAAACATGA 59.181 37.037 0.00 0.00 0.00 3.07
2570 3065 9.208022 CATCTCTGAGTTACTACAAAACATGAA 57.792 33.333 0.00 0.00 0.00 2.57
2571 3066 8.818141 TCTCTGAGTTACTACAAAACATGAAG 57.182 34.615 0.00 0.00 0.00 3.02
2572 3067 8.421784 TCTCTGAGTTACTACAAAACATGAAGT 58.578 33.333 0.00 0.00 0.00 3.01
2573 3068 8.958119 TCTGAGTTACTACAAAACATGAAGTT 57.042 30.769 0.00 0.00 43.89 2.66
2574 3069 9.042008 TCTGAGTTACTACAAAACATGAAGTTC 57.958 33.333 0.00 0.00 40.26 3.01
2575 3070 8.725405 TGAGTTACTACAAAACATGAAGTTCA 57.275 30.769 8.27 8.27 40.26 3.18
2576 3071 9.168451 TGAGTTACTACAAAACATGAAGTTCAA 57.832 29.630 10.14 0.00 40.26 2.69
2577 3072 9.997482 GAGTTACTACAAAACATGAAGTTCAAA 57.003 29.630 10.14 0.00 40.26 2.69
2580 3075 9.796120 TTACTACAAAACATGAAGTTCAAAAGG 57.204 29.630 10.14 2.91 40.26 3.11
2581 3076 8.062065 ACTACAAAACATGAAGTTCAAAAGGA 57.938 30.769 10.14 0.00 40.26 3.36
2582 3077 8.527810 ACTACAAAACATGAAGTTCAAAAGGAA 58.472 29.630 10.14 0.00 40.26 3.36
2715 3797 7.358352 GCAAACATTTTCTGAAGAACCAATACG 60.358 37.037 0.00 0.00 33.13 3.06
2827 3909 6.341316 CAGTGTTACTGTATATGGTGCTCTT 58.659 40.000 0.90 0.00 41.19 2.85
2850 3932 9.393249 TCTTGAAATAAAATGTTACTTTCAGCG 57.607 29.630 10.50 8.13 37.20 5.18
2858 3940 0.887387 TTACTTTCAGCGTGCACCCC 60.887 55.000 12.15 2.30 0.00 4.95
3160 4257 8.806146 AGCAATACAAAATAACTCCACAAGAAT 58.194 29.630 0.00 0.00 0.00 2.40
3233 4330 2.370849 ACGCCCTCTGAGGTCTTAAAAA 59.629 45.455 21.70 0.00 31.93 1.94
3252 4349 1.811266 CGATGGCCAGGACGTTCTG 60.811 63.158 17.51 17.51 34.70 3.02
3267 4364 0.107752 TTCTGCAGCTGTGTGTGTCA 60.108 50.000 16.64 1.46 0.00 3.58
3282 4379 4.578516 TGTGTGTCAAATTCTTTGGACGAT 59.421 37.500 0.00 0.00 40.98 3.73
3310 4407 4.148825 GCCGCACCTCCTGTCGAT 62.149 66.667 0.00 0.00 0.00 3.59
3312 4409 2.202797 CGCACCTCCTGTCGATGG 60.203 66.667 0.00 0.00 0.00 3.51
3313 4410 2.982130 GCACCTCCTGTCGATGGT 59.018 61.111 7.20 0.41 0.00 3.55
3314 4411 1.153549 GCACCTCCTGTCGATGGTC 60.154 63.158 7.20 0.00 0.00 4.02
3315 4412 1.888436 GCACCTCCTGTCGATGGTCA 61.888 60.000 7.20 0.00 0.00 4.02
3316 4413 0.608130 CACCTCCTGTCGATGGTCAA 59.392 55.000 7.20 0.00 0.00 3.18
3317 4414 0.608640 ACCTCCTGTCGATGGTCAAC 59.391 55.000 7.20 0.00 0.00 3.18
3318 4415 0.608130 CCTCCTGTCGATGGTCAACA 59.392 55.000 7.20 0.00 0.00 3.33
3319 4416 1.404717 CCTCCTGTCGATGGTCAACAG 60.405 57.143 7.20 0.00 40.05 3.16
3320 4417 1.273606 CTCCTGTCGATGGTCAACAGT 59.726 52.381 7.20 0.00 38.97 3.55
3321 4418 1.000843 TCCTGTCGATGGTCAACAGTG 59.999 52.381 7.20 0.00 38.97 3.66
3322 4419 1.432514 CTGTCGATGGTCAACAGTGG 58.567 55.000 0.00 0.00 36.50 4.00
3323 4420 0.602638 TGTCGATGGTCAACAGTGGC 60.603 55.000 0.00 0.00 0.00 5.01
3324 4421 1.374125 TCGATGGTCAACAGTGGCG 60.374 57.895 0.00 0.00 0.00 5.69
3325 4422 1.667830 CGATGGTCAACAGTGGCGT 60.668 57.895 0.00 0.00 0.00 5.68
3326 4423 0.389296 CGATGGTCAACAGTGGCGTA 60.389 55.000 0.00 0.00 0.00 4.42
3327 4424 1.739035 CGATGGTCAACAGTGGCGTAT 60.739 52.381 0.00 0.00 0.00 3.06
3328 4425 1.933853 GATGGTCAACAGTGGCGTATC 59.066 52.381 0.00 0.00 0.00 2.24
3329 4426 0.973632 TGGTCAACAGTGGCGTATCT 59.026 50.000 0.00 0.00 0.00 1.98
3330 4427 2.172679 TGGTCAACAGTGGCGTATCTA 58.827 47.619 0.00 0.00 0.00 1.98
3331 4428 2.165641 TGGTCAACAGTGGCGTATCTAG 59.834 50.000 0.00 0.00 0.00 2.43
3332 4429 2.481449 GGTCAACAGTGGCGTATCTAGG 60.481 54.545 0.00 0.00 0.00 3.02
3333 4430 1.754803 TCAACAGTGGCGTATCTAGGG 59.245 52.381 0.00 0.00 0.00 3.53
3334 4431 1.120530 AACAGTGGCGTATCTAGGGG 58.879 55.000 0.00 0.00 0.00 4.79
3335 4432 0.759436 ACAGTGGCGTATCTAGGGGG 60.759 60.000 0.00 0.00 0.00 5.40
3336 4433 0.759436 CAGTGGCGTATCTAGGGGGT 60.759 60.000 0.00 0.00 0.00 4.95
3337 4434 0.759436 AGTGGCGTATCTAGGGGGTG 60.759 60.000 0.00 0.00 0.00 4.61
3338 4435 1.458777 TGGCGTATCTAGGGGGTGG 60.459 63.158 0.00 0.00 0.00 4.61
3339 4436 1.152398 GGCGTATCTAGGGGGTGGA 60.152 63.158 0.00 0.00 0.00 4.02
3340 4437 1.470165 GGCGTATCTAGGGGGTGGAC 61.470 65.000 0.00 0.00 0.00 4.02
3341 4438 0.757935 GCGTATCTAGGGGGTGGACA 60.758 60.000 0.00 0.00 0.00 4.02
3342 4439 1.329256 CGTATCTAGGGGGTGGACAG 58.671 60.000 0.00 0.00 0.00 3.51
3343 4440 1.718280 GTATCTAGGGGGTGGACAGG 58.282 60.000 0.00 0.00 0.00 4.00
3344 4441 0.566176 TATCTAGGGGGTGGACAGGG 59.434 60.000 0.00 0.00 0.00 4.45
3345 4442 1.537478 ATCTAGGGGGTGGACAGGGT 61.537 60.000 0.00 0.00 0.00 4.34
3346 4443 1.995626 CTAGGGGGTGGACAGGGTG 60.996 68.421 0.00 0.00 0.00 4.61
3347 4444 3.572715 TAGGGGGTGGACAGGGTGG 62.573 68.421 0.00 0.00 0.00 4.61
3349 4446 3.647771 GGGGTGGACAGGGTGGTC 61.648 72.222 0.00 0.00 37.06 4.02
3369 4466 2.236489 CATGGACCACCCTGGAATTT 57.764 50.000 0.00 0.00 40.96 1.82
3370 4467 2.102578 CATGGACCACCCTGGAATTTC 58.897 52.381 0.00 0.00 40.96 2.17
3371 4468 0.407918 TGGACCACCCTGGAATTTCC 59.592 55.000 8.59 8.59 40.96 3.13
3372 4469 0.324368 GGACCACCCTGGAATTTCCC 60.324 60.000 12.90 0.00 40.96 3.97
3373 4470 0.324368 GACCACCCTGGAATTTCCCC 60.324 60.000 12.90 0.00 40.96 4.81
3374 4471 1.077298 ACCACCCTGGAATTTCCCCA 61.077 55.000 12.90 0.00 40.96 4.96
3375 4472 0.339510 CCACCCTGGAATTTCCCCAT 59.660 55.000 12.90 0.00 40.96 4.00
3376 4473 1.573376 CCACCCTGGAATTTCCCCATA 59.427 52.381 12.90 0.00 40.96 2.74
3377 4474 2.023501 CCACCCTGGAATTTCCCCATAA 60.024 50.000 12.90 0.00 40.96 1.90
3378 4475 3.375207 CCACCCTGGAATTTCCCCATAAT 60.375 47.826 12.90 0.00 40.96 1.28
3379 4476 4.140805 CCACCCTGGAATTTCCCCATAATA 60.141 45.833 12.90 0.00 40.96 0.98
3380 4477 5.461018 CCACCCTGGAATTTCCCCATAATAT 60.461 44.000 12.90 0.00 40.96 1.28
3381 4478 6.240733 CCACCCTGGAATTTCCCCATAATATA 60.241 42.308 12.90 0.00 40.96 0.86
3382 4479 7.421684 CACCCTGGAATTTCCCCATAATATAT 58.578 38.462 12.90 0.00 35.03 0.86
3383 4480 8.565239 CACCCTGGAATTTCCCCATAATATATA 58.435 37.037 12.90 0.00 35.03 0.86
3384 4481 9.321500 ACCCTGGAATTTCCCCATAATATATAT 57.678 33.333 12.90 0.00 35.03 0.86
3449 4546 8.489990 TTTATGTGAATATTTTGCATTGGTGG 57.510 30.769 0.00 0.00 0.00 4.61
3450 4547 5.735285 TGTGAATATTTTGCATTGGTGGA 57.265 34.783 0.00 0.00 0.00 4.02
3451 4548 5.477510 TGTGAATATTTTGCATTGGTGGAC 58.522 37.500 0.00 0.00 0.00 4.02
3452 4549 4.869861 GTGAATATTTTGCATTGGTGGACC 59.130 41.667 0.00 0.00 0.00 4.46
3453 4550 4.529769 TGAATATTTTGCATTGGTGGACCA 59.470 37.500 0.00 0.00 45.94 4.02
3463 4560 2.361610 GTGGACCACCCTGGCATG 60.362 66.667 14.16 0.00 42.67 4.06
3464 4561 2.858476 TGGACCACCCTGGCATGT 60.858 61.111 0.00 0.00 42.67 3.21
3465 4562 2.440599 GGACCACCCTGGCATGTT 59.559 61.111 0.00 0.00 42.67 2.71
3466 4563 1.978617 GGACCACCCTGGCATGTTG 60.979 63.158 0.00 0.00 42.67 3.33
3467 4564 1.978617 GACCACCCTGGCATGTTGG 60.979 63.158 4.83 4.83 42.67 3.77
3468 4565 2.681064 CCACCCTGGCATGTTGGG 60.681 66.667 15.17 15.17 46.07 4.12
3469 4566 3.384532 CACCCTGGCATGTTGGGC 61.385 66.667 16.24 0.00 44.56 5.36
3470 4567 3.593680 ACCCTGGCATGTTGGGCT 61.594 61.111 16.24 5.04 44.56 5.19
3471 4568 2.237965 ACCCTGGCATGTTGGGCTA 61.238 57.895 16.24 0.00 44.56 3.93
3472 4569 1.454479 CCCTGGCATGTTGGGCTAG 60.454 63.158 6.83 0.00 39.31 3.42
3473 4570 2.123428 CCTGGCATGTTGGGCTAGC 61.123 63.158 6.04 6.04 38.40 3.42
3474 4571 1.077212 CTGGCATGTTGGGCTAGCT 60.077 57.895 15.72 0.00 33.06 3.32
3475 4572 0.181114 CTGGCATGTTGGGCTAGCTA 59.819 55.000 15.72 0.96 33.06 3.32
3476 4573 0.107214 TGGCATGTTGGGCTAGCTAC 60.107 55.000 15.72 10.98 0.00 3.58
3477 4574 1.160329 GGCATGTTGGGCTAGCTACG 61.160 60.000 15.72 1.04 0.00 3.51
3478 4575 1.776034 GCATGTTGGGCTAGCTACGC 61.776 60.000 15.72 6.93 0.00 4.42
3479 4576 1.146263 ATGTTGGGCTAGCTACGCC 59.854 57.895 15.72 19.98 46.83 5.68
3517 4614 1.244019 GGCGGCAGGATGTTTCAACT 61.244 55.000 3.07 0.00 39.31 3.16
3519 4616 1.522668 CGGCAGGATGTTTCAACTCA 58.477 50.000 0.00 0.00 39.31 3.41
3540 4637 7.989826 ACTCATGAACTTAGGAATTGCATTAC 58.010 34.615 0.00 0.00 0.00 1.89
3550 4647 6.131544 AGGAATTGCATTACGGTAACATTC 57.868 37.500 2.10 8.51 0.00 2.67
3581 4679 3.920446 TGCTGTAGCGACAACTGAATAA 58.080 40.909 0.14 0.00 45.83 1.40
3603 4701 0.246360 TGTATGGTCACAGGCTCACG 59.754 55.000 0.00 0.00 0.00 4.35
3699 4887 2.223377 GGATCTGTTGTTTCGGTGACAC 59.777 50.000 0.00 0.00 0.00 3.67
3780 4972 7.372714 TGGCTTTATCATGAACATAATGATGC 58.627 34.615 0.00 4.51 43.10 3.91
3796 4988 1.961394 GATGCGGTACTACTGGGATGA 59.039 52.381 0.00 0.00 0.00 2.92
3801 4993 3.431766 GCGGTACTACTGGGATGATGTTT 60.432 47.826 0.00 0.00 0.00 2.83
3802 4994 4.119862 CGGTACTACTGGGATGATGTTTG 58.880 47.826 0.00 0.00 0.00 2.93
3804 4996 3.004752 ACTACTGGGATGATGTTTGCC 57.995 47.619 0.00 0.00 0.00 4.52
3805 4997 2.578021 ACTACTGGGATGATGTTTGCCT 59.422 45.455 0.00 0.00 0.00 4.75
3806 4998 2.134789 ACTGGGATGATGTTTGCCTC 57.865 50.000 0.00 0.00 0.00 4.70
3807 4999 1.341383 ACTGGGATGATGTTTGCCTCC 60.341 52.381 0.00 0.00 0.00 4.30
3808 5000 0.703488 TGGGATGATGTTTGCCTCCA 59.297 50.000 0.00 0.00 0.00 3.86
3809 5001 1.288633 TGGGATGATGTTTGCCTCCAT 59.711 47.619 0.00 0.00 0.00 3.41
3810 5002 1.959282 GGGATGATGTTTGCCTCCATC 59.041 52.381 0.00 0.00 38.34 3.51
3811 5003 2.423947 GGGATGATGTTTGCCTCCATCT 60.424 50.000 0.00 0.00 38.59 2.90
3812 5004 3.294214 GGATGATGTTTGCCTCCATCTT 58.706 45.455 0.00 2.70 38.59 2.40
3934 5132 0.533755 GCATCCCAAGGATCTGGTCG 60.534 60.000 0.70 0.00 40.98 4.79
3950 5148 2.670934 CGCTCACTGGCTTGGCTT 60.671 61.111 0.00 0.00 0.00 4.35
3951 5149 2.960170 GCTCACTGGCTTGGCTTG 59.040 61.111 0.00 0.00 0.00 4.01
3952 5150 2.633509 GCTCACTGGCTTGGCTTGG 61.634 63.158 0.00 0.00 0.00 3.61
3953 5151 2.598394 TCACTGGCTTGGCTTGGC 60.598 61.111 0.00 0.00 0.00 4.52
3954 5152 2.599578 CACTGGCTTGGCTTGGCT 60.600 61.111 5.64 0.00 0.00 4.75
4015 5213 2.284684 GCAACAAGATCTGATCTCTGCG 59.715 50.000 19.78 14.35 39.08 5.18
4181 5383 5.674569 GCACAACAATCATAGACCACATGAC 60.675 44.000 0.00 0.00 35.33 3.06
4187 5389 2.501316 TCATAGACCACATGACTGGGTG 59.499 50.000 0.00 0.00 35.34 4.61
4206 5408 5.045359 TGGGTGAAAATGACTCAGATCTGAT 60.045 40.000 25.30 15.28 39.13 2.90
4207 5409 5.884792 GGGTGAAAATGACTCAGATCTGATT 59.115 40.000 25.30 20.06 39.13 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 9.750125 AAAGATTGTTGATTTTCCTTCTGTTAC 57.250 29.630 0.00 0.00 0.00 2.50
162 164 5.798910 TCTCGACGTTTCTTGTTAAAAACC 58.201 37.500 0.00 0.00 32.90 3.27
278 280 4.832248 TCTTAGTGTGGATGGACATTCAC 58.168 43.478 15.26 15.26 45.45 3.18
286 288 1.743772 CGGGCTTCTTAGTGTGGATGG 60.744 57.143 0.00 0.00 0.00 3.51
304 306 6.130298 TCATGGCAACTATTATTGTTTCGG 57.870 37.500 0.00 0.00 37.61 4.30
344 346 4.996122 ACTGCTCACAAAATTCAGAGAGAG 59.004 41.667 8.15 0.00 0.00 3.20
359 361 3.194542 AGTTGACCAGAGATACTGCTCAC 59.805 47.826 0.00 0.00 44.52 3.51
363 365 3.131223 TGCTAGTTGACCAGAGATACTGC 59.869 47.826 0.00 0.00 44.52 4.40
528 537 5.916883 GCATAAACACATTCATAGGTGATGC 59.083 40.000 0.00 0.00 38.29 3.91
590 600 1.478510 TGCGTTGCAAAGGGAGAAAAA 59.521 42.857 14.31 0.00 34.76 1.94
591 601 1.107114 TGCGTTGCAAAGGGAGAAAA 58.893 45.000 14.31 0.00 34.76 2.29
592 602 0.383949 GTGCGTTGCAAAGGGAGAAA 59.616 50.000 14.31 0.00 41.47 2.52
593 603 1.781025 CGTGCGTTGCAAAGGGAGAA 61.781 55.000 14.31 0.00 41.47 2.87
594 604 2.250939 CGTGCGTTGCAAAGGGAGA 61.251 57.895 14.31 0.00 41.47 3.71
595 605 2.252260 CGTGCGTTGCAAAGGGAG 59.748 61.111 14.31 0.00 41.47 4.30
596 606 3.283684 CCGTGCGTTGCAAAGGGA 61.284 61.111 14.31 1.61 41.47 4.20
597 607 4.341502 CCCGTGCGTTGCAAAGGG 62.342 66.667 14.31 15.97 46.50 3.95
598 608 4.999939 GCCCGTGCGTTGCAAAGG 63.000 66.667 14.31 4.49 41.47 3.11
599 609 3.556543 ATGCCCGTGCGTTGCAAAG 62.557 57.895 8.11 8.11 41.47 2.77
600 610 2.635229 AAATGCCCGTGCGTTGCAAA 62.635 50.000 0.00 0.00 45.88 3.68
601 611 3.144120 AAATGCCCGTGCGTTGCAA 62.144 52.632 0.00 0.00 45.88 4.08
602 612 3.600694 AAATGCCCGTGCGTTGCA 61.601 55.556 0.00 8.11 45.88 4.08
603 613 3.105157 CAAATGCCCGTGCGTTGC 61.105 61.111 0.00 0.00 45.88 4.17
604 614 2.015627 CACAAATGCCCGTGCGTTG 61.016 57.895 0.00 1.29 45.88 4.10
659 669 6.119536 TGTCTCAAAGAAAAAGAGTAAGCCA 58.880 36.000 0.00 0.00 0.00 4.75
660 670 6.619801 TGTCTCAAAGAAAAAGAGTAAGCC 57.380 37.500 0.00 0.00 0.00 4.35
661 671 6.634837 GCTTGTCTCAAAGAAAAAGAGTAAGC 59.365 38.462 1.91 1.91 40.06 3.09
689 699 3.609103 TCGAAAAAGAAGCAAGACAGC 57.391 42.857 0.00 0.00 0.00 4.40
742 752 8.591114 ATTAGGAGCAAGTAGTAAGACAGTAA 57.409 34.615 0.00 0.00 0.00 2.24
743 753 8.053963 AGATTAGGAGCAAGTAGTAAGACAGTA 58.946 37.037 0.00 0.00 0.00 2.74
744 754 6.893005 AGATTAGGAGCAAGTAGTAAGACAGT 59.107 38.462 0.00 0.00 0.00 3.55
745 755 7.341445 AGATTAGGAGCAAGTAGTAAGACAG 57.659 40.000 0.00 0.00 0.00 3.51
746 756 6.321690 GGAGATTAGGAGCAAGTAGTAAGACA 59.678 42.308 0.00 0.00 0.00 3.41
747 757 6.548251 AGGAGATTAGGAGCAAGTAGTAAGAC 59.452 42.308 0.00 0.00 0.00 3.01
748 758 6.674573 AGGAGATTAGGAGCAAGTAGTAAGA 58.325 40.000 0.00 0.00 0.00 2.10
749 759 6.969993 AGGAGATTAGGAGCAAGTAGTAAG 57.030 41.667 0.00 0.00 0.00 2.34
750 760 8.225416 TCATAGGAGATTAGGAGCAAGTAGTAA 58.775 37.037 0.00 0.00 0.00 2.24
755 765 5.843421 ACATCATAGGAGATTAGGAGCAAGT 59.157 40.000 0.00 0.00 0.00 3.16
766 776 4.885907 CCAGCAACAAACATCATAGGAGAT 59.114 41.667 0.00 0.00 0.00 2.75
767 777 4.264253 CCAGCAACAAACATCATAGGAGA 58.736 43.478 0.00 0.00 0.00 3.71
768 778 3.379372 CCCAGCAACAAACATCATAGGAG 59.621 47.826 0.00 0.00 0.00 3.69
769 779 3.355378 CCCAGCAACAAACATCATAGGA 58.645 45.455 0.00 0.00 0.00 2.94
770 780 2.159198 GCCCAGCAACAAACATCATAGG 60.159 50.000 0.00 0.00 0.00 2.57
771 781 2.159198 GGCCCAGCAACAAACATCATAG 60.159 50.000 0.00 0.00 0.00 2.23
772 782 1.824230 GGCCCAGCAACAAACATCATA 59.176 47.619 0.00 0.00 0.00 2.15
773 783 0.609662 GGCCCAGCAACAAACATCAT 59.390 50.000 0.00 0.00 0.00 2.45
814 824 1.302033 AGACGCTGGCCTTTCACAG 60.302 57.895 3.32 0.00 37.76 3.66
830 840 1.381056 GAGGAGCAGAGGAGCCAGA 60.381 63.158 0.00 0.00 34.23 3.86
998 1023 1.280133 CCACAGGGAAGCTCTTCATGA 59.720 52.381 16.11 0.00 41.20 3.07
1176 1211 3.095262 AGGAGCTCCCTGTGTTCAT 57.905 52.632 29.54 4.11 45.61 2.57
1177 1212 4.648007 AGGAGCTCCCTGTGTTCA 57.352 55.556 29.54 0.00 45.61 3.18
1210 1247 4.722535 TCCGGCTCCAGCTTCCCT 62.723 66.667 0.00 0.00 41.70 4.20
1238 1275 3.603532 ACAGTACCAGTGATGCATTGAG 58.396 45.455 0.00 0.00 0.00 3.02
1296 1335 1.599542 GGTATCCTCAATTGCAGCGAC 59.400 52.381 0.00 0.00 0.00 5.19
1381 1423 2.264166 GACTTGGAGAGCAGCGCT 59.736 61.111 2.64 2.64 43.88 5.92
1420 1462 2.520536 AAGCTCCGAGTGCAGGGTT 61.521 57.895 0.00 0.00 0.00 4.11
1438 1480 3.636764 TCGAGCCAGAGCAATTATAGACA 59.363 43.478 0.00 0.00 43.56 3.41
1514 1592 7.094805 TGCAAGATCAAGTACATCCAAAGTAAC 60.095 37.037 0.00 0.00 0.00 2.50
1520 1598 6.883756 TGTAATGCAAGATCAAGTACATCCAA 59.116 34.615 0.00 0.00 0.00 3.53
1565 1881 2.801063 CAAACTGTCAGCAAACTGTGG 58.199 47.619 0.00 0.00 44.77 4.17
1569 1885 2.159198 CCAAGCAAACTGTCAGCAAACT 60.159 45.455 0.00 0.00 0.00 2.66
1575 1891 2.684881 ACAGAACCAAGCAAACTGTCAG 59.315 45.455 0.00 0.00 37.24 3.51
1612 1928 1.295423 GCACCGCTTTAGGGACTCA 59.705 57.895 0.00 0.00 41.75 3.41
2052 2414 7.938715 AGATATCAGTTTGCCATGAGAATTTC 58.061 34.615 5.32 0.00 0.00 2.17
2199 2694 9.220906 ACATTACTAGGATAGGTGATTTTGGTA 57.779 33.333 0.00 0.00 44.97 3.25
2200 2695 7.993183 CACATTACTAGGATAGGTGATTTTGGT 59.007 37.037 0.00 0.00 44.97 3.67
2201 2696 7.041098 GCACATTACTAGGATAGGTGATTTTGG 60.041 40.741 9.13 0.00 44.97 3.28
2202 2697 7.498900 TGCACATTACTAGGATAGGTGATTTTG 59.501 37.037 9.13 0.00 44.97 2.44
2203 2698 7.573710 TGCACATTACTAGGATAGGTGATTTT 58.426 34.615 9.13 0.00 44.97 1.82
2204 2699 7.136822 TGCACATTACTAGGATAGGTGATTT 57.863 36.000 9.13 0.00 44.97 2.17
2205 2700 6.747414 TGCACATTACTAGGATAGGTGATT 57.253 37.500 9.13 0.00 44.97 2.57
2206 2701 6.942163 ATGCACATTACTAGGATAGGTGAT 57.058 37.500 9.13 0.40 44.97 3.06
2207 2702 6.071334 GCTATGCACATTACTAGGATAGGTGA 60.071 42.308 9.13 0.00 44.97 4.02
2208 2703 6.102663 GCTATGCACATTACTAGGATAGGTG 58.897 44.000 0.00 0.00 44.97 4.00
2209 2704 5.780282 TGCTATGCACATTACTAGGATAGGT 59.220 40.000 0.00 0.00 36.89 3.08
2210 2705 6.071108 ACTGCTATGCACATTACTAGGATAGG 60.071 42.308 0.00 0.00 37.44 2.57
2211 2706 6.810676 CACTGCTATGCACATTACTAGGATAG 59.189 42.308 0.00 0.00 38.48 2.08
2212 2707 6.267699 ACACTGCTATGCACATTACTAGGATA 59.732 38.462 0.00 0.00 33.79 2.59
2213 2708 5.070981 ACACTGCTATGCACATTACTAGGAT 59.929 40.000 0.00 0.00 33.79 3.24
2214 2709 4.405680 ACACTGCTATGCACATTACTAGGA 59.594 41.667 0.00 0.00 33.79 2.94
2215 2710 4.509230 CACACTGCTATGCACATTACTAGG 59.491 45.833 0.00 0.00 33.79 3.02
2216 2711 4.509230 CCACACTGCTATGCACATTACTAG 59.491 45.833 0.00 0.00 33.79 2.57
2217 2712 4.161377 TCCACACTGCTATGCACATTACTA 59.839 41.667 0.00 0.00 33.79 1.82
2218 2713 3.055167 TCCACACTGCTATGCACATTACT 60.055 43.478 0.00 0.00 33.79 2.24
2219 2714 3.270027 TCCACACTGCTATGCACATTAC 58.730 45.455 0.00 0.00 33.79 1.89
2220 2715 3.625649 TCCACACTGCTATGCACATTA 57.374 42.857 0.00 0.00 33.79 1.90
2221 2716 2.495155 TCCACACTGCTATGCACATT 57.505 45.000 0.00 0.00 33.79 2.71
2222 2717 2.026915 TCTTCCACACTGCTATGCACAT 60.027 45.455 0.00 0.00 33.79 3.21
2223 2718 1.347378 TCTTCCACACTGCTATGCACA 59.653 47.619 0.00 0.00 33.79 4.57
2224 2719 2.099141 TCTTCCACACTGCTATGCAC 57.901 50.000 0.00 0.00 33.79 4.57
2225 2720 2.038952 AGTTCTTCCACACTGCTATGCA 59.961 45.455 0.00 0.00 36.92 3.96
2226 2721 2.417933 CAGTTCTTCCACACTGCTATGC 59.582 50.000 0.00 0.00 34.33 3.14
2232 2727 2.245159 TCTGCAGTTCTTCCACACTG 57.755 50.000 14.67 0.00 42.94 3.66
2233 2728 2.092968 TGTTCTGCAGTTCTTCCACACT 60.093 45.455 14.67 0.00 0.00 3.55
2234 2729 2.288666 TGTTCTGCAGTTCTTCCACAC 58.711 47.619 14.67 0.00 0.00 3.82
2235 2730 2.708216 TGTTCTGCAGTTCTTCCACA 57.292 45.000 14.67 3.98 0.00 4.17
2236 2731 3.549299 CATGTTCTGCAGTTCTTCCAC 57.451 47.619 14.67 1.45 0.00 4.02
2248 2743 2.736144 ATGTTTGCAGGCATGTTCTG 57.264 45.000 0.00 12.01 35.49 3.02
2249 2744 3.756933 AAATGTTTGCAGGCATGTTCT 57.243 38.095 0.00 0.00 0.00 3.01
2250 2745 4.060205 AGAAAATGTTTGCAGGCATGTTC 58.940 39.130 19.54 19.54 38.79 3.18
2251 2746 3.810941 CAGAAAATGTTTGCAGGCATGTT 59.189 39.130 0.00 7.46 0.00 2.71
2252 2747 3.069872 TCAGAAAATGTTTGCAGGCATGT 59.930 39.130 0.00 0.00 0.00 3.21
2253 2748 3.655486 TCAGAAAATGTTTGCAGGCATG 58.345 40.909 0.00 0.00 0.00 4.06
2254 2749 4.039488 TCTTCAGAAAATGTTTGCAGGCAT 59.961 37.500 0.00 0.01 0.00 4.40
2255 2750 3.384146 TCTTCAGAAAATGTTTGCAGGCA 59.616 39.130 0.00 0.00 0.00 4.75
2256 2751 3.981211 TCTTCAGAAAATGTTTGCAGGC 58.019 40.909 0.00 0.00 0.00 4.85
2257 2752 5.461078 CAGTTCTTCAGAAAATGTTTGCAGG 59.539 40.000 0.00 0.00 35.58 4.85
2258 2753 6.267817 TCAGTTCTTCAGAAAATGTTTGCAG 58.732 36.000 0.00 0.00 35.58 4.41
2259 2754 6.206395 TCAGTTCTTCAGAAAATGTTTGCA 57.794 33.333 0.00 0.00 35.58 4.08
2260 2755 6.145048 CCATCAGTTCTTCAGAAAATGTTTGC 59.855 38.462 0.00 0.00 35.58 3.68
2261 2756 6.643770 CCCATCAGTTCTTCAGAAAATGTTTG 59.356 38.462 0.00 0.00 35.58 2.93
2262 2757 6.239402 CCCCATCAGTTCTTCAGAAAATGTTT 60.239 38.462 0.00 0.00 35.58 2.83
2263 2758 5.244626 CCCCATCAGTTCTTCAGAAAATGTT 59.755 40.000 0.00 0.00 35.58 2.71
2264 2759 4.768968 CCCCATCAGTTCTTCAGAAAATGT 59.231 41.667 0.00 0.00 35.58 2.71
2265 2760 4.381292 GCCCCATCAGTTCTTCAGAAAATG 60.381 45.833 0.00 0.00 35.58 2.32
2266 2761 3.766051 GCCCCATCAGTTCTTCAGAAAAT 59.234 43.478 0.00 0.00 35.58 1.82
2267 2762 3.157087 GCCCCATCAGTTCTTCAGAAAA 58.843 45.455 0.00 0.00 35.58 2.29
2268 2763 2.376518 AGCCCCATCAGTTCTTCAGAAA 59.623 45.455 0.00 0.00 35.58 2.52
2269 2764 1.988107 AGCCCCATCAGTTCTTCAGAA 59.012 47.619 0.00 0.00 0.00 3.02
2270 2765 1.556911 GAGCCCCATCAGTTCTTCAGA 59.443 52.381 0.00 0.00 0.00 3.27
2271 2766 1.280133 TGAGCCCCATCAGTTCTTCAG 59.720 52.381 0.00 0.00 0.00 3.02
2272 2767 1.361204 TGAGCCCCATCAGTTCTTCA 58.639 50.000 0.00 0.00 0.00 3.02
2273 2768 2.725221 ATGAGCCCCATCAGTTCTTC 57.275 50.000 0.00 0.00 31.44 2.87
2285 2780 1.120795 CAGGAGAGGGAGATGAGCCC 61.121 65.000 0.00 0.00 46.40 5.19
2286 2781 1.757423 GCAGGAGAGGGAGATGAGCC 61.757 65.000 0.00 0.00 0.00 4.70
2287 2782 0.760189 AGCAGGAGAGGGAGATGAGC 60.760 60.000 0.00 0.00 0.00 4.26
2288 2783 1.331214 GAGCAGGAGAGGGAGATGAG 58.669 60.000 0.00 0.00 0.00 2.90
2289 2784 0.633378 TGAGCAGGAGAGGGAGATGA 59.367 55.000 0.00 0.00 0.00 2.92
2290 2785 1.493861 TTGAGCAGGAGAGGGAGATG 58.506 55.000 0.00 0.00 0.00 2.90
2291 2786 2.048601 CATTGAGCAGGAGAGGGAGAT 58.951 52.381 0.00 0.00 0.00 2.75
2292 2787 1.493861 CATTGAGCAGGAGAGGGAGA 58.506 55.000 0.00 0.00 0.00 3.71
2293 2788 0.179051 GCATTGAGCAGGAGAGGGAG 60.179 60.000 0.00 0.00 44.79 4.30
2294 2789 1.910722 GCATTGAGCAGGAGAGGGA 59.089 57.895 0.00 0.00 44.79 4.20
2295 2790 4.555610 GCATTGAGCAGGAGAGGG 57.444 61.111 0.00 0.00 44.79 4.30
2303 2798 6.652316 CACTAGAGTGGTCTGCATTGAGCA 62.652 50.000 3.91 3.91 46.02 4.26
2304 2799 2.093764 ACTAGAGTGGTCTGCATTGAGC 60.094 50.000 0.00 0.00 45.96 4.26
2305 2800 3.519579 CACTAGAGTGGTCTGCATTGAG 58.480 50.000 0.00 0.00 42.10 3.02
2306 2801 3.324846 AACACTAGAGTGGTCTGCATTGA 59.675 43.478 13.99 0.00 43.59 2.57
2307 2802 3.668447 AACACTAGAGTGGTCTGCATTG 58.332 45.455 13.99 0.00 43.59 2.82
2308 2803 4.528596 ACTAACACTAGAGTGGTCTGCATT 59.471 41.667 13.99 0.51 43.59 3.56
2309 2804 4.090090 ACTAACACTAGAGTGGTCTGCAT 58.910 43.478 13.99 0.00 43.59 3.96
2310 2805 3.497332 ACTAACACTAGAGTGGTCTGCA 58.503 45.455 13.99 0.00 43.59 4.41
2311 2806 4.701171 AGTACTAACACTAGAGTGGTCTGC 59.299 45.833 13.99 0.82 43.59 4.26
2312 2807 6.174760 AGAGTACTAACACTAGAGTGGTCTG 58.825 44.000 13.99 6.82 43.59 3.51
2313 2808 6.377245 AGAGTACTAACACTAGAGTGGTCT 57.623 41.667 13.99 0.79 43.59 3.85
2314 2809 7.823799 ACTTAGAGTACTAACACTAGAGTGGTC 59.176 40.741 13.99 0.00 43.59 4.02
2316 2811 9.835389 ATACTTAGAGTACTAACACTAGAGTGG 57.165 37.037 13.99 0.00 40.78 4.00
2318 2813 9.835389 CCATACTTAGAGTACTAACACTAGAGT 57.165 37.037 0.00 0.00 32.84 3.24
2319 2814 9.275398 CCCATACTTAGAGTACTAACACTAGAG 57.725 40.741 0.00 0.00 32.84 2.43
2320 2815 8.216423 CCCCATACTTAGAGTACTAACACTAGA 58.784 40.741 0.00 0.00 32.84 2.43
2321 2816 7.040548 GCCCCATACTTAGAGTACTAACACTAG 60.041 44.444 0.00 0.00 32.84 2.57
2322 2817 6.774656 GCCCCATACTTAGAGTACTAACACTA 59.225 42.308 0.00 0.00 32.84 2.74
2323 2818 5.597594 GCCCCATACTTAGAGTACTAACACT 59.402 44.000 0.00 0.00 32.84 3.55
2324 2819 5.221402 GGCCCCATACTTAGAGTACTAACAC 60.221 48.000 0.00 0.00 32.84 3.32
2325 2820 4.897670 GGCCCCATACTTAGAGTACTAACA 59.102 45.833 0.00 0.00 32.84 2.41
2326 2821 5.146298 AGGCCCCATACTTAGAGTACTAAC 58.854 45.833 0.00 0.00 32.84 2.34
2327 2822 5.414133 AGGCCCCATACTTAGAGTACTAA 57.586 43.478 0.00 0.00 32.84 2.24
2328 2823 5.103387 TCAAGGCCCCATACTTAGAGTACTA 60.103 44.000 0.00 0.00 32.84 1.82
2329 2824 3.967987 CAAGGCCCCATACTTAGAGTACT 59.032 47.826 0.00 0.00 32.84 2.73
2330 2825 3.965347 TCAAGGCCCCATACTTAGAGTAC 59.035 47.826 0.00 0.00 32.84 2.73
2331 2826 4.223953 CTCAAGGCCCCATACTTAGAGTA 58.776 47.826 0.00 0.00 34.82 2.59
2332 2827 3.041946 CTCAAGGCCCCATACTTAGAGT 58.958 50.000 0.00 0.00 0.00 3.24
2333 2828 3.041946 ACTCAAGGCCCCATACTTAGAG 58.958 50.000 0.00 0.00 32.81 2.43
2334 2829 3.130734 ACTCAAGGCCCCATACTTAGA 57.869 47.619 0.00 0.00 0.00 2.10
2335 2830 3.933861 AACTCAAGGCCCCATACTTAG 57.066 47.619 0.00 0.00 0.00 2.18
2336 2831 5.034200 TCTTAACTCAAGGCCCCATACTTA 58.966 41.667 0.00 0.00 34.76 2.24
2337 2832 3.850173 TCTTAACTCAAGGCCCCATACTT 59.150 43.478 0.00 0.00 34.76 2.24
2338 2833 3.456277 CTCTTAACTCAAGGCCCCATACT 59.544 47.826 0.00 0.00 34.76 2.12
2339 2834 3.454812 TCTCTTAACTCAAGGCCCCATAC 59.545 47.826 0.00 0.00 34.76 2.39
2340 2835 3.731431 TCTCTTAACTCAAGGCCCCATA 58.269 45.455 0.00 0.00 34.76 2.74
2341 2836 2.562296 TCTCTTAACTCAAGGCCCCAT 58.438 47.619 0.00 0.00 34.76 4.00
2342 2837 2.038863 TCTCTTAACTCAAGGCCCCA 57.961 50.000 0.00 0.00 34.76 4.96
2343 2838 3.201045 AGAATCTCTTAACTCAAGGCCCC 59.799 47.826 0.00 0.00 34.76 5.80
2344 2839 4.495690 AGAATCTCTTAACTCAAGGCCC 57.504 45.455 0.00 0.00 34.76 5.80
2345 2840 5.249420 ACAAGAATCTCTTAACTCAAGGCC 58.751 41.667 0.00 0.00 33.78 5.19
2346 2841 7.907214 TTACAAGAATCTCTTAACTCAAGGC 57.093 36.000 0.00 0.00 33.78 4.35
2391 2886 9.607285 CACATAAAACGCTTCAAGTTATTTACT 57.393 29.630 0.00 0.00 39.32 2.24
2392 2887 8.363029 GCACATAAAACGCTTCAAGTTATTTAC 58.637 33.333 0.00 0.00 0.00 2.01
2393 2888 7.269511 CGCACATAAAACGCTTCAAGTTATTTA 59.730 33.333 0.00 0.00 0.00 1.40
2394 2889 6.087555 CGCACATAAAACGCTTCAAGTTATTT 59.912 34.615 0.00 0.00 0.00 1.40
2395 2890 5.567534 CGCACATAAAACGCTTCAAGTTATT 59.432 36.000 0.00 0.00 0.00 1.40
2396 2891 5.086058 CGCACATAAAACGCTTCAAGTTAT 58.914 37.500 0.00 0.00 0.00 1.89
2397 2892 4.459606 CGCACATAAAACGCTTCAAGTTA 58.540 39.130 0.00 0.00 0.00 2.24
2398 2893 3.296628 CGCACATAAAACGCTTCAAGTT 58.703 40.909 0.00 0.00 0.00 2.66
2399 2894 2.916111 CGCACATAAAACGCTTCAAGT 58.084 42.857 0.00 0.00 0.00 3.16
2407 2902 1.910819 GATTGTGGCGCACATAAAACG 59.089 47.619 10.83 0.00 44.16 3.60
2408 2903 2.916716 CAGATTGTGGCGCACATAAAAC 59.083 45.455 10.83 8.37 44.16 2.43
2409 2904 2.094803 CCAGATTGTGGCGCACATAAAA 60.095 45.455 10.83 2.29 44.16 1.52
2410 2905 1.472082 CCAGATTGTGGCGCACATAAA 59.528 47.619 10.83 4.73 44.16 1.40
2411 2906 1.093972 CCAGATTGTGGCGCACATAA 58.906 50.000 10.83 10.09 44.16 1.90
2412 2907 2.779282 CCAGATTGTGGCGCACATA 58.221 52.632 10.83 0.00 44.16 2.29
2413 2908 3.594568 CCAGATTGTGGCGCACAT 58.405 55.556 10.83 0.00 44.16 3.21
2421 2916 3.750371 TGGTAACAGGAACCAGATTGTG 58.250 45.455 0.00 0.00 46.17 3.33
2496 2991 9.713684 TTTTTACCCAGATATGGAATCAAAGAT 57.286 29.630 8.28 0.00 0.00 2.40
2497 2992 9.189156 CTTTTTACCCAGATATGGAATCAAAGA 57.811 33.333 8.28 0.00 0.00 2.52
2498 2993 9.189156 TCTTTTTACCCAGATATGGAATCAAAG 57.811 33.333 8.28 10.58 0.00 2.77
2499 2994 9.540538 TTCTTTTTACCCAGATATGGAATCAAA 57.459 29.630 8.28 1.19 0.00 2.69
2500 2995 9.540538 TTTCTTTTTACCCAGATATGGAATCAA 57.459 29.630 8.28 0.00 0.00 2.57
2501 2996 9.713684 ATTTCTTTTTACCCAGATATGGAATCA 57.286 29.630 8.28 0.00 0.00 2.57
2504 2999 9.320295 ACAATTTCTTTTTACCCAGATATGGAA 57.680 29.630 8.28 0.00 0.00 3.53
2505 3000 8.748412 CACAATTTCTTTTTACCCAGATATGGA 58.252 33.333 8.28 0.00 0.00 3.41
2506 3001 7.981225 CCACAATTTCTTTTTACCCAGATATGG 59.019 37.037 0.00 0.00 0.00 2.74
2507 3002 7.981225 CCCACAATTTCTTTTTACCCAGATATG 59.019 37.037 0.00 0.00 0.00 1.78
2508 3003 7.125659 CCCCACAATTTCTTTTTACCCAGATAT 59.874 37.037 0.00 0.00 0.00 1.63
2509 3004 6.439058 CCCCACAATTTCTTTTTACCCAGATA 59.561 38.462 0.00 0.00 0.00 1.98
2510 3005 5.248248 CCCCACAATTTCTTTTTACCCAGAT 59.752 40.000 0.00 0.00 0.00 2.90
2511 3006 4.591072 CCCCACAATTTCTTTTTACCCAGA 59.409 41.667 0.00 0.00 0.00 3.86
2512 3007 4.802583 GCCCCACAATTTCTTTTTACCCAG 60.803 45.833 0.00 0.00 0.00 4.45
2513 3008 3.071747 GCCCCACAATTTCTTTTTACCCA 59.928 43.478 0.00 0.00 0.00 4.51
2514 3009 3.558321 GGCCCCACAATTTCTTTTTACCC 60.558 47.826 0.00 0.00 0.00 3.69
2515 3010 3.071747 TGGCCCCACAATTTCTTTTTACC 59.928 43.478 0.00 0.00 0.00 2.85
2516 3011 4.344359 TGGCCCCACAATTTCTTTTTAC 57.656 40.909 0.00 0.00 0.00 2.01
2517 3012 5.312079 CATTGGCCCCACAATTTCTTTTTA 58.688 37.500 0.00 0.00 38.94 1.52
2518 3013 3.941704 TTGGCCCCACAATTTCTTTTT 57.058 38.095 0.00 0.00 0.00 1.94
2519 3014 3.498301 CCATTGGCCCCACAATTTCTTTT 60.498 43.478 0.00 0.00 38.94 2.27
2520 3015 2.040145 CCATTGGCCCCACAATTTCTTT 59.960 45.455 0.00 0.00 38.94 2.52
2521 3016 1.629861 CCATTGGCCCCACAATTTCTT 59.370 47.619 0.00 0.00 38.94 2.52
2522 3017 1.278537 CCATTGGCCCCACAATTTCT 58.721 50.000 0.00 0.00 38.94 2.52
2523 3018 0.252761 CCCATTGGCCCCACAATTTC 59.747 55.000 0.00 0.00 38.94 2.17
2524 3019 2.385777 CCCATTGGCCCCACAATTT 58.614 52.632 0.00 0.00 38.94 1.82
2525 3020 4.150541 CCCATTGGCCCCACAATT 57.849 55.556 0.00 0.00 38.94 2.32
2535 3030 0.549950 ACTCAGAGATGGCCCATTGG 59.450 55.000 3.79 0.00 0.00 3.16
2536 3031 2.431954 AACTCAGAGATGGCCCATTG 57.568 50.000 3.79 0.00 0.00 2.82
2537 3032 3.118531 AGTAACTCAGAGATGGCCCATT 58.881 45.455 3.79 0.00 0.00 3.16
2538 3033 2.769209 AGTAACTCAGAGATGGCCCAT 58.231 47.619 3.79 0.00 0.00 4.00
2539 3034 2.254152 AGTAACTCAGAGATGGCCCA 57.746 50.000 3.79 0.00 0.00 5.36
2540 3035 3.031736 TGTAGTAACTCAGAGATGGCCC 58.968 50.000 3.79 0.00 0.00 5.80
2541 3036 4.737855 TTGTAGTAACTCAGAGATGGCC 57.262 45.455 3.79 0.00 0.00 5.36
2542 3037 5.932303 TGTTTTGTAGTAACTCAGAGATGGC 59.068 40.000 3.79 0.00 0.00 4.40
2543 3038 7.819415 TCATGTTTTGTAGTAACTCAGAGATGG 59.181 37.037 3.79 0.00 0.00 3.51
2544 3039 8.763049 TCATGTTTTGTAGTAACTCAGAGATG 57.237 34.615 3.79 0.00 0.00 2.90
2545 3040 9.429359 CTTCATGTTTTGTAGTAACTCAGAGAT 57.571 33.333 3.79 0.00 0.00 2.75
2546 3041 8.421784 ACTTCATGTTTTGTAGTAACTCAGAGA 58.578 33.333 3.79 0.00 34.53 3.10
2547 3042 8.594881 ACTTCATGTTTTGTAGTAACTCAGAG 57.405 34.615 0.00 0.00 34.53 3.35
2548 3043 8.958119 AACTTCATGTTTTGTAGTAACTCAGA 57.042 30.769 0.00 0.00 35.15 3.27
2549 3044 8.826710 TGAACTTCATGTTTTGTAGTAACTCAG 58.173 33.333 0.00 0.00 39.30 3.35
2550 3045 8.725405 TGAACTTCATGTTTTGTAGTAACTCA 57.275 30.769 0.00 0.00 39.30 3.41
2551 3046 9.997482 TTTGAACTTCATGTTTTGTAGTAACTC 57.003 29.630 0.00 0.00 39.30 3.01
2554 3049 9.796120 CCTTTTGAACTTCATGTTTTGTAGTAA 57.204 29.630 0.00 0.00 39.30 2.24
2555 3050 9.179909 TCCTTTTGAACTTCATGTTTTGTAGTA 57.820 29.630 0.00 0.00 39.30 1.82
2556 3051 8.062065 TCCTTTTGAACTTCATGTTTTGTAGT 57.938 30.769 0.00 0.00 39.30 2.73
2557 3052 8.925161 TTCCTTTTGAACTTCATGTTTTGTAG 57.075 30.769 0.00 0.00 39.30 2.74
2572 3067 5.070180 TGCATCTCCAAATGTTCCTTTTGAA 59.930 36.000 4.67 0.00 36.40 2.69
2573 3068 4.588106 TGCATCTCCAAATGTTCCTTTTGA 59.412 37.500 4.67 0.00 36.40 2.69
2574 3069 4.885413 TGCATCTCCAAATGTTCCTTTTG 58.115 39.130 0.00 0.00 34.55 2.44
2575 3070 5.070847 ACTTGCATCTCCAAATGTTCCTTTT 59.929 36.000 0.00 0.00 0.00 2.27
2576 3071 4.590222 ACTTGCATCTCCAAATGTTCCTTT 59.410 37.500 0.00 0.00 0.00 3.11
2577 3072 4.021719 CACTTGCATCTCCAAATGTTCCTT 60.022 41.667 0.00 0.00 0.00 3.36
2578 3073 3.508793 CACTTGCATCTCCAAATGTTCCT 59.491 43.478 0.00 0.00 0.00 3.36
2579 3074 3.256631 ACACTTGCATCTCCAAATGTTCC 59.743 43.478 0.00 0.00 31.89 3.62
2580 3075 4.217118 AGACACTTGCATCTCCAAATGTTC 59.783 41.667 0.00 0.00 35.56 3.18
2581 3076 4.147321 AGACACTTGCATCTCCAAATGTT 58.853 39.130 0.00 0.00 35.56 2.71
2582 3077 3.759581 AGACACTTGCATCTCCAAATGT 58.240 40.909 0.00 0.00 37.81 2.71
2583 3078 4.458295 AGAAGACACTTGCATCTCCAAATG 59.542 41.667 0.00 0.00 0.00 2.32
2584 3079 4.660168 AGAAGACACTTGCATCTCCAAAT 58.340 39.130 0.00 0.00 0.00 2.32
2585 3080 4.067896 GAGAAGACACTTGCATCTCCAAA 58.932 43.478 0.60 0.00 32.30 3.28
2586 3081 3.071457 TGAGAAGACACTTGCATCTCCAA 59.929 43.478 8.38 0.00 36.54 3.53
2587 3082 2.634453 TGAGAAGACACTTGCATCTCCA 59.366 45.455 8.38 0.00 36.54 3.86
2588 3083 3.325293 TGAGAAGACACTTGCATCTCC 57.675 47.619 8.38 0.00 36.54 3.71
2589 3084 5.900425 TCTATGAGAAGACACTTGCATCTC 58.100 41.667 4.60 4.60 37.60 2.75
2590 3085 5.929058 TCTATGAGAAGACACTTGCATCT 57.071 39.130 0.00 0.00 0.00 2.90
2591 3086 6.047870 ACATCTATGAGAAGACACTTGCATC 58.952 40.000 0.00 0.00 0.00 3.91
2592 3087 5.987098 ACATCTATGAGAAGACACTTGCAT 58.013 37.500 0.00 0.00 0.00 3.96
2593 3088 5.411831 ACATCTATGAGAAGACACTTGCA 57.588 39.130 0.00 0.00 0.00 4.08
2594 3089 6.369890 TCAAACATCTATGAGAAGACACTTGC 59.630 38.462 0.00 0.00 0.00 4.01
2827 3909 7.114247 GCACGCTGAAAGTAACATTTTATTTCA 59.886 33.333 0.00 0.00 37.49 2.69
2850 3932 1.032114 GTATGAAGCTGGGGGTGCAC 61.032 60.000 8.80 8.80 30.50 4.57
2858 3940 8.641498 AAGGAATATAAATGGTATGAAGCTGG 57.359 34.615 0.00 0.00 0.00 4.85
3093 4190 7.148000 GGGATATTCAGTCAAGGAAAAGGAAAG 60.148 40.741 0.00 0.00 0.00 2.62
3110 4207 4.141251 GCCAGTAGGGAAAAGGGATATTCA 60.141 45.833 0.00 0.00 40.01 2.57
3115 4212 1.566231 CTGCCAGTAGGGAAAAGGGAT 59.434 52.381 0.00 0.00 40.01 3.85
3160 4257 6.997655 CCTCTGGCAGTGTAGATATTGATAA 58.002 40.000 15.27 0.00 0.00 1.75
3233 4330 2.264794 GAACGTCCTGGCCATCGT 59.735 61.111 19.87 19.87 38.15 3.73
3252 4349 2.033801 AGAATTTGACACACACAGCTGC 59.966 45.455 15.27 0.00 0.00 5.25
3267 4364 2.161609 GCGGTGATCGTCCAAAGAATTT 59.838 45.455 7.38 0.00 39.30 1.82
3308 4405 1.933853 GATACGCCACTGTTGACCATC 59.066 52.381 0.00 0.00 0.00 3.51
3309 4406 1.555075 AGATACGCCACTGTTGACCAT 59.445 47.619 0.00 0.00 0.00 3.55
3310 4407 0.973632 AGATACGCCACTGTTGACCA 59.026 50.000 0.00 0.00 0.00 4.02
3312 4409 2.481449 CCCTAGATACGCCACTGTTGAC 60.481 54.545 0.00 0.00 0.00 3.18
3313 4410 1.754803 CCCTAGATACGCCACTGTTGA 59.245 52.381 0.00 0.00 0.00 3.18
3314 4411 1.202533 CCCCTAGATACGCCACTGTTG 60.203 57.143 0.00 0.00 0.00 3.33
3315 4412 1.120530 CCCCTAGATACGCCACTGTT 58.879 55.000 0.00 0.00 0.00 3.16
3316 4413 0.759436 CCCCCTAGATACGCCACTGT 60.759 60.000 0.00 0.00 0.00 3.55
3317 4414 0.759436 ACCCCCTAGATACGCCACTG 60.759 60.000 0.00 0.00 0.00 3.66
3318 4415 0.759436 CACCCCCTAGATACGCCACT 60.759 60.000 0.00 0.00 0.00 4.00
3319 4416 1.746517 CACCCCCTAGATACGCCAC 59.253 63.158 0.00 0.00 0.00 5.01
3320 4417 1.458777 CCACCCCCTAGATACGCCA 60.459 63.158 0.00 0.00 0.00 5.69
3321 4418 1.152398 TCCACCCCCTAGATACGCC 60.152 63.158 0.00 0.00 0.00 5.68
3322 4419 0.757935 TGTCCACCCCCTAGATACGC 60.758 60.000 0.00 0.00 0.00 4.42
3323 4420 1.329256 CTGTCCACCCCCTAGATACG 58.671 60.000 0.00 0.00 0.00 3.06
3324 4421 1.718280 CCTGTCCACCCCCTAGATAC 58.282 60.000 0.00 0.00 0.00 2.24
3325 4422 0.566176 CCCTGTCCACCCCCTAGATA 59.434 60.000 0.00 0.00 0.00 1.98
3326 4423 1.318380 CCCTGTCCACCCCCTAGAT 59.682 63.158 0.00 0.00 0.00 1.98
3327 4424 2.181773 ACCCTGTCCACCCCCTAGA 61.182 63.158 0.00 0.00 0.00 2.43
3328 4425 1.995626 CACCCTGTCCACCCCCTAG 60.996 68.421 0.00 0.00 0.00 3.02
3329 4426 2.124085 CACCCTGTCCACCCCCTA 59.876 66.667 0.00 0.00 0.00 3.53
3332 4429 3.647771 GACCACCCTGTCCACCCC 61.648 72.222 0.00 0.00 0.00 4.95
3338 4435 1.299976 GTCCATGGACCACCCTGTC 59.700 63.158 31.37 5.53 39.08 3.51
3339 4436 3.495729 GTCCATGGACCACCCTGT 58.504 61.111 31.37 0.00 39.08 4.00
3350 4447 2.102578 GAAATTCCAGGGTGGTCCATG 58.897 52.381 0.00 0.00 44.12 3.66
3351 4448 1.007118 GGAAATTCCAGGGTGGTCCAT 59.993 52.381 7.23 0.00 39.03 3.41
3352 4449 0.407918 GGAAATTCCAGGGTGGTCCA 59.592 55.000 7.23 0.00 39.03 4.02
3353 4450 0.324368 GGGAAATTCCAGGGTGGTCC 60.324 60.000 14.68 0.00 38.64 4.46
3354 4451 0.324368 GGGGAAATTCCAGGGTGGTC 60.324 60.000 14.68 0.00 38.64 4.02
3355 4452 1.077298 TGGGGAAATTCCAGGGTGGT 61.077 55.000 14.68 0.00 38.64 4.16
3356 4453 0.339510 ATGGGGAAATTCCAGGGTGG 59.660 55.000 14.68 0.00 38.64 4.61
3357 4454 3.396685 TTATGGGGAAATTCCAGGGTG 57.603 47.619 14.68 0.00 38.64 4.61
3358 4455 5.966968 ATATTATGGGGAAATTCCAGGGT 57.033 39.130 14.68 0.00 38.64 4.34
3423 4520 9.111613 CCACCAATGCAAAATATTCACATAAAT 57.888 29.630 0.00 0.00 0.00 1.40
3424 4521 8.316946 TCCACCAATGCAAAATATTCACATAAA 58.683 29.630 0.00 0.00 0.00 1.40
3425 4522 7.763528 GTCCACCAATGCAAAATATTCACATAA 59.236 33.333 0.00 0.00 0.00 1.90
3426 4523 7.264221 GTCCACCAATGCAAAATATTCACATA 58.736 34.615 0.00 0.00 0.00 2.29
3427 4524 6.108015 GTCCACCAATGCAAAATATTCACAT 58.892 36.000 0.00 0.00 0.00 3.21
3428 4525 5.477510 GTCCACCAATGCAAAATATTCACA 58.522 37.500 0.00 0.00 0.00 3.58
3429 4526 4.869861 GGTCCACCAATGCAAAATATTCAC 59.130 41.667 0.00 0.00 35.64 3.18
3430 4527 4.529769 TGGTCCACCAATGCAAAATATTCA 59.470 37.500 0.00 0.00 44.35 2.57
3431 4528 5.083533 TGGTCCACCAATGCAAAATATTC 57.916 39.130 0.00 0.00 44.35 1.75
3446 4543 2.361610 CATGCCAGGGTGGTCCAC 60.362 66.667 14.13 14.13 40.46 4.02
3447 4544 2.468868 AACATGCCAGGGTGGTCCA 61.469 57.895 0.00 0.00 40.46 4.02
3448 4545 1.978617 CAACATGCCAGGGTGGTCC 60.979 63.158 0.00 0.00 40.46 4.46
3449 4546 1.978617 CCAACATGCCAGGGTGGTC 60.979 63.158 4.99 0.00 40.46 4.02
3450 4547 2.118076 CCAACATGCCAGGGTGGT 59.882 61.111 4.99 0.00 40.46 4.16
3451 4548 2.681064 CCCAACATGCCAGGGTGG 60.681 66.667 6.42 6.42 41.55 4.61
3452 4549 2.497792 TAGCCCAACATGCCAGGGTG 62.498 60.000 16.46 0.00 44.69 4.61
3453 4550 2.215451 CTAGCCCAACATGCCAGGGT 62.215 60.000 16.46 11.28 44.69 4.34
3454 4551 1.454479 CTAGCCCAACATGCCAGGG 60.454 63.158 12.20 12.20 45.68 4.45
3455 4552 2.123428 GCTAGCCCAACATGCCAGG 61.123 63.158 2.29 0.00 0.00 4.45
3456 4553 0.181114 TAGCTAGCCCAACATGCCAG 59.819 55.000 12.13 0.00 0.00 4.85
3457 4554 0.107214 GTAGCTAGCCCAACATGCCA 60.107 55.000 12.13 0.00 0.00 4.92
3458 4555 1.160329 CGTAGCTAGCCCAACATGCC 61.160 60.000 12.13 0.00 0.00 4.40
3459 4556 2.311294 CGTAGCTAGCCCAACATGC 58.689 57.895 12.13 0.00 0.00 4.06
3479 4576 1.073964 CACGAGCTTGACCATCAGTG 58.926 55.000 8.31 0.00 0.00 3.66
3480 4577 0.036952 CCACGAGCTTGACCATCAGT 60.037 55.000 8.31 0.00 0.00 3.41
3481 4578 1.364626 GCCACGAGCTTGACCATCAG 61.365 60.000 8.31 0.00 38.99 2.90
3482 4579 1.375908 GCCACGAGCTTGACCATCA 60.376 57.895 8.31 0.00 38.99 3.07
3483 4580 2.456119 CGCCACGAGCTTGACCATC 61.456 63.158 8.31 0.00 40.39 3.51
3507 4604 8.641498 ATTCCTAAGTTCATGAGTTGAAACAT 57.359 30.769 0.00 0.00 45.71 2.71
3517 4614 6.038161 CCGTAATGCAATTCCTAAGTTCATGA 59.962 38.462 0.00 0.00 37.87 3.07
3519 4616 5.885912 ACCGTAATGCAATTCCTAAGTTCAT 59.114 36.000 0.00 0.00 37.87 2.57
3540 4637 3.198068 CATCCAGGACTGAATGTTACCG 58.802 50.000 0.00 0.00 0.00 4.02
3550 4647 0.529337 CGCTACAGCATCCAGGACTG 60.529 60.000 5.66 5.66 42.21 3.51
3581 4679 3.243873 CGTGAGCCTGTGACCATACATAT 60.244 47.826 0.00 0.00 0.00 1.78
3603 4701 5.241662 AGTGATCTTAGAAACACTCAAGCC 58.758 41.667 15.60 0.00 38.95 4.35
3664 4850 0.248661 AGATCCGAGTCAACATCGCG 60.249 55.000 0.00 0.00 38.84 5.87
3699 4887 5.330295 GCTGATTTTACTCATGTTCTGCAG 58.670 41.667 7.63 7.63 30.05 4.41
3780 4972 4.119862 CAAACATCATCCCAGTAGTACCG 58.880 47.826 0.00 0.00 0.00 4.02
3796 4988 3.705051 ACATGAAGATGGAGGCAAACAT 58.295 40.909 0.00 0.00 33.39 2.71
3801 4993 3.202818 ACCATTACATGAAGATGGAGGCA 59.797 43.478 23.68 0.00 42.31 4.75
3802 4994 3.825328 ACCATTACATGAAGATGGAGGC 58.175 45.455 23.68 0.00 42.31 4.70
3804 4996 5.007039 CGTGAACCATTACATGAAGATGGAG 59.993 44.000 23.68 11.51 42.31 3.86
3805 4997 4.875536 CGTGAACCATTACATGAAGATGGA 59.124 41.667 23.68 7.64 42.31 3.41
3806 4998 4.635765 ACGTGAACCATTACATGAAGATGG 59.364 41.667 18.55 18.55 44.64 3.51
3807 4999 5.122239 ACACGTGAACCATTACATGAAGATG 59.878 40.000 25.01 0.18 35.49 2.90
3808 5000 5.122239 CACACGTGAACCATTACATGAAGAT 59.878 40.000 25.01 0.00 0.00 2.40
3809 5001 4.450757 CACACGTGAACCATTACATGAAGA 59.549 41.667 25.01 0.00 0.00 2.87
3810 5002 4.213270 ACACACGTGAACCATTACATGAAG 59.787 41.667 25.01 0.00 0.00 3.02
3811 5003 4.024472 CACACACGTGAACCATTACATGAA 60.024 41.667 25.01 0.00 46.80 2.57
3812 5004 3.496507 CACACACGTGAACCATTACATGA 59.503 43.478 25.01 0.00 46.80 3.07
3934 5132 2.633509 CCAAGCCAAGCCAGTGAGC 61.634 63.158 0.00 0.00 0.00 4.26
3950 5148 0.541392 AAGTGACACTGACACAGCCA 59.459 50.000 9.33 0.00 40.25 4.75
3951 5149 0.940126 CAAGTGACACTGACACAGCC 59.060 55.000 9.33 0.00 40.25 4.85
3952 5150 0.940126 CCAAGTGACACTGACACAGC 59.060 55.000 9.33 0.00 40.25 4.40
3953 5151 0.940126 GCCAAGTGACACTGACACAG 59.060 55.000 9.33 5.96 40.25 3.66
3954 5152 0.541392 AGCCAAGTGACACTGACACA 59.459 50.000 9.33 0.00 40.25 3.72
4181 5383 4.634883 CAGATCTGAGTCATTTTCACCCAG 59.365 45.833 18.34 0.00 0.00 4.45
4187 5389 8.489990 TGAGAAATCAGATCTGAGTCATTTTC 57.510 34.615 26.86 26.86 43.61 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.