Multiple sequence alignment - TraesCS3B01G067600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G067600 chr3B 100.000 3655 0 0 1 3655 40186453 40182799 0.000000e+00 6750.0
1 TraesCS3B01G067600 chr3B 99.373 2232 12 2 47 2276 40138661 40140892 0.000000e+00 4043.0
2 TraesCS3B01G067600 chr3B 95.161 682 16 6 1 671 40130967 40131642 0.000000e+00 1061.0
3 TraesCS3B01G067600 chr3B 75.953 341 30 17 1570 1870 40140607 40140935 1.070000e-25 128.0
4 TraesCS3B01G067600 chr3B 86.441 118 5 5 671 788 40131607 40131713 6.410000e-23 119.0
5 TraesCS3B01G067600 chr3B 91.935 62 1 3 1515 1576 554547103 554547160 2.340000e-12 84.2
6 TraesCS3B01G067600 chr3B 94.444 54 3 0 1518 1571 821402063 821402116 2.340000e-12 84.2
7 TraesCS3B01G067600 chr3B 94.444 54 3 0 1518 1571 821402116 821402063 2.340000e-12 84.2
8 TraesCS3B01G067600 chr3B 91.379 58 5 0 1515 1572 126915828 126915885 3.030000e-11 80.5
9 TraesCS3B01G067600 chr3B 100.000 31 0 0 804 834 40131696 40131726 1.420000e-04 58.4
10 TraesCS3B01G067600 chr3D 95.888 681 21 4 2256 2934 22679807 22680482 0.000000e+00 1096.0
11 TraesCS3B01G067600 chr3D 90.897 736 17 14 804 1520 22677586 22678290 0.000000e+00 942.0
12 TraesCS3B01G067600 chr3D 90.897 736 17 14 804 1520 22769372 22768668 0.000000e+00 942.0
13 TraesCS3B01G067600 chr3D 92.953 596 22 5 3063 3645 22682854 22683442 0.000000e+00 850.0
14 TraesCS3B01G067600 chr3D 95.522 469 8 4 3189 3645 22683446 22683913 0.000000e+00 737.0
15 TraesCS3B01G067600 chr3D 85.831 734 48 16 804 1512 22800021 22799319 0.000000e+00 728.0
16 TraesCS3B01G067600 chr3D 94.255 470 14 4 3189 3645 22684367 22684836 0.000000e+00 706.0
17 TraesCS3B01G067600 chr3D 93.277 476 23 6 1803 2278 22679189 22679655 0.000000e+00 693.0
18 TraesCS3B01G067600 chr3D 90.397 479 31 9 171 644 22769892 22769424 1.870000e-172 616.0
19 TraesCS3B01G067600 chr3D 90.372 457 29 9 171 626 22800526 22800084 1.460000e-163 586.0
20 TraesCS3B01G067600 chr3D 90.192 469 12 2 3189 3645 22683917 22684363 6.800000e-162 580.0
21 TraesCS3B01G067600 chr3D 89.781 411 28 8 239 644 22677133 22677534 7.000000e-142 514.0
22 TraesCS3B01G067600 chr3D 82.529 435 43 19 1791 2201 22678630 22679055 5.810000e-93 351.0
23 TraesCS3B01G067600 chr3D 82.710 428 43 18 1801 2204 22768320 22767900 5.810000e-93 351.0
24 TraesCS3B01G067600 chr3D 84.665 313 24 8 3355 3643 532937982 532937670 1.280000e-74 291.0
25 TraesCS3B01G067600 chr3D 96.450 169 5 1 1570 1738 22678842 22679009 1.000000e-70 278.0
26 TraesCS3B01G067600 chr3D 96.450 169 5 1 1570 1738 22768116 22767949 1.000000e-70 278.0
27 TraesCS3B01G067600 chr3D 95.858 169 6 1 1570 1738 22678293 22678460 4.650000e-69 272.0
28 TraesCS3B01G067600 chr3D 95.858 169 6 1 1570 1738 22768665 22768498 4.650000e-69 272.0
29 TraesCS3B01G067600 chr3D 91.667 168 11 2 171 338 22770563 22770399 2.840000e-56 230.0
30 TraesCS3B01G067600 chr3D 98.450 129 2 0 1 129 22770026 22769898 1.020000e-55 228.0
31 TraesCS3B01G067600 chr3D 96.269 134 5 0 1 134 22669790 22669923 1.710000e-53 220.0
32 TraesCS3B01G067600 chr3D 97.619 126 3 0 4 129 22770694 22770569 2.210000e-52 217.0
33 TraesCS3B01G067600 chr3D 91.489 94 4 2 2967 3060 22682706 22682795 3.830000e-25 126.0
34 TraesCS3B01G067600 chr3D 98.507 67 1 0 1803 1869 22767769 22767703 6.410000e-23 119.0
35 TraesCS3B01G067600 chr3D 91.011 89 2 1 700 788 22677521 22677603 8.290000e-22 115.0
36 TraesCS3B01G067600 chr3D 91.011 89 2 1 700 788 22769437 22769355 8.290000e-22 115.0
37 TraesCS3B01G067600 chr3D 98.333 60 1 0 2217 2276 22678605 22678664 4.990000e-19 106.0
38 TraesCS3B01G067600 chr3D 95.455 66 3 0 2217 2282 22768353 22768288 4.990000e-19 106.0
39 TraesCS3B01G067600 chr3D 85.714 91 3 4 1439 1519 22678753 22678843 1.810000e-13 87.9
40 TraesCS3B01G067600 chr3D 85.714 91 3 4 1439 1519 22768205 22768115 1.810000e-13 87.9
41 TraesCS3B01G067600 chr3D 93.103 58 2 1 1516 1571 502052267 502052324 2.340000e-12 84.2
42 TraesCS3B01G067600 chr3D 100.000 41 0 0 1737 1777 22679024 22679064 3.910000e-10 76.8
43 TraesCS3B01G067600 chr3D 100.000 41 0 0 1737 1777 22767934 22767894 3.910000e-10 76.8
44 TraesCS3B01G067600 chrUn 88.757 169 14 3 3481 3645 212992027 212992194 6.190000e-48 202.0
45 TraesCS3B01G067600 chrUn 88.757 169 14 3 3481 3645 243196499 243196332 6.190000e-48 202.0
46 TraesCS3B01G067600 chrUn 88.757 169 14 3 3481 3645 383395854 383396021 6.190000e-48 202.0
47 TraesCS3B01G067600 chr2B 88.757 169 14 3 3481 3645 8358072 8358239 6.190000e-48 202.0
48 TraesCS3B01G067600 chr2B 97.297 37 1 0 136 172 140886283 140886247 3.050000e-06 63.9
49 TraesCS3B01G067600 chr7D 96.364 55 1 1 1517 1571 400855178 400855231 5.030000e-14 89.8
50 TraesCS3B01G067600 chr6A 90.769 65 3 3 1511 1575 616816309 616816370 2.340000e-12 84.2
51 TraesCS3B01G067600 chr1D 91.803 61 3 2 1518 1577 10816054 10816113 2.340000e-12 84.2
52 TraesCS3B01G067600 chr5B 97.297 37 1 0 136 172 249583113 249583149 3.050000e-06 63.9
53 TraesCS3B01G067600 chr4B 97.059 34 1 0 139 172 281732154 281732121 1.420000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G067600 chr3B 40182799 40186453 3654 True 6750.00000 6750 100.000000 1 3655 1 chr3B.!!$R1 3654
1 TraesCS3B01G067600 chr3B 40138661 40140935 2274 False 2085.50000 4043 87.663000 47 2276 2 chr3B.!!$F5 2229
2 TraesCS3B01G067600 chr3B 40130967 40131726 759 False 412.80000 1061 93.867333 1 834 3 chr3B.!!$F4 833
3 TraesCS3B01G067600 chr3D 22799319 22800526 1207 True 657.00000 728 88.101500 171 1512 2 chr3D.!!$R3 1341
4 TraesCS3B01G067600 chr3D 22677133 22684836 7703 False 470.66875 1096 92.759312 239 3645 16 chr3D.!!$F3 3406
5 TraesCS3B01G067600 chr3D 22767703 22770694 2991 True 279.90000 942 93.441154 1 2282 13 chr3D.!!$R2 2281

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 1482 6.471233 AGAATCTGGACAAGACGATATTCA 57.529 37.5 0.0 0.0 37.88 2.57 F
2393 4096 0.597568 CCATTGCCTTTTCTCGTGCA 59.402 50.0 0.0 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2456 4159 0.618458 TCATTTCGCCTGCCCTAACT 59.382 50.0 0.0 0.0 0.00 2.24 R
3284 7717 0.738389 ACGTGTGGCAACTTTCTTGG 59.262 50.0 0.0 0.0 37.61 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
676 1360 6.823182 AGGGAAAGAAGGAATGTTTTGTTTTG 59.177 34.615 0.00 0.00 0.00 2.44
779 1468 9.567776 TGTTTTGTTGTTAGATTAGAATCTGGA 57.432 29.630 13.87 1.54 45.01 3.86
780 1469 9.827411 GTTTTGTTGTTAGATTAGAATCTGGAC 57.173 33.333 13.87 12.20 45.01 4.02
781 1470 9.567776 TTTTGTTGTTAGATTAGAATCTGGACA 57.432 29.630 13.87 14.15 45.01 4.02
782 1471 9.567776 TTTGTTGTTAGATTAGAATCTGGACAA 57.432 29.630 20.52 20.52 45.01 3.18
783 1472 8.777865 TGTTGTTAGATTAGAATCTGGACAAG 57.222 34.615 22.75 0.00 44.30 3.16
784 1473 8.593679 TGTTGTTAGATTAGAATCTGGACAAGA 58.406 33.333 22.75 20.65 44.30 3.02
785 1474 8.874816 GTTGTTAGATTAGAATCTGGACAAGAC 58.125 37.037 22.75 15.49 44.30 3.01
786 1475 7.258441 TGTTAGATTAGAATCTGGACAAGACG 58.742 38.462 13.87 0.00 45.01 4.18
787 1476 7.122204 TGTTAGATTAGAATCTGGACAAGACGA 59.878 37.037 13.87 0.00 45.01 4.20
788 1477 6.723298 AGATTAGAATCTGGACAAGACGAT 57.277 37.500 3.95 0.00 43.81 3.73
789 1478 7.825331 AGATTAGAATCTGGACAAGACGATA 57.175 36.000 3.95 0.00 43.81 2.92
790 1479 8.415950 AGATTAGAATCTGGACAAGACGATAT 57.584 34.615 3.95 0.00 43.81 1.63
791 1480 8.865090 AGATTAGAATCTGGACAAGACGATATT 58.135 33.333 3.95 0.00 43.81 1.28
792 1481 9.134734 GATTAGAATCTGGACAAGACGATATTC 57.865 37.037 0.00 0.00 37.88 1.75
793 1482 6.471233 AGAATCTGGACAAGACGATATTCA 57.529 37.500 0.00 0.00 37.88 2.57
794 1483 6.878317 AGAATCTGGACAAGACGATATTCAA 58.122 36.000 0.00 0.00 37.88 2.69
795 1484 7.331026 AGAATCTGGACAAGACGATATTCAAA 58.669 34.615 0.00 0.00 37.88 2.69
796 1485 7.824289 AGAATCTGGACAAGACGATATTCAAAA 59.176 33.333 0.00 0.00 37.88 2.44
797 1486 7.921786 ATCTGGACAAGACGATATTCAAAAA 57.078 32.000 0.00 0.00 37.88 1.94
1882 3303 3.494048 GGTCTTGACTCTGATGGCATAGG 60.494 52.174 0.00 0.00 0.00 2.57
2393 4096 0.597568 CCATTGCCTTTTCTCGTGCA 59.402 50.000 0.00 0.00 0.00 4.57
2483 4186 0.449388 CAGGCGAAATGAAGCAGACC 59.551 55.000 0.00 0.00 34.54 3.85
2508 4211 2.831526 GTTACCATTGGCTTCATGGGTT 59.168 45.455 1.54 0.00 39.68 4.11
2520 4223 3.866703 TCATGGGTTGTTTGACTGGTA 57.133 42.857 0.00 0.00 0.00 3.25
2609 4312 3.599412 GGTACGTGAGGTGCTTGAA 57.401 52.632 0.00 0.00 0.00 2.69
2740 4443 8.700644 GTGCGGATGTCTTATATGTTTAACTAG 58.299 37.037 0.00 0.00 0.00 2.57
2893 4597 1.317613 TTTGCCATGTGTGTGAGTCC 58.682 50.000 0.00 0.00 0.00 3.85
2894 4598 0.537143 TTGCCATGTGTGTGAGTCCC 60.537 55.000 0.00 0.00 0.00 4.46
2895 4599 1.073025 GCCATGTGTGTGAGTCCCA 59.927 57.895 0.00 0.00 0.00 4.37
2896 4600 0.322816 GCCATGTGTGTGAGTCCCAT 60.323 55.000 0.00 0.00 0.00 4.00
2897 4601 1.742761 CCATGTGTGTGAGTCCCATC 58.257 55.000 0.00 0.00 0.00 3.51
2898 4602 1.679944 CCATGTGTGTGAGTCCCATCC 60.680 57.143 0.00 0.00 0.00 3.51
2922 4626 6.382570 CCCATCTAAATCAATGGTTAAACCCA 59.617 38.462 0.00 0.00 40.76 4.51
2939 6849 4.553330 ACCCAGATCGTTACAGAACATT 57.447 40.909 0.00 0.00 35.06 2.71
2952 6862 8.073768 CGTTACAGAACATTCAAATGGTTAAGT 58.926 33.333 7.58 4.02 36.22 2.24
2953 6863 9.744468 GTTACAGAACATTCAAATGGTTAAGTT 57.256 29.630 7.58 0.00 36.22 2.66
2965 6875 9.743057 TCAAATGGTTAAGTTATTTGTGACTTG 57.257 29.630 14.00 0.00 40.72 3.16
2966 6876 8.977505 CAAATGGTTAAGTTATTTGTGACTTGG 58.022 33.333 0.00 0.00 37.15 3.61
2981 6891 2.435805 GACTTGGCATGATCCTAGGTCA 59.564 50.000 9.08 12.14 34.03 4.02
3002 6912 1.115467 CCATTCTACGCCTCAGGTCT 58.885 55.000 0.00 0.00 0.00 3.85
3005 6915 2.217510 TTCTACGCCTCAGGTCTCTT 57.782 50.000 0.00 0.00 0.00 2.85
3006 6916 1.752683 TCTACGCCTCAGGTCTCTTC 58.247 55.000 0.00 0.00 0.00 2.87
3007 6917 1.282447 TCTACGCCTCAGGTCTCTTCT 59.718 52.381 0.00 0.00 0.00 2.85
3008 6918 1.673920 CTACGCCTCAGGTCTCTTCTC 59.326 57.143 0.00 0.00 0.00 2.87
3046 6956 5.070685 CCTGCTTACCTAACCAAAACTCTT 58.929 41.667 0.00 0.00 0.00 2.85
3047 6957 5.048713 CCTGCTTACCTAACCAAAACTCTTG 60.049 44.000 0.00 0.00 0.00 3.02
3060 6970 0.107897 ACTCTTGACACGTGTTGCCA 60.108 50.000 24.26 13.68 0.00 4.92
3061 6971 1.013596 CTCTTGACACGTGTTGCCAA 58.986 50.000 24.26 20.08 0.00 4.52
3073 7039 0.939419 GTTGCCAAGCCAAAAGCAAG 59.061 50.000 0.00 0.00 45.19 4.01
3082 7048 1.338655 GCCAAAAGCAAGGGTTCGTTA 59.661 47.619 0.00 0.00 42.97 3.18
3100 7066 5.413499 TCGTTATTGCCTAGGACAACTAAC 58.587 41.667 14.75 19.88 0.00 2.34
3120 7086 8.668510 ACTAACTGGCATCTGAGTTTAATATG 57.331 34.615 0.00 0.00 34.28 1.78
3129 7095 8.912658 GCATCTGAGTTTAATATGCAAATCATG 58.087 33.333 0.00 0.00 41.94 3.07
3146 7112 6.975471 AATCATGGGATCCAAGATATACCA 57.025 37.500 15.23 0.00 40.46 3.25
3203 7170 9.486497 GATTGTCATCTGATAGCTGAAAGAATA 57.514 33.333 0.00 0.00 34.07 1.75
3284 7717 6.690194 ATCATGTTACAGAGGAAGATTTGC 57.310 37.500 0.00 0.00 0.00 3.68
3329 7762 4.644234 CCATGAATGGCTATGTTACACCAA 59.356 41.667 0.00 0.00 41.75 3.67
3350 7783 9.276590 CACCAATATAAATGATTCACTAGAGCA 57.723 33.333 0.00 0.00 0.00 4.26
3569 8014 2.962421 TGGACCCAAGAATGAAAACCAC 59.038 45.455 0.00 0.00 0.00 4.16
3578 8023 4.482990 AGAATGAAAACCACCACTCCAAT 58.517 39.130 0.00 0.00 0.00 3.16
3592 8037 2.497419 CAATCACACACGTGCGCG 60.497 61.111 19.78 19.78 43.28 6.86
3606 8051 3.055719 CGCGTTGAGCCCACCATT 61.056 61.111 0.00 0.00 44.76 3.16
3645 8090 6.434340 CCTTTCAAGGGAGCTTAGTGTTTTAT 59.566 38.462 0.00 0.00 42.66 1.40
3646 8091 7.610305 CCTTTCAAGGGAGCTTAGTGTTTTATA 59.390 37.037 0.00 0.00 42.66 0.98
3647 8092 9.178758 CTTTCAAGGGAGCTTAGTGTTTTATAT 57.821 33.333 0.00 0.00 0.00 0.86
3649 8094 9.832445 TTCAAGGGAGCTTAGTGTTTTATATAG 57.168 33.333 0.00 0.00 0.00 1.31
3650 8095 8.429641 TCAAGGGAGCTTAGTGTTTTATATAGG 58.570 37.037 0.00 0.00 0.00 2.57
3653 8098 8.011290 AGGGAGCTTAGTGTTTTATATAGGAGA 58.989 37.037 0.00 0.00 0.00 3.71
3654 8099 8.089597 GGGAGCTTAGTGTTTTATATAGGAGAC 58.910 40.741 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 740 1.787847 GATCCAGTTCGGTGCGTTG 59.212 57.895 0.00 0.00 35.57 4.10
72 741 1.736645 CGATCCAGTTCGGTGCGTT 60.737 57.895 0.00 0.00 35.50 4.84
765 1454 6.723298 ATCGTCTTGTCCAGATTCTAATCT 57.277 37.500 0.00 0.00 46.30 2.40
766 1455 9.134734 GAATATCGTCTTGTCCAGATTCTAATC 57.865 37.037 0.00 0.00 32.60 1.75
767 1456 8.642432 TGAATATCGTCTTGTCCAGATTCTAAT 58.358 33.333 0.00 0.00 32.60 1.73
768 1457 8.007405 TGAATATCGTCTTGTCCAGATTCTAA 57.993 34.615 0.00 0.00 32.60 2.10
769 1458 7.582667 TGAATATCGTCTTGTCCAGATTCTA 57.417 36.000 0.00 0.00 32.60 2.10
770 1459 6.471233 TGAATATCGTCTTGTCCAGATTCT 57.529 37.500 0.00 0.00 32.60 2.40
771 1460 7.539712 TTTGAATATCGTCTTGTCCAGATTC 57.460 36.000 0.00 0.00 32.60 2.52
772 1461 7.921786 TTTTGAATATCGTCTTGTCCAGATT 57.078 32.000 0.00 0.00 32.60 2.40
773 1462 7.921786 TTTTTGAATATCGTCTTGTCCAGAT 57.078 32.000 0.00 0.00 32.60 2.90
799 1488 5.611374 TCTCGTCTTGTCCAGATTCTTTTT 58.389 37.500 0.00 0.00 32.60 1.94
800 1489 5.215252 TCTCGTCTTGTCCAGATTCTTTT 57.785 39.130 0.00 0.00 32.60 2.27
801 1490 4.873746 TCTCGTCTTGTCCAGATTCTTT 57.126 40.909 0.00 0.00 32.60 2.52
802 1491 4.524714 TCTTCTCGTCTTGTCCAGATTCTT 59.475 41.667 0.00 0.00 32.60 2.52
1593 2340 1.811965 GCAGCAACATATGTGGTGACA 59.188 47.619 27.00 0.00 46.22 3.58
1882 3303 7.661847 CCTAAGGTGACCTATCAATTAATCCAC 59.338 40.741 3.68 0.00 36.31 4.02
2079 3515 1.176527 GAAATGCAGCAGCCAACCTA 58.823 50.000 0.00 0.00 41.13 3.08
2356 4058 5.627780 GCAATGGAAGTTGGTTTAGTTTACG 59.372 40.000 0.00 0.00 0.00 3.18
2357 4059 5.924254 GGCAATGGAAGTTGGTTTAGTTTAC 59.076 40.000 0.00 0.00 0.00 2.01
2362 4064 4.871933 AAGGCAATGGAAGTTGGTTTAG 57.128 40.909 0.00 0.00 0.00 1.85
2363 4065 5.365314 AGAAAAGGCAATGGAAGTTGGTTTA 59.635 36.000 0.00 0.00 0.00 2.01
2364 4066 4.164030 AGAAAAGGCAATGGAAGTTGGTTT 59.836 37.500 0.00 0.00 0.00 3.27
2421 4124 4.446311 GGCCTTCATCTCCTGGCTATTAAA 60.446 45.833 0.00 0.00 44.36 1.52
2425 4128 1.063183 GGCCTTCATCTCCTGGCTAT 58.937 55.000 0.00 0.00 44.36 2.97
2456 4159 0.618458 TCATTTCGCCTGCCCTAACT 59.382 50.000 0.00 0.00 0.00 2.24
2483 4186 3.119029 CCATGAAGCCAATGGTAACCAAG 60.119 47.826 0.00 0.00 36.95 3.61
2508 4211 2.553086 GACAACCGTACCAGTCAAACA 58.447 47.619 0.00 0.00 0.00 2.83
2520 4223 1.302511 GGAGCACATGGACAACCGT 60.303 57.895 0.00 0.00 39.42 4.83
2527 4230 1.911357 AGTCTGAATGGAGCACATGGA 59.089 47.619 0.00 0.00 40.44 3.41
2532 4235 2.935201 CAGCTAAGTCTGAATGGAGCAC 59.065 50.000 12.80 0.00 36.19 4.40
2609 4312 4.261072 GCATTGACATCTGAATCAAGCGAT 60.261 41.667 11.76 0.00 38.19 4.58
2740 4443 1.885887 TGCCACAAGCCAAATACAGAC 59.114 47.619 0.00 0.00 42.71 3.51
2743 4446 2.557924 CTCTTGCCACAAGCCAAATACA 59.442 45.455 2.41 0.00 42.71 2.29
2893 4597 7.838079 TTAACCATTGATTTAGATGGGATGG 57.162 36.000 7.24 0.00 45.67 3.51
2894 4598 8.143835 GGTTTAACCATTGATTTAGATGGGATG 58.856 37.037 9.56 0.00 45.67 3.51
2895 4599 7.290014 GGGTTTAACCATTGATTTAGATGGGAT 59.710 37.037 16.58 0.00 45.67 3.85
2896 4600 6.609616 GGGTTTAACCATTGATTTAGATGGGA 59.390 38.462 16.58 0.00 45.67 4.37
2897 4601 6.382570 TGGGTTTAACCATTGATTTAGATGGG 59.617 38.462 16.58 0.00 45.67 4.00
2898 4602 7.341769 TCTGGGTTTAACCATTGATTTAGATGG 59.658 37.037 16.58 1.02 46.57 3.51
2922 4626 6.655003 ACCATTTGAATGTTCTGTAACGATCT 59.345 34.615 0.00 0.00 38.53 2.75
2939 6849 9.743057 CAAGTCACAAATAACTTAACCATTTGA 57.257 29.630 11.93 0.00 40.49 2.69
2952 6862 5.263599 AGGATCATGCCAAGTCACAAATAA 58.736 37.500 0.00 0.00 0.00 1.40
2953 6863 4.858850 AGGATCATGCCAAGTCACAAATA 58.141 39.130 0.00 0.00 0.00 1.40
2954 6864 3.705051 AGGATCATGCCAAGTCACAAAT 58.295 40.909 0.00 0.00 0.00 2.32
2955 6865 3.159213 AGGATCATGCCAAGTCACAAA 57.841 42.857 0.00 0.00 0.00 2.83
2956 6866 2.885135 AGGATCATGCCAAGTCACAA 57.115 45.000 0.00 0.00 0.00 3.33
2957 6867 2.171237 CCTAGGATCATGCCAAGTCACA 59.829 50.000 1.05 0.00 0.00 3.58
2958 6868 2.171448 ACCTAGGATCATGCCAAGTCAC 59.829 50.000 17.98 0.00 0.00 3.67
2959 6869 2.435805 GACCTAGGATCATGCCAAGTCA 59.564 50.000 17.98 0.00 0.00 3.41
2960 6870 2.435805 TGACCTAGGATCATGCCAAGTC 59.564 50.000 17.98 0.00 0.00 3.01
2961 6871 2.481441 TGACCTAGGATCATGCCAAGT 58.519 47.619 17.98 0.00 0.00 3.16
2962 6872 3.558746 GGATGACCTAGGATCATGCCAAG 60.559 52.174 23.38 0.00 38.57 3.61
2963 6873 2.373169 GGATGACCTAGGATCATGCCAA 59.627 50.000 23.38 1.97 38.57 4.52
2964 6874 1.980765 GGATGACCTAGGATCATGCCA 59.019 52.381 23.38 8.65 38.57 4.92
2965 6875 1.980765 TGGATGACCTAGGATCATGCC 59.019 52.381 27.14 23.59 42.48 4.40
2966 6876 3.996921 ATGGATGACCTAGGATCATGC 57.003 47.619 25.29 25.29 43.20 4.06
2981 6891 1.689273 GACCTGAGGCGTAGAATGGAT 59.311 52.381 0.00 0.00 0.00 3.41
3002 6912 4.410883 AGGAGACGGAGAATAGAGAGAAGA 59.589 45.833 0.00 0.00 0.00 2.87
3005 6915 3.746114 GCAGGAGACGGAGAATAGAGAGA 60.746 52.174 0.00 0.00 0.00 3.10
3006 6916 2.552315 GCAGGAGACGGAGAATAGAGAG 59.448 54.545 0.00 0.00 0.00 3.20
3007 6917 2.173782 AGCAGGAGACGGAGAATAGAGA 59.826 50.000 0.00 0.00 0.00 3.10
3008 6918 2.582052 AGCAGGAGACGGAGAATAGAG 58.418 52.381 0.00 0.00 0.00 2.43
3060 6970 0.389025 CGAACCCTTGCTTTTGGCTT 59.611 50.000 0.00 0.00 42.39 4.35
3061 6971 0.755327 ACGAACCCTTGCTTTTGGCT 60.755 50.000 0.00 0.00 42.39 4.75
3073 7039 2.093341 TGTCCTAGGCAATAACGAACCC 60.093 50.000 2.96 0.00 0.00 4.11
3076 7042 4.546829 AGTTGTCCTAGGCAATAACGAA 57.453 40.909 17.84 1.74 0.00 3.85
3082 7048 3.622455 GCCAGTTAGTTGTCCTAGGCAAT 60.622 47.826 17.84 11.38 35.54 3.56
3100 7066 6.381481 TTGCATATTAAACTCAGATGCCAG 57.619 37.500 2.96 0.00 41.76 4.85
3120 7086 6.096001 GGTATATCTTGGATCCCATGATTTGC 59.904 42.308 9.90 12.69 43.05 3.68
3129 7095 4.767409 GCCTTTTGGTATATCTTGGATCCC 59.233 45.833 9.90 0.00 42.99 3.85
3146 7112 1.898574 CCACTCTGCCACGCCTTTT 60.899 57.895 0.00 0.00 0.00 2.27
3284 7717 0.738389 ACGTGTGGCAACTTTCTTGG 59.262 50.000 0.00 0.00 37.61 3.61
3350 7783 0.869730 ACAGAAAAACCGCGCGTATT 59.130 45.000 29.95 19.63 0.00 1.89
3401 7846 1.299850 GCCAAGCGAACCAACCAAC 60.300 57.895 0.00 0.00 0.00 3.77
3569 8014 3.305709 ACGTGTGTGATTGGAGTGG 57.694 52.632 0.00 0.00 0.00 4.00
3592 8037 1.818674 CTGGTTAATGGTGGGCTCAAC 59.181 52.381 0.00 0.00 0.00 3.18
3606 8051 1.286248 GAAAGGGAGCCTCCTGGTTA 58.714 55.000 11.29 0.00 37.20 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.