Multiple sequence alignment - TraesCS3B01G067500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G067500 chr3B 100.000 1926 0 0 940 2865 40163776 40165701 0.000000e+00 3557.0
1 TraesCS3B01G067500 chr3B 100.000 679 0 0 1 679 40162837 40163515 0.000000e+00 1254.0
2 TraesCS3B01G067500 chr3B 81.045 670 92 26 2207 2865 40232037 40232682 4.260000e-138 501.0
3 TraesCS3B01G067500 chr3B 79.421 622 63 30 2023 2642 40193413 40193971 2.080000e-101 379.0
4 TraesCS3B01G067500 chr3B 93.050 259 15 3 124 380 42867926 42867669 2.690000e-100 375.0
5 TraesCS3B01G067500 chr3B 91.765 255 19 2 123 376 809057891 809058144 1.260000e-93 353.0
6 TraesCS3B01G067500 chr3B 85.944 249 31 2 971 1219 40192327 40192571 2.190000e-66 263.0
7 TraesCS3B01G067500 chr3B 90.517 116 6 5 265 377 29758649 29758536 6.400000e-32 148.0
8 TraesCS3B01G067500 chr3B 85.612 139 10 8 37 174 809057751 809057880 1.380000e-28 137.0
9 TraesCS3B01G067500 chr3D 92.872 1936 65 26 940 2865 22727452 22725580 0.000000e+00 2743.0
10 TraesCS3B01G067500 chr3D 82.090 670 89 24 2207 2865 23054639 23055288 6.980000e-151 544.0
11 TraesCS3B01G067500 chr3D 83.013 624 59 28 2023 2642 22930184 22930764 3.270000e-144 521.0
12 TraesCS3B01G067500 chr3D 78.990 495 64 24 2207 2697 22384400 22384858 4.640000e-78 302.0
13 TraesCS3B01G067500 chr3D 86.585 246 32 1 974 1219 22929016 22929260 1.310000e-68 270.0
14 TraesCS3B01G067500 chr3D 84.266 286 20 6 376 661 22743847 22743587 3.660000e-64 255.0
15 TraesCS3B01G067500 chr3D 94.937 158 8 0 522 679 22727637 22727480 6.130000e-62 248.0
16 TraesCS3B01G067500 chr4A 94.098 305 17 1 47 350 642667854 642667550 2.010000e-126 462.0
17 TraesCS3B01G067500 chr4B 91.732 254 20 1 123 375 450043108 450043361 4.540000e-93 351.0
18 TraesCS3B01G067500 chr4B 92.135 89 5 2 37 124 450042990 450043077 1.080000e-24 124.0
19 TraesCS3B01G067500 chr1A 90.551 254 20 2 124 376 535771659 535771909 1.650000e-87 333.0
20 TraesCS3B01G067500 chr1A 96.154 78 2 1 47 124 535771554 535771630 3.000000e-25 126.0
21 TraesCS3B01G067500 chr1A 86.486 74 4 2 2627 2696 526135531 526135460 3.060000e-10 76.8
22 TraesCS3B01G067500 chr2D 84.592 331 34 13 47 375 639227358 639227673 2.140000e-81 313.0
23 TraesCS3B01G067500 chr3A 87.692 260 22 8 124 377 21321432 21321687 7.760000e-76 294.0
24 TraesCS3B01G067500 chr3A 89.381 113 11 1 266 377 594498016 594498128 1.070000e-29 141.0
25 TraesCS3B01G067500 chr3A 93.590 78 4 1 47 124 21321327 21321403 6.490000e-22 115.0
26 TraesCS3B01G067500 chr6A 87.160 257 23 6 124 376 215102446 215102696 1.680000e-72 283.0
27 TraesCS3B01G067500 chr6A 90.909 77 2 1 48 124 215102346 215102417 6.530000e-17 99.0
28 TraesCS3B01G067500 chr6A 84.000 75 6 2 2627 2697 44077066 44077138 1.840000e-07 67.6
29 TraesCS3B01G067500 chr7D 87.069 232 24 4 123 352 540882107 540882334 1.020000e-64 257.0
30 TraesCS3B01G067500 chr5D 93.827 81 2 1 47 124 525315817 525315737 5.010000e-23 119.0
31 TraesCS3B01G067500 chr5D 93.590 78 5 0 47 124 110602914 110602991 1.800000e-22 117.0
32 TraesCS3B01G067500 chr7A 86.667 75 4 2 2627 2697 17964209 17964137 8.510000e-11 78.7
33 TraesCS3B01G067500 chr7A 86.667 75 4 2 2627 2697 35743285 35743357 8.510000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G067500 chr3B 40162837 40165701 2864 False 2405.5 3557 100.0000 1 2865 2 chr3B.!!$F2 2864
1 TraesCS3B01G067500 chr3B 40232037 40232682 645 False 501.0 501 81.0450 2207 2865 1 chr3B.!!$F1 658
2 TraesCS3B01G067500 chr3B 40192327 40193971 1644 False 321.0 379 82.6825 971 2642 2 chr3B.!!$F3 1671
3 TraesCS3B01G067500 chr3D 22725580 22727637 2057 True 1495.5 2743 93.9045 522 2865 2 chr3D.!!$R2 2343
4 TraesCS3B01G067500 chr3D 23054639 23055288 649 False 544.0 544 82.0900 2207 2865 1 chr3D.!!$F2 658
5 TraesCS3B01G067500 chr3D 22929016 22930764 1748 False 395.5 521 84.7990 974 2642 2 chr3D.!!$F3 1668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 211 0.036448 TAGATCGGACTAGGGCTCGG 59.964 60.0 0.0 0.0 0.0 4.63 F
309 310 0.038343 CAGACATTGGCCCAAAACGG 60.038 55.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 2049 0.107752 CTCTGCCTCCTCCTTCTTGC 60.108 60.0 0.00 0.0 0.0 4.01 R
1957 2183 1.826385 AAAGATTGAGGCCACCGAAG 58.174 50.0 5.01 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 9.663904 CATTGTATAAATTATCTGTGTTTCCGG 57.336 33.333 0.00 0.00 0.00 5.14
58 59 7.795482 TGTATAAATTATCTGTGTTTCCGGG 57.205 36.000 0.00 0.00 0.00 5.73
59 60 5.767816 ATAAATTATCTGTGTTTCCGGGC 57.232 39.130 0.00 0.00 0.00 6.13
60 61 2.799126 ATTATCTGTGTTTCCGGGCA 57.201 45.000 0.00 0.00 0.00 5.36
61 62 2.107950 TTATCTGTGTTTCCGGGCAG 57.892 50.000 0.00 3.14 0.00 4.85
62 63 0.251916 TATCTGTGTTTCCGGGCAGG 59.748 55.000 0.00 0.00 42.97 4.85
71 72 3.200522 CCGGGCAGGAAATGAAGC 58.799 61.111 0.00 0.00 45.00 3.86
72 73 1.678635 CCGGGCAGGAAATGAAGCA 60.679 57.895 0.00 0.00 45.00 3.91
73 74 1.250154 CCGGGCAGGAAATGAAGCAA 61.250 55.000 0.00 0.00 45.00 3.91
74 75 0.819582 CGGGCAGGAAATGAAGCAAT 59.180 50.000 0.00 0.00 0.00 3.56
75 76 1.202336 CGGGCAGGAAATGAAGCAATC 60.202 52.381 0.00 0.00 0.00 2.67
76 77 1.826720 GGGCAGGAAATGAAGCAATCA 59.173 47.619 0.00 0.00 43.67 2.57
77 78 2.417787 GGGCAGGAAATGAAGCAATCAC 60.418 50.000 0.00 0.00 41.93 3.06
78 79 2.494870 GGCAGGAAATGAAGCAATCACT 59.505 45.455 0.00 0.00 41.93 3.41
79 80 3.696051 GGCAGGAAATGAAGCAATCACTA 59.304 43.478 0.00 0.00 41.93 2.74
80 81 4.158394 GGCAGGAAATGAAGCAATCACTAA 59.842 41.667 0.00 0.00 41.93 2.24
81 82 5.336690 GGCAGGAAATGAAGCAATCACTAAA 60.337 40.000 0.00 0.00 41.93 1.85
82 83 5.803967 GCAGGAAATGAAGCAATCACTAAAG 59.196 40.000 0.00 0.00 41.93 1.85
83 84 5.803967 CAGGAAATGAAGCAATCACTAAAGC 59.196 40.000 0.00 0.00 41.93 3.51
84 85 5.477984 AGGAAATGAAGCAATCACTAAAGCA 59.522 36.000 0.00 0.00 41.93 3.91
85 86 6.015180 AGGAAATGAAGCAATCACTAAAGCAA 60.015 34.615 0.00 0.00 41.93 3.91
86 87 6.646240 GGAAATGAAGCAATCACTAAAGCAAA 59.354 34.615 0.00 0.00 41.93 3.68
87 88 7.171337 GGAAATGAAGCAATCACTAAAGCAAAA 59.829 33.333 0.00 0.00 41.93 2.44
88 89 8.436046 AAATGAAGCAATCACTAAAGCAAAAA 57.564 26.923 0.00 0.00 41.93 1.94
109 110 6.769608 AAAATCAAAGGAAACGAAGCAATC 57.230 33.333 0.00 0.00 0.00 2.67
110 111 5.452078 AATCAAAGGAAACGAAGCAATCA 57.548 34.783 0.00 0.00 0.00 2.57
111 112 4.909696 TCAAAGGAAACGAAGCAATCAA 57.090 36.364 0.00 0.00 0.00 2.57
112 113 5.255710 TCAAAGGAAACGAAGCAATCAAA 57.744 34.783 0.00 0.00 0.00 2.69
113 114 5.655488 TCAAAGGAAACGAAGCAATCAAAA 58.345 33.333 0.00 0.00 0.00 2.44
114 115 6.102663 TCAAAGGAAACGAAGCAATCAAAAA 58.897 32.000 0.00 0.00 0.00 1.94
115 116 5.966636 AAGGAAACGAAGCAATCAAAAAC 57.033 34.783 0.00 0.00 0.00 2.43
116 117 4.041723 AGGAAACGAAGCAATCAAAAACG 58.958 39.130 0.00 0.00 0.00 3.60
117 118 4.039032 GGAAACGAAGCAATCAAAAACGA 58.961 39.130 0.00 0.00 0.00 3.85
118 119 4.146443 GGAAACGAAGCAATCAAAAACGAG 59.854 41.667 0.00 0.00 0.00 4.18
119 120 4.545823 AACGAAGCAATCAAAAACGAGA 57.454 36.364 0.00 0.00 0.00 4.04
120 121 3.873529 ACGAAGCAATCAAAAACGAGAC 58.126 40.909 0.00 0.00 0.00 3.36
121 122 3.311322 ACGAAGCAATCAAAAACGAGACA 59.689 39.130 0.00 0.00 0.00 3.41
122 123 4.201871 ACGAAGCAATCAAAAACGAGACAA 60.202 37.500 0.00 0.00 0.00 3.18
123 124 4.144731 CGAAGCAATCAAAAACGAGACAAC 59.855 41.667 0.00 0.00 0.00 3.32
124 125 3.617669 AGCAATCAAAAACGAGACAACG 58.382 40.909 0.00 0.00 39.31 4.10
125 126 2.719046 GCAATCAAAAACGAGACAACGG 59.281 45.455 0.00 0.00 37.61 4.44
126 127 2.681152 ATCAAAAACGAGACAACGGC 57.319 45.000 0.00 0.00 37.61 5.68
127 128 0.302288 TCAAAAACGAGACAACGGCG 59.698 50.000 4.80 4.80 37.61 6.46
128 129 1.010462 AAAAACGAGACAACGGCGC 60.010 52.632 6.90 0.00 37.61 6.53
129 130 1.707239 AAAAACGAGACAACGGCGCA 61.707 50.000 10.83 0.00 37.61 6.09
130 131 2.369477 AAAACGAGACAACGGCGCAC 62.369 55.000 10.83 0.00 37.61 5.34
131 132 4.578898 ACGAGACAACGGCGCACA 62.579 61.111 10.83 0.00 37.61 4.57
132 133 3.112075 CGAGACAACGGCGCACAT 61.112 61.111 10.83 0.00 0.00 3.21
133 134 2.778679 GAGACAACGGCGCACATC 59.221 61.111 10.83 0.00 0.00 3.06
134 135 1.738099 GAGACAACGGCGCACATCT 60.738 57.895 10.83 4.87 0.00 2.90
135 136 1.959899 GAGACAACGGCGCACATCTG 61.960 60.000 10.83 0.79 0.00 2.90
136 137 2.280797 ACAACGGCGCACATCTGT 60.281 55.556 10.83 1.50 0.00 3.41
137 138 2.227968 GACAACGGCGCACATCTGTC 62.228 60.000 10.83 10.46 0.00 3.51
138 139 2.030412 AACGGCGCACATCTGTCA 59.970 55.556 10.83 0.00 0.00 3.58
139 140 2.029288 AACGGCGCACATCTGTCAG 61.029 57.895 10.83 0.00 0.00 3.51
140 141 2.433145 CGGCGCACATCTGTCAGT 60.433 61.111 10.83 0.00 0.00 3.41
141 142 2.029288 CGGCGCACATCTGTCAGTT 61.029 57.895 10.83 0.00 0.00 3.16
142 143 1.790387 GGCGCACATCTGTCAGTTC 59.210 57.895 10.83 0.00 0.00 3.01
143 144 1.417592 GCGCACATCTGTCAGTTCG 59.582 57.895 0.30 0.00 0.00 3.95
144 145 1.284982 GCGCACATCTGTCAGTTCGT 61.285 55.000 0.30 0.00 0.00 3.85
145 146 0.710567 CGCACATCTGTCAGTTCGTC 59.289 55.000 0.00 0.00 0.00 4.20
146 147 1.667177 CGCACATCTGTCAGTTCGTCT 60.667 52.381 0.00 0.00 0.00 4.18
147 148 1.989165 GCACATCTGTCAGTTCGTCTC 59.011 52.381 0.00 0.00 0.00 3.36
148 149 2.245942 CACATCTGTCAGTTCGTCTCG 58.754 52.381 0.00 0.00 0.00 4.04
149 150 1.200252 ACATCTGTCAGTTCGTCTCGG 59.800 52.381 0.00 0.00 0.00 4.63
150 151 0.811915 ATCTGTCAGTTCGTCTCGGG 59.188 55.000 0.00 0.00 0.00 5.14
151 152 0.250597 TCTGTCAGTTCGTCTCGGGA 60.251 55.000 0.00 0.00 0.00 5.14
152 153 0.596577 CTGTCAGTTCGTCTCGGGAA 59.403 55.000 0.00 0.00 0.00 3.97
153 154 1.000607 CTGTCAGTTCGTCTCGGGAAA 60.001 52.381 0.00 0.00 0.00 3.13
154 155 1.000607 TGTCAGTTCGTCTCGGGAAAG 60.001 52.381 0.00 0.00 0.00 2.62
155 156 1.268899 GTCAGTTCGTCTCGGGAAAGA 59.731 52.381 0.00 0.00 0.00 2.52
156 157 2.094649 GTCAGTTCGTCTCGGGAAAGAT 60.095 50.000 0.00 0.00 0.00 2.40
157 158 2.163815 TCAGTTCGTCTCGGGAAAGATC 59.836 50.000 0.00 0.00 0.00 2.75
158 159 1.132643 AGTTCGTCTCGGGAAAGATCG 59.867 52.381 0.00 0.00 0.00 3.69
159 160 1.135460 GTTCGTCTCGGGAAAGATCGT 60.135 52.381 0.00 0.00 0.00 3.73
160 161 2.028420 TCGTCTCGGGAAAGATCGTA 57.972 50.000 0.00 0.00 0.00 3.43
161 162 1.938577 TCGTCTCGGGAAAGATCGTAG 59.061 52.381 0.00 0.00 0.00 3.51
162 163 1.938577 CGTCTCGGGAAAGATCGTAGA 59.061 52.381 0.00 0.00 45.75 2.59
163 164 2.548904 CGTCTCGGGAAAGATCGTAGAT 59.451 50.000 0.00 0.00 45.12 1.98
164 165 3.003482 CGTCTCGGGAAAGATCGTAGATT 59.997 47.826 0.00 0.00 45.12 2.40
165 166 4.291783 GTCTCGGGAAAGATCGTAGATTG 58.708 47.826 0.00 0.00 45.12 2.67
166 167 4.036498 GTCTCGGGAAAGATCGTAGATTGA 59.964 45.833 0.00 0.00 45.12 2.57
167 168 4.827835 TCTCGGGAAAGATCGTAGATTGAT 59.172 41.667 0.00 0.00 45.12 2.57
168 169 5.048643 TCTCGGGAAAGATCGTAGATTGATC 60.049 44.000 0.00 0.00 45.12 2.92
169 170 3.914966 CGGGAAAGATCGTAGATTGATCG 59.085 47.826 0.00 0.00 45.44 3.69
170 171 4.320275 CGGGAAAGATCGTAGATTGATCGA 60.320 45.833 0.00 0.00 45.44 3.59
171 172 5.620205 CGGGAAAGATCGTAGATTGATCGAT 60.620 44.000 0.00 0.00 45.44 3.59
172 173 5.574830 GGGAAAGATCGTAGATTGATCGATG 59.425 44.000 0.54 0.00 45.44 3.84
173 174 5.574830 GGAAAGATCGTAGATTGATCGATGG 59.425 44.000 0.54 0.00 45.44 3.51
174 175 5.713792 AAGATCGTAGATTGATCGATGGT 57.286 39.130 0.54 0.00 45.44 3.55
175 176 5.713792 AGATCGTAGATTGATCGATGGTT 57.286 39.130 0.54 0.00 45.44 3.67
176 177 5.704888 AGATCGTAGATTGATCGATGGTTC 58.295 41.667 0.54 0.00 45.44 3.62
177 178 4.911514 TCGTAGATTGATCGATGGTTCA 57.088 40.909 0.54 0.00 0.00 3.18
178 179 5.257082 TCGTAGATTGATCGATGGTTCAA 57.743 39.130 0.54 1.38 36.57 2.69
179 180 5.842907 TCGTAGATTGATCGATGGTTCAAT 58.157 37.500 0.54 7.21 42.45 2.57
180 181 6.977213 TCGTAGATTGATCGATGGTTCAATA 58.023 36.000 0.54 0.00 40.77 1.90
181 182 7.084486 TCGTAGATTGATCGATGGTTCAATAG 58.916 38.462 0.54 0.84 40.77 1.73
182 183 6.309009 CGTAGATTGATCGATGGTTCAATAGG 59.691 42.308 0.54 0.00 40.77 2.57
183 184 6.179906 AGATTGATCGATGGTTCAATAGGT 57.820 37.500 0.54 0.00 40.77 3.08
184 185 6.595682 AGATTGATCGATGGTTCAATAGGTT 58.404 36.000 0.54 0.00 40.77 3.50
185 186 6.484643 AGATTGATCGATGGTTCAATAGGTTG 59.515 38.462 0.54 0.00 40.77 3.77
186 187 5.097742 TGATCGATGGTTCAATAGGTTGT 57.902 39.130 0.54 0.00 36.69 3.32
187 188 4.875536 TGATCGATGGTTCAATAGGTTGTG 59.124 41.667 0.54 0.00 36.69 3.33
188 189 4.280436 TCGATGGTTCAATAGGTTGTGT 57.720 40.909 0.00 0.00 36.69 3.72
189 190 5.408880 TCGATGGTTCAATAGGTTGTGTA 57.591 39.130 0.00 0.00 36.69 2.90
190 191 5.416083 TCGATGGTTCAATAGGTTGTGTAG 58.584 41.667 0.00 0.00 36.69 2.74
191 192 5.046878 TCGATGGTTCAATAGGTTGTGTAGT 60.047 40.000 0.00 0.00 36.69 2.73
192 193 6.153170 TCGATGGTTCAATAGGTTGTGTAGTA 59.847 38.462 0.00 0.00 36.69 1.82
193 194 6.475727 CGATGGTTCAATAGGTTGTGTAGTAG 59.524 42.308 0.00 0.00 36.69 2.57
194 195 6.921486 TGGTTCAATAGGTTGTGTAGTAGA 57.079 37.500 0.00 0.00 36.69 2.59
195 196 7.490657 TGGTTCAATAGGTTGTGTAGTAGAT 57.509 36.000 0.00 0.00 36.69 1.98
196 197 7.553334 TGGTTCAATAGGTTGTGTAGTAGATC 58.447 38.462 0.00 0.00 36.69 2.75
197 198 6.696148 GGTTCAATAGGTTGTGTAGTAGATCG 59.304 42.308 0.00 0.00 36.69 3.69
198 199 6.387041 TCAATAGGTTGTGTAGTAGATCGG 57.613 41.667 0.00 0.00 36.69 4.18
199 200 6.124340 TCAATAGGTTGTGTAGTAGATCGGA 58.876 40.000 0.00 0.00 36.69 4.55
200 201 6.039047 TCAATAGGTTGTGTAGTAGATCGGAC 59.961 42.308 0.00 0.00 36.69 4.79
201 202 3.965694 AGGTTGTGTAGTAGATCGGACT 58.034 45.455 8.20 8.20 0.00 3.85
202 203 5.108187 AGGTTGTGTAGTAGATCGGACTA 57.892 43.478 6.47 6.47 0.00 2.59
203 204 5.124645 AGGTTGTGTAGTAGATCGGACTAG 58.875 45.833 9.93 0.00 30.08 2.57
204 205 4.275443 GGTTGTGTAGTAGATCGGACTAGG 59.725 50.000 9.93 0.00 30.08 3.02
205 206 4.082665 TGTGTAGTAGATCGGACTAGGG 57.917 50.000 9.93 0.00 30.08 3.53
206 207 2.813172 GTGTAGTAGATCGGACTAGGGC 59.187 54.545 9.93 2.00 30.08 5.19
207 208 2.709934 TGTAGTAGATCGGACTAGGGCT 59.290 50.000 9.93 0.00 30.08 5.19
208 209 2.572209 AGTAGATCGGACTAGGGCTC 57.428 55.000 1.82 0.00 0.00 4.70
209 210 1.158434 GTAGATCGGACTAGGGCTCG 58.842 60.000 0.00 0.00 0.00 5.03
210 211 0.036448 TAGATCGGACTAGGGCTCGG 59.964 60.000 0.00 0.00 0.00 4.63
211 212 1.528776 GATCGGACTAGGGCTCGGT 60.529 63.158 0.00 0.00 0.00 4.69
212 213 1.076192 ATCGGACTAGGGCTCGGTT 60.076 57.895 0.00 0.00 0.00 4.44
213 214 1.108132 ATCGGACTAGGGCTCGGTTC 61.108 60.000 0.00 0.00 0.00 3.62
214 215 2.050350 CGGACTAGGGCTCGGTTCA 61.050 63.158 0.00 0.00 0.00 3.18
215 216 1.817209 GGACTAGGGCTCGGTTCAG 59.183 63.158 0.00 0.00 0.00 3.02
216 217 1.677637 GGACTAGGGCTCGGTTCAGG 61.678 65.000 0.00 0.00 0.00 3.86
217 218 0.683504 GACTAGGGCTCGGTTCAGGA 60.684 60.000 0.00 0.00 0.00 3.86
218 219 0.971447 ACTAGGGCTCGGTTCAGGAC 60.971 60.000 0.00 0.00 0.00 3.85
219 220 0.970937 CTAGGGCTCGGTTCAGGACA 60.971 60.000 0.00 0.00 0.00 4.02
220 221 0.325296 TAGGGCTCGGTTCAGGACAT 60.325 55.000 0.00 0.00 0.00 3.06
221 222 0.325296 AGGGCTCGGTTCAGGACATA 60.325 55.000 0.00 0.00 0.00 2.29
222 223 0.759346 GGGCTCGGTTCAGGACATAT 59.241 55.000 0.00 0.00 0.00 1.78
223 224 1.141053 GGGCTCGGTTCAGGACATATT 59.859 52.381 0.00 0.00 0.00 1.28
224 225 2.213499 GGCTCGGTTCAGGACATATTG 58.787 52.381 0.00 0.00 0.00 1.90
225 226 2.213499 GCTCGGTTCAGGACATATTGG 58.787 52.381 0.00 0.00 0.00 3.16
226 227 2.158957 GCTCGGTTCAGGACATATTGGA 60.159 50.000 0.00 0.00 0.00 3.53
227 228 3.722147 CTCGGTTCAGGACATATTGGAG 58.278 50.000 0.00 0.00 0.00 3.86
228 229 2.158957 TCGGTTCAGGACATATTGGAGC 60.159 50.000 0.00 0.00 0.00 4.70
229 230 2.419990 CGGTTCAGGACATATTGGAGCA 60.420 50.000 0.00 0.00 0.00 4.26
230 231 3.209410 GGTTCAGGACATATTGGAGCAG 58.791 50.000 0.00 0.00 0.00 4.24
231 232 3.209410 GTTCAGGACATATTGGAGCAGG 58.791 50.000 0.00 0.00 0.00 4.85
232 233 1.141657 TCAGGACATATTGGAGCAGGC 59.858 52.381 0.00 0.00 0.00 4.85
233 234 0.475906 AGGACATATTGGAGCAGGCC 59.524 55.000 0.00 0.00 0.00 5.19
234 235 0.475906 GGACATATTGGAGCAGGCCT 59.524 55.000 0.00 0.00 0.00 5.19
235 236 1.699634 GGACATATTGGAGCAGGCCTA 59.300 52.381 3.98 0.00 0.00 3.93
236 237 2.289945 GGACATATTGGAGCAGGCCTAG 60.290 54.545 3.98 0.47 0.00 3.02
237 238 2.370189 GACATATTGGAGCAGGCCTAGT 59.630 50.000 3.98 0.00 0.00 2.57
238 239 2.780010 ACATATTGGAGCAGGCCTAGTT 59.220 45.455 3.98 0.00 0.00 2.24
239 240 3.181450 ACATATTGGAGCAGGCCTAGTTC 60.181 47.826 3.98 7.74 0.00 3.01
240 241 0.179000 ATTGGAGCAGGCCTAGTTCG 59.821 55.000 3.98 0.00 0.00 3.95
241 242 0.902984 TTGGAGCAGGCCTAGTTCGA 60.903 55.000 3.98 2.13 0.00 3.71
242 243 0.902984 TGGAGCAGGCCTAGTTCGAA 60.903 55.000 3.98 0.00 0.00 3.71
243 244 0.179097 GGAGCAGGCCTAGTTCGAAG 60.179 60.000 3.98 0.00 0.00 3.79
244 245 0.179097 GAGCAGGCCTAGTTCGAAGG 60.179 60.000 3.98 0.00 37.17 3.46
245 246 0.614979 AGCAGGCCTAGTTCGAAGGA 60.615 55.000 3.98 0.00 36.08 3.36
246 247 0.179097 GCAGGCCTAGTTCGAAGGAG 60.179 60.000 3.98 2.75 36.08 3.69
247 248 0.461961 CAGGCCTAGTTCGAAGGAGG 59.538 60.000 17.44 17.44 36.08 4.30
250 251 1.437986 CCTAGTTCGAAGGAGGCCG 59.562 63.158 11.37 0.00 36.08 6.13
251 252 1.227002 CTAGTTCGAAGGAGGCCGC 60.227 63.158 0.00 0.00 0.00 6.53
252 253 2.938539 CTAGTTCGAAGGAGGCCGCG 62.939 65.000 0.00 0.00 0.00 6.46
257 258 4.893601 GAAGGAGGCCGCGGCTAC 62.894 72.222 45.23 35.87 38.98 3.58
265 266 3.053291 CCGCGGCTACCAGCAAAA 61.053 61.111 14.67 0.00 44.75 2.44
266 267 2.622011 CCGCGGCTACCAGCAAAAA 61.622 57.895 14.67 0.00 44.75 1.94
290 291 9.456147 AAAAAGGGCCCAAAACAAATAATATAC 57.544 29.630 27.56 0.00 0.00 1.47
291 292 7.741554 AAGGGCCCAAAACAAATAATATACA 57.258 32.000 27.56 0.00 0.00 2.29
292 293 7.360113 AGGGCCCAAAACAAATAATATACAG 57.640 36.000 27.56 0.00 0.00 2.74
293 294 7.129425 AGGGCCCAAAACAAATAATATACAGA 58.871 34.615 27.56 0.00 0.00 3.41
294 295 7.069455 AGGGCCCAAAACAAATAATATACAGAC 59.931 37.037 27.56 0.00 0.00 3.51
295 296 7.147811 GGGCCCAAAACAAATAATATACAGACA 60.148 37.037 19.95 0.00 0.00 3.41
296 297 8.421002 GGCCCAAAACAAATAATATACAGACAT 58.579 33.333 0.00 0.00 0.00 3.06
297 298 9.816354 GCCCAAAACAAATAATATACAGACATT 57.184 29.630 0.00 0.00 0.00 2.71
301 302 9.816354 AAAACAAATAATATACAGACATTGGCC 57.184 29.630 0.00 0.00 0.00 5.36
302 303 7.524717 ACAAATAATATACAGACATTGGCCC 57.475 36.000 0.00 0.00 0.00 5.80
303 304 7.066142 ACAAATAATATACAGACATTGGCCCA 58.934 34.615 0.00 0.00 0.00 5.36
304 305 7.563188 ACAAATAATATACAGACATTGGCCCAA 59.437 33.333 0.00 0.00 0.00 4.12
305 306 8.420222 CAAATAATATACAGACATTGGCCCAAA 58.580 33.333 0.00 0.00 0.00 3.28
306 307 8.546083 AATAATATACAGACATTGGCCCAAAA 57.454 30.769 0.00 0.00 0.00 2.44
307 308 5.852282 ATATACAGACATTGGCCCAAAAC 57.148 39.130 0.00 0.00 0.00 2.43
308 309 0.673437 ACAGACATTGGCCCAAAACG 59.327 50.000 0.00 0.00 0.00 3.60
309 310 0.038343 CAGACATTGGCCCAAAACGG 60.038 55.000 0.00 0.00 0.00 4.44
327 328 1.233080 GGGGGCCCCTAGAATTTGG 59.767 63.158 39.92 0.00 41.34 3.28
328 329 1.233080 GGGGCCCCTAGAATTTGGG 59.767 63.158 35.49 0.00 42.98 4.12
333 334 1.233080 CCCTAGAATTTGGGGGCCC 59.767 63.158 15.76 15.76 39.76 5.80
334 335 1.296662 CCCTAGAATTTGGGGGCCCT 61.297 60.000 24.38 0.28 39.76 5.19
335 336 0.106015 CCTAGAATTTGGGGGCCCTG 60.106 60.000 24.38 1.70 36.94 4.45
336 337 0.631212 CTAGAATTTGGGGGCCCTGT 59.369 55.000 24.38 2.58 36.94 4.00
337 338 0.334676 TAGAATTTGGGGGCCCTGTG 59.665 55.000 24.38 0.00 36.94 3.66
338 339 2.607442 AATTTGGGGGCCCTGTGC 60.607 61.111 24.38 5.99 40.16 4.57
366 367 4.738998 CCCGCACATGCCCTTGGA 62.739 66.667 0.00 0.00 37.91 3.53
367 368 3.443045 CCGCACATGCCCTTGGAC 61.443 66.667 0.00 0.00 37.91 4.02
368 369 3.803082 CGCACATGCCCTTGGACG 61.803 66.667 0.00 0.00 37.91 4.79
369 370 3.443045 GCACATGCCCTTGGACGG 61.443 66.667 0.00 0.00 34.31 4.79
377 378 4.410400 CCTTGGACGGGCCTGGTC 62.410 72.222 18.00 16.96 37.63 4.02
378 379 3.322466 CTTGGACGGGCCTGGTCT 61.322 66.667 18.00 0.00 37.63 3.85
379 380 2.852075 TTGGACGGGCCTGGTCTT 60.852 61.111 18.00 0.00 37.63 3.01
380 381 2.804828 CTTGGACGGGCCTGGTCTTC 62.805 65.000 18.00 3.68 37.63 2.87
381 382 3.003763 GGACGGGCCTGGTCTTCT 61.004 66.667 18.00 0.00 34.82 2.85
382 383 1.684734 GGACGGGCCTGGTCTTCTA 60.685 63.158 18.00 0.00 34.82 2.10
383 384 1.262640 GGACGGGCCTGGTCTTCTAA 61.263 60.000 18.00 0.00 34.82 2.10
384 385 0.108281 GACGGGCCTGGTCTTCTAAC 60.108 60.000 18.00 0.00 0.00 2.34
385 386 1.153628 CGGGCCTGGTCTTCTAACG 60.154 63.158 2.57 0.00 0.00 3.18
386 387 1.449778 GGGCCTGGTCTTCTAACGC 60.450 63.158 0.84 0.00 0.00 4.84
387 388 1.449778 GGCCTGGTCTTCTAACGCC 60.450 63.158 0.00 0.00 0.00 5.68
388 389 1.449778 GCCTGGTCTTCTAACGCCC 60.450 63.158 0.00 0.00 0.00 6.13
389 390 1.153628 CCTGGTCTTCTAACGCCCG 60.154 63.158 0.00 0.00 0.00 6.13
390 391 1.601419 CCTGGTCTTCTAACGCCCGA 61.601 60.000 0.00 0.00 0.00 5.14
391 392 0.458025 CTGGTCTTCTAACGCCCGAC 60.458 60.000 0.00 0.00 0.00 4.79
392 393 1.180456 TGGTCTTCTAACGCCCGACA 61.180 55.000 0.00 0.00 0.00 4.35
393 394 0.175073 GGTCTTCTAACGCCCGACAT 59.825 55.000 0.00 0.00 0.00 3.06
394 395 1.557651 GTCTTCTAACGCCCGACATC 58.442 55.000 0.00 0.00 0.00 3.06
395 396 1.135199 GTCTTCTAACGCCCGACATCA 60.135 52.381 0.00 0.00 0.00 3.07
396 397 1.754803 TCTTCTAACGCCCGACATCAT 59.245 47.619 0.00 0.00 0.00 2.45
397 398 2.128035 CTTCTAACGCCCGACATCATC 58.872 52.381 0.00 0.00 0.00 2.92
398 399 0.387929 TCTAACGCCCGACATCATCC 59.612 55.000 0.00 0.00 0.00 3.51
399 400 0.939577 CTAACGCCCGACATCATCCG 60.940 60.000 0.00 0.00 0.00 4.18
400 401 2.964438 TAACGCCCGACATCATCCGC 62.964 60.000 0.00 0.00 0.00 5.54
403 404 4.969196 CCCGACATCATCCGCCGG 62.969 72.222 0.00 0.00 39.85 6.13
405 406 4.889856 CGACATCATCCGCCGGCA 62.890 66.667 28.98 8.41 0.00 5.69
406 407 2.513666 GACATCATCCGCCGGCAA 60.514 61.111 28.98 14.85 0.00 4.52
407 408 2.823829 GACATCATCCGCCGGCAAC 61.824 63.158 28.98 0.00 0.00 4.17
408 409 2.514592 CATCATCCGCCGGCAACT 60.515 61.111 28.98 6.52 0.00 3.16
409 410 1.227527 CATCATCCGCCGGCAACTA 60.228 57.895 28.98 8.49 0.00 2.24
410 411 0.813610 CATCATCCGCCGGCAACTAA 60.814 55.000 28.98 8.92 0.00 2.24
411 412 0.107410 ATCATCCGCCGGCAACTAAA 60.107 50.000 28.98 7.09 0.00 1.85
412 413 0.742990 TCATCCGCCGGCAACTAAAG 60.743 55.000 28.98 7.87 0.00 1.85
413 414 1.024579 CATCCGCCGGCAACTAAAGT 61.025 55.000 28.98 0.00 0.00 2.66
414 415 1.024579 ATCCGCCGGCAACTAAAGTG 61.025 55.000 28.98 6.19 0.00 3.16
415 416 2.175811 CGCCGGCAACTAAAGTGC 59.824 61.111 28.98 0.00 0.00 4.40
416 417 2.175811 GCCGGCAACTAAAGTGCG 59.824 61.111 24.80 0.00 0.00 5.34
417 418 2.867472 CCGGCAACTAAAGTGCGG 59.133 61.111 0.00 0.00 0.00 5.69
418 419 1.964373 CCGGCAACTAAAGTGCGGT 60.964 57.895 0.00 0.00 0.00 5.68
419 420 0.671163 CCGGCAACTAAAGTGCGGTA 60.671 55.000 0.00 0.00 0.00 4.02
420 421 1.149987 CGGCAACTAAAGTGCGGTAA 58.850 50.000 0.00 0.00 0.00 2.85
421 422 1.735571 CGGCAACTAAAGTGCGGTAAT 59.264 47.619 0.00 0.00 0.00 1.89
422 423 2.222953 CGGCAACTAAAGTGCGGTAATC 60.223 50.000 0.00 0.00 0.00 1.75
423 424 3.007635 GGCAACTAAAGTGCGGTAATCT 58.992 45.455 0.00 0.00 0.00 2.40
424 425 3.181510 GGCAACTAAAGTGCGGTAATCTG 60.182 47.826 0.00 0.00 0.00 2.90
425 426 3.682858 GCAACTAAAGTGCGGTAATCTGA 59.317 43.478 0.00 0.00 0.00 3.27
426 427 4.153475 GCAACTAAAGTGCGGTAATCTGAA 59.847 41.667 0.00 0.00 0.00 3.02
427 428 5.334569 GCAACTAAAGTGCGGTAATCTGAAA 60.335 40.000 0.00 0.00 0.00 2.69
428 429 6.664515 CAACTAAAGTGCGGTAATCTGAAAA 58.335 36.000 0.00 0.00 0.00 2.29
429 430 7.305474 CAACTAAAGTGCGGTAATCTGAAAAT 58.695 34.615 0.00 0.00 0.00 1.82
430 431 7.448748 ACTAAAGTGCGGTAATCTGAAAATT 57.551 32.000 0.00 0.00 0.00 1.82
431 432 7.305474 ACTAAAGTGCGGTAATCTGAAAATTG 58.695 34.615 0.00 0.00 0.00 2.32
432 433 5.957842 AAGTGCGGTAATCTGAAAATTGA 57.042 34.783 0.00 0.00 0.00 2.57
433 434 5.296813 AGTGCGGTAATCTGAAAATTGAC 57.703 39.130 0.00 0.00 0.00 3.18
434 435 4.759693 AGTGCGGTAATCTGAAAATTGACA 59.240 37.500 0.00 0.00 0.00 3.58
435 436 5.415701 AGTGCGGTAATCTGAAAATTGACAT 59.584 36.000 0.00 0.00 0.00 3.06
436 437 5.739161 GTGCGGTAATCTGAAAATTGACATC 59.261 40.000 0.00 0.00 0.00 3.06
437 438 5.414144 TGCGGTAATCTGAAAATTGACATCA 59.586 36.000 0.00 0.00 0.00 3.07
438 439 6.072230 TGCGGTAATCTGAAAATTGACATCAA 60.072 34.615 0.00 0.00 40.51 2.57
439 440 6.470235 GCGGTAATCTGAAAATTGACATCAAG 59.530 38.462 0.23 0.00 39.47 3.02
440 441 6.968904 CGGTAATCTGAAAATTGACATCAAGG 59.031 38.462 0.23 0.00 39.47 3.61
441 442 7.260603 GGTAATCTGAAAATTGACATCAAGGG 58.739 38.462 0.23 0.00 39.47 3.95
442 443 6.923199 AATCTGAAAATTGACATCAAGGGT 57.077 33.333 0.23 0.00 39.47 4.34
443 444 8.956426 GTAATCTGAAAATTGACATCAAGGGTA 58.044 33.333 0.23 0.00 39.47 3.69
444 445 6.817765 TCTGAAAATTGACATCAAGGGTAC 57.182 37.500 0.23 0.00 39.47 3.34
445 446 5.411361 TCTGAAAATTGACATCAAGGGTACG 59.589 40.000 0.23 0.00 39.47 3.67
446 447 4.457603 TGAAAATTGACATCAAGGGTACGG 59.542 41.667 0.23 0.00 39.47 4.02
447 448 3.713826 AATTGACATCAAGGGTACGGT 57.286 42.857 0.23 0.00 39.47 4.83
448 449 2.465860 TTGACATCAAGGGTACGGTG 57.534 50.000 0.00 0.00 0.00 4.94
449 450 1.344065 TGACATCAAGGGTACGGTGT 58.656 50.000 0.00 0.00 0.00 4.16
450 451 2.527497 TGACATCAAGGGTACGGTGTA 58.473 47.619 0.00 0.00 0.00 2.90
451 452 2.898612 TGACATCAAGGGTACGGTGTAA 59.101 45.455 0.00 0.00 0.00 2.41
452 453 3.324268 TGACATCAAGGGTACGGTGTAAA 59.676 43.478 0.00 0.00 0.00 2.01
453 454 3.667360 ACATCAAGGGTACGGTGTAAAC 58.333 45.455 0.00 0.00 0.00 2.01
454 455 3.325716 ACATCAAGGGTACGGTGTAAACT 59.674 43.478 0.00 0.00 0.00 2.66
455 456 4.202388 ACATCAAGGGTACGGTGTAAACTT 60.202 41.667 0.00 0.00 0.00 2.66
456 457 4.420522 TCAAGGGTACGGTGTAAACTTT 57.579 40.909 0.00 0.00 0.00 2.66
457 458 4.779696 TCAAGGGTACGGTGTAAACTTTT 58.220 39.130 0.00 0.00 0.00 2.27
458 459 4.575645 TCAAGGGTACGGTGTAAACTTTTG 59.424 41.667 0.00 0.00 0.00 2.44
459 460 4.420522 AGGGTACGGTGTAAACTTTTGA 57.579 40.909 0.00 0.00 0.00 2.69
460 461 4.976864 AGGGTACGGTGTAAACTTTTGAT 58.023 39.130 0.00 0.00 0.00 2.57
461 462 6.112927 AGGGTACGGTGTAAACTTTTGATA 57.887 37.500 0.00 0.00 0.00 2.15
462 463 6.714278 AGGGTACGGTGTAAACTTTTGATAT 58.286 36.000 0.00 0.00 0.00 1.63
463 464 7.850193 AGGGTACGGTGTAAACTTTTGATATA 58.150 34.615 0.00 0.00 0.00 0.86
464 465 8.488668 AGGGTACGGTGTAAACTTTTGATATAT 58.511 33.333 0.00 0.00 0.00 0.86
465 466 9.112725 GGGTACGGTGTAAACTTTTGATATATT 57.887 33.333 0.00 0.00 0.00 1.28
520 521 5.807909 TGGTACTACCAGTAATTTGGGAAC 58.192 41.667 3.57 0.00 44.79 3.62
529 530 5.867174 CCAGTAATTTGGGAACGGAAATTTC 59.133 40.000 9.83 9.83 34.41 2.17
535 536 0.445043 GGAACGGAAATTTCGGACGG 59.555 55.000 26.86 10.38 0.00 4.79
541 542 2.674747 CGGAAATTTCGGACGGTAGGAA 60.675 50.000 18.21 0.00 0.00 3.36
542 543 2.674852 GGAAATTTCGGACGGTAGGAAC 59.325 50.000 11.95 0.00 0.00 3.62
634 635 4.223923 ACATCCTGGAGAAGAAACTCGAAT 59.776 41.667 1.52 0.00 37.74 3.34
656 657 0.313043 TCTTTCGACACGTGTCCCTC 59.687 55.000 36.01 17.64 41.86 4.30
659 660 2.121564 TTCGACACGTGTCCCTCGAC 62.122 60.000 36.01 15.89 41.86 4.20
1230 1232 1.003233 GCAAGGGGAGCTTCTCGTT 60.003 57.895 0.00 0.00 0.00 3.85
1248 1250 2.354704 CGTTGAGGAAGGCAAGGTCATA 60.355 50.000 0.00 0.00 0.00 2.15
1301 1303 2.509336 CAAGGATCGGCTTCGCGT 60.509 61.111 5.77 0.00 0.00 6.01
1335 1337 3.367498 GCCTATCGGACATCATCAGGTAC 60.367 52.174 0.00 0.00 0.00 3.34
1367 1381 3.057245 GCTTTGTGAGTTGAATTCCTCCC 60.057 47.826 2.27 0.00 0.00 4.30
1393 1407 2.027192 TCCTATCTTATGGCGGGATTGC 60.027 50.000 0.00 0.00 0.00 3.56
1403 1417 1.377987 CGGGATTGCGGGGAAAAGA 60.378 57.895 0.00 0.00 0.00 2.52
1406 1420 0.173481 GGATTGCGGGGAAAAGAAGC 59.827 55.000 0.00 0.00 0.00 3.86
1407 1421 0.887933 GATTGCGGGGAAAAGAAGCA 59.112 50.000 0.00 0.00 35.90 3.91
1408 1422 1.478105 GATTGCGGGGAAAAGAAGCAT 59.522 47.619 0.00 0.00 37.68 3.79
1409 1423 2.208132 TTGCGGGGAAAAGAAGCATA 57.792 45.000 0.00 0.00 37.68 3.14
1410 1424 1.459450 TGCGGGGAAAAGAAGCATAC 58.541 50.000 0.00 0.00 32.43 2.39
1411 1425 1.004277 TGCGGGGAAAAGAAGCATACT 59.996 47.619 0.00 0.00 32.43 2.12
1412 1426 2.092323 GCGGGGAAAAGAAGCATACTT 58.908 47.619 0.00 0.00 39.43 2.24
1413 1427 2.492088 GCGGGGAAAAGAAGCATACTTT 59.508 45.455 0.00 0.00 38.91 2.66
1435 1449 5.140747 TGGCGTTTTGTTGGCTTATTATT 57.859 34.783 0.00 0.00 0.00 1.40
1436 1450 4.926238 TGGCGTTTTGTTGGCTTATTATTG 59.074 37.500 0.00 0.00 0.00 1.90
1437 1451 4.328712 GGCGTTTTGTTGGCTTATTATTGG 59.671 41.667 0.00 0.00 0.00 3.16
1438 1452 5.164954 GCGTTTTGTTGGCTTATTATTGGA 58.835 37.500 0.00 0.00 0.00 3.53
1439 1453 5.288472 GCGTTTTGTTGGCTTATTATTGGAG 59.712 40.000 0.00 0.00 0.00 3.86
1440 1454 5.804979 CGTTTTGTTGGCTTATTATTGGAGG 59.195 40.000 0.00 0.00 0.00 4.30
1523 1669 0.674581 CGGTTGATTCTGCTGCAGGA 60.675 55.000 27.79 21.67 31.51 3.86
1582 1728 1.928868 TGAGGATCTCAGTGCACTCA 58.071 50.000 18.64 2.09 35.39 3.41
1600 1746 5.069781 GCACTCATTACTTATCCTCCTCACT 59.930 44.000 0.00 0.00 0.00 3.41
1602 1748 6.322456 CACTCATTACTTATCCTCCTCACTGA 59.678 42.308 0.00 0.00 0.00 3.41
1643 1789 1.553690 GGGCTCTTACCTGCTGGACA 61.554 60.000 17.64 0.38 37.04 4.02
1701 1866 2.290514 CCATTGACAAGGCAGAGGAGAA 60.291 50.000 0.00 0.00 0.00 2.87
1702 1867 3.415212 CATTGACAAGGCAGAGGAGAAA 58.585 45.455 0.00 0.00 0.00 2.52
1708 1873 3.394606 ACAAGGCAGAGGAGAAAGGTAAA 59.605 43.478 0.00 0.00 0.00 2.01
1712 1877 4.538089 AGGCAGAGGAGAAAGGTAAAGAAT 59.462 41.667 0.00 0.00 0.00 2.40
1740 1905 3.379445 GGACAAGTCGAGGGCGGA 61.379 66.667 0.00 0.00 38.28 5.54
1756 1921 2.019984 GCGGAGGCTCAGAAATTCATT 58.980 47.619 19.08 0.00 35.83 2.57
1761 1926 4.024218 GGAGGCTCAGAAATTCATTGATCG 60.024 45.833 17.69 0.00 0.00 3.69
1766 1931 2.035066 CAGAAATTCATTGATCGGGCCC 59.965 50.000 13.57 13.57 0.00 5.80
1784 1949 3.010420 GCCCTCAACAGTTTCTCCATAC 58.990 50.000 0.00 0.00 0.00 2.39
1790 1955 0.810031 CAGTTTCTCCATACGGGCGG 60.810 60.000 0.00 0.00 36.21 6.13
1823 2042 4.635324 GCTGGAAGAAGAAGAAGGATGAAG 59.365 45.833 0.00 0.00 34.07 3.02
1824 2043 5.570439 GCTGGAAGAAGAAGAAGGATGAAGA 60.570 44.000 0.00 0.00 34.07 2.87
1825 2044 6.439636 TGGAAGAAGAAGAAGGATGAAGAA 57.560 37.500 0.00 0.00 0.00 2.52
1826 2045 6.234177 TGGAAGAAGAAGAAGGATGAAGAAC 58.766 40.000 0.00 0.00 0.00 3.01
1827 2046 5.645929 GGAAGAAGAAGAAGGATGAAGAACC 59.354 44.000 0.00 0.00 0.00 3.62
1828 2047 5.172687 AGAAGAAGAAGGATGAAGAACCC 57.827 43.478 0.00 0.00 0.00 4.11
1829 2048 4.599241 AGAAGAAGAAGGATGAAGAACCCA 59.401 41.667 0.00 0.00 0.00 4.51
1830 2049 4.566426 AGAAGAAGGATGAAGAACCCAG 57.434 45.455 0.00 0.00 0.00 4.45
1845 2064 1.077858 CCAGCAAGAAGGAGGAGGC 60.078 63.158 0.00 0.00 0.00 4.70
1846 2065 1.681666 CAGCAAGAAGGAGGAGGCA 59.318 57.895 0.00 0.00 0.00 4.75
1869 2091 0.393132 GCACCCAAGAAGTAGAGGCC 60.393 60.000 0.00 0.00 0.00 5.19
1950 2176 4.876125 TGCGCCAATCAGTTTTTATTTCA 58.124 34.783 4.18 0.00 0.00 2.69
1951 2177 5.477510 TGCGCCAATCAGTTTTTATTTCAT 58.522 33.333 4.18 0.00 0.00 2.57
1952 2178 5.576384 TGCGCCAATCAGTTTTTATTTCATC 59.424 36.000 4.18 0.00 0.00 2.92
1953 2179 5.807011 GCGCCAATCAGTTTTTATTTCATCT 59.193 36.000 0.00 0.00 0.00 2.90
1954 2180 6.311200 GCGCCAATCAGTTTTTATTTCATCTT 59.689 34.615 0.00 0.00 0.00 2.40
1955 2181 7.148590 GCGCCAATCAGTTTTTATTTCATCTTT 60.149 33.333 0.00 0.00 0.00 2.52
1956 2182 8.375465 CGCCAATCAGTTTTTATTTCATCTTTC 58.625 33.333 0.00 0.00 0.00 2.62
1957 2183 8.659491 GCCAATCAGTTTTTATTTCATCTTTCC 58.341 33.333 0.00 0.00 0.00 3.13
1958 2184 9.933723 CCAATCAGTTTTTATTTCATCTTTCCT 57.066 29.630 0.00 0.00 0.00 3.36
1961 2187 9.846248 ATCAGTTTTTATTTCATCTTTCCTTCG 57.154 29.630 0.00 0.00 0.00 3.79
1962 2188 8.296713 TCAGTTTTTATTTCATCTTTCCTTCGG 58.703 33.333 0.00 0.00 0.00 4.30
1963 2189 8.082242 CAGTTTTTATTTCATCTTTCCTTCGGT 58.918 33.333 0.00 0.00 0.00 4.69
1964 2190 8.082242 AGTTTTTATTTCATCTTTCCTTCGGTG 58.918 33.333 0.00 0.00 0.00 4.94
1965 2191 6.509418 TTTATTTCATCTTTCCTTCGGTGG 57.491 37.500 0.00 0.00 0.00 4.61
1966 2192 1.821216 TTCATCTTTCCTTCGGTGGC 58.179 50.000 0.00 0.00 0.00 5.01
1967 2193 0.035439 TCATCTTTCCTTCGGTGGCC 60.035 55.000 0.00 0.00 0.00 5.36
1984 2210 2.825532 TGGCCTCAATCTTTACTTTGGC 59.174 45.455 3.32 0.00 38.49 4.52
2015 2241 6.892658 AACTTATCAATGTGTTGCCTGTAA 57.107 33.333 0.00 0.00 35.26 2.41
2016 2242 7.466746 AACTTATCAATGTGTTGCCTGTAAT 57.533 32.000 0.00 0.00 35.26 1.89
2017 2243 6.855836 ACTTATCAATGTGTTGCCTGTAATG 58.144 36.000 0.00 0.00 35.26 1.90
2216 2463 1.209128 CGTCGCATGACCCATTAGTC 58.791 55.000 0.00 0.00 42.37 2.59
2264 2511 1.527380 TGTTCCCGGTTCTTGTGGC 60.527 57.895 0.00 0.00 0.00 5.01
2317 2564 4.803426 GTCGCTGGCCACGAGGAG 62.803 72.222 24.44 8.63 40.80 3.69
2355 2602 3.611057 CGTTTACAACTACTCTGGCTCGT 60.611 47.826 0.00 0.00 0.00 4.18
2399 2646 9.274206 ACATCTTACTTCTTCCTCTTTTACAAC 57.726 33.333 0.00 0.00 0.00 3.32
2400 2647 9.495572 CATCTTACTTCTTCCTCTTTTACAACT 57.504 33.333 0.00 0.00 0.00 3.16
2417 2664 9.616156 TTTTACAACTAATCCACAGACTTGTTA 57.384 29.630 0.00 0.00 34.62 2.41
2418 2665 9.787435 TTTACAACTAATCCACAGACTTGTTAT 57.213 29.630 0.00 0.00 34.62 1.89
2419 2666 7.907214 ACAACTAATCCACAGACTTGTTATC 57.093 36.000 0.00 0.00 34.62 1.75
2569 2826 3.189495 CACTGAGGACACGCGATATATCT 59.811 47.826 15.93 1.74 0.00 1.98
2662 2920 2.297701 TGAACCTGTCAGTTTCTTGCC 58.702 47.619 11.01 0.00 0.00 4.52
2663 2921 1.609072 GAACCTGTCAGTTTCTTGCCC 59.391 52.381 3.01 0.00 0.00 5.36
2664 2922 0.178990 ACCTGTCAGTTTCTTGCCCC 60.179 55.000 0.00 0.00 0.00 5.80
2707 2974 1.016130 AATCTCGCTTGAGCACCACG 61.016 55.000 3.65 0.00 42.21 4.94
2735 3002 2.039418 AGTTTTGAACTTTCCTGCCCC 58.961 47.619 0.00 0.00 39.04 5.80
2753 3021 2.033801 CCCCGACGGTTGTAGTGTATAG 59.966 54.545 13.94 0.00 0.00 1.31
2754 3022 2.033801 CCCGACGGTTGTAGTGTATAGG 59.966 54.545 13.94 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.663904 CCGGAAACACAGATAATTTATACAATG 57.336 33.333 0.00 0.00 0.00 2.82
32 33 8.846211 CCCGGAAACACAGATAATTTATACAAT 58.154 33.333 0.73 0.00 0.00 2.71
33 34 7.201750 GCCCGGAAACACAGATAATTTATACAA 60.202 37.037 0.73 0.00 0.00 2.41
34 35 6.261381 GCCCGGAAACACAGATAATTTATACA 59.739 38.462 0.73 0.00 0.00 2.29
35 36 6.261381 TGCCCGGAAACACAGATAATTTATAC 59.739 38.462 0.73 0.00 0.00 1.47
36 37 6.358178 TGCCCGGAAACACAGATAATTTATA 58.642 36.000 0.73 0.00 0.00 0.98
37 38 5.197451 TGCCCGGAAACACAGATAATTTAT 58.803 37.500 0.73 0.00 0.00 1.40
38 39 4.590918 TGCCCGGAAACACAGATAATTTA 58.409 39.130 0.73 0.00 0.00 1.40
39 40 3.426615 TGCCCGGAAACACAGATAATTT 58.573 40.909 0.73 0.00 0.00 1.82
40 41 3.016736 CTGCCCGGAAACACAGATAATT 58.983 45.455 0.73 0.00 31.67 1.40
41 42 2.643551 CTGCCCGGAAACACAGATAAT 58.356 47.619 0.73 0.00 31.67 1.28
42 43 1.339631 CCTGCCCGGAAACACAGATAA 60.340 52.381 0.73 0.00 33.16 1.75
43 44 0.251916 CCTGCCCGGAAACACAGATA 59.748 55.000 0.73 0.00 33.16 1.98
44 45 1.002134 CCTGCCCGGAAACACAGAT 60.002 57.895 0.73 0.00 33.16 2.90
45 46 2.144078 TCCTGCCCGGAAACACAGA 61.144 57.895 0.73 0.00 39.40 3.41
46 47 2.429930 TCCTGCCCGGAAACACAG 59.570 61.111 0.73 2.00 39.40 3.66
53 54 1.378514 GCTTCATTTCCTGCCCGGA 60.379 57.895 0.73 0.00 41.06 5.14
54 55 1.250154 TTGCTTCATTTCCTGCCCGG 61.250 55.000 0.00 0.00 0.00 5.73
55 56 0.819582 ATTGCTTCATTTCCTGCCCG 59.180 50.000 0.00 0.00 0.00 6.13
56 57 1.826720 TGATTGCTTCATTTCCTGCCC 59.173 47.619 0.00 0.00 0.00 5.36
57 58 2.494870 AGTGATTGCTTCATTTCCTGCC 59.505 45.455 0.00 0.00 36.54 4.85
58 59 3.863142 AGTGATTGCTTCATTTCCTGC 57.137 42.857 0.00 0.00 36.54 4.85
59 60 5.803967 GCTTTAGTGATTGCTTCATTTCCTG 59.196 40.000 0.00 0.00 36.54 3.86
60 61 5.477984 TGCTTTAGTGATTGCTTCATTTCCT 59.522 36.000 0.00 0.00 36.54 3.36
61 62 5.713025 TGCTTTAGTGATTGCTTCATTTCC 58.287 37.500 0.00 0.00 36.54 3.13
62 63 7.642071 TTTGCTTTAGTGATTGCTTCATTTC 57.358 32.000 0.00 0.00 36.54 2.17
63 64 8.436046 TTTTTGCTTTAGTGATTGCTTCATTT 57.564 26.923 0.00 0.00 36.54 2.32
85 86 6.760770 TGATTGCTTCGTTTCCTTTGATTTTT 59.239 30.769 0.00 0.00 0.00 1.94
86 87 6.279882 TGATTGCTTCGTTTCCTTTGATTTT 58.720 32.000 0.00 0.00 0.00 1.82
87 88 5.841810 TGATTGCTTCGTTTCCTTTGATTT 58.158 33.333 0.00 0.00 0.00 2.17
88 89 5.452078 TGATTGCTTCGTTTCCTTTGATT 57.548 34.783 0.00 0.00 0.00 2.57
89 90 5.452078 TTGATTGCTTCGTTTCCTTTGAT 57.548 34.783 0.00 0.00 0.00 2.57
90 91 4.909696 TTGATTGCTTCGTTTCCTTTGA 57.090 36.364 0.00 0.00 0.00 2.69
91 92 5.964887 TTTTGATTGCTTCGTTTCCTTTG 57.035 34.783 0.00 0.00 0.00 2.77
92 93 5.005299 CGTTTTTGATTGCTTCGTTTCCTTT 59.995 36.000 0.00 0.00 0.00 3.11
93 94 4.502645 CGTTTTTGATTGCTTCGTTTCCTT 59.497 37.500 0.00 0.00 0.00 3.36
94 95 4.041723 CGTTTTTGATTGCTTCGTTTCCT 58.958 39.130 0.00 0.00 0.00 3.36
95 96 4.039032 TCGTTTTTGATTGCTTCGTTTCC 58.961 39.130 0.00 0.00 0.00 3.13
96 97 4.967575 TCTCGTTTTTGATTGCTTCGTTTC 59.032 37.500 0.00 0.00 0.00 2.78
97 98 4.733405 GTCTCGTTTTTGATTGCTTCGTTT 59.267 37.500 0.00 0.00 0.00 3.60
98 99 4.201871 TGTCTCGTTTTTGATTGCTTCGTT 60.202 37.500 0.00 0.00 0.00 3.85
99 100 3.311322 TGTCTCGTTTTTGATTGCTTCGT 59.689 39.130 0.00 0.00 0.00 3.85
100 101 3.872354 TGTCTCGTTTTTGATTGCTTCG 58.128 40.909 0.00 0.00 0.00 3.79
101 102 4.144731 CGTTGTCTCGTTTTTGATTGCTTC 59.855 41.667 0.00 0.00 0.00 3.86
102 103 4.035017 CGTTGTCTCGTTTTTGATTGCTT 58.965 39.130 0.00 0.00 0.00 3.91
103 104 3.548014 CCGTTGTCTCGTTTTTGATTGCT 60.548 43.478 0.00 0.00 0.00 3.91
104 105 2.719046 CCGTTGTCTCGTTTTTGATTGC 59.281 45.455 0.00 0.00 0.00 3.56
105 106 2.719046 GCCGTTGTCTCGTTTTTGATTG 59.281 45.455 0.00 0.00 0.00 2.67
106 107 2.601266 CGCCGTTGTCTCGTTTTTGATT 60.601 45.455 0.00 0.00 0.00 2.57
107 108 1.070175 CGCCGTTGTCTCGTTTTTGAT 60.070 47.619 0.00 0.00 0.00 2.57
108 109 0.302288 CGCCGTTGTCTCGTTTTTGA 59.698 50.000 0.00 0.00 0.00 2.69
109 110 1.259544 GCGCCGTTGTCTCGTTTTTG 61.260 55.000 0.00 0.00 0.00 2.44
110 111 1.010462 GCGCCGTTGTCTCGTTTTT 60.010 52.632 0.00 0.00 0.00 1.94
111 112 2.174969 TGCGCCGTTGTCTCGTTTT 61.175 52.632 4.18 0.00 0.00 2.43
112 113 2.586635 TGCGCCGTTGTCTCGTTT 60.587 55.556 4.18 0.00 0.00 3.60
113 114 3.335534 GTGCGCCGTTGTCTCGTT 61.336 61.111 4.18 0.00 0.00 3.85
114 115 3.858868 ATGTGCGCCGTTGTCTCGT 62.859 57.895 4.18 0.00 0.00 4.18
115 116 3.071459 GATGTGCGCCGTTGTCTCG 62.071 63.158 4.18 0.00 0.00 4.04
116 117 1.738099 AGATGTGCGCCGTTGTCTC 60.738 57.895 4.18 0.00 0.00 3.36
117 118 2.029288 CAGATGTGCGCCGTTGTCT 61.029 57.895 4.18 0.00 0.00 3.41
118 119 2.227968 GACAGATGTGCGCCGTTGTC 62.228 60.000 4.18 8.34 0.00 3.18
119 120 2.280797 ACAGATGTGCGCCGTTGT 60.281 55.556 4.18 0.00 0.00 3.32
120 121 2.231745 CTGACAGATGTGCGCCGTTG 62.232 60.000 4.18 0.00 0.00 4.10
121 122 2.029288 CTGACAGATGTGCGCCGTT 61.029 57.895 4.18 0.00 0.00 4.44
122 123 2.433145 CTGACAGATGTGCGCCGT 60.433 61.111 4.18 0.00 0.00 5.68
123 124 1.959899 GAACTGACAGATGTGCGCCG 61.960 60.000 10.08 0.00 0.00 6.46
124 125 1.790387 GAACTGACAGATGTGCGCC 59.210 57.895 10.08 0.00 0.00 6.53
125 126 1.284982 ACGAACTGACAGATGTGCGC 61.285 55.000 10.08 0.00 38.68 6.09
126 127 0.710567 GACGAACTGACAGATGTGCG 59.289 55.000 10.08 0.32 40.73 5.34
127 128 1.989165 GAGACGAACTGACAGATGTGC 59.011 52.381 10.08 0.00 0.00 4.57
128 129 2.245942 CGAGACGAACTGACAGATGTG 58.754 52.381 10.08 0.00 0.00 3.21
129 130 1.200252 CCGAGACGAACTGACAGATGT 59.800 52.381 10.08 4.09 0.00 3.06
130 131 1.468224 CCCGAGACGAACTGACAGATG 60.468 57.143 10.08 0.64 0.00 2.90
131 132 0.811915 CCCGAGACGAACTGACAGAT 59.188 55.000 10.08 0.00 0.00 2.90
132 133 0.250597 TCCCGAGACGAACTGACAGA 60.251 55.000 10.08 0.00 0.00 3.41
133 134 0.596577 TTCCCGAGACGAACTGACAG 59.403 55.000 0.00 0.00 0.00 3.51
134 135 1.000607 CTTTCCCGAGACGAACTGACA 60.001 52.381 0.00 0.00 0.00 3.58
135 136 1.268899 TCTTTCCCGAGACGAACTGAC 59.731 52.381 0.00 0.00 0.00 3.51
136 137 1.612676 TCTTTCCCGAGACGAACTGA 58.387 50.000 0.00 0.00 0.00 3.41
137 138 2.531206 GATCTTTCCCGAGACGAACTG 58.469 52.381 0.00 0.00 0.00 3.16
138 139 1.132643 CGATCTTTCCCGAGACGAACT 59.867 52.381 0.00 0.00 0.00 3.01
139 140 1.135460 ACGATCTTTCCCGAGACGAAC 60.135 52.381 0.00 0.00 0.00 3.95
140 141 1.171308 ACGATCTTTCCCGAGACGAA 58.829 50.000 0.00 0.00 0.00 3.85
141 142 1.938577 CTACGATCTTTCCCGAGACGA 59.061 52.381 0.00 0.00 0.00 4.20
142 143 1.938577 TCTACGATCTTTCCCGAGACG 59.061 52.381 0.00 0.00 0.00 4.18
143 144 4.036498 TCAATCTACGATCTTTCCCGAGAC 59.964 45.833 0.00 0.00 0.00 3.36
144 145 4.204799 TCAATCTACGATCTTTCCCGAGA 58.795 43.478 0.00 0.00 0.00 4.04
145 146 4.569761 TCAATCTACGATCTTTCCCGAG 57.430 45.455 0.00 0.00 0.00 4.63
146 147 4.320275 CGATCAATCTACGATCTTTCCCGA 60.320 45.833 0.00 0.00 37.68 5.14
147 148 3.914966 CGATCAATCTACGATCTTTCCCG 59.085 47.826 0.00 0.00 37.68 5.14
148 149 5.122512 TCGATCAATCTACGATCTTTCCC 57.877 43.478 0.00 0.00 37.68 3.97
149 150 5.574830 CCATCGATCAATCTACGATCTTTCC 59.425 44.000 0.00 0.00 43.29 3.13
150 151 6.153067 ACCATCGATCAATCTACGATCTTTC 58.847 40.000 0.00 0.00 43.29 2.62
151 152 6.090483 ACCATCGATCAATCTACGATCTTT 57.910 37.500 0.00 0.00 43.29 2.52
152 153 5.713792 ACCATCGATCAATCTACGATCTT 57.286 39.130 0.00 0.00 43.29 2.40
153 154 5.241728 TGAACCATCGATCAATCTACGATCT 59.758 40.000 0.00 0.00 43.29 2.75
154 155 5.461526 TGAACCATCGATCAATCTACGATC 58.538 41.667 0.00 0.00 43.29 3.69
155 156 5.453567 TGAACCATCGATCAATCTACGAT 57.546 39.130 0.00 0.00 45.44 3.73
156 157 4.911514 TGAACCATCGATCAATCTACGA 57.088 40.909 0.00 0.00 40.18 3.43
157 158 6.309009 CCTATTGAACCATCGATCAATCTACG 59.691 42.308 13.73 4.15 43.33 3.51
158 159 7.155328 ACCTATTGAACCATCGATCAATCTAC 58.845 38.462 13.73 0.00 43.33 2.59
159 160 7.303182 ACCTATTGAACCATCGATCAATCTA 57.697 36.000 13.73 2.29 43.33 1.98
160 161 6.179906 ACCTATTGAACCATCGATCAATCT 57.820 37.500 13.73 0.00 43.33 2.40
161 162 6.260936 ACAACCTATTGAACCATCGATCAATC 59.739 38.462 13.73 4.91 43.33 2.67
162 163 6.038603 CACAACCTATTGAACCATCGATCAAT 59.961 38.462 14.52 14.52 45.54 2.57
163 164 5.353956 CACAACCTATTGAACCATCGATCAA 59.646 40.000 0.00 0.00 39.30 2.57
164 165 4.875536 CACAACCTATTGAACCATCGATCA 59.124 41.667 0.00 0.00 39.30 2.92
165 166 4.876107 ACACAACCTATTGAACCATCGATC 59.124 41.667 0.00 0.00 39.30 3.69
166 167 4.843728 ACACAACCTATTGAACCATCGAT 58.156 39.130 0.00 0.00 39.30 3.59
167 168 4.280436 ACACAACCTATTGAACCATCGA 57.720 40.909 0.00 0.00 39.30 3.59
168 169 5.175859 ACTACACAACCTATTGAACCATCG 58.824 41.667 0.00 0.00 39.30 3.84
169 170 7.553334 TCTACTACACAACCTATTGAACCATC 58.447 38.462 0.00 0.00 39.30 3.51
170 171 7.490657 TCTACTACACAACCTATTGAACCAT 57.509 36.000 0.00 0.00 39.30 3.55
171 172 6.921486 TCTACTACACAACCTATTGAACCA 57.079 37.500 0.00 0.00 39.30 3.67
172 173 6.696148 CGATCTACTACACAACCTATTGAACC 59.304 42.308 0.00 0.00 39.30 3.62
173 174 6.696148 CCGATCTACTACACAACCTATTGAAC 59.304 42.308 0.00 0.00 39.30 3.18
174 175 6.604396 TCCGATCTACTACACAACCTATTGAA 59.396 38.462 0.00 0.00 39.30 2.69
175 176 6.039047 GTCCGATCTACTACACAACCTATTGA 59.961 42.308 0.00 0.00 39.30 2.57
176 177 6.039493 AGTCCGATCTACTACACAACCTATTG 59.961 42.308 0.00 0.00 41.98 1.90
177 178 6.127793 AGTCCGATCTACTACACAACCTATT 58.872 40.000 0.00 0.00 0.00 1.73
178 179 5.692928 AGTCCGATCTACTACACAACCTAT 58.307 41.667 0.00 0.00 0.00 2.57
179 180 5.108187 AGTCCGATCTACTACACAACCTA 57.892 43.478 0.00 0.00 0.00 3.08
180 181 3.965694 AGTCCGATCTACTACACAACCT 58.034 45.455 0.00 0.00 0.00 3.50
181 182 4.275443 CCTAGTCCGATCTACTACACAACC 59.725 50.000 1.73 0.00 0.00 3.77
182 183 4.275443 CCCTAGTCCGATCTACTACACAAC 59.725 50.000 1.73 0.00 0.00 3.32
183 184 4.458397 CCCTAGTCCGATCTACTACACAA 58.542 47.826 1.73 0.00 0.00 3.33
184 185 3.746751 GCCCTAGTCCGATCTACTACACA 60.747 52.174 1.73 0.00 0.00 3.72
185 186 2.813172 GCCCTAGTCCGATCTACTACAC 59.187 54.545 1.73 0.00 0.00 2.90
186 187 2.709934 AGCCCTAGTCCGATCTACTACA 59.290 50.000 1.73 0.00 0.00 2.74
187 188 3.337358 GAGCCCTAGTCCGATCTACTAC 58.663 54.545 1.73 0.00 0.00 2.73
188 189 2.028294 CGAGCCCTAGTCCGATCTACTA 60.028 54.545 5.11 5.11 0.00 1.82
189 190 1.270947 CGAGCCCTAGTCCGATCTACT 60.271 57.143 3.44 3.44 0.00 2.57
190 191 1.158434 CGAGCCCTAGTCCGATCTAC 58.842 60.000 0.00 0.00 0.00 2.59
191 192 0.036448 CCGAGCCCTAGTCCGATCTA 59.964 60.000 0.00 0.00 0.00 1.98
192 193 1.228306 CCGAGCCCTAGTCCGATCT 60.228 63.158 0.00 0.00 0.00 2.75
193 194 1.108132 AACCGAGCCCTAGTCCGATC 61.108 60.000 0.00 0.00 0.00 3.69
194 195 1.076192 AACCGAGCCCTAGTCCGAT 60.076 57.895 0.00 0.00 0.00 4.18
195 196 1.751927 GAACCGAGCCCTAGTCCGA 60.752 63.158 0.00 0.00 0.00 4.55
196 197 2.005960 CTGAACCGAGCCCTAGTCCG 62.006 65.000 0.00 0.00 0.00 4.79
197 198 1.677637 CCTGAACCGAGCCCTAGTCC 61.678 65.000 0.00 0.00 0.00 3.85
198 199 0.683504 TCCTGAACCGAGCCCTAGTC 60.684 60.000 0.00 0.00 0.00 2.59
199 200 0.971447 GTCCTGAACCGAGCCCTAGT 60.971 60.000 0.00 0.00 0.00 2.57
200 201 0.970937 TGTCCTGAACCGAGCCCTAG 60.971 60.000 0.00 0.00 0.00 3.02
201 202 0.325296 ATGTCCTGAACCGAGCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
202 203 0.325296 TATGTCCTGAACCGAGCCCT 60.325 55.000 0.00 0.00 0.00 5.19
203 204 0.759346 ATATGTCCTGAACCGAGCCC 59.241 55.000 0.00 0.00 0.00 5.19
204 205 2.213499 CAATATGTCCTGAACCGAGCC 58.787 52.381 0.00 0.00 0.00 4.70
205 206 2.158957 TCCAATATGTCCTGAACCGAGC 60.159 50.000 0.00 0.00 0.00 5.03
206 207 3.722147 CTCCAATATGTCCTGAACCGAG 58.278 50.000 0.00 0.00 0.00 4.63
207 208 2.158957 GCTCCAATATGTCCTGAACCGA 60.159 50.000 0.00 0.00 0.00 4.69
208 209 2.213499 GCTCCAATATGTCCTGAACCG 58.787 52.381 0.00 0.00 0.00 4.44
209 210 3.209410 CTGCTCCAATATGTCCTGAACC 58.791 50.000 0.00 0.00 0.00 3.62
210 211 3.209410 CCTGCTCCAATATGTCCTGAAC 58.791 50.000 0.00 0.00 0.00 3.18
211 212 2.421952 GCCTGCTCCAATATGTCCTGAA 60.422 50.000 0.00 0.00 0.00 3.02
212 213 1.141657 GCCTGCTCCAATATGTCCTGA 59.858 52.381 0.00 0.00 0.00 3.86
213 214 1.602311 GCCTGCTCCAATATGTCCTG 58.398 55.000 0.00 0.00 0.00 3.86
214 215 0.475906 GGCCTGCTCCAATATGTCCT 59.524 55.000 0.00 0.00 0.00 3.85
215 216 0.475906 AGGCCTGCTCCAATATGTCC 59.524 55.000 3.11 0.00 0.00 4.02
216 217 2.370189 ACTAGGCCTGCTCCAATATGTC 59.630 50.000 17.99 0.00 0.00 3.06
217 218 2.412591 ACTAGGCCTGCTCCAATATGT 58.587 47.619 17.99 0.00 0.00 2.29
218 219 3.406764 GAACTAGGCCTGCTCCAATATG 58.593 50.000 17.99 0.00 0.00 1.78
219 220 2.037772 CGAACTAGGCCTGCTCCAATAT 59.962 50.000 17.99 0.00 0.00 1.28
220 221 1.412710 CGAACTAGGCCTGCTCCAATA 59.587 52.381 17.99 0.00 0.00 1.90
221 222 0.179000 CGAACTAGGCCTGCTCCAAT 59.821 55.000 17.99 0.00 0.00 3.16
222 223 0.902984 TCGAACTAGGCCTGCTCCAA 60.903 55.000 17.99 0.00 0.00 3.53
223 224 0.902984 TTCGAACTAGGCCTGCTCCA 60.903 55.000 17.99 0.00 0.00 3.86
224 225 0.179097 CTTCGAACTAGGCCTGCTCC 60.179 60.000 17.99 0.86 0.00 4.70
225 226 0.179097 CCTTCGAACTAGGCCTGCTC 60.179 60.000 17.99 8.03 0.00 4.26
226 227 0.614979 TCCTTCGAACTAGGCCTGCT 60.615 55.000 17.99 0.00 32.59 4.24
227 228 0.179097 CTCCTTCGAACTAGGCCTGC 60.179 60.000 17.99 0.64 32.59 4.85
228 229 0.461961 CCTCCTTCGAACTAGGCCTG 59.538 60.000 17.99 8.18 32.59 4.85
229 230 2.903404 CCTCCTTCGAACTAGGCCT 58.097 57.895 11.78 11.78 32.59 5.19
232 233 1.437986 CGGCCTCCTTCGAACTAGG 59.562 63.158 14.23 14.23 0.00 3.02
233 234 1.227002 GCGGCCTCCTTCGAACTAG 60.227 63.158 0.00 0.00 0.00 2.57
234 235 2.890371 GCGGCCTCCTTCGAACTA 59.110 61.111 0.00 0.00 0.00 2.24
235 236 4.436998 CGCGGCCTCCTTCGAACT 62.437 66.667 0.00 0.00 0.00 3.01
240 241 4.893601 GTAGCCGCGGCCTCCTTC 62.894 72.222 44.47 21.61 43.17 3.46
248 249 2.622011 TTTTTGCTGGTAGCCGCGG 61.622 57.895 24.05 24.05 41.51 6.46
249 250 2.950673 TTTTTGCTGGTAGCCGCG 59.049 55.556 0.00 0.00 41.51 6.46
264 265 9.456147 GTATATTATTTGTTTTGGGCCCTTTTT 57.544 29.630 25.70 2.10 0.00 1.94
265 266 8.606830 TGTATATTATTTGTTTTGGGCCCTTTT 58.393 29.630 25.70 1.56 0.00 2.27
266 267 8.152023 TGTATATTATTTGTTTTGGGCCCTTT 57.848 30.769 25.70 0.98 0.00 3.11
267 268 7.621683 TCTGTATATTATTTGTTTTGGGCCCTT 59.378 33.333 25.70 0.00 0.00 3.95
268 269 7.069455 GTCTGTATATTATTTGTTTTGGGCCCT 59.931 37.037 25.70 1.38 0.00 5.19
269 270 7.147811 TGTCTGTATATTATTTGTTTTGGGCCC 60.148 37.037 17.59 17.59 0.00 5.80
270 271 7.777095 TGTCTGTATATTATTTGTTTTGGGCC 58.223 34.615 0.00 0.00 0.00 5.80
271 272 9.816354 AATGTCTGTATATTATTTGTTTTGGGC 57.184 29.630 0.00 0.00 0.00 5.36
275 276 9.816354 GGCCAATGTCTGTATATTATTTGTTTT 57.184 29.630 0.00 0.00 0.00 2.43
276 277 8.421002 GGGCCAATGTCTGTATATTATTTGTTT 58.579 33.333 4.39 0.00 0.00 2.83
277 278 7.563188 TGGGCCAATGTCTGTATATTATTTGTT 59.437 33.333 2.13 0.00 0.00 2.83
278 279 7.066142 TGGGCCAATGTCTGTATATTATTTGT 58.934 34.615 2.13 0.00 0.00 2.83
279 280 7.523293 TGGGCCAATGTCTGTATATTATTTG 57.477 36.000 2.13 0.00 0.00 2.32
280 281 8.546083 TTTGGGCCAATGTCTGTATATTATTT 57.454 30.769 21.65 0.00 0.00 1.40
281 282 8.421002 GTTTTGGGCCAATGTCTGTATATTATT 58.579 33.333 21.65 0.00 0.00 1.40
282 283 7.255451 CGTTTTGGGCCAATGTCTGTATATTAT 60.255 37.037 21.65 0.00 0.00 1.28
283 284 6.038825 CGTTTTGGGCCAATGTCTGTATATTA 59.961 38.462 21.65 0.00 0.00 0.98
284 285 5.163561 CGTTTTGGGCCAATGTCTGTATATT 60.164 40.000 21.65 0.00 0.00 1.28
285 286 4.338118 CGTTTTGGGCCAATGTCTGTATAT 59.662 41.667 21.65 0.00 0.00 0.86
286 287 3.692101 CGTTTTGGGCCAATGTCTGTATA 59.308 43.478 21.65 0.00 0.00 1.47
287 288 2.491693 CGTTTTGGGCCAATGTCTGTAT 59.508 45.455 21.65 0.00 0.00 2.29
288 289 1.883275 CGTTTTGGGCCAATGTCTGTA 59.117 47.619 21.65 0.00 0.00 2.74
289 290 0.673437 CGTTTTGGGCCAATGTCTGT 59.327 50.000 21.65 0.00 0.00 3.41
290 291 0.038343 CCGTTTTGGGCCAATGTCTG 60.038 55.000 21.65 8.52 0.00 3.51
291 292 2.350738 CCGTTTTGGGCCAATGTCT 58.649 52.632 21.65 0.00 0.00 3.41
292 293 4.985845 CCGTTTTGGGCCAATGTC 57.014 55.556 21.65 12.19 0.00 3.06
309 310 1.233080 CCAAATTCTAGGGGCCCCC 59.767 63.158 38.68 19.98 45.90 5.40
310 311 1.233080 CCCAAATTCTAGGGGCCCC 59.767 63.158 35.90 35.90 41.58 5.80
315 316 1.233080 GGGCCCCCAAATTCTAGGG 59.767 63.158 12.23 4.07 45.04 3.53
316 317 0.106015 CAGGGCCCCCAAATTCTAGG 60.106 60.000 21.43 0.00 38.92 3.02
317 318 0.631212 ACAGGGCCCCCAAATTCTAG 59.369 55.000 21.43 0.00 38.92 2.43
318 319 0.334676 CACAGGGCCCCCAAATTCTA 59.665 55.000 21.43 0.00 38.92 2.10
319 320 1.079073 CACAGGGCCCCCAAATTCT 59.921 57.895 21.43 0.00 38.92 2.40
320 321 2.659063 GCACAGGGCCCCCAAATTC 61.659 63.158 21.43 0.00 38.92 2.17
321 322 2.607442 GCACAGGGCCCCCAAATT 60.607 61.111 21.43 0.00 38.92 1.82
349 350 4.738998 TCCAAGGGCATGTGCGGG 62.739 66.667 0.00 0.00 43.26 6.13
350 351 3.443045 GTCCAAGGGCATGTGCGG 61.443 66.667 0.00 0.00 43.26 5.69
351 352 3.803082 CGTCCAAGGGCATGTGCG 61.803 66.667 0.00 0.00 43.26 5.34
352 353 3.443045 CCGTCCAAGGGCATGTGC 61.443 66.667 0.00 0.00 41.14 4.57
353 354 2.751436 CCCGTCCAAGGGCATGTG 60.751 66.667 0.00 0.00 45.72 3.21
360 361 4.410400 GACCAGGCCCGTCCAAGG 62.410 72.222 9.05 0.00 38.02 3.61
361 362 2.804828 GAAGACCAGGCCCGTCCAAG 62.805 65.000 15.30 0.00 37.29 3.61
362 363 2.852075 AAGACCAGGCCCGTCCAA 60.852 61.111 15.30 0.00 37.29 3.53
363 364 2.449967 TAGAAGACCAGGCCCGTCCA 62.450 60.000 15.30 0.00 37.29 4.02
364 365 1.262640 TTAGAAGACCAGGCCCGTCC 61.263 60.000 15.30 3.47 0.00 4.79
365 366 0.108281 GTTAGAAGACCAGGCCCGTC 60.108 60.000 11.80 11.80 0.00 4.79
366 367 1.885163 CGTTAGAAGACCAGGCCCGT 61.885 60.000 0.00 0.00 0.00 5.28
367 368 1.153628 CGTTAGAAGACCAGGCCCG 60.154 63.158 0.00 0.00 0.00 6.13
368 369 1.449778 GCGTTAGAAGACCAGGCCC 60.450 63.158 0.00 0.00 0.00 5.80
369 370 1.449778 GGCGTTAGAAGACCAGGCC 60.450 63.158 0.00 0.00 0.00 5.19
370 371 1.449778 GGGCGTTAGAAGACCAGGC 60.450 63.158 0.00 0.00 0.00 4.85
371 372 1.153628 CGGGCGTTAGAAGACCAGG 60.154 63.158 0.00 0.00 0.00 4.45
372 373 0.458025 GTCGGGCGTTAGAAGACCAG 60.458 60.000 0.00 0.00 0.00 4.00
373 374 1.180456 TGTCGGGCGTTAGAAGACCA 61.180 55.000 0.00 0.00 0.00 4.02
374 375 0.175073 ATGTCGGGCGTTAGAAGACC 59.825 55.000 0.00 0.00 0.00 3.85
375 376 1.135199 TGATGTCGGGCGTTAGAAGAC 60.135 52.381 0.00 0.00 0.00 3.01
376 377 1.179152 TGATGTCGGGCGTTAGAAGA 58.821 50.000 0.00 0.00 0.00 2.87
377 378 2.128035 GATGATGTCGGGCGTTAGAAG 58.872 52.381 0.00 0.00 0.00 2.85
378 379 1.202486 GGATGATGTCGGGCGTTAGAA 60.202 52.381 0.00 0.00 0.00 2.10
379 380 0.387929 GGATGATGTCGGGCGTTAGA 59.612 55.000 0.00 0.00 0.00 2.10
380 381 0.939577 CGGATGATGTCGGGCGTTAG 60.940 60.000 0.00 0.00 0.00 2.34
381 382 1.066752 CGGATGATGTCGGGCGTTA 59.933 57.895 0.00 0.00 0.00 3.18
382 383 2.202878 CGGATGATGTCGGGCGTT 60.203 61.111 0.00 0.00 0.00 4.84
383 384 4.891727 GCGGATGATGTCGGGCGT 62.892 66.667 0.00 0.00 0.00 5.68
386 387 4.969196 CCGGCGGATGATGTCGGG 62.969 72.222 24.41 0.00 37.35 5.14
388 389 4.889856 TGCCGGCGGATGATGTCG 62.890 66.667 33.44 0.00 0.00 4.35
389 390 2.513666 TTGCCGGCGGATGATGTC 60.514 61.111 33.44 10.67 0.00 3.06
390 391 1.966901 TAGTTGCCGGCGGATGATGT 61.967 55.000 33.44 10.69 0.00 3.06
391 392 0.813610 TTAGTTGCCGGCGGATGATG 60.814 55.000 33.44 1.21 0.00 3.07
392 393 0.107410 TTTAGTTGCCGGCGGATGAT 60.107 50.000 33.44 14.78 0.00 2.45
393 394 0.742990 CTTTAGTTGCCGGCGGATGA 60.743 55.000 33.44 11.56 0.00 2.92
394 395 1.024579 ACTTTAGTTGCCGGCGGATG 61.025 55.000 33.44 12.20 0.00 3.51
395 396 1.024579 CACTTTAGTTGCCGGCGGAT 61.025 55.000 33.44 14.39 0.00 4.18
396 397 1.669760 CACTTTAGTTGCCGGCGGA 60.670 57.895 33.44 12.50 0.00 5.54
397 398 2.867472 CACTTTAGTTGCCGGCGG 59.133 61.111 24.35 24.35 0.00 6.13
398 399 2.175811 GCACTTTAGTTGCCGGCG 59.824 61.111 23.90 7.94 0.00 6.46
399 400 2.175811 CGCACTTTAGTTGCCGGC 59.824 61.111 22.73 22.73 0.00 6.13
400 401 0.671163 TACCGCACTTTAGTTGCCGG 60.671 55.000 0.00 0.00 37.51 6.13
401 402 1.149987 TTACCGCACTTTAGTTGCCG 58.850 50.000 0.00 0.00 0.00 5.69
402 403 3.007635 AGATTACCGCACTTTAGTTGCC 58.992 45.455 0.00 0.00 0.00 4.52
403 404 3.682858 TCAGATTACCGCACTTTAGTTGC 59.317 43.478 0.00 0.00 0.00 4.17
404 405 5.856126 TTCAGATTACCGCACTTTAGTTG 57.144 39.130 0.00 0.00 0.00 3.16
405 406 6.870971 TTTTCAGATTACCGCACTTTAGTT 57.129 33.333 0.00 0.00 0.00 2.24
406 407 7.174253 TCAATTTTCAGATTACCGCACTTTAGT 59.826 33.333 0.00 0.00 0.00 2.24
407 408 7.481798 GTCAATTTTCAGATTACCGCACTTTAG 59.518 37.037 0.00 0.00 0.00 1.85
408 409 7.041030 TGTCAATTTTCAGATTACCGCACTTTA 60.041 33.333 0.00 0.00 0.00 1.85
409 410 6.149633 GTCAATTTTCAGATTACCGCACTTT 58.850 36.000 0.00 0.00 0.00 2.66
410 411 5.240623 TGTCAATTTTCAGATTACCGCACTT 59.759 36.000 0.00 0.00 0.00 3.16
411 412 4.759693 TGTCAATTTTCAGATTACCGCACT 59.240 37.500 0.00 0.00 0.00 4.40
412 413 5.041951 TGTCAATTTTCAGATTACCGCAC 57.958 39.130 0.00 0.00 0.00 5.34
413 414 5.414144 TGATGTCAATTTTCAGATTACCGCA 59.586 36.000 0.00 0.00 0.00 5.69
414 415 5.879237 TGATGTCAATTTTCAGATTACCGC 58.121 37.500 0.00 0.00 0.00 5.68
415 416 6.968904 CCTTGATGTCAATTTTCAGATTACCG 59.031 38.462 0.00 0.00 35.02 4.02
416 417 7.093771 ACCCTTGATGTCAATTTTCAGATTACC 60.094 37.037 0.00 0.00 35.02 2.85
417 418 7.830739 ACCCTTGATGTCAATTTTCAGATTAC 58.169 34.615 0.00 0.00 35.02 1.89
418 419 8.956426 GTACCCTTGATGTCAATTTTCAGATTA 58.044 33.333 0.00 0.00 35.02 1.75
419 420 6.923199 ACCCTTGATGTCAATTTTCAGATT 57.077 33.333 0.00 0.00 35.02 2.40
420 421 6.094048 CGTACCCTTGATGTCAATTTTCAGAT 59.906 38.462 0.00 0.00 35.02 2.90
421 422 5.411361 CGTACCCTTGATGTCAATTTTCAGA 59.589 40.000 0.00 0.00 35.02 3.27
422 423 5.391950 CCGTACCCTTGATGTCAATTTTCAG 60.392 44.000 0.00 0.00 35.02 3.02
423 424 4.457603 CCGTACCCTTGATGTCAATTTTCA 59.542 41.667 0.00 0.00 35.02 2.69
424 425 4.457949 ACCGTACCCTTGATGTCAATTTTC 59.542 41.667 0.00 0.00 35.02 2.29
425 426 4.217550 CACCGTACCCTTGATGTCAATTTT 59.782 41.667 0.00 0.00 35.02 1.82
426 427 3.756434 CACCGTACCCTTGATGTCAATTT 59.244 43.478 0.00 0.00 35.02 1.82
427 428 3.244770 ACACCGTACCCTTGATGTCAATT 60.245 43.478 0.00 0.00 35.02 2.32
428 429 2.304761 ACACCGTACCCTTGATGTCAAT 59.695 45.455 0.00 0.00 35.02 2.57
429 430 1.695242 ACACCGTACCCTTGATGTCAA 59.305 47.619 0.00 0.00 0.00 3.18
430 431 1.344065 ACACCGTACCCTTGATGTCA 58.656 50.000 0.00 0.00 0.00 3.58
431 432 3.598019 TTACACCGTACCCTTGATGTC 57.402 47.619 0.00 0.00 0.00 3.06
432 433 3.325716 AGTTTACACCGTACCCTTGATGT 59.674 43.478 0.00 0.00 0.00 3.06
433 434 3.934068 AGTTTACACCGTACCCTTGATG 58.066 45.455 0.00 0.00 0.00 3.07
434 435 4.628963 AAGTTTACACCGTACCCTTGAT 57.371 40.909 0.00 0.00 0.00 2.57
435 436 4.420522 AAAGTTTACACCGTACCCTTGA 57.579 40.909 0.00 0.00 0.00 3.02
436 437 4.575645 TCAAAAGTTTACACCGTACCCTTG 59.424 41.667 0.00 0.00 0.00 3.61
437 438 4.779696 TCAAAAGTTTACACCGTACCCTT 58.220 39.130 0.00 0.00 0.00 3.95
438 439 4.420522 TCAAAAGTTTACACCGTACCCT 57.579 40.909 0.00 0.00 0.00 4.34
439 440 6.990341 ATATCAAAAGTTTACACCGTACCC 57.010 37.500 0.00 0.00 0.00 3.69
498 499 4.872124 CGTTCCCAAATTACTGGTAGTACC 59.128 45.833 12.80 12.80 39.22 3.34
499 500 4.872124 CCGTTCCCAAATTACTGGTAGTAC 59.128 45.833 0.00 0.00 34.33 2.73
500 501 4.776837 TCCGTTCCCAAATTACTGGTAGTA 59.223 41.667 0.00 0.00 34.33 1.82
501 502 3.583966 TCCGTTCCCAAATTACTGGTAGT 59.416 43.478 0.00 0.00 34.33 2.73
502 503 4.210724 TCCGTTCCCAAATTACTGGTAG 57.789 45.455 0.00 0.00 34.33 3.18
503 504 4.637387 TTCCGTTCCCAAATTACTGGTA 57.363 40.909 0.00 0.00 34.33 3.25
504 505 3.512219 TTCCGTTCCCAAATTACTGGT 57.488 42.857 0.00 0.00 34.33 4.00
505 506 5.400066 AATTTCCGTTCCCAAATTACTGG 57.600 39.130 0.00 0.00 31.74 4.00
506 507 5.571357 CGAAATTTCCGTTCCCAAATTACTG 59.429 40.000 12.54 0.00 32.22 2.74
507 508 5.336134 CCGAAATTTCCGTTCCCAAATTACT 60.336 40.000 12.54 0.00 32.22 2.24
508 509 4.860352 CCGAAATTTCCGTTCCCAAATTAC 59.140 41.667 12.54 0.00 32.22 1.89
509 510 4.765856 TCCGAAATTTCCGTTCCCAAATTA 59.234 37.500 12.54 0.00 32.22 1.40
510 511 3.574826 TCCGAAATTTCCGTTCCCAAATT 59.425 39.130 12.54 0.00 34.36 1.82
511 512 3.057104 GTCCGAAATTTCCGTTCCCAAAT 60.057 43.478 12.54 0.00 0.00 2.32
512 513 2.293955 GTCCGAAATTTCCGTTCCCAAA 59.706 45.455 12.54 0.00 0.00 3.28
513 514 1.881324 GTCCGAAATTTCCGTTCCCAA 59.119 47.619 12.54 0.00 0.00 4.12
514 515 1.525941 GTCCGAAATTTCCGTTCCCA 58.474 50.000 12.54 0.00 0.00 4.37
515 516 0.445043 CGTCCGAAATTTCCGTTCCC 59.555 55.000 12.54 0.00 0.00 3.97
516 517 0.445043 CCGTCCGAAATTTCCGTTCC 59.555 55.000 12.54 0.00 0.00 3.62
517 518 1.150827 ACCGTCCGAAATTTCCGTTC 58.849 50.000 12.54 4.17 0.00 3.95
518 519 2.340337 CTACCGTCCGAAATTTCCGTT 58.660 47.619 12.54 2.03 0.00 4.44
519 520 1.404583 CCTACCGTCCGAAATTTCCGT 60.405 52.381 12.54 4.18 0.00 4.69
520 521 1.135024 TCCTACCGTCCGAAATTTCCG 60.135 52.381 12.54 9.98 0.00 4.30
529 530 0.172803 CTTCCTGTTCCTACCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
535 536 3.933332 CCACGAATTCTTCCTGTTCCTAC 59.067 47.826 3.52 0.00 0.00 3.18
541 542 1.003233 GTCCCCACGAATTCTTCCTGT 59.997 52.381 3.52 0.00 0.00 4.00
542 543 1.279271 AGTCCCCACGAATTCTTCCTG 59.721 52.381 3.52 0.00 0.00 3.86
619 620 6.159419 GAAAGACCATTCGAGTTTCTTCTC 57.841 41.667 2.95 0.00 0.00 2.87
656 657 0.547075 TAGAGAGGAGTGGGAGGTCG 59.453 60.000 0.00 0.00 0.00 4.79
950 951 2.202570 CTACGCAAGACCGGACCG 60.203 66.667 9.46 6.99 43.62 4.79
952 953 1.513586 CGACTACGCAAGACCGGAC 60.514 63.158 9.46 0.10 43.62 4.79
953 954 1.236616 TTCGACTACGCAAGACCGGA 61.237 55.000 9.46 0.00 43.62 5.14
1230 1232 2.439507 GGATATGACCTTGCCTTCCTCA 59.560 50.000 0.00 0.00 0.00 3.86
1248 1250 1.553690 CCTTGGTGAGGTGACGGGAT 61.554 60.000 0.00 0.00 40.95 3.85
1335 1337 3.951979 ACTCACAAAGCAAAAGACGAG 57.048 42.857 0.00 0.00 0.00 4.18
1367 1381 2.289694 CCCGCCATAAGATAGGAACTGG 60.290 54.545 0.00 0.00 41.52 4.00
1393 1407 3.119495 CCAAAGTATGCTTCTTTTCCCCG 60.119 47.826 0.00 0.00 33.58 5.73
1403 1417 3.726291 ACAAAACGCCAAAGTATGCTT 57.274 38.095 0.00 0.00 36.30 3.91
1406 1420 2.474735 GCCAACAAAACGCCAAAGTATG 59.525 45.455 0.00 0.00 0.00 2.39
1407 1421 2.364002 AGCCAACAAAACGCCAAAGTAT 59.636 40.909 0.00 0.00 0.00 2.12
1408 1422 1.751924 AGCCAACAAAACGCCAAAGTA 59.248 42.857 0.00 0.00 0.00 2.24
1409 1423 0.534873 AGCCAACAAAACGCCAAAGT 59.465 45.000 0.00 0.00 0.00 2.66
1410 1424 1.650825 AAGCCAACAAAACGCCAAAG 58.349 45.000 0.00 0.00 0.00 2.77
1411 1425 2.961526 TAAGCCAACAAAACGCCAAA 57.038 40.000 0.00 0.00 0.00 3.28
1412 1426 3.460857 AATAAGCCAACAAAACGCCAA 57.539 38.095 0.00 0.00 0.00 4.52
1413 1427 4.792521 ATAATAAGCCAACAAAACGCCA 57.207 36.364 0.00 0.00 0.00 5.69
1452 1466 1.606313 CCAATCAGGCCCAAACGGT 60.606 57.895 0.00 0.00 0.00 4.83
1479 1493 3.726291 ATCCAAAGAACAACAAACGGG 57.274 42.857 0.00 0.00 0.00 5.28
1523 1669 1.469595 CCAATGATGGCGAAATTGCGT 60.470 47.619 7.84 0.00 40.58 5.24
1582 1728 5.012561 GCCATCAGTGAGGAGGATAAGTAAT 59.987 44.000 6.31 0.00 0.00 1.89
1600 1746 3.605726 AAATGGATGAGGATGCCATCA 57.394 42.857 7.06 0.00 41.36 3.07
1602 1748 2.969950 CCAAAATGGATGAGGATGCCAT 59.030 45.455 0.00 0.00 43.95 4.40
1643 1789 3.220110 CCTTCATGTGAGGCTTGCATAT 58.780 45.455 5.22 0.00 0.00 1.78
1693 1858 5.222130 TGCCAATTCTTTACCTTTCTCCTCT 60.222 40.000 0.00 0.00 0.00 3.69
1701 1866 3.506067 CGACCTTGCCAATTCTTTACCTT 59.494 43.478 0.00 0.00 0.00 3.50
1702 1867 3.081804 CGACCTTGCCAATTCTTTACCT 58.918 45.455 0.00 0.00 0.00 3.08
1708 1873 0.400213 TGTCCGACCTTGCCAATTCT 59.600 50.000 0.00 0.00 0.00 2.40
1712 1877 0.534203 GACTTGTCCGACCTTGCCAA 60.534 55.000 0.00 0.00 0.00 4.52
1740 1905 3.881688 CCGATCAATGAATTTCTGAGCCT 59.118 43.478 0.00 0.00 0.00 4.58
1756 1921 1.488705 AACTGTTGAGGGCCCGATCA 61.489 55.000 18.44 13.59 0.00 2.92
1761 1926 0.609406 GGAGAAACTGTTGAGGGCCC 60.609 60.000 16.46 16.46 0.00 5.80
1766 1931 3.262420 CCCGTATGGAGAAACTGTTGAG 58.738 50.000 1.27 0.00 37.49 3.02
1784 1949 4.639171 GCCAAACACAACCGCCCG 62.639 66.667 0.00 0.00 0.00 6.13
1790 1955 2.687935 TCTTCTTCCAGCCAAACACAAC 59.312 45.455 0.00 0.00 0.00 3.32
1823 2042 0.693049 TCCTCCTTCTTGCTGGGTTC 59.307 55.000 0.00 0.00 0.00 3.62
1824 2043 0.695347 CTCCTCCTTCTTGCTGGGTT 59.305 55.000 0.00 0.00 0.00 4.11
1825 2044 1.204113 CCTCCTCCTTCTTGCTGGGT 61.204 60.000 0.00 0.00 0.00 4.51
1826 2045 1.606531 CCTCCTCCTTCTTGCTGGG 59.393 63.158 0.00 0.00 0.00 4.45
1827 2046 1.077858 GCCTCCTCCTTCTTGCTGG 60.078 63.158 0.00 0.00 0.00 4.85
1828 2047 0.392729 CTGCCTCCTCCTTCTTGCTG 60.393 60.000 0.00 0.00 0.00 4.41
1829 2048 0.546267 TCTGCCTCCTCCTTCTTGCT 60.546 55.000 0.00 0.00 0.00 3.91
1830 2049 0.107752 CTCTGCCTCCTCCTTCTTGC 60.108 60.000 0.00 0.00 0.00 4.01
1845 2064 1.902508 TCTACTTCTTGGGTGCCTCTG 59.097 52.381 0.00 0.00 0.00 3.35
1846 2065 2.183679 CTCTACTTCTTGGGTGCCTCT 58.816 52.381 0.00 0.00 0.00 3.69
1869 2091 2.679716 CCTCCTCCTTGGGCTTGG 59.320 66.667 0.00 0.00 36.20 3.61
1925 2151 2.138596 AAAAACTGATTGGCGCAGTG 57.861 45.000 10.83 0.00 45.27 3.66
1957 2183 1.826385 AAAGATTGAGGCCACCGAAG 58.174 50.000 5.01 0.00 0.00 3.79
1958 2184 2.304761 AGTAAAGATTGAGGCCACCGAA 59.695 45.455 5.01 0.00 0.00 4.30
1959 2185 1.906574 AGTAAAGATTGAGGCCACCGA 59.093 47.619 5.01 0.00 0.00 4.69
1960 2186 2.403252 AGTAAAGATTGAGGCCACCG 57.597 50.000 5.01 0.00 0.00 4.94
1961 2187 3.193479 CCAAAGTAAAGATTGAGGCCACC 59.807 47.826 5.01 0.00 0.00 4.61
1962 2188 3.367395 GCCAAAGTAAAGATTGAGGCCAC 60.367 47.826 5.01 0.00 34.94 5.01
1963 2189 2.825532 GCCAAAGTAAAGATTGAGGCCA 59.174 45.455 5.01 0.00 34.94 5.36
1964 2190 2.159379 CGCCAAAGTAAAGATTGAGGCC 60.159 50.000 0.00 0.00 37.62 5.19
1965 2191 2.732282 GCGCCAAAGTAAAGATTGAGGC 60.732 50.000 0.00 0.00 37.54 4.70
1966 2192 2.749621 AGCGCCAAAGTAAAGATTGAGG 59.250 45.455 2.29 0.00 0.00 3.86
1967 2193 3.686726 AGAGCGCCAAAGTAAAGATTGAG 59.313 43.478 2.29 0.00 0.00 3.02
1984 2210 5.536554 ACACATTGATAAGTTTGAGAGCG 57.463 39.130 0.00 0.00 0.00 5.03
2015 2241 6.152323 CCAAAACAGAGATCTTGAACCATCAT 59.848 38.462 0.00 0.00 34.96 2.45
2016 2242 5.474532 CCAAAACAGAGATCTTGAACCATCA 59.525 40.000 0.00 0.00 0.00 3.07
2017 2243 5.105997 CCCAAAACAGAGATCTTGAACCATC 60.106 44.000 0.00 0.00 0.00 3.51
2133 2380 3.814842 TGACAGGTTAGAAACACAGCATG 59.185 43.478 0.00 0.00 46.00 4.06
2134 2381 4.085357 TGACAGGTTAGAAACACAGCAT 57.915 40.909 0.00 0.00 0.00 3.79
2135 2382 3.552132 TGACAGGTTAGAAACACAGCA 57.448 42.857 0.00 0.00 0.00 4.41
2136 2383 5.438761 AATTGACAGGTTAGAAACACAGC 57.561 39.130 0.00 0.00 0.00 4.40
2137 2384 5.687285 GCAAATTGACAGGTTAGAAACACAG 59.313 40.000 0.00 0.00 0.00 3.66
2216 2463 5.065218 GGCACCTGAACATTACATAGACTTG 59.935 44.000 0.00 0.00 0.00 3.16
2395 2642 7.680730 AGATAACAAGTCTGTGGATTAGTTGT 58.319 34.615 0.00 0.00 35.37 3.32
2396 2643 8.553459 AAGATAACAAGTCTGTGGATTAGTTG 57.447 34.615 0.00 0.00 35.37 3.16
2403 2650 9.256228 AGAGTAATAAGATAACAAGTCTGTGGA 57.744 33.333 0.00 0.00 35.37 4.02
2404 2651 9.307121 CAGAGTAATAAGATAACAAGTCTGTGG 57.693 37.037 0.00 0.00 35.37 4.17
2417 2664 6.701340 TCAAGTGCACACAGAGTAATAAGAT 58.299 36.000 21.04 0.00 0.00 2.40
2418 2665 6.096673 TCAAGTGCACACAGAGTAATAAGA 57.903 37.500 21.04 0.00 0.00 2.10
2419 2666 6.815641 AGATCAAGTGCACACAGAGTAATAAG 59.184 38.462 21.04 0.00 0.00 1.73
2479 2735 1.142870 AGCAAGCTGTCACTAAACCCA 59.857 47.619 0.00 0.00 0.00 4.51
2569 2826 1.865788 GCATCAAACTCGGCAGCCAA 61.866 55.000 13.30 0.00 0.00 4.52
2662 2920 3.515104 ACAATTCAAGCAGGGTTATTGGG 59.485 43.478 9.97 0.00 0.00 4.12
2663 2921 4.806640 ACAATTCAAGCAGGGTTATTGG 57.193 40.909 9.97 0.00 0.00 3.16
2664 2922 6.222389 TCAAACAATTCAAGCAGGGTTATTG 58.778 36.000 5.58 5.58 0.00 1.90
2735 3002 2.357009 AGCCTATACACTACAACCGTCG 59.643 50.000 0.00 0.00 0.00 5.12
2754 3022 8.730602 CAGCTAGGCTTTGAAAGATTTTTCAGC 61.731 40.741 9.48 11.56 44.32 4.26
2772 3040 2.816672 AGCAAGAAAGTTTCAGCTAGGC 59.183 45.455 25.12 15.30 40.13 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.