Multiple sequence alignment - TraesCS3B01G067400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G067400 chr3B 100.000 4976 0 0 1923 6898 39909688 39904713 0.000000e+00 9190.0
1 TraesCS3B01G067400 chr3B 100.000 1349 0 0 324 1672 39911287 39909939 0.000000e+00 2492.0
2 TraesCS3B01G067400 chr3B 100.000 149 0 0 1 149 39911610 39911462 6.820000e-70 276.0
3 TraesCS3B01G067400 chr3B 100.000 35 0 0 4701 4735 39906856 39906822 1.610000e-06 65.8
4 TraesCS3B01G067400 chr3B 100.000 35 0 0 4755 4789 39906910 39906876 1.610000e-06 65.8
5 TraesCS3B01G067400 chr3D 94.356 4943 179 34 1975 6898 22364904 22369765 0.000000e+00 7491.0
6 TraesCS3B01G067400 chr3D 90.217 1104 55 25 598 1672 22363753 22364832 0.000000e+00 1391.0
7 TraesCS3B01G067400 chr3D 78.148 270 39 11 324 579 22363115 22363378 3.330000e-33 154.0
8 TraesCS3B01G067400 chr3D 84.277 159 15 8 3414 3570 22366806 22366956 5.580000e-31 147.0
9 TraesCS3B01G067400 chr3D 100.000 35 0 0 4755 4789 22367565 22367599 1.610000e-06 65.8
10 TraesCS3B01G067400 chr3D 100.000 35 0 0 4701 4735 22367619 22367653 1.610000e-06 65.8
11 TraesCS3B01G067400 chr3D 100.000 34 0 0 1923 1956 22364869 22364902 5.780000e-06 63.9
12 TraesCS3B01G067400 chr3A 93.278 5028 233 40 1923 6898 32115935 32120909 0.000000e+00 7315.0
13 TraesCS3B01G067400 chr3A 89.275 1035 67 23 669 1672 32114877 32115898 0.000000e+00 1256.0
14 TraesCS3B01G067400 chr3A 82.500 160 18 7 3414 3570 32117921 32118073 1.560000e-26 132.0
15 TraesCS3B01G067400 chr3A 87.234 94 9 1 2199 2292 32116070 32116160 3.400000e-18 104.0
16 TraesCS3B01G067400 chr3A 100.000 35 0 0 4755 4789 32118680 32118714 1.610000e-06 65.8
17 TraesCS3B01G067400 chr3A 100.000 35 0 0 4701 4735 32118761 32118795 1.610000e-06 65.8
18 TraesCS3B01G067400 chrUn 100.000 402 0 0 3005 3406 478490150 478489749 0.000000e+00 743.0
19 TraesCS3B01G067400 chr2B 100.000 61 0 0 1 61 739044774 739044834 5.650000e-21 113.0
20 TraesCS3B01G067400 chr2B 98.333 60 1 0 1 60 92499421 92499480 9.460000e-19 106.0
21 TraesCS3B01G067400 chr2B 98.333 60 1 0 1 60 198448791 198448732 9.460000e-19 106.0
22 TraesCS3B01G067400 chr1B 98.387 62 1 0 1 62 85434876 85434815 7.310000e-20 110.0
23 TraesCS3B01G067400 chr1B 98.361 61 1 0 1 61 660398625 660398565 2.630000e-19 108.0
24 TraesCS3B01G067400 chr5B 98.361 61 1 0 1 61 43348866 43348806 2.630000e-19 108.0
25 TraesCS3B01G067400 chr5B 98.361 61 1 0 1 61 487639329 487639389 2.630000e-19 108.0
26 TraesCS3B01G067400 chr4B 98.361 61 1 0 1 61 453049458 453049518 2.630000e-19 108.0
27 TraesCS3B01G067400 chr4B 98.361 61 1 0 1 61 537256422 537256362 2.630000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G067400 chr3B 39904713 39911610 6897 True 2417.920000 9190 100.000000 1 6898 5 chr3B.!!$R1 6897
1 TraesCS3B01G067400 chr3D 22363115 22369765 6650 False 1339.785714 7491 92.428286 324 6898 7 chr3D.!!$F1 6574
2 TraesCS3B01G067400 chr3A 32114877 32120909 6032 False 4285.500000 7315 91.276500 669 6898 2 chr3A.!!$F1 6229

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.105555 GGCCCATCCCATGAAATCCA 60.106 55.000 0.00 0.00 0.00 3.41 F
560 569 0.244178 GGGACAAGTGGACTCGAGAC 59.756 60.000 21.68 13.64 0.00 3.36 F
1305 1714 0.106066 CCTATTGGGGATTGCTGCCA 60.106 55.000 0.00 0.00 33.72 4.92 F
1650 2061 1.002502 GGTTGGTGCTGGTACCCTC 60.003 63.158 10.07 1.12 40.09 4.30 F
2097 2508 1.152902 AGTGGTGCTTTCAGCTGCA 60.153 52.632 9.47 0.00 42.97 4.41 F
2236 2647 1.931709 GCAAAATGCGCTTTCAGCTGA 60.932 47.619 13.74 13.74 39.60 4.26 F
3633 4052 1.979855 TCTGCAAGCAAACAGGCTAA 58.020 45.000 0.00 0.00 45.07 3.09 F
4264 4695 0.821517 TGCCTATGTCGGTACAGTGG 59.178 55.000 0.00 0.00 39.49 4.00 F
4987 5445 0.250901 CCCAGCACAGTAACTTGCCT 60.251 55.000 0.00 0.00 39.75 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1257 1664 1.069935 GGTCTGGATAGGGAAGCGC 59.930 63.158 0.00 0.0 0.00 5.92 R
2097 2508 0.251474 TGGTAGTGTGGACCGTAGCT 60.251 55.000 0.00 0.0 40.09 3.32 R
2468 2886 1.966493 ATTGCACGTCCTAAAGCGCG 61.966 55.000 0.00 0.0 0.00 6.86 R
3513 3932 5.304614 ACTTTATATCCACCGTGATAGCAGT 59.695 40.000 0.00 0.0 31.09 4.40 R
4049 4476 3.332034 ACTCGTACACCATAAAAGTGGC 58.668 45.455 0.00 0.0 43.27 5.01 R
4059 4486 3.949754 CAGGGAAGTATACTCGTACACCA 59.050 47.826 5.70 0.0 0.00 4.17 R
4987 5445 0.041238 AGGAGGATCGAACTGGTCCA 59.959 55.000 4.88 0.0 34.37 4.02 R
5647 6105 1.153647 CGCCGTATGTCCTGCAGAA 60.154 57.895 17.39 0.0 0.00 3.02 R
6362 6830 0.107703 CCAGTTCATTGCTCCGGCTA 60.108 55.000 0.00 0.0 39.59 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.566833 AGTTGTCTAGTTGGCATGCA 57.433 45.000 21.36 2.54 0.00 3.96
21 22 3.077484 AGTTGTCTAGTTGGCATGCAT 57.923 42.857 21.36 4.57 0.00 3.96
22 23 2.751259 AGTTGTCTAGTTGGCATGCATG 59.249 45.455 22.70 22.70 0.00 4.06
23 24 2.749076 GTTGTCTAGTTGGCATGCATGA 59.251 45.455 30.64 7.50 0.00 3.07
24 25 3.286329 TGTCTAGTTGGCATGCATGAT 57.714 42.857 30.64 11.73 0.00 2.45
25 26 4.420522 TGTCTAGTTGGCATGCATGATA 57.579 40.909 30.64 14.66 0.00 2.15
26 27 4.129380 TGTCTAGTTGGCATGCATGATAC 58.871 43.478 30.64 21.28 0.00 2.24
27 28 4.141642 TGTCTAGTTGGCATGCATGATACT 60.142 41.667 30.64 26.11 0.00 2.12
28 29 5.070313 TGTCTAGTTGGCATGCATGATACTA 59.930 40.000 30.64 25.87 0.00 1.82
29 30 5.636965 GTCTAGTTGGCATGCATGATACTAG 59.363 44.000 31.90 31.90 36.72 2.57
30 31 3.144506 AGTTGGCATGCATGATACTAGC 58.855 45.455 30.64 12.56 0.00 3.42
31 32 3.144506 GTTGGCATGCATGATACTAGCT 58.855 45.455 30.64 0.00 0.00 3.32
32 33 4.040829 AGTTGGCATGCATGATACTAGCTA 59.959 41.667 30.64 7.90 0.00 3.32
33 34 4.831674 TGGCATGCATGATACTAGCTAT 57.168 40.909 30.64 0.00 0.00 2.97
34 35 4.510571 TGGCATGCATGATACTAGCTATG 58.489 43.478 30.64 0.23 0.00 2.23
35 36 4.223477 TGGCATGCATGATACTAGCTATGA 59.777 41.667 30.64 0.00 0.00 2.15
36 37 5.104652 TGGCATGCATGATACTAGCTATGAT 60.105 40.000 30.64 0.00 0.00 2.45
37 38 6.098695 TGGCATGCATGATACTAGCTATGATA 59.901 38.462 30.64 0.00 0.00 2.15
38 39 6.423302 GGCATGCATGATACTAGCTATGATAC 59.577 42.308 30.64 5.71 0.00 2.24
39 40 7.208777 GCATGCATGATACTAGCTATGATACT 58.791 38.462 30.64 0.00 0.00 2.12
40 41 7.381948 GCATGCATGATACTAGCTATGATACTC 59.618 40.741 30.64 1.38 0.00 2.59
41 42 7.340122 TGCATGATACTAGCTATGATACTCC 57.660 40.000 0.00 0.00 0.00 3.85
42 43 6.322456 TGCATGATACTAGCTATGATACTCCC 59.678 42.308 0.00 0.00 0.00 4.30
43 44 6.322456 GCATGATACTAGCTATGATACTCCCA 59.678 42.308 0.00 0.00 0.00 4.37
44 45 7.015098 GCATGATACTAGCTATGATACTCCCAT 59.985 40.741 0.00 0.00 0.00 4.00
45 46 8.922237 CATGATACTAGCTATGATACTCCCATT 58.078 37.037 0.00 0.00 0.00 3.16
47 48 9.409918 TGATACTAGCTATGATACTCCCATTAC 57.590 37.037 0.00 0.00 0.00 1.89
48 49 9.409918 GATACTAGCTATGATACTCCCATTACA 57.590 37.037 0.00 0.00 0.00 2.41
49 50 9.769677 ATACTAGCTATGATACTCCCATTACAA 57.230 33.333 0.00 0.00 0.00 2.41
50 51 7.897864 ACTAGCTATGATACTCCCATTACAAC 58.102 38.462 0.00 0.00 0.00 3.32
51 52 6.115448 AGCTATGATACTCCCATTACAACC 57.885 41.667 0.00 0.00 0.00 3.77
52 53 5.606749 AGCTATGATACTCCCATTACAACCA 59.393 40.000 0.00 0.00 0.00 3.67
53 54 5.934625 GCTATGATACTCCCATTACAACCAG 59.065 44.000 0.00 0.00 0.00 4.00
54 55 4.150897 TGATACTCCCATTACAACCAGC 57.849 45.455 0.00 0.00 0.00 4.85
55 56 3.118038 TGATACTCCCATTACAACCAGCC 60.118 47.826 0.00 0.00 0.00 4.85
56 57 1.372501 ACTCCCATTACAACCAGCCT 58.627 50.000 0.00 0.00 0.00 4.58
57 58 2.557869 ACTCCCATTACAACCAGCCTA 58.442 47.619 0.00 0.00 0.00 3.93
58 59 2.916934 ACTCCCATTACAACCAGCCTAA 59.083 45.455 0.00 0.00 0.00 2.69
59 60 3.527665 ACTCCCATTACAACCAGCCTAAT 59.472 43.478 0.00 0.00 0.00 1.73
60 61 4.724798 ACTCCCATTACAACCAGCCTAATA 59.275 41.667 0.00 0.00 0.00 0.98
61 62 5.043737 TCCCATTACAACCAGCCTAATAC 57.956 43.478 0.00 0.00 0.00 1.89
62 63 4.724798 TCCCATTACAACCAGCCTAATACT 59.275 41.667 0.00 0.00 0.00 2.12
63 64 4.821805 CCCATTACAACCAGCCTAATACTG 59.178 45.833 0.00 0.00 34.82 2.74
72 73 3.209410 CAGCCTAATACTGGAAAGCAGG 58.791 50.000 0.00 0.00 0.00 4.85
73 74 2.173569 AGCCTAATACTGGAAAGCAGGG 59.826 50.000 0.00 0.00 0.00 4.45
74 75 2.172717 GCCTAATACTGGAAAGCAGGGA 59.827 50.000 0.00 0.00 0.00 4.20
75 76 3.745797 GCCTAATACTGGAAAGCAGGGAG 60.746 52.174 0.00 0.00 0.00 4.30
76 77 3.181450 CCTAATACTGGAAAGCAGGGAGG 60.181 52.174 0.00 0.00 0.00 4.30
77 78 1.216990 ATACTGGAAAGCAGGGAGGG 58.783 55.000 0.00 0.00 0.00 4.30
78 79 1.562672 TACTGGAAAGCAGGGAGGGC 61.563 60.000 0.00 0.00 0.00 5.19
79 80 3.651980 CTGGAAAGCAGGGAGGGCC 62.652 68.421 0.00 0.00 0.00 5.80
94 95 2.750665 GGCCCATCCCATGAAATCC 58.249 57.895 0.00 0.00 0.00 3.01
95 96 0.105555 GGCCCATCCCATGAAATCCA 60.106 55.000 0.00 0.00 0.00 3.41
96 97 1.692121 GGCCCATCCCATGAAATCCAA 60.692 52.381 0.00 0.00 0.00 3.53
97 98 2.332117 GCCCATCCCATGAAATCCAAT 58.668 47.619 0.00 0.00 0.00 3.16
98 99 2.038033 GCCCATCCCATGAAATCCAATG 59.962 50.000 0.00 0.00 0.00 2.82
99 100 3.578978 CCCATCCCATGAAATCCAATGA 58.421 45.455 0.00 0.00 0.00 2.57
100 101 3.576982 CCCATCCCATGAAATCCAATGAG 59.423 47.826 0.00 0.00 0.00 2.90
101 102 3.576982 CCATCCCATGAAATCCAATGAGG 59.423 47.826 0.00 0.00 39.47 3.86
102 103 3.317455 TCCCATGAAATCCAATGAGGG 57.683 47.619 0.00 0.00 38.24 4.30
103 104 2.858133 TCCCATGAAATCCAATGAGGGA 59.142 45.455 0.00 0.00 41.55 4.20
105 106 3.576982 CCCATGAAATCCAATGAGGGATG 59.423 47.826 0.00 0.00 46.96 3.51
106 107 4.476297 CCATGAAATCCAATGAGGGATGA 58.524 43.478 0.00 0.00 46.96 2.92
107 108 4.523173 CCATGAAATCCAATGAGGGATGAG 59.477 45.833 0.00 0.00 46.96 2.90
108 109 5.382616 CATGAAATCCAATGAGGGATGAGA 58.617 41.667 0.00 0.00 46.96 3.27
109 110 5.045012 TGAAATCCAATGAGGGATGAGAG 57.955 43.478 0.00 0.00 46.96 3.20
110 111 4.723285 TGAAATCCAATGAGGGATGAGAGA 59.277 41.667 0.00 0.00 46.96 3.10
111 112 5.192321 TGAAATCCAATGAGGGATGAGAGAA 59.808 40.000 0.00 0.00 46.96 2.87
112 113 5.722172 AATCCAATGAGGGATGAGAGAAA 57.278 39.130 0.00 0.00 46.96 2.52
113 114 5.926580 ATCCAATGAGGGATGAGAGAAAT 57.073 39.130 0.00 0.00 45.90 2.17
114 115 7.398289 AATCCAATGAGGGATGAGAGAAATA 57.602 36.000 0.00 0.00 46.96 1.40
115 116 6.430962 TCCAATGAGGGATGAGAGAAATAG 57.569 41.667 0.00 0.00 38.24 1.73
116 117 5.309020 TCCAATGAGGGATGAGAGAAATAGG 59.691 44.000 0.00 0.00 38.24 2.57
117 118 4.906747 ATGAGGGATGAGAGAAATAGGC 57.093 45.455 0.00 0.00 0.00 3.93
118 119 2.630098 TGAGGGATGAGAGAAATAGGCG 59.370 50.000 0.00 0.00 0.00 5.52
119 120 1.974236 AGGGATGAGAGAAATAGGCGG 59.026 52.381 0.00 0.00 0.00 6.13
120 121 1.971357 GGGATGAGAGAAATAGGCGGA 59.029 52.381 0.00 0.00 0.00 5.54
121 122 2.028567 GGGATGAGAGAAATAGGCGGAG 60.029 54.545 0.00 0.00 0.00 4.63
122 123 2.894126 GGATGAGAGAAATAGGCGGAGA 59.106 50.000 0.00 0.00 0.00 3.71
123 124 3.305744 GGATGAGAGAAATAGGCGGAGAC 60.306 52.174 0.00 0.00 0.00 3.36
136 137 4.514781 GGCGGAGACTTAACCAAAAATT 57.485 40.909 0.00 0.00 0.00 1.82
137 138 5.632244 GGCGGAGACTTAACCAAAAATTA 57.368 39.130 0.00 0.00 0.00 1.40
138 139 5.637809 GGCGGAGACTTAACCAAAAATTAG 58.362 41.667 0.00 0.00 0.00 1.73
139 140 5.413523 GGCGGAGACTTAACCAAAAATTAGA 59.586 40.000 0.00 0.00 0.00 2.10
140 141 6.072342 GGCGGAGACTTAACCAAAAATTAGAA 60.072 38.462 0.00 0.00 0.00 2.10
141 142 6.800408 GCGGAGACTTAACCAAAAATTAGAAC 59.200 38.462 0.00 0.00 0.00 3.01
142 143 7.308408 GCGGAGACTTAACCAAAAATTAGAACT 60.308 37.037 0.00 0.00 0.00 3.01
143 144 8.015658 CGGAGACTTAACCAAAAATTAGAACTG 58.984 37.037 0.00 0.00 0.00 3.16
144 145 9.063615 GGAGACTTAACCAAAAATTAGAACTGA 57.936 33.333 0.00 0.00 0.00 3.41
148 149 9.797556 ACTTAACCAAAAATTAGAACTGAACAC 57.202 29.630 0.00 0.00 0.00 3.32
354 355 3.460672 TAGGTAGGCCTGCATGCGC 62.461 63.158 23.21 11.23 46.47 6.09
378 379 1.805120 GCCTTAGCGCCGAACATCTTA 60.805 52.381 2.29 0.00 0.00 2.10
384 385 1.538204 GCGCCGAACATCTTAGATGGA 60.538 52.381 23.94 0.00 0.00 3.41
390 391 4.302455 CGAACATCTTAGATGGATCGCTT 58.698 43.478 26.80 13.71 0.00 4.68
418 427 2.677003 CGCCGGCTTCATTTCGTGT 61.677 57.895 26.68 0.00 0.00 4.49
428 437 4.382754 GCTTCATTTCGTGTGAAAATGTCC 59.617 41.667 8.06 0.00 46.53 4.02
433 442 7.881142 TCATTTCGTGTGAAAATGTCCTATTT 58.119 30.769 8.06 0.00 46.53 1.40
437 446 5.088739 CGTGTGAAAATGTCCTATTTCTGC 58.911 41.667 0.00 0.00 36.68 4.26
467 476 4.080015 TCTCCACTTCTCCTTTTTGAACCA 60.080 41.667 0.00 0.00 0.00 3.67
468 477 4.605183 TCCACTTCTCCTTTTTGAACCAA 58.395 39.130 0.00 0.00 0.00 3.67
469 478 5.020132 TCCACTTCTCCTTTTTGAACCAAA 58.980 37.500 0.00 0.00 0.00 3.28
470 479 5.127031 TCCACTTCTCCTTTTTGAACCAAAG 59.873 40.000 0.00 0.00 34.72 2.77
471 480 5.127031 CCACTTCTCCTTTTTGAACCAAAGA 59.873 40.000 0.00 0.00 34.72 2.52
472 481 6.036470 CACTTCTCCTTTTTGAACCAAAGAC 58.964 40.000 0.00 0.00 34.72 3.01
474 483 6.437477 ACTTCTCCTTTTTGAACCAAAGACTT 59.563 34.615 0.00 0.00 34.72 3.01
475 484 6.850752 TCTCCTTTTTGAACCAAAGACTTT 57.149 33.333 0.00 0.00 34.72 2.66
476 485 7.239763 TCTCCTTTTTGAACCAAAGACTTTT 57.760 32.000 0.00 0.00 34.72 2.27
477 486 7.676004 TCTCCTTTTTGAACCAAAGACTTTTT 58.324 30.769 0.00 0.00 34.72 1.94
478 487 7.602265 TCTCCTTTTTGAACCAAAGACTTTTTG 59.398 33.333 0.00 0.00 34.72 2.44
487 496 4.893424 CAAAGACTTTTTGGACGGAAGA 57.107 40.909 0.00 0.00 0.00 2.87
488 497 5.438761 CAAAGACTTTTTGGACGGAAGAT 57.561 39.130 0.00 0.00 0.00 2.40
489 498 5.215160 CAAAGACTTTTTGGACGGAAGATG 58.785 41.667 0.00 0.00 0.00 2.90
491 500 4.065789 AGACTTTTTGGACGGAAGATGAC 58.934 43.478 0.00 0.00 0.00 3.06
492 501 3.813166 GACTTTTTGGACGGAAGATGACA 59.187 43.478 0.00 0.00 0.00 3.58
493 502 4.398319 ACTTTTTGGACGGAAGATGACAT 58.602 39.130 0.00 0.00 0.00 3.06
494 503 5.556915 ACTTTTTGGACGGAAGATGACATA 58.443 37.500 0.00 0.00 0.00 2.29
495 504 6.001460 ACTTTTTGGACGGAAGATGACATAA 58.999 36.000 0.00 0.00 0.00 1.90
496 505 6.488683 ACTTTTTGGACGGAAGATGACATAAA 59.511 34.615 0.00 0.00 0.00 1.40
498 507 4.819105 TGGACGGAAGATGACATAAACT 57.181 40.909 0.00 0.00 0.00 2.66
499 508 5.160607 TGGACGGAAGATGACATAAACTT 57.839 39.130 0.00 0.00 0.00 2.66
500 509 5.175859 TGGACGGAAGATGACATAAACTTC 58.824 41.667 6.76 6.76 38.26 3.01
509 518 9.788960 GAAGATGACATAAACTTCCATTTTACC 57.211 33.333 4.69 0.00 34.54 2.85
510 519 8.877864 AGATGACATAAACTTCCATTTTACCA 57.122 30.769 0.00 0.00 0.00 3.25
511 520 9.308000 AGATGACATAAACTTCCATTTTACCAA 57.692 29.630 0.00 0.00 0.00 3.67
513 522 9.927668 ATGACATAAACTTCCATTTTACCAAAG 57.072 29.630 0.00 0.00 0.00 2.77
522 531 6.024552 TCCATTTTACCAAAGAAGATGTGC 57.975 37.500 0.00 0.00 0.00 4.57
531 540 4.142730 CCAAAGAAGATGTGCAGTAGAAGC 60.143 45.833 0.00 0.00 0.00 3.86
540 549 3.499537 TGTGCAGTAGAAGCTTGATTGTG 59.500 43.478 2.10 0.00 0.00 3.33
554 563 1.073923 GATTGTGGGGACAAGTGGACT 59.926 52.381 0.00 0.00 46.06 3.85
560 569 0.244178 GGGACAAGTGGACTCGAGAC 59.756 60.000 21.68 13.64 0.00 3.36
573 582 2.617308 ACTCGAGACGACTTCACTTCAA 59.383 45.455 21.68 0.00 0.00 2.69
579 588 2.744202 GACGACTTCACTTCAATGCCAT 59.256 45.455 0.00 0.00 0.00 4.40
581 590 3.058016 ACGACTTCACTTCAATGCCATTG 60.058 43.478 11.24 11.24 41.57 2.82
582 591 3.248266 GACTTCACTTCAATGCCATTGC 58.752 45.455 12.62 0.00 40.05 3.56
593 602 2.512485 TGCCATTGCAACAGTGAAAG 57.488 45.000 0.00 0.00 46.66 2.62
595 604 2.168106 TGCCATTGCAACAGTGAAAGTT 59.832 40.909 0.00 0.00 46.66 2.66
596 605 3.197265 GCCATTGCAACAGTGAAAGTTT 58.803 40.909 0.00 0.00 37.47 2.66
599 964 5.051816 CCATTGCAACAGTGAAAGTTTGAT 58.948 37.500 0.00 0.00 0.00 2.57
626 991 2.863809 CACATAGCATTTACCTCCCCC 58.136 52.381 0.00 0.00 0.00 5.40
627 992 2.174639 CACATAGCATTTACCTCCCCCA 59.825 50.000 0.00 0.00 0.00 4.96
639 1005 0.835941 CTCCCCCAGACCAGATTGAG 59.164 60.000 0.00 0.00 0.00 3.02
641 1007 1.565390 CCCCCAGACCAGATTGAGCA 61.565 60.000 0.00 0.00 0.00 4.26
652 1018 3.079578 CAGATTGAGCACAACAGTCCAT 58.920 45.455 0.00 0.00 38.90 3.41
661 1028 0.962356 CAACAGTCCATGCCCCTCAC 60.962 60.000 0.00 0.00 0.00 3.51
674 1041 5.199982 TGCCCCTCACCTATTTTATTTCA 57.800 39.130 0.00 0.00 0.00 2.69
843 1213 0.954449 CTTCACTCCCACTGCTGCTG 60.954 60.000 4.89 4.89 0.00 4.41
856 1236 2.364842 TGCTGCTCCTCCTCTCCC 60.365 66.667 0.00 0.00 0.00 4.30
862 1242 4.144727 TCCTCCTCTCCCCTCGCC 62.145 72.222 0.00 0.00 0.00 5.54
907 1299 3.507009 CCGACCGAGACCGAGGAC 61.507 72.222 0.00 0.00 38.22 3.85
944 1341 4.671569 CGCTAGATCTGGCCGGGC 62.672 72.222 23.65 23.42 33.13 6.13
945 1342 4.671569 GCTAGATCTGGCCGGGCG 62.672 72.222 24.45 17.80 0.00 6.13
946 1343 3.996124 CTAGATCTGGCCGGGCGG 61.996 72.222 30.31 30.31 38.57 6.13
1150 1556 4.827087 CCGCCGACATGCTGCTCT 62.827 66.667 0.00 0.00 0.00 4.09
1271 1678 4.585526 CGCGCGCTTCCCTATCCA 62.586 66.667 30.48 0.00 0.00 3.41
1305 1714 0.106066 CCTATTGGGGATTGCTGCCA 60.106 55.000 0.00 0.00 33.72 4.92
1359 1768 6.627287 GCTTATCCATTTTGGTCTGGGTTTAC 60.627 42.308 0.00 0.00 39.03 2.01
1369 1778 2.358984 GGGTTTACGGGCGCAGAA 60.359 61.111 10.83 0.00 0.00 3.02
1559 1969 2.102925 GGCAACATAATCATTGGTGGGG 59.897 50.000 0.00 0.00 32.30 4.96
1594 2004 4.588899 CCAATCTGGACTTCACCATTGTA 58.411 43.478 0.00 0.00 40.96 2.41
1599 2009 7.781324 ATCTGGACTTCACCATTGTAAATTT 57.219 32.000 0.00 0.00 39.34 1.82
1602 2012 8.573035 TCTGGACTTCACCATTGTAAATTTAAC 58.427 33.333 0.00 0.00 39.34 2.01
1650 2061 1.002502 GGTTGGTGCTGGTACCCTC 60.003 63.158 10.07 1.12 40.09 4.30
2059 2470 9.830975 TTGATGTACTATACTGTGTATTGCAAT 57.169 29.630 17.56 17.56 0.00 3.56
2076 2487 4.082274 GCAATATTTTGGGTTGCAAAGC 57.918 40.909 0.00 0.00 45.57 3.51
2097 2508 1.152902 AGTGGTGCTTTCAGCTGCA 60.153 52.632 9.47 0.00 42.97 4.41
2135 2546 2.482864 CAAACCTGAATGCCAAACCAC 58.517 47.619 0.00 0.00 0.00 4.16
2171 2582 3.489059 CGCCCCATGCTGTTAGTTTTATG 60.489 47.826 0.00 0.00 38.05 1.90
2173 2584 4.677779 GCCCCATGCTGTTAGTTTTATGTG 60.678 45.833 0.00 0.00 36.87 3.21
2174 2585 4.423732 CCCATGCTGTTAGTTTTATGTGC 58.576 43.478 0.00 0.00 0.00 4.57
2175 2586 4.082300 CCCATGCTGTTAGTTTTATGTGCA 60.082 41.667 0.00 0.00 0.00 4.57
2189 2600 2.375173 TGTGCAGTGCAGTGATCTAG 57.625 50.000 25.76 0.00 40.08 2.43
2236 2647 1.931709 GCAAAATGCGCTTTCAGCTGA 60.932 47.619 13.74 13.74 39.60 4.26
2255 2666 2.815647 GCTGCTACGCTCCACACC 60.816 66.667 0.00 0.00 0.00 4.16
2302 2713 3.425659 AGTTTGGCTTTCTCCTGGATTC 58.574 45.455 0.00 0.00 0.00 2.52
2424 2842 2.165641 TCTTTCTTCGATCGCTTGCCTA 59.834 45.455 11.09 0.00 0.00 3.93
2443 2861 7.987750 TGCCTAGTTAATGTGTTGTAATCAA 57.012 32.000 0.00 0.00 0.00 2.57
2445 2863 6.967199 GCCTAGTTAATGTGTTGTAATCAAGC 59.033 38.462 0.00 0.00 33.97 4.01
2446 2864 7.472543 CCTAGTTAATGTGTTGTAATCAAGCC 58.527 38.462 0.00 0.00 33.97 4.35
2468 2886 5.728067 GCCGCACTCTTTTCTTTTAGCTATC 60.728 44.000 0.00 0.00 0.00 2.08
2649 3068 6.395426 TGTCATGAGCTTTCTGTGATTTTT 57.605 33.333 0.00 0.00 0.00 1.94
2650 3069 7.509141 TGTCATGAGCTTTCTGTGATTTTTA 57.491 32.000 0.00 0.00 0.00 1.52
2652 3071 8.579006 TGTCATGAGCTTTCTGTGATTTTTATT 58.421 29.630 0.00 0.00 0.00 1.40
2749 3168 5.777850 GCTACCTAGCTTAGCTCTAGTTT 57.222 43.478 11.09 0.00 45.62 2.66
3003 3422 4.044336 TGATTGGTTGCTTGACTTTGTG 57.956 40.909 0.00 0.00 0.00 3.33
3445 3864 2.161855 GTGAGCCATTGGAACATGACA 58.838 47.619 6.95 0.00 39.30 3.58
3500 3919 4.265073 GTGAATACTTCTCAGCAACCCAT 58.735 43.478 0.00 0.00 0.00 4.00
3513 3932 7.395772 TCTCAGCAACCCATATAATTCACAAAA 59.604 33.333 0.00 0.00 0.00 2.44
3559 3978 6.632909 AGTGATATGATCTAGCTGAATCTGC 58.367 40.000 3.82 3.82 0.00 4.26
3563 3982 4.056092 TGATCTAGCTGAATCTGCACAG 57.944 45.455 14.35 10.34 37.22 3.66
3632 4051 2.086869 GATCTGCAAGCAAACAGGCTA 58.913 47.619 0.00 0.00 45.07 3.93
3633 4052 1.979855 TCTGCAAGCAAACAGGCTAA 58.020 45.000 0.00 0.00 45.07 3.09
3691 4110 7.063074 CGTCTCATAACTTCGTAGTGGATTTTT 59.937 37.037 0.00 0.00 34.01 1.94
3801 4221 9.382275 GTTTTACCTGTCTATATTTTTACGGGA 57.618 33.333 6.20 0.00 40.24 5.14
3864 4291 6.719829 AGAATCTAGTTTTTGGGGGTAAACTG 59.280 38.462 9.73 2.26 42.71 3.16
3924 4351 5.467035 TTTTAAAATCAAGGGTGAGCCAG 57.533 39.130 2.50 0.00 37.14 4.85
3977 4404 6.814644 CACGATTACCTATTGTGGTGAACTTA 59.185 38.462 0.00 0.00 42.63 2.24
4049 4476 7.028926 AGTATGGTCTAACTGAATCTGTACG 57.971 40.000 0.00 0.00 0.00 3.67
4059 4486 5.488341 ACTGAATCTGTACGCCACTTTTAT 58.512 37.500 0.00 0.00 0.00 1.40
4067 4494 2.798834 CGCCACTTTTATGGTGTACG 57.201 50.000 0.00 0.00 43.97 3.67
4079 4507 6.639632 TTATGGTGTACGAGTATACTTCCC 57.360 41.667 6.88 2.30 0.00 3.97
4089 4517 4.641094 CGAGTATACTTCCCTGTGTCTTCT 59.359 45.833 6.88 0.00 0.00 2.85
4137 4565 9.632807 CAGACAAGCTCTCCATATACTTATTAC 57.367 37.037 0.00 0.00 0.00 1.89
4169 4597 8.666573 GTCTCATAGCTTCATCATGGATTTATG 58.333 37.037 0.00 0.00 0.00 1.90
4202 4633 7.765695 AGTACCTTTGATTCATTTGTGATGT 57.234 32.000 0.00 0.00 0.00 3.06
4203 4634 8.181904 AGTACCTTTGATTCATTTGTGATGTT 57.818 30.769 0.00 0.00 0.00 2.71
4204 4635 9.295825 AGTACCTTTGATTCATTTGTGATGTTA 57.704 29.630 0.00 0.00 0.00 2.41
4216 4647 9.399797 TCATTTGTGATGTTATTATCTCAAGCT 57.600 29.630 0.00 0.00 39.93 3.74
4219 4650 7.792374 TGTGATGTTATTATCTCAAGCTTCC 57.208 36.000 0.00 0.00 30.26 3.46
4220 4651 6.479990 TGTGATGTTATTATCTCAAGCTTCCG 59.520 38.462 0.00 0.00 30.26 4.30
4221 4652 6.701841 GTGATGTTATTATCTCAAGCTTCCGA 59.298 38.462 0.00 0.00 0.00 4.55
4222 4653 7.224753 GTGATGTTATTATCTCAAGCTTCCGAA 59.775 37.037 0.00 0.00 0.00 4.30
4223 4654 7.933577 TGATGTTATTATCTCAAGCTTCCGAAT 59.066 33.333 0.00 0.00 0.00 3.34
4264 4695 0.821517 TGCCTATGTCGGTACAGTGG 59.178 55.000 0.00 0.00 39.49 4.00
4265 4696 0.822164 GCCTATGTCGGTACAGTGGT 59.178 55.000 0.00 0.00 39.49 4.16
4266 4697 1.206371 GCCTATGTCGGTACAGTGGTT 59.794 52.381 0.00 0.00 39.49 3.67
4267 4698 2.354403 GCCTATGTCGGTACAGTGGTTT 60.354 50.000 0.00 0.00 39.49 3.27
4268 4699 3.518590 CCTATGTCGGTACAGTGGTTTC 58.481 50.000 0.00 0.00 39.49 2.78
4269 4700 2.467566 ATGTCGGTACAGTGGTTTCC 57.532 50.000 0.00 0.00 39.49 3.13
4270 4701 1.416243 TGTCGGTACAGTGGTTTCCT 58.584 50.000 0.00 0.00 0.00 3.36
4271 4702 1.764134 TGTCGGTACAGTGGTTTCCTT 59.236 47.619 0.00 0.00 0.00 3.36
4272 4703 2.171027 TGTCGGTACAGTGGTTTCCTTT 59.829 45.455 0.00 0.00 0.00 3.11
4284 4715 7.558444 ACAGTGGTTTCCTTTGTTAAGATGTTA 59.442 33.333 0.00 0.00 32.92 2.41
4314 4745 1.799933 AGTTTTGGGGTTCCATTGCA 58.200 45.000 0.00 0.00 43.63 4.08
4319 4750 2.323999 TGGGGTTCCATTGCATTCTT 57.676 45.000 0.00 0.00 38.32 2.52
4384 4815 4.180817 GCATGGTATTTTAGTTGGCCAAC 58.819 43.478 36.62 36.62 41.45 3.77
4492 4923 2.435805 GACATCATCTGGAGGGCTTACA 59.564 50.000 0.00 0.00 30.88 2.41
4510 4941 5.399892 GCTTACATCTAATTCTTCGAGACCG 59.600 44.000 0.00 0.00 37.07 4.79
4525 4956 1.153046 ACCGTCAACACCAACTGGG 60.153 57.895 0.00 0.00 44.81 4.45
4652 5083 2.654863 CCACTTCCAGGTCAACACTTT 58.345 47.619 0.00 0.00 0.00 2.66
4834 5292 2.502947 ACCTGCTAGCAGATCATCAACA 59.497 45.455 40.03 4.52 46.30 3.33
4885 5343 3.107642 AGGTCAACTACACCTTTGTCG 57.892 47.619 0.00 0.00 41.95 4.35
4962 5420 2.003548 GGTCTTCTGCCCCTCCCAT 61.004 63.158 0.00 0.00 0.00 4.00
4987 5445 0.250901 CCCAGCACAGTAACTTGCCT 60.251 55.000 0.00 0.00 39.75 4.75
5305 5763 1.205893 CCTTCAAGAGGGAGGACTTCG 59.794 57.143 0.00 0.00 42.26 3.79
5314 5772 1.092345 GGAGGACTTCGAATGGCAGC 61.092 60.000 0.00 0.00 0.00 5.25
5477 5935 5.028549 TCAAAGATCCAGCCTCAATAGTC 57.971 43.478 0.00 0.00 0.00 2.59
5479 5937 4.953940 AAGATCCAGCCTCAATAGTCTC 57.046 45.455 0.00 0.00 0.00 3.36
5482 5940 2.672098 TCCAGCCTCAATAGTCTCTCC 58.328 52.381 0.00 0.00 0.00 3.71
5530 5988 1.626321 TCTGGCTTTGGTCGGTCATTA 59.374 47.619 0.00 0.00 0.00 1.90
5609 6067 4.744631 CAGTTTAGCGAATGCCAAAAACTT 59.255 37.500 9.08 0.00 42.00 2.66
5614 6072 2.288152 GCGAATGCCAAAAACTTCTCCA 60.288 45.455 0.00 0.00 33.98 3.86
5618 6076 5.107375 CGAATGCCAAAAACTTCTCCATTTG 60.107 40.000 0.00 0.00 33.62 2.32
5780 6238 1.033202 GTGTCTCGGACTCCCCTCTC 61.033 65.000 5.77 0.00 33.15 3.20
5786 6244 3.519930 GACTCCCCTCTCGCGACC 61.520 72.222 3.71 0.00 0.00 4.79
5842 6300 3.023119 ACAACCTGATGTGCTTTGACAA 58.977 40.909 0.00 0.00 30.82 3.18
5929 6387 6.844696 TTTGCTAGTACAAAGTTCTGACTG 57.155 37.500 0.00 0.00 35.91 3.51
5930 6388 5.784578 TGCTAGTACAAAGTTCTGACTGA 57.215 39.130 0.00 0.00 35.91 3.41
6035 6493 4.005650 TCTTTGAGTGTCCAATGCTCATC 58.994 43.478 0.00 0.00 38.79 2.92
6168 6636 0.029834 CACTGGCTGAACTGTGTTGC 59.970 55.000 0.00 0.00 36.10 4.17
6258 6726 5.542779 CCAGTTATGGTAGCTCATCTTACC 58.457 45.833 0.00 0.00 42.17 2.85
6302 6770 4.042062 TCAGGGCTGCTACATTAATGCTAT 59.958 41.667 15.48 0.00 0.00 2.97
6362 6830 7.392673 AGCAGAATTGAACAGATGAACAGTTAT 59.607 33.333 0.00 0.00 0.00 1.89
6514 6983 5.411053 GCTCCAAGCTATTCTTATGATCACC 59.589 44.000 0.00 0.00 38.45 4.02
6675 7146 0.190815 AGCCCCAGGAACAAAATGGT 59.809 50.000 0.00 0.00 31.85 3.55
6694 7165 3.208884 GACGCCGAGGCCGATGTAT 62.209 63.158 8.72 0.00 38.22 2.29
6763 7234 2.500910 CCTCTGCAGGAAGAAGATGAGT 59.499 50.000 15.13 0.00 43.65 3.41
6778 7249 1.471119 TGAGTACCGCCCAGTAGAAG 58.529 55.000 0.00 0.00 0.00 2.85
6814 7285 2.507324 GACGAGAGCCCGAGCAAC 60.507 66.667 0.00 0.00 43.56 4.17
6832 7303 3.364441 GCAATGGTGACGCTGCCA 61.364 61.111 0.00 0.00 39.33 4.92
6851 7322 0.759346 AAGCCGGGATGATACCTGTC 59.241 55.000 2.18 0.00 34.74 3.51
6855 7326 0.104120 CGGGATGATACCTGTCGCAA 59.896 55.000 0.00 0.00 0.00 4.85
6860 7331 4.498009 GGGATGATACCTGTCGCAAAAATG 60.498 45.833 0.00 0.00 0.00 2.32
6867 7338 2.472488 CCTGTCGCAAAAATGCAAGTTC 59.528 45.455 0.00 0.00 34.41 3.01
6868 7339 3.114809 CTGTCGCAAAAATGCAAGTTCA 58.885 40.909 0.00 0.00 34.41 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.862541 TGCATGCCAACTAGACAACTT 58.137 42.857 16.68 0.00 0.00 2.66
2 3 2.749076 TCATGCATGCCAACTAGACAAC 59.251 45.455 22.25 0.00 0.00 3.32
5 6 4.384056 AGTATCATGCATGCCAACTAGAC 58.616 43.478 22.25 10.78 0.00 2.59
6 7 4.694760 AGTATCATGCATGCCAACTAGA 57.305 40.909 22.25 2.12 0.00 2.43
7 8 4.391216 GCTAGTATCATGCATGCCAACTAG 59.609 45.833 32.38 32.38 37.27 2.57
8 9 4.040829 AGCTAGTATCATGCATGCCAACTA 59.959 41.667 22.25 22.70 0.00 2.24
10 11 3.144506 AGCTAGTATCATGCATGCCAAC 58.855 45.455 22.25 17.59 0.00 3.77
11 12 3.497103 AGCTAGTATCATGCATGCCAA 57.503 42.857 22.25 5.34 0.00 4.52
12 13 4.223477 TCATAGCTAGTATCATGCATGCCA 59.777 41.667 22.25 8.84 0.00 4.92
13 14 4.763073 TCATAGCTAGTATCATGCATGCC 58.237 43.478 22.25 11.72 0.00 4.40
14 15 7.208777 AGTATCATAGCTAGTATCATGCATGC 58.791 38.462 22.25 11.82 0.00 4.06
17 18 6.322456 GGGAGTATCATAGCTAGTATCATGCA 59.678 42.308 0.00 0.00 36.25 3.96
19 20 7.888250 TGGGAGTATCATAGCTAGTATCATG 57.112 40.000 0.00 0.00 36.25 3.07
21 22 9.409918 GTAATGGGAGTATCATAGCTAGTATCA 57.590 37.037 0.00 0.00 36.25 2.15
22 23 9.409918 TGTAATGGGAGTATCATAGCTAGTATC 57.590 37.037 0.00 0.00 36.25 2.24
23 24 9.769677 TTGTAATGGGAGTATCATAGCTAGTAT 57.230 33.333 0.00 0.00 36.25 2.12
24 25 9.021807 GTTGTAATGGGAGTATCATAGCTAGTA 57.978 37.037 0.00 0.00 36.25 1.82
25 26 7.038941 GGTTGTAATGGGAGTATCATAGCTAGT 60.039 40.741 0.00 0.00 36.25 2.57
26 27 7.039011 TGGTTGTAATGGGAGTATCATAGCTAG 60.039 40.741 0.00 0.00 36.25 3.42
27 28 6.785466 TGGTTGTAATGGGAGTATCATAGCTA 59.215 38.462 0.00 0.00 36.25 3.32
28 29 5.606749 TGGTTGTAATGGGAGTATCATAGCT 59.393 40.000 0.00 0.00 36.25 3.32
29 30 5.865085 TGGTTGTAATGGGAGTATCATAGC 58.135 41.667 0.00 0.00 36.25 2.97
30 31 5.934625 GCTGGTTGTAATGGGAGTATCATAG 59.065 44.000 0.00 0.00 36.25 2.23
31 32 5.221843 GGCTGGTTGTAATGGGAGTATCATA 60.222 44.000 0.00 0.00 36.25 2.15
32 33 4.446311 GGCTGGTTGTAATGGGAGTATCAT 60.446 45.833 0.00 0.00 36.25 2.45
33 34 3.118038 GGCTGGTTGTAATGGGAGTATCA 60.118 47.826 0.00 0.00 36.25 2.15
34 35 3.136626 AGGCTGGTTGTAATGGGAGTATC 59.863 47.826 0.00 0.00 0.00 2.24
35 36 3.123273 AGGCTGGTTGTAATGGGAGTAT 58.877 45.455 0.00 0.00 0.00 2.12
36 37 2.557869 AGGCTGGTTGTAATGGGAGTA 58.442 47.619 0.00 0.00 0.00 2.59
37 38 1.372501 AGGCTGGTTGTAATGGGAGT 58.627 50.000 0.00 0.00 0.00 3.85
38 39 3.644966 TTAGGCTGGTTGTAATGGGAG 57.355 47.619 0.00 0.00 0.00 4.30
39 40 4.724798 AGTATTAGGCTGGTTGTAATGGGA 59.275 41.667 0.00 0.00 0.00 4.37
40 41 4.821805 CAGTATTAGGCTGGTTGTAATGGG 59.178 45.833 0.00 0.00 0.00 4.00
41 42 4.821805 CCAGTATTAGGCTGGTTGTAATGG 59.178 45.833 0.00 0.00 46.22 3.16
51 52 3.209410 CCTGCTTTCCAGTATTAGGCTG 58.791 50.000 0.00 0.00 40.06 4.85
52 53 2.173569 CCCTGCTTTCCAGTATTAGGCT 59.826 50.000 0.00 0.00 40.06 4.58
53 54 2.172717 TCCCTGCTTTCCAGTATTAGGC 59.827 50.000 0.00 0.00 40.06 3.93
54 55 3.181450 CCTCCCTGCTTTCCAGTATTAGG 60.181 52.174 0.00 0.00 40.06 2.69
55 56 3.181450 CCCTCCCTGCTTTCCAGTATTAG 60.181 52.174 0.00 0.00 40.06 1.73
56 57 2.777692 CCCTCCCTGCTTTCCAGTATTA 59.222 50.000 0.00 0.00 40.06 0.98
57 58 1.566231 CCCTCCCTGCTTTCCAGTATT 59.434 52.381 0.00 0.00 40.06 1.89
58 59 1.216990 CCCTCCCTGCTTTCCAGTAT 58.783 55.000 0.00 0.00 40.06 2.12
59 60 1.562672 GCCCTCCCTGCTTTCCAGTA 61.563 60.000 0.00 0.00 40.06 2.74
60 61 2.911926 GCCCTCCCTGCTTTCCAGT 61.912 63.158 0.00 0.00 40.06 4.00
61 62 2.044551 GCCCTCCCTGCTTTCCAG 60.045 66.667 0.00 0.00 41.41 3.86
62 63 3.661648 GGCCCTCCCTGCTTTCCA 61.662 66.667 0.00 0.00 0.00 3.53
76 77 0.105555 TGGATTTCATGGGATGGGCC 60.106 55.000 0.00 0.00 0.00 5.80
77 78 1.792115 TTGGATTTCATGGGATGGGC 58.208 50.000 0.00 0.00 0.00 5.36
78 79 3.576982 CTCATTGGATTTCATGGGATGGG 59.423 47.826 0.00 0.00 0.00 4.00
79 80 3.576982 CCTCATTGGATTTCATGGGATGG 59.423 47.826 0.00 0.00 38.35 3.51
80 81 3.576982 CCCTCATTGGATTTCATGGGATG 59.423 47.826 0.00 0.00 38.35 3.51
81 82 3.468244 TCCCTCATTGGATTTCATGGGAT 59.532 43.478 0.00 0.00 37.56 3.85
82 83 2.858133 TCCCTCATTGGATTTCATGGGA 59.142 45.455 0.00 0.00 39.87 4.37
83 84 3.317455 TCCCTCATTGGATTTCATGGG 57.683 47.619 0.00 0.00 38.35 4.00
84 85 4.476297 TCATCCCTCATTGGATTTCATGG 58.524 43.478 0.00 0.00 42.62 3.66
85 86 5.382616 TCTCATCCCTCATTGGATTTCATG 58.617 41.667 0.00 0.00 42.62 3.07
86 87 5.371769 TCTCTCATCCCTCATTGGATTTCAT 59.628 40.000 0.00 0.00 42.62 2.57
87 88 4.723285 TCTCTCATCCCTCATTGGATTTCA 59.277 41.667 0.00 0.00 42.62 2.69
88 89 5.301835 TCTCTCATCCCTCATTGGATTTC 57.698 43.478 0.00 0.00 42.62 2.17
89 90 5.722172 TTCTCTCATCCCTCATTGGATTT 57.278 39.130 0.00 0.00 42.62 2.17
90 91 5.722172 TTTCTCTCATCCCTCATTGGATT 57.278 39.130 0.00 0.00 42.62 3.01
91 92 5.926580 ATTTCTCTCATCCCTCATTGGAT 57.073 39.130 0.00 0.00 46.22 3.41
92 93 5.309020 CCTATTTCTCTCATCCCTCATTGGA 59.691 44.000 0.00 0.00 39.18 3.53
93 94 5.558818 CCTATTTCTCTCATCCCTCATTGG 58.441 45.833 0.00 0.00 0.00 3.16
94 95 5.002516 GCCTATTTCTCTCATCCCTCATTG 58.997 45.833 0.00 0.00 0.00 2.82
95 96 4.262808 CGCCTATTTCTCTCATCCCTCATT 60.263 45.833 0.00 0.00 0.00 2.57
96 97 3.260380 CGCCTATTTCTCTCATCCCTCAT 59.740 47.826 0.00 0.00 0.00 2.90
97 98 2.630098 CGCCTATTTCTCTCATCCCTCA 59.370 50.000 0.00 0.00 0.00 3.86
98 99 2.028567 CCGCCTATTTCTCTCATCCCTC 60.029 54.545 0.00 0.00 0.00 4.30
99 100 1.974236 CCGCCTATTTCTCTCATCCCT 59.026 52.381 0.00 0.00 0.00 4.20
100 101 1.971357 TCCGCCTATTTCTCTCATCCC 59.029 52.381 0.00 0.00 0.00 3.85
101 102 2.894126 TCTCCGCCTATTTCTCTCATCC 59.106 50.000 0.00 0.00 0.00 3.51
102 103 3.572255 AGTCTCCGCCTATTTCTCTCATC 59.428 47.826 0.00 0.00 0.00 2.92
103 104 3.571590 AGTCTCCGCCTATTTCTCTCAT 58.428 45.455 0.00 0.00 0.00 2.90
104 105 3.019799 AGTCTCCGCCTATTTCTCTCA 57.980 47.619 0.00 0.00 0.00 3.27
105 106 5.283294 GTTAAGTCTCCGCCTATTTCTCTC 58.717 45.833 0.00 0.00 0.00 3.20
106 107 4.099727 GGTTAAGTCTCCGCCTATTTCTCT 59.900 45.833 0.00 0.00 0.00 3.10
107 108 4.142004 TGGTTAAGTCTCCGCCTATTTCTC 60.142 45.833 0.00 0.00 0.00 2.87
108 109 3.773119 TGGTTAAGTCTCCGCCTATTTCT 59.227 43.478 0.00 0.00 0.00 2.52
109 110 4.133013 TGGTTAAGTCTCCGCCTATTTC 57.867 45.455 0.00 0.00 0.00 2.17
110 111 4.563140 TTGGTTAAGTCTCCGCCTATTT 57.437 40.909 0.00 0.00 0.00 1.40
111 112 4.563140 TTTGGTTAAGTCTCCGCCTATT 57.437 40.909 0.00 0.00 0.00 1.73
112 113 4.563140 TTTTGGTTAAGTCTCCGCCTAT 57.437 40.909 0.00 0.00 0.00 2.57
113 114 4.354893 TTTTTGGTTAAGTCTCCGCCTA 57.645 40.909 0.00 0.00 0.00 3.93
114 115 2.943036 TTTTGGTTAAGTCTCCGCCT 57.057 45.000 0.00 0.00 0.00 5.52
115 116 4.514781 AATTTTTGGTTAAGTCTCCGCC 57.485 40.909 0.00 0.00 0.00 6.13
116 117 6.490566 TCTAATTTTTGGTTAAGTCTCCGC 57.509 37.500 0.00 0.00 0.00 5.54
117 118 8.015658 CAGTTCTAATTTTTGGTTAAGTCTCCG 58.984 37.037 0.00 0.00 0.00 4.63
118 119 9.063615 TCAGTTCTAATTTTTGGTTAAGTCTCC 57.936 33.333 0.00 0.00 0.00 3.71
122 123 9.797556 GTGTTCAGTTCTAATTTTTGGTTAAGT 57.202 29.630 0.00 0.00 0.00 2.24
327 328 2.339403 GGCCTACCTAGTCTACGCC 58.661 63.158 0.00 0.00 0.00 5.68
366 367 2.989840 CGATCCATCTAAGATGTTCGGC 59.010 50.000 1.12 0.00 0.00 5.54
370 371 3.812053 GCAAGCGATCCATCTAAGATGTT 59.188 43.478 0.00 0.00 0.00 2.71
378 379 4.137879 GCAGCAAGCGATCCATCT 57.862 55.556 0.00 0.00 0.00 2.90
399 400 3.799755 ACGAAATGAAGCCGGCGC 61.800 61.111 23.20 18.21 0.00 6.53
407 416 5.766150 AGGACATTTTCACACGAAATGAA 57.234 34.783 14.40 5.36 43.71 2.57
418 427 6.757897 AATCGCAGAAATAGGACATTTTCA 57.242 33.333 0.00 0.00 43.58 2.69
428 437 6.428385 AGTGGAGAAAAATCGCAGAAATAG 57.572 37.500 0.00 0.00 43.58 1.73
433 442 3.997021 GAGAAGTGGAGAAAAATCGCAGA 59.003 43.478 0.00 0.00 45.75 4.26
437 446 5.948992 AAAGGAGAAGTGGAGAAAAATCG 57.051 39.130 0.00 0.00 0.00 3.34
467 476 5.008712 GTCATCTTCCGTCCAAAAAGTCTTT 59.991 40.000 0.00 0.00 0.00 2.52
468 477 4.515567 GTCATCTTCCGTCCAAAAAGTCTT 59.484 41.667 0.00 0.00 0.00 3.01
469 478 4.065789 GTCATCTTCCGTCCAAAAAGTCT 58.934 43.478 0.00 0.00 0.00 3.24
470 479 3.813166 TGTCATCTTCCGTCCAAAAAGTC 59.187 43.478 0.00 0.00 0.00 3.01
471 480 3.815809 TGTCATCTTCCGTCCAAAAAGT 58.184 40.909 0.00 0.00 0.00 2.66
472 481 6.494893 TTATGTCATCTTCCGTCCAAAAAG 57.505 37.500 0.00 0.00 0.00 2.27
474 483 6.001460 AGTTTATGTCATCTTCCGTCCAAAA 58.999 36.000 0.00 0.00 0.00 2.44
475 484 5.556915 AGTTTATGTCATCTTCCGTCCAAA 58.443 37.500 0.00 0.00 0.00 3.28
476 485 5.160607 AGTTTATGTCATCTTCCGTCCAA 57.839 39.130 0.00 0.00 0.00 3.53
477 486 4.819105 AGTTTATGTCATCTTCCGTCCA 57.181 40.909 0.00 0.00 0.00 4.02
478 487 4.571176 GGAAGTTTATGTCATCTTCCGTCC 59.429 45.833 13.32 4.37 43.80 4.79
479 488 5.720261 GGAAGTTTATGTCATCTTCCGTC 57.280 43.478 13.32 0.00 43.80 4.79
483 492 9.788960 GGTAAAATGGAAGTTTATGTCATCTTC 57.211 33.333 4.79 4.79 38.71 2.87
484 493 9.308000 TGGTAAAATGGAAGTTTATGTCATCTT 57.692 29.630 0.00 0.00 38.71 2.40
486 495 9.921637 TTTGGTAAAATGGAAGTTTATGTCATC 57.078 29.630 0.00 0.00 38.71 2.92
487 496 9.927668 CTTTGGTAAAATGGAAGTTTATGTCAT 57.072 29.630 0.00 0.00 38.71 3.06
488 497 9.137459 TCTTTGGTAAAATGGAAGTTTATGTCA 57.863 29.630 0.00 0.00 38.71 3.58
489 498 9.974980 TTCTTTGGTAAAATGGAAGTTTATGTC 57.025 29.630 0.00 0.00 38.71 3.06
494 503 8.704668 ACATCTTCTTTGGTAAAATGGAAGTTT 58.295 29.630 0.00 0.00 38.01 2.66
495 504 8.143835 CACATCTTCTTTGGTAAAATGGAAGTT 58.856 33.333 0.00 0.00 32.95 2.66
496 505 7.661040 CACATCTTCTTTGGTAAAATGGAAGT 58.339 34.615 0.00 0.00 32.95 3.01
498 507 6.041409 TGCACATCTTCTTTGGTAAAATGGAA 59.959 34.615 0.00 0.00 0.00 3.53
499 508 5.538053 TGCACATCTTCTTTGGTAAAATGGA 59.462 36.000 0.00 0.00 0.00 3.41
500 509 5.782047 TGCACATCTTCTTTGGTAAAATGG 58.218 37.500 0.00 0.00 0.00 3.16
502 511 6.655078 ACTGCACATCTTCTTTGGTAAAAT 57.345 33.333 0.00 0.00 0.00 1.82
503 512 6.995686 TCTACTGCACATCTTCTTTGGTAAAA 59.004 34.615 0.00 0.00 0.00 1.52
504 513 6.530120 TCTACTGCACATCTTCTTTGGTAAA 58.470 36.000 0.00 0.00 0.00 2.01
505 514 6.109156 TCTACTGCACATCTTCTTTGGTAA 57.891 37.500 0.00 0.00 0.00 2.85
506 515 5.738619 TCTACTGCACATCTTCTTTGGTA 57.261 39.130 0.00 0.00 0.00 3.25
509 518 4.694509 AGCTTCTACTGCACATCTTCTTTG 59.305 41.667 0.00 0.00 0.00 2.77
510 519 4.904241 AGCTTCTACTGCACATCTTCTTT 58.096 39.130 0.00 0.00 0.00 2.52
511 520 4.550076 AGCTTCTACTGCACATCTTCTT 57.450 40.909 0.00 0.00 0.00 2.52
513 522 4.248859 TCAAGCTTCTACTGCACATCTTC 58.751 43.478 0.00 0.00 0.00 2.87
522 531 3.012518 CCCCACAATCAAGCTTCTACTG 58.987 50.000 0.00 0.00 0.00 2.74
531 540 1.888512 CCACTTGTCCCCACAATCAAG 59.111 52.381 0.00 0.00 41.82 3.02
540 549 0.898789 TCTCGAGTCCACTTGTCCCC 60.899 60.000 13.13 0.00 0.00 4.81
554 563 3.565516 CATTGAAGTGAAGTCGTCTCGA 58.434 45.455 0.00 0.00 0.00 4.04
560 569 3.495193 CAATGGCATTGAAGTGAAGTCG 58.505 45.455 31.50 3.00 42.83 4.18
579 588 4.081752 ACCATCAAACTTTCACTGTTGCAA 60.082 37.500 0.00 0.00 0.00 4.08
581 590 3.798337 CACCATCAAACTTTCACTGTTGC 59.202 43.478 0.00 0.00 0.00 4.17
582 591 4.799949 CACACCATCAAACTTTCACTGTTG 59.200 41.667 0.00 0.00 0.00 3.33
583 592 4.677779 GCACACCATCAAACTTTCACTGTT 60.678 41.667 0.00 0.00 0.00 3.16
584 593 3.181487 GCACACCATCAAACTTTCACTGT 60.181 43.478 0.00 0.00 0.00 3.55
585 594 3.181488 TGCACACCATCAAACTTTCACTG 60.181 43.478 0.00 0.00 0.00 3.66
586 595 3.023119 TGCACACCATCAAACTTTCACT 58.977 40.909 0.00 0.00 0.00 3.41
587 596 3.115554 GTGCACACCATCAAACTTTCAC 58.884 45.455 13.17 0.00 0.00 3.18
588 597 2.757314 TGTGCACACCATCAAACTTTCA 59.243 40.909 17.42 0.00 0.00 2.69
589 598 3.435105 TGTGCACACCATCAAACTTTC 57.565 42.857 17.42 0.00 0.00 2.62
590 599 4.559300 GCTATGTGCACACCATCAAACTTT 60.559 41.667 24.37 3.83 42.31 2.66
591 600 3.057315 GCTATGTGCACACCATCAAACTT 60.057 43.478 24.37 4.41 42.31 2.66
592 601 2.489329 GCTATGTGCACACCATCAAACT 59.511 45.455 24.37 5.25 42.31 2.66
593 602 2.867429 GCTATGTGCACACCATCAAAC 58.133 47.619 24.37 2.18 42.31 2.93
623 988 0.393537 GTGCTCAATCTGGTCTGGGG 60.394 60.000 0.00 0.00 0.00 4.96
626 991 2.483106 CTGTTGTGCTCAATCTGGTCTG 59.517 50.000 4.26 0.00 35.92 3.51
627 992 2.105477 ACTGTTGTGCTCAATCTGGTCT 59.895 45.455 4.26 0.00 35.92 3.85
639 1005 2.639327 GGGGCATGGACTGTTGTGC 61.639 63.158 0.00 4.95 36.88 4.57
641 1007 1.380302 GAGGGGCATGGACTGTTGT 59.620 57.895 0.00 0.00 0.00 3.32
652 1018 5.199982 TGAAATAAAATAGGTGAGGGGCA 57.800 39.130 0.00 0.00 0.00 5.36
843 1213 2.520741 CGAGGGGAGAGGAGGAGC 60.521 72.222 0.00 0.00 0.00 4.70
892 1284 2.698763 GGTGTCCTCGGTCTCGGTC 61.699 68.421 0.00 0.00 36.95 4.79
1230 1636 2.967397 CTCGTGTCCTTACCGGCA 59.033 61.111 0.00 0.00 0.00 5.69
1257 1664 1.069935 GGTCTGGATAGGGAAGCGC 59.930 63.158 0.00 0.00 0.00 5.92
1265 1672 1.453762 GGACGGACGGGTCTGGATAG 61.454 65.000 12.00 0.00 40.22 2.08
1266 1673 1.454479 GGACGGACGGGTCTGGATA 60.454 63.158 12.00 0.00 40.22 2.59
1267 1674 2.758737 GGACGGACGGGTCTGGAT 60.759 66.667 12.00 0.00 40.22 3.41
1305 1714 2.604139 TCGCCAAAGGGGAAAGAAAAT 58.396 42.857 0.00 0.00 41.69 1.82
1559 1969 2.607442 ATTGGCCCCCAACCTTGC 60.607 61.111 0.00 0.00 46.95 4.01
1573 1983 6.573664 TTTACAATGGTGAAGTCCAGATTG 57.426 37.500 0.00 0.00 41.05 2.67
1594 2004 9.198837 CAAACCGGCTAAATGTAAGTTAAATTT 57.801 29.630 14.16 14.16 0.00 1.82
1599 2009 5.122711 GCTCAAACCGGCTAAATGTAAGTTA 59.877 40.000 0.00 0.00 0.00 2.24
1602 2012 3.689649 AGCTCAAACCGGCTAAATGTAAG 59.310 43.478 0.00 0.00 37.00 2.34
1650 2061 2.557920 AGAGTGGAGGCTCAAACTTG 57.442 50.000 17.69 0.00 37.94 3.16
2059 2470 3.640967 ACTCTGCTTTGCAACCCAAAATA 59.359 39.130 0.00 0.00 42.51 1.40
2097 2508 0.251474 TGGTAGTGTGGACCGTAGCT 60.251 55.000 0.00 0.00 40.09 3.32
2171 2582 2.662006 TCTAGATCACTGCACTGCAC 57.338 50.000 0.00 0.00 33.79 4.57
2173 2584 3.244033 ACTTCTAGATCACTGCACTGC 57.756 47.619 0.00 0.00 0.00 4.40
2174 2585 9.838975 CTTATATACTTCTAGATCACTGCACTG 57.161 37.037 0.00 0.00 0.00 3.66
2175 2586 9.800572 TCTTATATACTTCTAGATCACTGCACT 57.199 33.333 0.00 0.00 0.00 4.40
2255 2666 2.482864 GTTTGGCATTCAGGTTTGGTG 58.517 47.619 0.00 0.00 0.00 4.17
2302 2713 4.326548 GCTAAACTCTAACTAACAGCACCG 59.673 45.833 0.00 0.00 0.00 4.94
2411 2829 3.060272 CACATTAACTAGGCAAGCGATCG 60.060 47.826 11.69 11.69 0.00 3.69
2424 2842 5.619086 GCGGCTTGATTACAACACATTAACT 60.619 40.000 0.00 0.00 32.27 2.24
2443 2861 2.226674 GCTAAAAGAAAAGAGTGCGGCT 59.773 45.455 0.00 0.00 0.00 5.52
2445 2863 5.500931 CGATAGCTAAAAGAAAAGAGTGCGG 60.501 44.000 0.00 0.00 0.00 5.69
2446 2864 5.484958 CGATAGCTAAAAGAAAAGAGTGCG 58.515 41.667 0.00 0.00 0.00 5.34
2468 2886 1.966493 ATTGCACGTCCTAAAGCGCG 61.966 55.000 0.00 0.00 0.00 6.86
2749 3168 9.283768 ACATGACAATCAAGTACACTTCAAATA 57.716 29.630 0.00 0.00 33.11 1.40
2967 3386 5.824904 ACCAATCAAGACAAGTATCATGC 57.175 39.130 0.00 0.00 0.00 4.06
3003 3422 6.428159 CACTATCACTAAGTAATTGCATCCCC 59.572 42.308 0.00 0.00 0.00 4.81
3500 3919 7.551262 ACCGTGATAGCAGTTTTGTGAATTATA 59.449 33.333 0.00 0.00 0.00 0.98
3513 3932 5.304614 ACTTTATATCCACCGTGATAGCAGT 59.695 40.000 0.00 0.00 31.09 4.40
3559 3978 9.271828 TGGTGTATGATATTATAAAGTGCTGTG 57.728 33.333 0.00 0.00 0.00 3.66
3598 4017 6.550481 TGCTTGCAGATCCAAAATAATATCCA 59.450 34.615 0.00 0.00 0.00 3.41
3656 4075 5.163774 ACGAAGTTATGAGACGAGGAAGTAC 60.164 44.000 0.00 0.00 37.78 2.73
3691 4110 9.376075 CTCAAAAGTGCTATCTCTGAGATAAAA 57.624 33.333 23.57 14.23 36.81 1.52
3782 4202 9.550406 TTACCAATCCCGTAAAAATATAGACAG 57.450 33.333 0.00 0.00 0.00 3.51
3814 4241 7.203255 AGAAGACTTCCTAAAAATGGAAACG 57.797 36.000 11.67 0.00 42.29 3.60
3828 4255 9.157104 CCAAAAACTAGATTCTAGAAGACTTCC 57.843 37.037 24.24 0.00 0.00 3.46
3864 4291 7.501844 AGAGTACTCATCATACTTAAAAGGGC 58.498 38.462 24.44 0.00 32.93 5.19
3924 4351 3.758554 ACCAAGTAATGCTCATGTTCCAC 59.241 43.478 0.00 0.00 0.00 4.02
3977 4404 5.202765 TGTGGAATTATGTGGATTGCTGAT 58.797 37.500 0.00 0.00 0.00 2.90
4049 4476 3.332034 ACTCGTACACCATAAAAGTGGC 58.668 45.455 0.00 0.00 43.27 5.01
4059 4486 3.949754 CAGGGAAGTATACTCGTACACCA 59.050 47.826 5.70 0.00 0.00 4.17
4063 4490 4.880696 AGACACAGGGAAGTATACTCGTAC 59.119 45.833 5.70 0.00 0.00 3.67
4064 4491 5.108187 AGACACAGGGAAGTATACTCGTA 57.892 43.478 5.70 0.00 0.00 3.43
4065 4492 3.965694 AGACACAGGGAAGTATACTCGT 58.034 45.455 5.70 0.00 0.00 4.18
4066 4493 4.641094 AGAAGACACAGGGAAGTATACTCG 59.359 45.833 5.70 0.00 0.00 4.18
4067 4494 5.652891 TCAGAAGACACAGGGAAGTATACTC 59.347 44.000 5.70 0.01 0.00 2.59
4079 4507 9.918630 AAATCCAAAATAATTCAGAAGACACAG 57.081 29.630 0.00 0.00 0.00 3.66
4089 4517 9.206870 GTCTGCTTGAAAATCCAAAATAATTCA 57.793 29.630 0.00 0.00 0.00 2.57
4137 4565 6.594547 CCATGATGAAGCTATGAGACAATAGG 59.405 42.308 0.00 0.00 31.82 2.57
4169 4597 9.606631 AAATGAATCAAAGGTACTATCTCTGAC 57.393 33.333 0.00 0.00 38.49 3.51
4203 4634 9.219603 CCAATAATTCGGAAGCTTGAGATAATA 57.780 33.333 2.10 0.00 0.00 0.98
4204 4635 7.939039 TCCAATAATTCGGAAGCTTGAGATAAT 59.061 33.333 2.10 0.00 0.00 1.28
4205 4636 7.226720 GTCCAATAATTCGGAAGCTTGAGATAA 59.773 37.037 2.10 0.00 31.67 1.75
4206 4637 6.706270 GTCCAATAATTCGGAAGCTTGAGATA 59.294 38.462 2.10 0.00 31.67 1.98
4207 4638 5.529060 GTCCAATAATTCGGAAGCTTGAGAT 59.471 40.000 2.10 0.00 31.67 2.75
4208 4639 4.876107 GTCCAATAATTCGGAAGCTTGAGA 59.124 41.667 2.10 0.00 31.67 3.27
4209 4640 4.878397 AGTCCAATAATTCGGAAGCTTGAG 59.122 41.667 2.10 0.00 31.67 3.02
4210 4641 4.635765 CAGTCCAATAATTCGGAAGCTTGA 59.364 41.667 2.10 0.00 31.67 3.02
4211 4642 4.635765 TCAGTCCAATAATTCGGAAGCTTG 59.364 41.667 2.10 0.00 31.67 4.01
4212 4643 4.843728 TCAGTCCAATAATTCGGAAGCTT 58.156 39.130 0.00 0.00 31.67 3.74
4213 4644 4.487714 TCAGTCCAATAATTCGGAAGCT 57.512 40.909 0.00 0.00 31.67 3.74
4214 4645 4.876107 TCTTCAGTCCAATAATTCGGAAGC 59.124 41.667 0.00 0.00 34.15 3.86
4215 4646 7.559590 AATCTTCAGTCCAATAATTCGGAAG 57.440 36.000 0.00 0.00 34.95 3.46
4216 4647 7.938140 AAATCTTCAGTCCAATAATTCGGAA 57.062 32.000 0.00 0.00 31.67 4.30
4217 4648 7.938140 AAAATCTTCAGTCCAATAATTCGGA 57.062 32.000 0.00 0.00 0.00 4.55
4218 4649 8.893727 AGTAAAATCTTCAGTCCAATAATTCGG 58.106 33.333 0.00 0.00 0.00 4.30
4221 4652 9.860898 GCAAGTAAAATCTTCAGTCCAATAATT 57.139 29.630 0.00 0.00 0.00 1.40
4222 4653 8.470002 GGCAAGTAAAATCTTCAGTCCAATAAT 58.530 33.333 0.00 0.00 0.00 1.28
4223 4654 7.669722 AGGCAAGTAAAATCTTCAGTCCAATAA 59.330 33.333 0.00 0.00 0.00 1.40
4284 4715 7.475299 TGGAACCCCAAAACTAGATTCTAAAT 58.525 34.615 0.00 0.00 40.09 1.40
4384 4815 2.977580 TCTTGATGGAGGATCTGGATGG 59.022 50.000 0.00 0.00 33.73 3.51
4492 4923 5.105877 TGTTGACGGTCTCGAAGAATTAGAT 60.106 40.000 9.88 0.00 40.11 1.98
4510 4941 3.030652 CGCCCAGTTGGTGTTGAC 58.969 61.111 0.00 0.00 39.95 3.18
4525 4956 4.152625 GTGGTCGATGCAGCACGC 62.153 66.667 1.53 0.78 42.89 5.34
4652 5083 2.564771 CAGTGCTGACCTTGTTGAAGA 58.435 47.619 0.00 0.00 0.00 2.87
4834 5292 5.104193 AGGCATTGATGATCTTGAAGTAGGT 60.104 40.000 0.00 0.00 0.00 3.08
4885 5343 1.995626 TGCTGGTAAGGAGGGCCTC 60.996 63.158 25.80 25.80 46.28 4.70
4962 5420 0.107831 GTTACTGTGCTGGGTGTGGA 59.892 55.000 0.00 0.00 0.00 4.02
4987 5445 0.041238 AGGAGGATCGAACTGGTCCA 59.959 55.000 4.88 0.00 34.37 4.02
5314 5772 1.376037 GGAACTCCCTGAAGGCACG 60.376 63.158 0.00 0.00 34.51 5.34
5365 5823 4.475527 GGGTTCACACTGTCACCC 57.524 61.111 9.53 9.53 42.33 4.61
5477 5935 7.283127 TGGAGAATTTAATGATTTTCCGGAGAG 59.717 37.037 3.34 0.00 41.07 3.20
5479 5937 7.283127 TCTGGAGAATTTAATGATTTTCCGGAG 59.717 37.037 13.35 4.67 44.45 4.63
5518 5976 5.160607 ACTTCTTTGATAATGACCGACCA 57.839 39.130 0.00 0.00 0.00 4.02
5530 5988 4.330250 CCATGTCCAGTGACTTCTTTGAT 58.670 43.478 0.00 0.00 42.28 2.57
5594 6052 3.641437 TGGAGAAGTTTTTGGCATTCG 57.359 42.857 0.00 0.00 0.00 3.34
5598 6056 4.070630 CCAAATGGAGAAGTTTTTGGCA 57.929 40.909 3.65 0.00 41.00 4.92
5614 6072 9.941325 TGCACATCAGATTTAATTTAACCAAAT 57.059 25.926 0.00 0.00 35.84 2.32
5635 6093 2.429971 TCCTGCAGAACAAAATTGCACA 59.570 40.909 17.39 0.00 42.41 4.57
5639 6097 4.853196 CGTATGTCCTGCAGAACAAAATTG 59.147 41.667 10.74 0.00 0.00 2.32
5646 6104 1.421410 CGCCGTATGTCCTGCAGAAC 61.421 60.000 17.39 5.41 0.00 3.01
5647 6105 1.153647 CGCCGTATGTCCTGCAGAA 60.154 57.895 17.39 0.00 0.00 3.02
5649 6107 3.264897 GCGCCGTATGTCCTGCAG 61.265 66.667 6.78 6.78 0.00 4.41
5780 6238 4.824166 GCATTGCTGCTGGTCGCG 62.824 66.667 0.00 0.00 45.32 5.87
5929 6387 5.295431 TGTGGTCGTGAAAATTCATCATC 57.705 39.130 0.00 0.00 39.73 2.92
5930 6388 5.703978 TTGTGGTCGTGAAAATTCATCAT 57.296 34.783 0.00 0.00 39.73 2.45
6035 6493 2.029649 GCAGCCCACATAGCATAAATGG 60.030 50.000 0.00 0.00 31.35 3.16
6168 6636 7.810766 ATTTACATTGCGATACAACAAAAGG 57.189 32.000 0.00 0.00 42.27 3.11
6256 6724 5.200483 ACATTATGGGATTCAACATTCGGT 58.800 37.500 0.00 0.00 0.00 4.69
6258 6726 6.375945 TGACATTATGGGATTCAACATTCG 57.624 37.500 0.00 0.00 0.00 3.34
6302 6770 7.494952 TCATGACAGATTTTTGCAACATTTCAA 59.505 29.630 0.00 0.00 0.00 2.69
6362 6830 0.107703 CCAGTTCATTGCTCCGGCTA 60.108 55.000 0.00 0.00 39.59 3.93
6514 6983 1.097232 TGCCATCTTTGCGATTCCTG 58.903 50.000 0.00 0.00 0.00 3.86
6763 7234 3.625099 GCCTTCTACTGGGCGGTA 58.375 61.111 0.00 0.00 38.91 4.02
6814 7285 4.465512 GGCAGCGTCACCATTGCG 62.466 66.667 0.00 0.00 37.43 4.85
6832 7303 0.759346 GACAGGTATCATCCCGGCTT 59.241 55.000 0.00 0.00 0.00 4.35
6851 7322 2.472816 ACCTGAACTTGCATTTTTGCG 58.527 42.857 0.00 0.00 37.69 4.85
6855 7326 5.302568 TCTGATGAACCTGAACTTGCATTTT 59.697 36.000 0.00 0.00 0.00 1.82
6860 7331 2.746362 CCTCTGATGAACCTGAACTTGC 59.254 50.000 0.00 0.00 0.00 4.01
6867 7338 0.325933 TGCACCCTCTGATGAACCTG 59.674 55.000 0.00 0.00 0.00 4.00
6868 7339 1.293062 ATGCACCCTCTGATGAACCT 58.707 50.000 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.