Multiple sequence alignment - TraesCS3B01G067300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G067300 chr3B 100.000 6276 0 0 1 6276 39899743 39906018 0.000000e+00 11590
1 TraesCS3B01G067300 chr3B 87.895 380 36 9 1805 2177 39901360 39901736 7.470000e-119 438
2 TraesCS3B01G067300 chr3B 87.895 380 36 9 1618 1994 39901547 39901919 7.470000e-119 438
3 TraesCS3B01G067300 chr3B 99.225 129 1 0 1 129 194314695 194314823 3.780000e-57 233
4 TraesCS3B01G067300 chr3B 82.383 193 24 8 1992 2177 39901360 39901549 6.510000e-35 159
5 TraesCS3B01G067300 chr3B 82.383 193 24 8 1618 1807 39901734 39901919 6.510000e-35 159
6 TraesCS3B01G067300 chr3D 92.756 4942 231 39 1362 6267 22373316 22368466 0.000000e+00 7025
7 TraesCS3B01G067300 chr3D 91.880 665 38 12 695 1354 22374197 22373544 0.000000e+00 915
8 TraesCS3B01G067300 chr3D 93.103 522 33 3 130 649 22374729 22374209 0.000000e+00 761
9 TraesCS3B01G067300 chr3D 89.645 338 28 6 1805 2138 22373067 22372733 2.090000e-114 424
10 TraesCS3B01G067300 chr3D 85.938 384 40 10 1618 1994 22372880 22372504 1.270000e-106 398
11 TraesCS3B01G067300 chr3D 82.902 193 23 8 1618 1807 22372689 22372504 1.400000e-36 165
12 TraesCS3B01G067300 chr3D 82.902 193 23 9 1992 2177 22373067 22372878 1.400000e-36 165
13 TraesCS3B01G067300 chr3A 91.153 2792 169 31 3493 6258 32122353 32119614 0.000000e+00 3716
14 TraesCS3B01G067300 chr3A 89.057 2047 131 38 683 2680 32125144 32123142 0.000000e+00 2453
15 TraesCS3B01G067300 chr3A 94.309 738 30 7 2760 3494 32123127 32122399 0.000000e+00 1120
16 TraesCS3B01G067300 chr3A 94.385 374 20 1 130 502 32126921 32126548 1.960000e-159 573
17 TraesCS3B01G067300 chr3A 87.105 380 39 8 1805 2177 32124227 32123851 7.520000e-114 422
18 TraesCS3B01G067300 chr3A 86.280 379 43 8 1618 1994 32124040 32123669 2.720000e-108 403
19 TraesCS3B01G067300 chr3A 88.079 151 16 2 500 649 32125293 32125144 1.800000e-40 178
20 TraesCS3B01G067300 chr3A 82.292 192 25 7 1618 1807 32123853 32123669 2.340000e-34 158
21 TraesCS3B01G067300 chr3A 81.865 193 25 8 1992 2177 32124227 32124038 3.030000e-33 154
22 TraesCS3B01G067300 chr4B 99.225 129 1 0 1 129 126623522 126623394 3.780000e-57 233
23 TraesCS3B01G067300 chr4B 98.450 129 2 0 1 129 126615985 126615857 1.760000e-55 228
24 TraesCS3B01G067300 chr4B 98.450 129 2 0 1 129 396133831 396133703 1.760000e-55 228
25 TraesCS3B01G067300 chr4B 98.450 129 2 0 1 129 396141364 396141236 1.760000e-55 228
26 TraesCS3B01G067300 chr2B 99.225 129 1 0 1 129 235019556 235019684 3.780000e-57 233
27 TraesCS3B01G067300 chr2B 98.450 129 2 0 1 129 235012466 235012594 1.760000e-55 228
28 TraesCS3B01G067300 chr7B 98.450 129 2 0 1 129 141400360 141400488 1.760000e-55 228
29 TraesCS3B01G067300 chr7B 98.450 129 2 0 1 129 141408255 141408383 1.760000e-55 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G067300 chr3B 39899743 39906018 6275 False 11590.000000 11590 100.000000 1 6276 1 chr3B.!!$F1 6275
1 TraesCS3B01G067300 chr3B 39901360 39901919 559 False 298.500000 438 85.139000 1618 2177 4 chr3B.!!$F3 559
2 TraesCS3B01G067300 chr3D 22368466 22374729 6263 True 1407.571429 7025 88.446571 130 6267 7 chr3D.!!$R1 6137
3 TraesCS3B01G067300 chr3A 32119614 32126921 7307 True 1019.666667 3716 88.280556 130 6258 9 chr3A.!!$R1 6128

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.034896 ATCCGTGCCTGAAACGTCTT 59.965 50.0 0.00 0.00 39.38 3.01 F
667 1926 0.101939 GACTTTCCTAGTACCGGCGG 59.898 60.0 27.06 27.06 37.17 6.13 F
906 2172 0.375106 GCCGCCGAAAAGATCTCTTG 59.625 55.0 0.00 0.00 36.12 3.02 F
2251 3763 0.468226 TGAAGGTGACCGCTGTTTCT 59.532 50.0 0.00 0.00 0.00 2.52 F
3982 5575 0.541863 TTCCTAGCTGGCAGGTAAGC 59.458 55.0 24.90 7.71 39.82 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 3011 0.399454 ACACTGCAAGATGCTCTGGT 59.601 50.000 3.78 0.0 45.31 4.00 R
2239 3751 1.940613 ACTGAAACAGAAACAGCGGTC 59.059 47.619 5.76 0.0 35.18 4.79 R
2690 4227 0.179121 TGGTCATGTCGCCACGTATC 60.179 55.000 0.00 0.0 0.00 2.24 R
4036 5630 1.536766 TGACAATTTGCCAAGCGAGAG 59.463 47.619 0.00 0.0 0.00 3.20 R
5699 7309 0.029834 CACTGGCTGAACTGTGTTGC 59.970 55.000 0.00 0.0 36.10 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.654663 TCATGCATCATGTTTAAATTTCATGAA 57.345 25.926 19.21 3.38 46.66 2.57
30 31 9.491675 TGCATCATGTTTAAATTTCATGAAACT 57.508 25.926 22.71 9.92 46.66 2.66
41 42 6.684897 ATTTCATGAAACTTGAAATGGGGA 57.315 33.333 22.71 0.00 46.65 4.81
42 43 6.684897 TTTCATGAAACTTGAAATGGGGAT 57.315 33.333 16.91 0.00 37.97 3.85
43 44 6.684897 TTCATGAAACTTGAAATGGGGATT 57.315 33.333 5.45 0.00 30.44 3.01
44 45 6.040209 TCATGAAACTTGAAATGGGGATTG 57.960 37.500 0.00 0.00 0.00 2.67
45 46 5.543405 TCATGAAACTTGAAATGGGGATTGT 59.457 36.000 0.00 0.00 0.00 2.71
46 47 5.467035 TGAAACTTGAAATGGGGATTGTC 57.533 39.130 0.00 0.00 0.00 3.18
47 48 4.022416 TGAAACTTGAAATGGGGATTGTCG 60.022 41.667 0.00 0.00 0.00 4.35
48 49 3.433306 ACTTGAAATGGGGATTGTCGA 57.567 42.857 0.00 0.00 0.00 4.20
49 50 3.761897 ACTTGAAATGGGGATTGTCGAA 58.238 40.909 0.00 0.00 0.00 3.71
50 51 4.148838 ACTTGAAATGGGGATTGTCGAAA 58.851 39.130 0.00 0.00 0.00 3.46
51 52 4.022329 ACTTGAAATGGGGATTGTCGAAAC 60.022 41.667 0.00 0.00 0.00 2.78
52 53 2.823154 TGAAATGGGGATTGTCGAAACC 59.177 45.455 0.00 0.00 0.00 3.27
53 54 1.847328 AATGGGGATTGTCGAAACCC 58.153 50.000 8.39 8.39 42.39 4.11
56 57 2.868253 GGGATTGTCGAAACCCCAG 58.132 57.895 7.26 0.00 38.08 4.45
57 58 1.313091 GGGATTGTCGAAACCCCAGC 61.313 60.000 7.26 0.00 38.08 4.85
58 59 0.608035 GGATTGTCGAAACCCCAGCA 60.608 55.000 0.00 0.00 0.00 4.41
59 60 0.804989 GATTGTCGAAACCCCAGCAG 59.195 55.000 0.00 0.00 0.00 4.24
60 61 1.244019 ATTGTCGAAACCCCAGCAGC 61.244 55.000 0.00 0.00 0.00 5.25
61 62 2.281484 GTCGAAACCCCAGCAGCA 60.281 61.111 0.00 0.00 0.00 4.41
62 63 1.896660 GTCGAAACCCCAGCAGCAA 60.897 57.895 0.00 0.00 0.00 3.91
63 64 1.152860 TCGAAACCCCAGCAGCAAA 60.153 52.632 0.00 0.00 0.00 3.68
64 65 0.539438 TCGAAACCCCAGCAGCAAAT 60.539 50.000 0.00 0.00 0.00 2.32
65 66 0.388907 CGAAACCCCAGCAGCAAATG 60.389 55.000 0.00 0.00 0.00 2.32
66 67 0.037046 GAAACCCCAGCAGCAAATGG 60.037 55.000 0.00 0.00 36.27 3.16
67 68 0.471591 AAACCCCAGCAGCAAATGGA 60.472 50.000 0.57 0.00 39.02 3.41
68 69 0.471591 AACCCCAGCAGCAAATGGAA 60.472 50.000 0.57 0.00 39.02 3.53
69 70 0.252375 ACCCCAGCAGCAAATGGAAT 60.252 50.000 0.57 0.00 39.02 3.01
70 71 0.906775 CCCCAGCAGCAAATGGAATT 59.093 50.000 0.57 0.00 39.02 2.17
71 72 1.134610 CCCCAGCAGCAAATGGAATTC 60.135 52.381 0.57 0.00 39.02 2.17
72 73 1.551430 CCCAGCAGCAAATGGAATTCA 59.449 47.619 7.93 0.00 39.02 2.57
73 74 2.027929 CCCAGCAGCAAATGGAATTCAA 60.028 45.455 7.93 0.00 39.02 2.69
74 75 2.997986 CCAGCAGCAAATGGAATTCAAC 59.002 45.455 7.93 0.00 39.02 3.18
75 76 2.997986 CAGCAGCAAATGGAATTCAACC 59.002 45.455 7.93 0.00 33.67 3.77
76 77 2.633967 AGCAGCAAATGGAATTCAACCA 59.366 40.909 7.93 0.00 33.67 3.67
77 78 2.997986 GCAGCAAATGGAATTCAACCAG 59.002 45.455 7.93 0.00 40.89 4.00
78 79 3.592059 CAGCAAATGGAATTCAACCAGG 58.408 45.455 7.93 0.00 40.89 4.45
79 80 3.007182 CAGCAAATGGAATTCAACCAGGT 59.993 43.478 7.93 0.00 40.89 4.00
80 81 3.647590 AGCAAATGGAATTCAACCAGGTT 59.352 39.130 7.93 0.00 40.89 3.50
81 82 3.996363 GCAAATGGAATTCAACCAGGTTC 59.004 43.478 0.12 0.00 40.89 3.62
82 83 4.502950 GCAAATGGAATTCAACCAGGTTCA 60.503 41.667 0.12 0.00 40.89 3.18
83 84 5.609423 CAAATGGAATTCAACCAGGTTCAA 58.391 37.500 0.12 0.00 40.89 2.69
84 85 5.885449 AATGGAATTCAACCAGGTTCAAA 57.115 34.783 0.12 0.11 40.89 2.69
85 86 4.664150 TGGAATTCAACCAGGTTCAAAC 57.336 40.909 0.12 0.00 33.22 2.93
86 87 4.285863 TGGAATTCAACCAGGTTCAAACT 58.714 39.130 0.12 0.00 33.22 2.66
87 88 4.714308 TGGAATTCAACCAGGTTCAAACTT 59.286 37.500 0.12 0.00 33.22 2.66
88 89 5.894393 TGGAATTCAACCAGGTTCAAACTTA 59.106 36.000 0.12 0.00 33.22 2.24
89 90 6.381420 TGGAATTCAACCAGGTTCAAACTTAA 59.619 34.615 0.12 0.00 33.22 1.85
90 91 7.093289 TGGAATTCAACCAGGTTCAAACTTAAA 60.093 33.333 0.12 0.00 33.22 1.52
91 92 7.931407 GGAATTCAACCAGGTTCAAACTTAAAT 59.069 33.333 0.12 0.00 0.00 1.40
92 93 8.887036 AATTCAACCAGGTTCAAACTTAAATC 57.113 30.769 0.12 0.00 0.00 2.17
93 94 7.654022 TTCAACCAGGTTCAAACTTAAATCT 57.346 32.000 0.12 0.00 0.00 2.40
94 95 7.654022 TCAACCAGGTTCAAACTTAAATCTT 57.346 32.000 0.12 0.00 0.00 2.40
95 96 8.073467 TCAACCAGGTTCAAACTTAAATCTTT 57.927 30.769 0.12 0.00 0.00 2.52
96 97 8.536175 TCAACCAGGTTCAAACTTAAATCTTTT 58.464 29.630 0.12 0.00 0.00 2.27
97 98 8.817100 CAACCAGGTTCAAACTTAAATCTTTTC 58.183 33.333 0.12 0.00 0.00 2.29
98 99 8.073467 ACCAGGTTCAAACTTAAATCTTTTCA 57.927 30.769 0.00 0.00 0.00 2.69
99 100 8.536175 ACCAGGTTCAAACTTAAATCTTTTCAA 58.464 29.630 0.00 0.00 0.00 2.69
100 101 9.546428 CCAGGTTCAAACTTAAATCTTTTCAAT 57.454 29.630 0.00 0.00 0.00 2.57
106 107 9.927668 TCAAACTTAAATCTTTTCAATGATCCC 57.072 29.630 0.00 0.00 0.00 3.85
107 108 9.709495 CAAACTTAAATCTTTTCAATGATCCCA 57.291 29.630 0.00 0.00 0.00 4.37
110 111 9.710900 ACTTAAATCTTTTCAATGATCCCAAAC 57.289 29.630 0.00 0.00 0.00 2.93
111 112 9.933723 CTTAAATCTTTTCAATGATCCCAAACT 57.066 29.630 0.00 0.00 0.00 2.66
112 113 9.709495 TTAAATCTTTTCAATGATCCCAAACTG 57.291 29.630 0.00 0.00 0.00 3.16
113 114 5.138125 TCTTTTCAATGATCCCAAACTGC 57.862 39.130 0.00 0.00 0.00 4.40
114 115 3.959535 TTTCAATGATCCCAAACTGCC 57.040 42.857 0.00 0.00 0.00 4.85
115 116 2.905415 TCAATGATCCCAAACTGCCT 57.095 45.000 0.00 0.00 0.00 4.75
116 117 3.173953 TCAATGATCCCAAACTGCCTT 57.826 42.857 0.00 0.00 0.00 4.35
117 118 3.509442 TCAATGATCCCAAACTGCCTTT 58.491 40.909 0.00 0.00 0.00 3.11
118 119 3.258872 TCAATGATCCCAAACTGCCTTTG 59.741 43.478 0.00 0.00 39.31 2.77
128 129 4.440880 CAAACTGCCTTTGGAAATGTTCA 58.559 39.130 0.00 0.00 36.35 3.18
164 165 5.278610 CCTCTTGATCACACAAAAAGCATGA 60.279 40.000 0.00 0.00 0.00 3.07
201 202 0.034896 ATCCGTGCCTGAAACGTCTT 59.965 50.000 0.00 0.00 39.38 3.01
204 205 1.217882 CGTGCCTGAAACGTCTTTCT 58.782 50.000 1.96 0.00 37.30 2.52
301 302 2.108168 CTTCCTCTACCGATGTTGGGA 58.892 52.381 0.00 0.00 0.00 4.37
303 304 0.105039 CCTCTACCGATGTTGGGAGC 59.895 60.000 0.00 0.00 40.08 4.70
304 305 0.249073 CTCTACCGATGTTGGGAGCG 60.249 60.000 0.00 0.00 40.08 5.03
344 346 2.602211 GTCACTGACATCGCTCTTCATG 59.398 50.000 4.17 0.00 32.09 3.07
348 350 1.914634 GACATCGCTCTTCATGTCGT 58.085 50.000 0.00 0.00 39.58 4.34
355 357 1.078759 CTCTTCATGTCGTGCCGGTC 61.079 60.000 1.90 0.00 0.00 4.79
359 361 1.447663 CATGTCGTGCCGGTCATCA 60.448 57.895 1.90 3.94 0.00 3.07
425 427 0.325484 CCCTCCCCATTTGCCATCAA 60.325 55.000 0.00 0.00 0.00 2.57
491 493 2.230992 TGCACAACAATCTTATGGTGGC 59.769 45.455 0.00 0.00 42.42 5.01
525 1784 9.277783 GTTGCTCATCCTAACATATTCAACTAT 57.722 33.333 0.00 0.00 0.00 2.12
526 1785 8.837788 TGCTCATCCTAACATATTCAACTATG 57.162 34.615 0.00 0.00 35.61 2.23
527 1786 7.388776 TGCTCATCCTAACATATTCAACTATGC 59.611 37.037 0.00 0.00 33.26 3.14
533 1792 6.432162 CCTAACATATTCAACTATGCAGCCAT 59.568 38.462 0.00 0.00 33.26 4.40
534 1793 5.700722 ACATATTCAACTATGCAGCCATG 57.299 39.130 0.00 0.00 33.26 3.66
575 1834 2.761071 GGCTTCTTCTGCCTTCTCG 58.239 57.895 0.00 0.00 46.38 4.04
649 1908 2.025155 GGCGGTCTGTCTGATTCTAGA 58.975 52.381 0.00 0.00 0.00 2.43
651 1910 2.685897 GCGGTCTGTCTGATTCTAGACT 59.314 50.000 13.66 0.00 45.70 3.24
652 1911 3.129638 GCGGTCTGTCTGATTCTAGACTT 59.870 47.826 13.66 0.00 45.70 3.01
655 1914 5.656480 GGTCTGTCTGATTCTAGACTTTCC 58.344 45.833 13.66 10.27 45.70 3.13
656 1915 5.420739 GGTCTGTCTGATTCTAGACTTTCCT 59.579 44.000 13.66 0.00 45.70 3.36
658 1917 7.201785 GGTCTGTCTGATTCTAGACTTTCCTAG 60.202 44.444 13.66 0.00 45.70 3.02
659 1918 7.338449 GTCTGTCTGATTCTAGACTTTCCTAGT 59.662 40.741 13.66 0.00 45.70 2.57
660 1919 8.549731 TCTGTCTGATTCTAGACTTTCCTAGTA 58.450 37.037 13.66 0.00 45.70 1.82
661 1920 8.508883 TGTCTGATTCTAGACTTTCCTAGTAC 57.491 38.462 13.66 0.00 45.70 2.73
662 1921 7.556996 TGTCTGATTCTAGACTTTCCTAGTACC 59.443 40.741 13.66 0.00 45.70 3.34
663 1922 6.766944 TCTGATTCTAGACTTTCCTAGTACCG 59.233 42.308 0.00 0.00 37.17 4.02
664 1923 5.826737 TGATTCTAGACTTTCCTAGTACCGG 59.173 44.000 0.00 0.00 37.17 5.28
665 1924 3.549794 TCTAGACTTTCCTAGTACCGGC 58.450 50.000 0.00 0.00 37.17 6.13
666 1925 1.101331 AGACTTTCCTAGTACCGGCG 58.899 55.000 0.00 0.00 37.17 6.46
667 1926 0.101939 GACTTTCCTAGTACCGGCGG 59.898 60.000 27.06 27.06 37.17 6.13
668 1927 1.227176 CTTTCCTAGTACCGGCGGC 60.227 63.158 28.71 11.18 0.00 6.53
669 1928 1.673808 CTTTCCTAGTACCGGCGGCT 61.674 60.000 28.71 18.73 0.00 5.52
670 1929 1.669999 TTTCCTAGTACCGGCGGCTC 61.670 60.000 28.71 19.20 0.00 4.70
671 1930 2.831742 CCTAGTACCGGCGGCTCA 60.832 66.667 28.71 8.88 0.00 4.26
672 1931 2.412112 CTAGTACCGGCGGCTCAC 59.588 66.667 28.71 21.07 0.00 3.51
673 1932 2.044650 TAGTACCGGCGGCTCACT 60.045 61.111 28.71 26.61 0.00 3.41
674 1933 2.061182 CTAGTACCGGCGGCTCACTC 62.061 65.000 28.71 10.02 0.00 3.51
675 1934 2.825075 TAGTACCGGCGGCTCACTCA 62.825 60.000 28.71 12.19 0.00 3.41
676 1935 2.992689 TACCGGCGGCTCACTCAA 60.993 61.111 28.71 0.00 0.00 3.02
677 1936 3.291101 TACCGGCGGCTCACTCAAC 62.291 63.158 28.71 0.00 0.00 3.18
678 1937 4.680237 CCGGCGGCTCACTCAACA 62.680 66.667 15.42 0.00 0.00 3.33
679 1938 3.114616 CGGCGGCTCACTCAACAG 61.115 66.667 7.61 0.00 0.00 3.16
680 1939 2.031163 GGCGGCTCACTCAACAGT 59.969 61.111 0.00 0.00 0.00 3.55
681 1940 1.598130 GGCGGCTCACTCAACAGTT 60.598 57.895 0.00 0.00 0.00 3.16
682 1941 1.571460 GCGGCTCACTCAACAGTTG 59.429 57.895 6.99 6.99 0.00 3.16
683 1942 1.845809 GCGGCTCACTCAACAGTTGG 61.846 60.000 13.52 6.81 0.00 3.77
684 1943 1.845809 CGGCTCACTCAACAGTTGGC 61.846 60.000 13.52 8.05 0.00 4.52
685 1944 0.819259 GGCTCACTCAACAGTTGGCA 60.819 55.000 13.52 0.00 32.14 4.92
686 1945 1.024271 GCTCACTCAACAGTTGGCAA 58.976 50.000 13.52 0.00 31.33 4.52
687 1946 1.610522 GCTCACTCAACAGTTGGCAAT 59.389 47.619 13.52 0.00 31.33 3.56
688 1947 2.035066 GCTCACTCAACAGTTGGCAATT 59.965 45.455 13.52 0.00 31.33 2.32
689 1948 3.635331 CTCACTCAACAGTTGGCAATTG 58.365 45.455 19.66 19.66 0.00 2.32
690 1949 2.129607 CACTCAACAGTTGGCAATTGC 58.870 47.619 22.47 22.47 41.14 3.56
691 1950 1.755959 ACTCAACAGTTGGCAATTGCA 59.244 42.857 30.32 14.71 44.36 4.08
692 1951 2.129607 CTCAACAGTTGGCAATTGCAC 58.870 47.619 30.32 20.79 44.36 4.57
693 1952 0.854062 CAACAGTTGGCAATTGCACG 59.146 50.000 30.32 18.06 44.36 5.34
700 1959 4.266029 CAGTTGGCAATTGCACGATTATTC 59.734 41.667 30.32 11.20 44.36 1.75
707 1966 8.338068 GGCAATTGCACGATTATTCGGTTTTC 62.338 42.308 30.32 3.97 42.99 2.29
736 1995 6.140110 ACCAATCGTGCGTATTAATATTTGC 58.860 36.000 0.00 4.68 0.00 3.68
739 1998 6.779115 ATCGTGCGTATTAATATTTGCTCA 57.221 33.333 14.46 6.50 0.00 4.26
841 2107 5.472148 CAATGCATGTACAAAATCACTGGT 58.528 37.500 0.00 0.00 0.00 4.00
846 2112 5.106197 GCATGTACAAAATCACTGGTCATGA 60.106 40.000 0.00 0.00 34.21 3.07
848 2114 6.558771 TGTACAAAATCACTGGTCATGAAG 57.441 37.500 0.00 0.00 0.00 3.02
852 2118 6.484288 ACAAAATCACTGGTCATGAAGGATA 58.516 36.000 0.00 0.00 0.00 2.59
904 2170 1.153349 GGCCGCCGAAAAGATCTCT 60.153 57.895 0.00 0.00 0.00 3.10
906 2172 0.375106 GCCGCCGAAAAGATCTCTTG 59.625 55.000 0.00 0.00 36.12 3.02
908 2174 2.555199 CCGCCGAAAAGATCTCTTGAT 58.445 47.619 0.00 0.00 36.12 2.57
933 2200 2.561478 TTTTCCTTTCACCTCTCCGG 57.439 50.000 0.00 0.00 39.35 5.14
1287 2558 1.949631 GGCGCTAATCGAAGGTCGG 60.950 63.158 7.64 0.00 40.88 4.79
1456 2957 5.170748 CAATGTAACCATCCTTGCTTTTCC 58.829 41.667 0.00 0.00 0.00 3.13
1472 2980 4.984785 GCTTTTCCCAAATTCAGTCTGAAC 59.015 41.667 17.49 0.00 39.45 3.18
1493 3001 1.076332 GCACTGTGCCTTACTTACCG 58.924 55.000 21.78 0.00 37.42 4.02
1494 3002 1.607251 GCACTGTGCCTTACTTACCGT 60.607 52.381 21.78 0.00 37.42 4.83
1495 3003 2.762745 CACTGTGCCTTACTTACCGTT 58.237 47.619 0.00 0.00 0.00 4.44
1496 3004 3.861886 GCACTGTGCCTTACTTACCGTTA 60.862 47.826 21.78 0.00 37.42 3.18
1497 3005 3.676646 CACTGTGCCTTACTTACCGTTAC 59.323 47.826 0.00 0.00 0.00 2.50
1498 3006 3.256558 CTGTGCCTTACTTACCGTTACC 58.743 50.000 0.00 0.00 0.00 2.85
1503 3011 4.955450 TGCCTTACTTACCGTTACCAGATA 59.045 41.667 0.00 0.00 0.00 1.98
1550 3058 8.696374 TGATTTCTTATGTCTGTTAGACCTAGG 58.304 37.037 7.41 7.41 44.44 3.02
1569 3077 4.963361 AGGATCCTAGCTAGATGGATGA 57.037 45.455 22.70 9.78 40.33 2.92
1575 3083 5.150715 TCCTAGCTAGATGGATGAACATGT 58.849 41.667 22.70 0.00 0.00 3.21
1576 3084 5.011431 TCCTAGCTAGATGGATGAACATGTG 59.989 44.000 22.70 0.00 0.00 3.21
2239 3751 1.547372 CCTTTGCCTGGAATGAAGGTG 59.453 52.381 0.00 0.00 37.13 4.00
2251 3763 0.468226 TGAAGGTGACCGCTGTTTCT 59.532 50.000 0.00 0.00 0.00 2.52
2301 3813 5.188751 TCAAAAGTTGGGTGGAGTTTCAAAT 59.811 36.000 0.00 0.00 0.00 2.32
2661 4198 7.254227 TGCAAGTTTCTGTTTACTAATCGTT 57.746 32.000 0.00 0.00 0.00 3.85
2744 4281 5.250313 TGGGCCAAATCAACCAAATATTCTT 59.750 36.000 2.13 0.00 0.00 2.52
2853 4393 8.922058 ATGCTCAAAATGACAGATTGTTATTC 57.078 30.769 0.55 0.00 35.84 1.75
2964 4504 6.922247 CTCGACTAGAGGTAACAAGATACA 57.078 41.667 0.00 0.00 43.20 2.29
2983 4523 8.794335 AGATACACAAAAAGTAGATCCTTTCC 57.206 34.615 0.00 0.00 33.62 3.13
3008 4548 8.721478 CCCAGATATAAGTGTGTACAAATATGC 58.279 37.037 0.00 0.00 0.00 3.14
3020 4560 7.095017 TGTGTACAAATATGCGAATGTTCTGAA 60.095 33.333 0.00 0.00 0.00 3.02
3229 4769 6.543430 AATATTTTTCTTATGCCAGGCACA 57.457 33.333 19.10 0.12 43.04 4.57
3283 4823 7.728847 AATTTAAAAACTTGCTGATCCAACC 57.271 32.000 0.00 0.00 0.00 3.77
3284 4824 5.860941 TTAAAAACTTGCTGATCCAACCA 57.139 34.783 0.00 0.00 0.00 3.67
3526 5113 5.873712 ACAGTTTCTCTAGCTTGATGTCATG 59.126 40.000 0.00 0.00 0.00 3.07
3542 5129 4.260985 TGTCATGTTCGAATGGCAGTATT 58.739 39.130 0.00 0.00 37.25 1.89
3614 5201 4.130118 GTGATGTTATCTAGGCACTTGGG 58.870 47.826 0.00 0.00 41.75 4.12
3615 5202 3.780294 TGATGTTATCTAGGCACTTGGGT 59.220 43.478 0.00 0.00 41.75 4.51
3619 5206 5.680619 TGTTATCTAGGCACTTGGGTAATG 58.319 41.667 0.00 0.00 41.75 1.90
3638 5225 7.335924 GGGTAATGTGATGCTAAAACTTCTGTA 59.664 37.037 0.00 0.00 0.00 2.74
3680 5267 7.703298 CATTCCTAATGCACATACAATTTGG 57.297 36.000 0.78 0.00 31.20 3.28
3785 5372 5.378230 TTTCCTCATGTCATAAGCCAGAT 57.622 39.130 0.00 0.00 0.00 2.90
3793 5380 8.193953 TCATGTCATAAGCCAGATAATAGTCA 57.806 34.615 0.00 0.00 0.00 3.41
3949 5542 0.962356 ATGCTGGGGTCAAGCTTTCG 60.962 55.000 0.00 0.00 0.00 3.46
3982 5575 0.541863 TTCCTAGCTGGCAGGTAAGC 59.458 55.000 24.90 7.71 39.82 3.09
4005 5598 5.627499 TGCAAGCCTACAATTTCAACTAG 57.373 39.130 0.00 0.00 0.00 2.57
4009 5602 5.514500 AGCCTACAATTTCAACTAGGGAA 57.486 39.130 0.00 0.00 0.00 3.97
4046 5640 7.953158 TTATCAGAAATTATCTCTCGCTTGG 57.047 36.000 0.00 0.00 35.73 3.61
4047 5641 4.122776 TCAGAAATTATCTCTCGCTTGGC 58.877 43.478 0.00 0.00 35.73 4.52
4054 5648 1.896220 TCTCTCGCTTGGCAAATTGT 58.104 45.000 0.00 0.00 0.00 2.71
4057 5651 1.952990 TCTCGCTTGGCAAATTGTCAA 59.047 42.857 12.70 12.70 40.00 3.18
4059 5653 3.005684 TCTCGCTTGGCAAATTGTCAATT 59.994 39.130 13.71 4.91 41.56 2.32
4061 5655 4.125703 TCGCTTGGCAAATTGTCAATTTT 58.874 34.783 18.84 4.44 41.56 1.82
4066 5660 8.389603 CGCTTGGCAAATTGTCAATTTTTATAT 58.610 29.630 18.84 0.00 41.56 0.86
4088 5683 6.705863 ATAAAAGGAGACAATCTTGGATGC 57.294 37.500 0.00 0.00 0.00 3.91
4092 5687 4.670765 AGGAGACAATCTTGGATGCTTTT 58.329 39.130 0.00 0.00 0.00 2.27
4100 5695 4.247267 TCTTGGATGCTTTTCTTGCTTG 57.753 40.909 0.00 0.00 0.00 4.01
4228 5823 4.927425 AGCAATGTTTGATCTGAAATGTGC 59.073 37.500 0.00 0.00 0.00 4.57
4251 5846 7.793927 GCTCTTAGCATAGAAAACCAACTAT 57.206 36.000 0.00 0.00 41.89 2.12
4252 5847 8.214721 GCTCTTAGCATAGAAAACCAACTATT 57.785 34.615 0.00 0.00 41.89 1.73
4253 5848 9.326413 GCTCTTAGCATAGAAAACCAACTATTA 57.674 33.333 0.00 0.00 41.89 0.98
4309 5904 6.665680 GGGAGATACTAGATCATAGCTTTGGA 59.334 42.308 4.23 0.00 0.00 3.53
4321 5916 7.994425 TCATAGCTTTGGAAGTAACATTCAA 57.006 32.000 4.23 0.00 0.00 2.69
4336 5931 5.231702 ACATTCAATTTTGCACCATTCCT 57.768 34.783 0.00 0.00 0.00 3.36
4338 5933 4.952071 TTCAATTTTGCACCATTCCTGA 57.048 36.364 0.00 0.00 0.00 3.86
4353 5948 6.127026 ACCATTCCTGACTTATCTACTTGACC 60.127 42.308 0.00 0.00 0.00 4.02
4356 5951 8.642432 CATTCCTGACTTATCTACTTGACCATA 58.358 37.037 0.00 0.00 0.00 2.74
4358 5953 8.783660 TCCTGACTTATCTACTTGACCATAAT 57.216 34.615 0.00 0.00 0.00 1.28
4359 5954 9.877222 TCCTGACTTATCTACTTGACCATAATA 57.123 33.333 0.00 0.00 0.00 0.98
4387 5982 8.309163 TGAGCATCACATTTTTGGTATTTTTC 57.691 30.769 0.00 0.00 42.56 2.29
4606 6201 1.702957 TCTTGGTGGTCTTGGTAAGGG 59.297 52.381 0.00 0.00 0.00 3.95
4615 6217 6.298361 GTGGTCTTGGTAAGGGTACTAAAAA 58.702 40.000 0.00 0.00 31.10 1.94
4629 6231 8.227507 AGGGTACTAAAAATATGCATCATCCTT 58.772 33.333 0.19 0.00 0.00 3.36
4646 6248 9.166173 CATCATCCTTGTTCTAAATGTACTGAA 57.834 33.333 0.00 0.00 0.00 3.02
4681 6283 4.880886 AAAAACAGCATGCTTTTGAACC 57.119 36.364 19.98 0.00 42.21 3.62
4690 6292 5.365403 CATGCTTTTGAACCATGCAAATT 57.635 34.783 0.00 0.00 37.20 1.82
4691 6293 5.764131 CATGCTTTTGAACCATGCAAATTT 58.236 33.333 0.00 0.00 37.20 1.82
4779 6385 4.567747 GGAACACAACTATCCATCAACCCT 60.568 45.833 0.00 0.00 33.30 4.34
4815 6421 0.842635 GGGCTGGTCTCCTGATCAAT 59.157 55.000 0.00 0.00 32.23 2.57
4836 6442 2.514592 ATCAACAGCATCCCCGCG 60.515 61.111 0.00 0.00 36.85 6.46
4900 6506 4.026356 AGAAAGGTAAAGATGCTGCTGT 57.974 40.909 0.00 0.00 0.00 4.40
4902 6508 4.217118 AGAAAGGTAAAGATGCTGCTGTTG 59.783 41.667 0.00 0.00 0.00 3.33
4913 6519 6.514947 AGATGCTGCTGTTGAAACAATAAAA 58.485 32.000 0.00 0.00 38.66 1.52
4914 6520 5.964887 TGCTGCTGTTGAAACAATAAAAC 57.035 34.783 0.00 0.00 38.66 2.43
4915 6521 5.414360 TGCTGCTGTTGAAACAATAAAACA 58.586 33.333 0.00 0.00 38.66 2.83
4917 6523 5.050837 GCTGCTGTTGAAACAATAAAACAGG 60.051 40.000 14.27 2.57 46.14 4.00
4918 6524 6.214191 TGCTGTTGAAACAATAAAACAGGA 57.786 33.333 14.27 9.83 46.14 3.86
4919 6525 6.815089 TGCTGTTGAAACAATAAAACAGGAT 58.185 32.000 14.27 0.00 46.14 3.24
4920 6526 7.271511 TGCTGTTGAAACAATAAAACAGGATT 58.728 30.769 14.27 0.00 46.14 3.01
4921 6527 7.224362 TGCTGTTGAAACAATAAAACAGGATTG 59.776 33.333 14.27 0.00 46.14 2.67
4922 6528 7.307337 GCTGTTGAAACAATAAAACAGGATTGG 60.307 37.037 14.27 0.00 46.14 3.16
4999 6605 1.293062 ATGCACCCTCTGATGAACCT 58.707 50.000 0.00 0.00 0.00 3.50
5000 6606 0.325933 TGCACCCTCTGATGAACCTG 59.674 55.000 0.00 0.00 0.00 4.00
5007 6613 2.746362 CCTCTGATGAACCTGAACTTGC 59.254 50.000 0.00 0.00 0.00 4.01
5009 6615 4.008330 CTCTGATGAACCTGAACTTGCAT 58.992 43.478 0.00 0.00 0.00 3.96
5016 6622 2.472816 ACCTGAACTTGCATTTTTGCG 58.527 42.857 0.00 0.00 37.69 4.85
5035 6641 0.759346 GACAGGTATCATCCCGGCTT 59.241 55.000 0.00 0.00 0.00 4.35
5053 6659 4.465512 GGCAGCGTCACCATTGCG 62.466 66.667 0.00 0.00 37.43 4.85
5104 6710 3.625099 GCCTTCTACTGGGCGGTA 58.375 61.111 0.00 0.00 38.91 4.02
5353 6961 1.097232 TGCCATCTTTGCGATTCCTG 58.903 50.000 0.00 0.00 0.00 3.86
5505 7115 0.107703 CCAGTTCATTGCTCCGGCTA 60.108 55.000 0.00 0.00 39.59 3.93
5565 7175 7.494952 TCATGACAGATTTTTGCAACATTTCAA 59.505 29.630 0.00 0.00 0.00 2.69
5609 7219 6.375945 TGACATTATGGGATTCAACATTCG 57.624 37.500 0.00 0.00 0.00 3.34
5611 7221 5.200483 ACATTATGGGATTCAACATTCGGT 58.800 37.500 0.00 0.00 0.00 4.69
5699 7309 7.810766 ATTTACATTGCGATACAACAAAAGG 57.189 32.000 0.00 0.00 42.27 3.11
5832 7452 2.029649 GCAGCCCACATAGCATAAATGG 60.030 50.000 0.00 0.00 31.35 3.16
5937 7557 5.703978 TTGTGGTCGTGAAAATTCATCAT 57.296 34.783 0.00 0.00 39.73 2.45
5938 7558 5.295431 TGTGGTCGTGAAAATTCATCATC 57.705 39.130 0.00 0.00 39.73 2.92
6087 7707 4.824166 GCATTGCTGCTGGTCGCG 62.824 66.667 0.00 0.00 45.32 5.87
6218 7838 3.264897 GCGCCGTATGTCCTGCAG 61.265 66.667 6.78 6.78 0.00 4.41
6220 7840 1.153647 CGCCGTATGTCCTGCAGAA 60.154 57.895 17.39 0.00 0.00 3.02
6221 7841 1.421410 CGCCGTATGTCCTGCAGAAC 61.421 60.000 17.39 5.41 0.00 3.01
6228 7848 4.853196 CGTATGTCCTGCAGAACAAAATTG 59.147 41.667 10.74 0.00 0.00 2.32
6232 7852 2.429971 TCCTGCAGAACAAAATTGCACA 59.570 40.909 17.39 0.00 42.41 4.57
6253 7873 9.941325 TGCACATCAGATTTAATTTAACCAAAT 57.059 25.926 0.00 0.00 35.84 2.32
6269 7889 4.070630 CCAAATGGAGAAGTTTTTGGCA 57.929 40.909 3.65 0.00 41.00 4.92
6270 7890 4.644498 CCAAATGGAGAAGTTTTTGGCAT 58.356 39.130 3.65 0.00 41.00 4.40
6271 7891 5.065235 CCAAATGGAGAAGTTTTTGGCATT 58.935 37.500 3.65 0.00 41.00 3.56
6272 7892 5.179929 CCAAATGGAGAAGTTTTTGGCATTC 59.820 40.000 3.65 0.00 41.00 2.67
6273 7893 3.641437 TGGAGAAGTTTTTGGCATTCG 57.359 42.857 0.00 0.00 0.00 3.34
6274 7894 2.288152 TGGAGAAGTTTTTGGCATTCGC 60.288 45.455 0.00 0.00 37.44 4.70
6275 7895 2.029918 GGAGAAGTTTTTGGCATTCGCT 60.030 45.455 0.00 0.00 38.60 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.308318 TCATGAAATTTAAACATGATGCATGAG 57.692 29.630 2.46 0.00 43.81 2.90
1 2 9.654663 TTCATGAAATTTAAACATGATGCATGA 57.345 25.926 17.13 12.31 45.88 3.07
4 5 9.491675 AGTTTCATGAAATTTAAACATGATGCA 57.508 25.926 23.05 0.00 45.88 3.96
20 21 6.043012 ACAATCCCCATTTCAAGTTTCATGAA 59.957 34.615 3.38 3.38 35.11 2.57
21 22 5.543405 ACAATCCCCATTTCAAGTTTCATGA 59.457 36.000 0.00 0.00 0.00 3.07
22 23 5.797051 ACAATCCCCATTTCAAGTTTCATG 58.203 37.500 0.00 0.00 0.00 3.07
23 24 5.336690 CGACAATCCCCATTTCAAGTTTCAT 60.337 40.000 0.00 0.00 0.00 2.57
24 25 4.022416 CGACAATCCCCATTTCAAGTTTCA 60.022 41.667 0.00 0.00 0.00 2.69
25 26 4.217550 TCGACAATCCCCATTTCAAGTTTC 59.782 41.667 0.00 0.00 0.00 2.78
26 27 4.148838 TCGACAATCCCCATTTCAAGTTT 58.851 39.130 0.00 0.00 0.00 2.66
27 28 3.761897 TCGACAATCCCCATTTCAAGTT 58.238 40.909 0.00 0.00 0.00 2.66
28 29 3.433306 TCGACAATCCCCATTTCAAGT 57.567 42.857 0.00 0.00 0.00 3.16
29 30 4.485163 GTTTCGACAATCCCCATTTCAAG 58.515 43.478 0.00 0.00 0.00 3.02
30 31 3.257127 GGTTTCGACAATCCCCATTTCAA 59.743 43.478 0.00 0.00 0.00 2.69
31 32 2.823154 GGTTTCGACAATCCCCATTTCA 59.177 45.455 0.00 0.00 0.00 2.69
32 33 2.165641 GGGTTTCGACAATCCCCATTTC 59.834 50.000 0.00 0.00 35.97 2.17
33 34 2.176045 GGGTTTCGACAATCCCCATTT 58.824 47.619 0.00 0.00 35.97 2.32
34 35 1.847328 GGGTTTCGACAATCCCCATT 58.153 50.000 0.00 0.00 35.97 3.16
35 36 3.588742 GGGTTTCGACAATCCCCAT 57.411 52.632 0.00 0.00 35.97 4.00
38 39 1.313091 GCTGGGGTTTCGACAATCCC 61.313 60.000 17.11 17.11 39.94 3.85
39 40 0.608035 TGCTGGGGTTTCGACAATCC 60.608 55.000 0.00 0.00 0.00 3.01
40 41 0.804989 CTGCTGGGGTTTCGACAATC 59.195 55.000 0.00 0.00 0.00 2.67
41 42 1.244019 GCTGCTGGGGTTTCGACAAT 61.244 55.000 0.00 0.00 0.00 2.71
42 43 1.896660 GCTGCTGGGGTTTCGACAA 60.897 57.895 0.00 0.00 0.00 3.18
43 44 2.281484 GCTGCTGGGGTTTCGACA 60.281 61.111 0.00 0.00 0.00 4.35
44 45 1.452145 TTTGCTGCTGGGGTTTCGAC 61.452 55.000 0.00 0.00 0.00 4.20
45 46 0.539438 ATTTGCTGCTGGGGTTTCGA 60.539 50.000 0.00 0.00 0.00 3.71
46 47 0.388907 CATTTGCTGCTGGGGTTTCG 60.389 55.000 0.00 0.00 0.00 3.46
47 48 0.037046 CCATTTGCTGCTGGGGTTTC 60.037 55.000 0.00 0.00 0.00 2.78
48 49 0.471591 TCCATTTGCTGCTGGGGTTT 60.472 50.000 6.57 0.00 33.13 3.27
49 50 0.471591 TTCCATTTGCTGCTGGGGTT 60.472 50.000 6.57 0.00 33.13 4.11
50 51 0.252375 ATTCCATTTGCTGCTGGGGT 60.252 50.000 6.57 0.00 33.13 4.95
51 52 0.906775 AATTCCATTTGCTGCTGGGG 59.093 50.000 6.57 0.99 33.13 4.96
52 53 1.551430 TGAATTCCATTTGCTGCTGGG 59.449 47.619 2.27 0.67 33.13 4.45
53 54 2.997986 GTTGAATTCCATTTGCTGCTGG 59.002 45.455 2.27 0.00 0.00 4.85
54 55 2.997986 GGTTGAATTCCATTTGCTGCTG 59.002 45.455 2.27 0.00 0.00 4.41
55 56 2.633967 TGGTTGAATTCCATTTGCTGCT 59.366 40.909 2.27 0.00 0.00 4.24
56 57 2.997986 CTGGTTGAATTCCATTTGCTGC 59.002 45.455 2.27 0.00 34.26 5.25
57 58 3.007182 ACCTGGTTGAATTCCATTTGCTG 59.993 43.478 2.27 0.00 34.26 4.41
58 59 3.242011 ACCTGGTTGAATTCCATTTGCT 58.758 40.909 2.27 0.00 34.26 3.91
59 60 3.683365 ACCTGGTTGAATTCCATTTGC 57.317 42.857 2.27 0.00 34.26 3.68
60 61 5.212532 TGAACCTGGTTGAATTCCATTTG 57.787 39.130 18.42 0.00 34.26 2.32
61 62 5.885449 TTGAACCTGGTTGAATTCCATTT 57.115 34.783 18.42 0.00 34.26 2.32
62 63 5.366477 AGTTTGAACCTGGTTGAATTCCATT 59.634 36.000 18.42 0.00 34.26 3.16
63 64 4.901250 AGTTTGAACCTGGTTGAATTCCAT 59.099 37.500 18.42 0.00 34.26 3.41
64 65 4.285863 AGTTTGAACCTGGTTGAATTCCA 58.714 39.130 18.42 4.46 0.00 3.53
65 66 4.937201 AGTTTGAACCTGGTTGAATTCC 57.063 40.909 18.42 6.19 0.00 3.01
66 67 8.887036 ATTTAAGTTTGAACCTGGTTGAATTC 57.113 30.769 18.42 10.94 0.00 2.17
67 68 8.704668 AGATTTAAGTTTGAACCTGGTTGAATT 58.295 29.630 18.42 9.60 0.00 2.17
68 69 8.250143 AGATTTAAGTTTGAACCTGGTTGAAT 57.750 30.769 18.42 2.63 0.00 2.57
69 70 7.654022 AGATTTAAGTTTGAACCTGGTTGAA 57.346 32.000 18.42 12.63 0.00 2.69
70 71 7.654022 AAGATTTAAGTTTGAACCTGGTTGA 57.346 32.000 18.42 5.51 0.00 3.18
71 72 8.716646 AAAAGATTTAAGTTTGAACCTGGTTG 57.283 30.769 18.42 0.00 0.00 3.77
72 73 8.536175 TGAAAAGATTTAAGTTTGAACCTGGTT 58.464 29.630 12.82 12.82 0.00 3.67
73 74 8.073467 TGAAAAGATTTAAGTTTGAACCTGGT 57.927 30.769 0.00 0.00 0.00 4.00
74 75 8.940768 TTGAAAAGATTTAAGTTTGAACCTGG 57.059 30.769 0.00 0.00 0.00 4.45
80 81 9.927668 GGGATCATTGAAAAGATTTAAGTTTGA 57.072 29.630 0.00 0.00 0.00 2.69
81 82 9.709495 TGGGATCATTGAAAAGATTTAAGTTTG 57.291 29.630 0.00 0.00 0.00 2.93
84 85 9.710900 GTTTGGGATCATTGAAAAGATTTAAGT 57.289 29.630 0.00 0.00 0.00 2.24
85 86 9.933723 AGTTTGGGATCATTGAAAAGATTTAAG 57.066 29.630 0.00 0.00 0.00 1.85
86 87 9.709495 CAGTTTGGGATCATTGAAAAGATTTAA 57.291 29.630 0.00 0.00 0.00 1.52
87 88 7.818930 GCAGTTTGGGATCATTGAAAAGATTTA 59.181 33.333 0.00 0.00 0.00 1.40
88 89 6.652062 GCAGTTTGGGATCATTGAAAAGATTT 59.348 34.615 0.00 0.00 0.00 2.17
89 90 6.168389 GCAGTTTGGGATCATTGAAAAGATT 58.832 36.000 0.00 0.00 0.00 2.40
90 91 5.337813 GGCAGTTTGGGATCATTGAAAAGAT 60.338 40.000 0.00 0.00 0.00 2.40
91 92 4.021192 GGCAGTTTGGGATCATTGAAAAGA 60.021 41.667 0.00 0.00 0.00 2.52
92 93 4.020839 AGGCAGTTTGGGATCATTGAAAAG 60.021 41.667 0.00 0.00 0.00 2.27
93 94 3.903090 AGGCAGTTTGGGATCATTGAAAA 59.097 39.130 0.00 0.00 0.00 2.29
94 95 3.509442 AGGCAGTTTGGGATCATTGAAA 58.491 40.909 0.00 0.00 0.00 2.69
95 96 3.173953 AGGCAGTTTGGGATCATTGAA 57.826 42.857 0.00 0.00 0.00 2.69
96 97 2.905415 AGGCAGTTTGGGATCATTGA 57.095 45.000 0.00 0.00 0.00 2.57
97 98 3.592059 CAAAGGCAGTTTGGGATCATTG 58.408 45.455 0.00 0.00 41.78 2.82
98 99 3.967332 CAAAGGCAGTTTGGGATCATT 57.033 42.857 0.00 0.00 41.78 2.57
106 107 4.270808 GTGAACATTTCCAAAGGCAGTTTG 59.729 41.667 4.22 4.22 44.64 2.93
107 108 4.081198 TGTGAACATTTCCAAAGGCAGTTT 60.081 37.500 0.00 0.00 0.00 2.66
108 109 3.450457 TGTGAACATTTCCAAAGGCAGTT 59.550 39.130 0.00 0.00 0.00 3.16
109 110 3.030291 TGTGAACATTTCCAAAGGCAGT 58.970 40.909 0.00 0.00 0.00 4.40
110 111 3.383761 GTGTGAACATTTCCAAAGGCAG 58.616 45.455 0.00 0.00 0.00 4.85
111 112 2.102252 GGTGTGAACATTTCCAAAGGCA 59.898 45.455 0.00 0.00 0.00 4.75
112 113 2.754472 GGTGTGAACATTTCCAAAGGC 58.246 47.619 0.00 0.00 0.00 4.35
113 114 2.360801 ACGGTGTGAACATTTCCAAAGG 59.639 45.455 0.00 0.00 0.00 3.11
114 115 3.708563 ACGGTGTGAACATTTCCAAAG 57.291 42.857 0.00 0.00 0.00 2.77
115 116 4.216687 GGATACGGTGTGAACATTTCCAAA 59.783 41.667 0.00 0.00 0.00 3.28
116 117 3.754323 GGATACGGTGTGAACATTTCCAA 59.246 43.478 0.00 0.00 0.00 3.53
117 118 3.008594 AGGATACGGTGTGAACATTTCCA 59.991 43.478 0.00 0.00 46.39 3.53
118 119 3.606687 AGGATACGGTGTGAACATTTCC 58.393 45.455 0.00 0.00 46.39 3.13
119 120 3.621715 GGAGGATACGGTGTGAACATTTC 59.378 47.826 0.00 0.00 46.39 2.17
120 121 3.263425 AGGAGGATACGGTGTGAACATTT 59.737 43.478 0.00 0.00 46.39 2.32
121 122 2.838202 AGGAGGATACGGTGTGAACATT 59.162 45.455 0.00 0.00 46.39 2.71
122 123 2.431057 GAGGAGGATACGGTGTGAACAT 59.569 50.000 0.00 0.00 46.39 2.71
123 124 1.822990 GAGGAGGATACGGTGTGAACA 59.177 52.381 0.00 0.00 46.39 3.18
124 125 2.100989 AGAGGAGGATACGGTGTGAAC 58.899 52.381 0.00 0.00 46.39 3.18
125 126 2.496070 CAAGAGGAGGATACGGTGTGAA 59.504 50.000 0.00 0.00 46.39 3.18
126 127 2.100197 CAAGAGGAGGATACGGTGTGA 58.900 52.381 0.00 0.00 46.39 3.58
127 128 2.100197 TCAAGAGGAGGATACGGTGTG 58.900 52.381 0.00 0.00 46.39 3.82
128 129 2.526888 TCAAGAGGAGGATACGGTGT 57.473 50.000 0.00 0.00 46.39 4.16
164 165 2.703007 GGATTACAGGACCAGAGCTCAT 59.297 50.000 17.77 0.00 0.00 2.90
206 207 1.101331 CTCCTCAAGGCATCAAAGGC 58.899 55.000 0.00 0.00 34.44 4.35
301 302 2.401583 TTGTATGACAAGGATGCGCT 57.598 45.000 9.73 0.00 32.34 5.92
303 304 4.094739 TGACAATTGTATGACAAGGATGCG 59.905 41.667 11.95 0.00 41.94 4.73
304 305 5.124457 AGTGACAATTGTATGACAAGGATGC 59.876 40.000 11.95 0.00 41.94 3.91
348 350 4.285775 TCCTTAATATCATGATGACCGGCA 59.714 41.667 18.72 0.00 0.00 5.69
355 357 6.148315 ACACGCACATCCTTAATATCATGATG 59.852 38.462 18.72 1.99 38.94 3.07
359 361 4.686091 CGACACGCACATCCTTAATATCAT 59.314 41.667 0.00 0.00 0.00 2.45
425 427 1.978580 CACTTGTGAGGACTAGGGGTT 59.021 52.381 0.00 0.00 29.99 4.11
448 450 6.039493 TGCATAAAACCGTCCTTAAAACAGAA 59.961 34.615 0.00 0.00 0.00 3.02
491 493 4.278170 TGTTAGGATGAGCAACCAAACAAG 59.722 41.667 0.00 0.00 0.00 3.16
525 1784 0.109153 ACAGTCTCAACATGGCTGCA 59.891 50.000 0.50 0.00 0.00 4.41
526 1785 0.520404 CACAGTCTCAACATGGCTGC 59.480 55.000 0.00 0.00 0.00 5.25
527 1786 1.534163 CACACAGTCTCAACATGGCTG 59.466 52.381 0.00 0.00 0.00 4.85
533 1792 3.132111 TCTGTAAGCACACAGTCTCAACA 59.868 43.478 15.01 0.00 45.11 3.33
534 1793 3.717707 TCTGTAAGCACACAGTCTCAAC 58.282 45.455 15.01 0.00 45.11 3.18
584 1843 0.994995 CCGCTCGTTCTCATCACAAG 59.005 55.000 0.00 0.00 0.00 3.16
586 1845 1.135489 GTACCGCTCGTTCTCATCACA 60.135 52.381 0.00 0.00 0.00 3.58
587 1846 1.546834 GTACCGCTCGTTCTCATCAC 58.453 55.000 0.00 0.00 0.00 3.06
588 1847 0.098200 CGTACCGCTCGTTCTCATCA 59.902 55.000 0.00 0.00 0.00 3.07
612 1871 1.147473 GCCAACAATTTTGCGGGAAG 58.853 50.000 5.33 0.00 0.00 3.46
649 1908 1.953231 GCCGCCGGTACTAGGAAAGT 61.953 60.000 4.45 0.00 42.62 2.66
651 1910 1.669999 GAGCCGCCGGTACTAGGAAA 61.670 60.000 4.45 0.00 0.00 3.13
652 1911 2.043652 AGCCGCCGGTACTAGGAA 60.044 61.111 4.45 0.00 0.00 3.36
655 1914 2.061182 GAGTGAGCCGCCGGTACTAG 62.061 65.000 4.45 0.00 0.00 2.57
656 1915 2.044650 AGTGAGCCGCCGGTACTA 60.045 61.111 4.45 0.00 0.00 1.82
658 1917 3.291101 TTGAGTGAGCCGCCGGTAC 62.291 63.158 4.45 1.84 0.00 3.34
659 1918 2.992689 TTGAGTGAGCCGCCGGTA 60.993 61.111 4.45 0.00 0.00 4.02
660 1919 4.681978 GTTGAGTGAGCCGCCGGT 62.682 66.667 4.45 0.00 0.00 5.28
661 1920 4.680237 TGTTGAGTGAGCCGCCGG 62.680 66.667 0.00 0.00 0.00 6.13
662 1921 3.114616 CTGTTGAGTGAGCCGCCG 61.115 66.667 0.00 0.00 0.00 6.46
663 1922 1.598130 AACTGTTGAGTGAGCCGCC 60.598 57.895 0.00 0.00 30.61 6.13
664 1923 1.571460 CAACTGTTGAGTGAGCCGC 59.429 57.895 15.26 0.00 30.61 6.53
665 1924 1.845809 GCCAACTGTTGAGTGAGCCG 61.846 60.000 21.49 3.70 30.61 5.52
666 1925 0.819259 TGCCAACTGTTGAGTGAGCC 60.819 55.000 21.49 2.61 32.44 4.70
667 1926 1.024271 TTGCCAACTGTTGAGTGAGC 58.976 50.000 21.49 15.33 33.52 4.26
668 1927 3.635331 CAATTGCCAACTGTTGAGTGAG 58.365 45.455 21.49 5.80 30.61 3.51
669 1928 2.223782 GCAATTGCCAACTGTTGAGTGA 60.224 45.455 20.06 5.38 30.77 3.41
670 1929 2.129607 GCAATTGCCAACTGTTGAGTG 58.870 47.619 20.06 12.04 30.77 3.51
671 1930 1.755959 TGCAATTGCCAACTGTTGAGT 59.244 42.857 26.94 0.00 41.18 3.41
672 1931 2.129607 GTGCAATTGCCAACTGTTGAG 58.870 47.619 26.94 12.38 41.18 3.02
673 1932 1.535649 CGTGCAATTGCCAACTGTTGA 60.536 47.619 26.94 2.43 41.18 3.18
674 1933 0.854062 CGTGCAATTGCCAACTGTTG 59.146 50.000 26.94 13.50 41.18 3.33
675 1934 0.743688 TCGTGCAATTGCCAACTGTT 59.256 45.000 26.94 0.00 41.18 3.16
676 1935 0.961019 ATCGTGCAATTGCCAACTGT 59.039 45.000 26.94 8.23 41.18 3.55
677 1936 2.068837 AATCGTGCAATTGCCAACTG 57.931 45.000 26.94 14.81 41.18 3.16
678 1937 4.423732 GAATAATCGTGCAATTGCCAACT 58.576 39.130 26.94 10.61 41.18 3.16
679 1938 3.240401 CGAATAATCGTGCAATTGCCAAC 59.760 43.478 26.94 18.01 44.06 3.77
680 1939 3.433709 CGAATAATCGTGCAATTGCCAA 58.566 40.909 26.94 12.90 44.06 4.52
681 1940 3.063670 CGAATAATCGTGCAATTGCCA 57.936 42.857 26.94 12.70 44.06 4.92
707 1966 9.872757 AATATTAATACGCACGATTGGTTTTAG 57.127 29.630 0.00 0.00 0.00 1.85
841 2107 3.371917 CCCAAAGCCAGTATCCTTCATGA 60.372 47.826 0.00 0.00 0.00 3.07
846 2112 4.026052 CAAATCCCAAAGCCAGTATCCTT 58.974 43.478 0.00 0.00 0.00 3.36
848 2114 3.131046 CACAAATCCCAAAGCCAGTATCC 59.869 47.826 0.00 0.00 0.00 2.59
852 2118 0.681175 GCACAAATCCCAAAGCCAGT 59.319 50.000 0.00 0.00 0.00 4.00
855 2121 0.037046 CCAGCACAAATCCCAAAGCC 60.037 55.000 0.00 0.00 0.00 4.35
885 2151 1.449601 GAGATCTTTTCGGCGGCCA 60.450 57.895 20.71 3.24 0.00 5.36
886 2152 0.744771 AAGAGATCTTTTCGGCGGCC 60.745 55.000 9.54 9.54 30.82 6.13
913 2179 2.858745 CCGGAGAGGTGAAAGGAAAAA 58.141 47.619 0.00 0.00 34.51 1.94
926 2193 0.820871 CTCCTCTTGGAACCGGAGAG 59.179 60.000 9.46 9.56 44.56 3.20
927 2194 2.977578 CTCCTCTTGGAACCGGAGA 58.022 57.895 9.46 0.00 44.56 3.71
928 2195 0.820871 CTCTCCTCTTGGAACCGGAG 59.179 60.000 9.46 0.00 42.66 4.63
929 2196 0.408309 TCTCTCCTCTTGGAACCGGA 59.592 55.000 9.46 0.00 42.66 5.14
930 2197 1.267121 TTCTCTCCTCTTGGAACCGG 58.733 55.000 0.00 0.00 42.66 5.28
931 2198 2.563179 TCTTTCTCTCCTCTTGGAACCG 59.437 50.000 0.00 0.00 42.66 4.44
932 2199 3.835395 TCTCTTTCTCTCCTCTTGGAACC 59.165 47.826 0.00 0.00 42.66 3.62
933 2200 5.675684 ATCTCTTTCTCTCCTCTTGGAAC 57.324 43.478 0.00 0.00 42.66 3.62
1360 2854 2.281345 GAGGCGATGGGGCATCAG 60.281 66.667 0.00 0.00 42.86 2.90
1416 2910 0.955428 TTGTCTGCACCAGAATCGGC 60.955 55.000 0.00 0.00 42.46 5.54
1493 3001 4.946478 AGATGCTCTGGTATCTGGTAAC 57.054 45.455 0.00 0.00 41.97 2.50
1494 3002 4.443457 GCAAGATGCTCTGGTATCTGGTAA 60.443 45.833 0.00 0.00 42.56 2.85
1495 3003 3.070159 GCAAGATGCTCTGGTATCTGGTA 59.930 47.826 0.00 0.00 42.56 3.25
1496 3004 2.158842 GCAAGATGCTCTGGTATCTGGT 60.159 50.000 0.00 0.00 42.56 4.00
1497 3005 2.158856 TGCAAGATGCTCTGGTATCTGG 60.159 50.000 3.78 0.00 45.31 3.86
1498 3006 3.132160 CTGCAAGATGCTCTGGTATCTG 58.868 50.000 3.78 0.00 45.31 2.90
1503 3011 0.399454 ACACTGCAAGATGCTCTGGT 59.601 50.000 3.78 0.00 45.31 4.00
1527 3035 8.840200 ATCCTAGGTCTAACAGACATAAGAAA 57.160 34.615 9.08 0.00 46.79 2.52
1550 3058 5.991933 TGTTCATCCATCTAGCTAGGATC 57.008 43.478 20.58 8.35 40.07 3.36
2239 3751 1.940613 ACTGAAACAGAAACAGCGGTC 59.059 47.619 5.76 0.00 35.18 4.79
2251 3763 4.887748 TGCAAACCAAGAAAACTGAAACA 58.112 34.783 0.00 0.00 0.00 2.83
2386 3923 3.387962 AGAAGGCTCATTACCCTCATCA 58.612 45.455 0.00 0.00 0.00 3.07
2684 4221 1.138247 GTCGCCACGTATCGGTTCT 59.862 57.895 8.45 0.00 0.00 3.01
2690 4227 0.179121 TGGTCATGTCGCCACGTATC 60.179 55.000 0.00 0.00 0.00 2.24
2694 4231 2.815211 CCTGGTCATGTCGCCACG 60.815 66.667 0.00 0.00 0.00 4.94
2809 4349 8.510243 TGAGCATTTGATGTCTATTTACATGT 57.490 30.769 2.69 2.69 40.17 3.21
2821 4361 6.335471 TCTGTCATTTTGAGCATTTGATGT 57.665 33.333 0.00 0.00 0.00 3.06
2853 4393 6.149474 CCCTGATGTACAAAAGTGAAGGTAAG 59.851 42.308 0.00 0.00 0.00 2.34
2856 4396 4.141251 ACCCTGATGTACAAAAGTGAAGGT 60.141 41.667 0.00 0.76 0.00 3.50
2874 4414 6.906848 TCCCTTTAAATAGTATTCCACCCTG 58.093 40.000 0.00 0.00 0.00 4.45
2964 4504 6.200878 TCTGGGAAAGGATCTACTTTTTGT 57.799 37.500 0.00 0.00 40.55 2.83
2983 4523 8.435430 CGCATATTTGTACACACTTATATCTGG 58.565 37.037 0.00 0.00 0.00 3.86
3008 4548 2.545526 AGCACACAGTTCAGAACATTCG 59.454 45.455 15.85 3.64 0.00 3.34
3020 4560 4.320456 CCGGGAGCAGCACACAGT 62.320 66.667 0.00 0.00 0.00 3.55
3221 4761 2.286872 TGCAAAATTTTGTGTGCCTGG 58.713 42.857 27.13 4.13 40.24 4.45
3254 4794 9.823647 TGGATCAGCAAGTTTTTAAATTAAACA 57.176 25.926 0.00 0.00 37.83 2.83
3260 4800 6.825610 TGGTTGGATCAGCAAGTTTTTAAAT 58.174 32.000 0.00 0.00 0.00 1.40
3264 4804 4.559300 CGATGGTTGGATCAGCAAGTTTTT 60.559 41.667 0.00 0.00 0.00 1.94
3283 4823 6.750039 ACGGCTGAAAATTTAATTTACCGATG 59.250 34.615 25.84 11.63 37.69 3.84
3284 4824 6.859017 ACGGCTGAAAATTTAATTTACCGAT 58.141 32.000 25.84 15.16 37.69 4.18
3551 5138 9.567848 GACTTCAAAGTTGTTTTATCACAAAGA 57.432 29.630 0.00 0.00 39.88 2.52
3559 5146 8.571336 CCAGATGAGACTTCAAAGTTGTTTTAT 58.429 33.333 0.00 0.00 39.88 1.40
3619 5206 7.119846 ACAGGAATACAGAAGTTTTAGCATCAC 59.880 37.037 0.00 0.00 0.00 3.06
3638 5225 6.371278 AGGAATGCTTTATCATGACAGGAAT 58.629 36.000 0.00 0.00 0.00 3.01
3751 5338 6.533730 TGACATGAGGAAATACACAGTTCTT 58.466 36.000 0.00 0.00 0.00 2.52
3772 5359 6.696411 AGCTGACTATTATCTGGCTTATGAC 58.304 40.000 0.00 0.00 0.00 3.06
3949 5542 5.531287 CCAGCTAGGAACAAAATATGGTACC 59.469 44.000 4.43 4.43 41.22 3.34
3982 5575 4.510038 AGTTGAAATTGTAGGCTTGCAG 57.490 40.909 0.00 0.00 0.00 4.41
4024 5618 4.754114 GCCAAGCGAGAGATAATTTCTGAT 59.246 41.667 0.00 0.00 33.74 2.90
4026 5620 3.873361 TGCCAAGCGAGAGATAATTTCTG 59.127 43.478 0.00 0.00 33.74 3.02
4034 5628 2.421424 GACAATTTGCCAAGCGAGAGAT 59.579 45.455 0.00 0.00 0.00 2.75
4036 5630 1.536766 TGACAATTTGCCAAGCGAGAG 59.463 47.619 0.00 0.00 0.00 3.20
4037 5631 1.603456 TGACAATTTGCCAAGCGAGA 58.397 45.000 0.00 0.00 0.00 4.04
4040 5634 4.471157 AAAATTGACAATTTGCCAAGCG 57.529 36.364 23.37 0.00 40.05 4.68
4066 5660 5.819991 AGCATCCAAGATTGTCTCCTTTTA 58.180 37.500 0.00 0.00 0.00 1.52
4070 5664 4.313020 AAAGCATCCAAGATTGTCTCCT 57.687 40.909 0.00 0.00 0.00 3.69
4072 5666 5.893897 AGAAAAGCATCCAAGATTGTCTC 57.106 39.130 0.00 0.00 25.17 3.36
4074 5668 4.624452 GCAAGAAAAGCATCCAAGATTGTC 59.376 41.667 0.00 0.00 0.00 3.18
4076 5670 4.817517 AGCAAGAAAAGCATCCAAGATTG 58.182 39.130 0.00 0.00 0.00 2.67
4088 5683 7.719778 AAAGGAAATAAGCAAGCAAGAAAAG 57.280 32.000 0.00 0.00 0.00 2.27
4200 5795 7.496591 ACATTTCAGATCAAACATTGCTTTTGT 59.503 29.630 0.00 0.00 35.75 2.83
4236 5831 7.556635 GGCCTTCAGTAATAGTTGGTTTTCTAT 59.443 37.037 0.00 0.00 0.00 1.98
4237 5832 6.882678 GGCCTTCAGTAATAGTTGGTTTTCTA 59.117 38.462 0.00 0.00 0.00 2.10
4238 5833 5.710567 GGCCTTCAGTAATAGTTGGTTTTCT 59.289 40.000 0.00 0.00 0.00 2.52
4239 5834 5.710567 AGGCCTTCAGTAATAGTTGGTTTTC 59.289 40.000 0.00 0.00 0.00 2.29
4240 5835 5.641155 AGGCCTTCAGTAATAGTTGGTTTT 58.359 37.500 0.00 0.00 0.00 2.43
4241 5836 5.256806 AGGCCTTCAGTAATAGTTGGTTT 57.743 39.130 0.00 0.00 0.00 3.27
4242 5837 4.929146 AGGCCTTCAGTAATAGTTGGTT 57.071 40.909 0.00 0.00 0.00 3.67
4243 5838 4.536489 AGAAGGCCTTCAGTAATAGTTGGT 59.464 41.667 39.84 17.19 41.84 3.67
4244 5839 5.104259 AGAAGGCCTTCAGTAATAGTTGG 57.896 43.478 39.84 0.00 41.84 3.77
4245 5840 7.113658 TCTAGAAGGCCTTCAGTAATAGTTG 57.886 40.000 39.84 21.05 41.84 3.16
4246 5841 7.735326 TTCTAGAAGGCCTTCAGTAATAGTT 57.265 36.000 39.84 22.26 41.84 2.24
4247 5842 7.735326 TTTCTAGAAGGCCTTCAGTAATAGT 57.265 36.000 39.84 22.91 41.84 2.12
4251 5846 8.871125 CCTATATTTCTAGAAGGCCTTCAGTAA 58.129 37.037 39.84 30.94 41.84 2.24
4252 5847 8.232412 TCCTATATTTCTAGAAGGCCTTCAGTA 58.768 37.037 39.84 25.98 41.84 2.74
4253 5848 7.076446 TCCTATATTTCTAGAAGGCCTTCAGT 58.924 38.462 39.84 26.25 41.84 3.41
4254 5849 7.546250 TCCTATATTTCTAGAAGGCCTTCAG 57.454 40.000 39.84 32.31 41.84 3.02
4255 5850 7.931015 TTCCTATATTTCTAGAAGGCCTTCA 57.069 36.000 39.84 26.49 41.84 3.02
4292 5887 9.553064 AATGTTACTTCCAAAGCTATGATCTAG 57.447 33.333 0.00 0.00 0.00 2.43
4293 5888 9.547753 GAATGTTACTTCCAAAGCTATGATCTA 57.452 33.333 0.00 0.00 0.00 1.98
4294 5889 8.049117 TGAATGTTACTTCCAAAGCTATGATCT 58.951 33.333 0.00 0.00 0.00 2.75
4309 5904 7.173047 GGAATGGTGCAAAATTGAATGTTACTT 59.827 33.333 0.00 0.00 0.00 2.24
4321 5916 5.954150 AGATAAGTCAGGAATGGTGCAAAAT 59.046 36.000 0.00 0.00 0.00 1.82
4360 5955 9.941325 AAAAATACCAAAAATGTGATGCTCATA 57.059 25.926 0.00 0.00 0.00 2.15
4361 5956 8.851541 AAAAATACCAAAAATGTGATGCTCAT 57.148 26.923 0.00 0.00 0.00 2.90
4362 5957 7.116090 CGAAAAATACCAAAAATGTGATGCTCA 59.884 33.333 0.00 0.00 0.00 4.26
4363 5958 7.116233 ACGAAAAATACCAAAAATGTGATGCTC 59.884 33.333 0.00 0.00 0.00 4.26
4364 5959 6.928492 ACGAAAAATACCAAAAATGTGATGCT 59.072 30.769 0.00 0.00 0.00 3.79
4365 5960 7.116061 ACGAAAAATACCAAAAATGTGATGC 57.884 32.000 0.00 0.00 0.00 3.91
4366 5961 9.619316 TCTACGAAAAATACCAAAAATGTGATG 57.381 29.630 0.00 0.00 0.00 3.07
4381 5976 8.893727 CACCAAAAGATCCTATCTACGAAAAAT 58.106 33.333 0.00 0.00 39.08 1.82
4386 5981 4.202223 GCCACCAAAAGATCCTATCTACGA 60.202 45.833 0.00 0.00 39.08 3.43
4387 5982 4.058817 GCCACCAAAAGATCCTATCTACG 58.941 47.826 0.00 0.00 39.08 3.51
4615 6217 8.701908 ACATTTAGAACAAGGATGATGCATAT 57.298 30.769 0.00 0.00 0.00 1.78
4646 6248 8.658609 GCATGCTGTTTTTGTACAATTCATAAT 58.341 29.630 11.37 3.85 0.00 1.28
4654 6256 6.104439 CAAAAGCATGCTGTTTTTGTACAA 57.896 33.333 25.28 3.59 46.44 2.41
4779 6385 0.758685 CCCAAGCCCACAAAACCAGA 60.759 55.000 0.00 0.00 0.00 3.86
4815 6421 1.380246 GGGGATGCTGTTGATGGCA 60.380 57.895 0.00 0.00 42.80 4.92
4836 6442 3.827898 CCACCGTCGAGCTCTCCC 61.828 72.222 12.85 0.00 0.00 4.30
4866 6472 0.251742 CCTTTCTTCCCCACATGGCA 60.252 55.000 0.00 0.00 0.00 4.92
4900 6506 7.441017 CCTCCAATCCTGTTTTATTGTTTCAA 58.559 34.615 0.00 0.00 32.34 2.69
4902 6508 5.869344 GCCTCCAATCCTGTTTTATTGTTTC 59.131 40.000 0.00 0.00 32.34 2.78
4913 6519 1.207791 CAGGTAGCCTCCAATCCTGT 58.792 55.000 0.00 0.00 40.25 4.00
4914 6520 1.500474 TCAGGTAGCCTCCAATCCTG 58.500 55.000 0.00 0.00 44.69 3.86
4915 6521 2.122768 CTTCAGGTAGCCTCCAATCCT 58.877 52.381 0.00 0.00 0.00 3.24
4917 6523 1.488393 AGCTTCAGGTAGCCTCCAATC 59.512 52.381 0.00 0.00 42.20 2.67
4918 6524 1.211457 CAGCTTCAGGTAGCCTCCAAT 59.789 52.381 0.00 0.00 42.20 3.16
4919 6525 0.615331 CAGCTTCAGGTAGCCTCCAA 59.385 55.000 0.00 0.00 42.20 3.53
4920 6526 0.545309 ACAGCTTCAGGTAGCCTCCA 60.545 55.000 0.00 0.00 42.20 3.86
4921 6527 0.107945 CACAGCTTCAGGTAGCCTCC 60.108 60.000 0.00 0.00 42.20 4.30
4922 6528 0.898320 TCACAGCTTCAGGTAGCCTC 59.102 55.000 0.00 0.00 42.20 4.70
4999 6605 3.114809 CTGTCGCAAAAATGCAAGTTCA 58.885 40.909 0.00 0.00 34.41 3.18
5000 6606 2.472488 CCTGTCGCAAAAATGCAAGTTC 59.528 45.455 0.00 0.00 34.41 3.01
5007 6613 4.498009 GGGATGATACCTGTCGCAAAAATG 60.498 45.833 0.00 0.00 0.00 2.32
5009 6615 3.013921 GGGATGATACCTGTCGCAAAAA 58.986 45.455 0.00 0.00 0.00 1.94
5016 6622 0.759346 AAGCCGGGATGATACCTGTC 59.241 55.000 2.18 0.00 34.74 3.51
5035 6641 3.364441 GCAATGGTGACGCTGCCA 61.364 61.111 0.00 0.00 39.33 4.92
5053 6659 2.507324 GACGAGAGCCCGAGCAAC 60.507 66.667 0.00 0.00 43.56 4.17
5089 6695 1.471119 TGAGTACCGCCCAGTAGAAG 58.529 55.000 0.00 0.00 0.00 2.85
5104 6710 2.500910 CCTCTGCAGGAAGAAGATGAGT 59.499 50.000 15.13 0.00 43.65 3.41
5173 6779 3.208884 GACGCCGAGGCCGATGTAT 62.209 63.158 8.72 0.00 38.22 2.29
5192 6798 0.190815 AGCCCCAGGAACAAAATGGT 59.809 50.000 0.00 0.00 31.85 3.55
5353 6961 5.411053 GCTCCAAGCTATTCTTATGATCACC 59.589 44.000 0.00 0.00 38.45 4.02
5505 7115 7.392673 AGCAGAATTGAACAGATGAACAGTTAT 59.607 33.333 0.00 0.00 0.00 1.89
5565 7175 4.042062 TCAGGGCTGCTACATTAATGCTAT 59.958 41.667 15.48 0.00 0.00 2.97
5609 7219 5.542779 CCAGTTATGGTAGCTCATCTTACC 58.457 45.833 0.00 0.00 42.17 2.85
5699 7309 0.029834 CACTGGCTGAACTGTGTTGC 59.970 55.000 0.00 0.00 36.10 4.17
5832 7452 4.005650 TCTTTGAGTGTCCAATGCTCATC 58.994 43.478 0.00 0.00 38.79 2.92
5937 7557 5.784578 TGCTAGTACAAAGTTCTGACTGA 57.215 39.130 0.00 0.00 35.91 3.41
5938 7558 6.844696 TTTGCTAGTACAAAGTTCTGACTG 57.155 37.500 0.00 0.00 35.91 3.51
6025 7645 3.023119 ACAACCTGATGTGCTTTGACAA 58.977 40.909 0.00 0.00 30.82 3.18
6081 7701 3.519930 GACTCCCCTCTCGCGACC 61.520 72.222 3.71 0.00 0.00 4.79
6087 7707 1.033202 GTGTCTCGGACTCCCCTCTC 61.033 65.000 5.77 0.00 33.15 3.20
6249 7869 5.107375 CGAATGCCAAAAACTTCTCCATTTG 60.107 40.000 0.00 0.00 33.62 2.32
6253 7873 2.288152 GCGAATGCCAAAAACTTCTCCA 60.288 45.455 0.00 0.00 33.98 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.