Multiple sequence alignment - TraesCS3B01G066700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G066700 chr3B 100.000 2999 0 0 1 2999 39641032 39638034 0.000000e+00 5539.0
1 TraesCS3B01G066700 chr3B 90.865 821 50 11 2091 2889 672734078 672733261 0.000000e+00 1077.0
2 TraesCS3B01G066700 chr3B 89.972 359 34 2 2555 2912 672733644 672733287 2.110000e-126 462.0
3 TraesCS3B01G066700 chr3B 97.692 260 6 0 2740 2999 472656611 472656870 5.900000e-122 448.0
4 TraesCS3B01G066700 chr3B 88.920 352 27 6 24 373 39571504 39571163 9.940000e-115 424.0
5 TraesCS3B01G066700 chr3B 93.827 243 15 0 2623 2865 39638361 39638119 1.700000e-97 366.0
6 TraesCS3B01G066700 chr3B 93.506 77 5 0 2840 2916 672732767 672732691 6.790000e-22 115.0
7 TraesCS3B01G066700 chr3B 95.556 45 2 0 2868 2912 672733576 672733532 4.150000e-09 73.1
8 TraesCS3B01G066700 chr3B 89.091 55 6 0 2858 2912 677969408 677969354 5.360000e-08 69.4
9 TraesCS3B01G066700 chr5B 98.072 2594 46 2 407 2999 311961642 311959052 0.000000e+00 4510.0
10 TraesCS3B01G066700 chr5B 92.487 386 20 2 2623 2999 185039009 185038624 7.310000e-151 544.0
11 TraesCS3B01G066700 chr5B 91.336 277 15 2 2731 2998 696408780 696409056 1.310000e-98 370.0
12 TraesCS3B01G066700 chr1A 99.462 2415 11 2 410 2823 237744560 237742147 0.000000e+00 4386.0
13 TraesCS3B01G066700 chr1A 98.349 2302 34 3 409 2709 27319262 27321560 0.000000e+00 4037.0
14 TraesCS3B01G066700 chr1A 95.357 280 13 0 2720 2999 394244069 394244348 2.120000e-121 446.0
15 TraesCS3B01G066700 chr3A 98.507 2411 33 3 410 2818 444446559 444444150 0.000000e+00 4250.0
16 TraesCS3B01G066700 chr3A 91.795 390 28 2 24 409 32097897 32097508 9.460000e-150 540.0
17 TraesCS3B01G066700 chr3A 96.429 280 9 1 2721 2999 444444346 444444067 7.570000e-126 460.0
18 TraesCS3B01G066700 chr2A 98.421 2407 34 4 403 2807 630239159 630236755 0.000000e+00 4231.0
19 TraesCS3B01G066700 chr7A 98.458 2399 36 1 410 2807 473484341 473486739 0.000000e+00 4224.0
20 TraesCS3B01G066700 chr7A 98.698 2305 28 2 406 2709 533735226 533732923 0.000000e+00 4089.0
21 TraesCS3B01G066700 chr4B 98.205 2396 40 2 409 2803 238169294 238171687 0.000000e+00 4183.0
22 TraesCS3B01G066700 chr4B 98.783 2301 27 1 410 2709 312784956 312782656 0.000000e+00 4093.0
23 TraesCS3B01G066700 chr4A 92.228 386 21 2 2623 2999 36320708 36320323 3.400000e-149 538.0
24 TraesCS3B01G066700 chr4A 90.933 386 26 2 2623 2999 590264616 590264231 7.420000e-141 510.0
25 TraesCS3B01G066700 chr3D 85.960 349 23 11 27 373 22292268 22291944 1.710000e-92 350.0
26 TraesCS3B01G066700 chr4D 98.913 92 1 0 2907 2998 54405923 54405832 6.650000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G066700 chr3B 39638034 39641032 2998 True 2952.500 5539 96.91350 1 2999 2 chr3B.!!$R3 2998
1 TraesCS3B01G066700 chr3B 672732691 672734078 1387 True 431.775 1077 92.47475 2091 2916 4 chr3B.!!$R4 825
2 TraesCS3B01G066700 chr5B 311959052 311961642 2590 True 4510.000 4510 98.07200 407 2999 1 chr5B.!!$R2 2592
3 TraesCS3B01G066700 chr1A 237742147 237744560 2413 True 4386.000 4386 99.46200 410 2823 1 chr1A.!!$R1 2413
4 TraesCS3B01G066700 chr1A 27319262 27321560 2298 False 4037.000 4037 98.34900 409 2709 1 chr1A.!!$F1 2300
5 TraesCS3B01G066700 chr3A 444444067 444446559 2492 True 2355.000 4250 97.46800 410 2999 2 chr3A.!!$R2 2589
6 TraesCS3B01G066700 chr2A 630236755 630239159 2404 True 4231.000 4231 98.42100 403 2807 1 chr2A.!!$R1 2404
7 TraesCS3B01G066700 chr7A 473484341 473486739 2398 False 4224.000 4224 98.45800 410 2807 1 chr7A.!!$F1 2397
8 TraesCS3B01G066700 chr7A 533732923 533735226 2303 True 4089.000 4089 98.69800 406 2709 1 chr7A.!!$R1 2303
9 TraesCS3B01G066700 chr4B 238169294 238171687 2393 False 4183.000 4183 98.20500 409 2803 1 chr4B.!!$F1 2394
10 TraesCS3B01G066700 chr4B 312782656 312784956 2300 True 4093.000 4093 98.78300 410 2709 1 chr4B.!!$R1 2299

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.035630 CTCCAAGCCCAACTCTCAGG 60.036 60.0 0.00 0.00 0.0 3.86 F
402 403 0.101040 CGAATCCGGTGCATGCAATT 59.899 50.0 24.58 18.31 0.0 2.32 F
1172 1174 0.814457 TGTTGGTTTGACAGTGCCAC 59.186 50.0 0.00 0.00 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1172 1174 6.250344 ACTCATGTTCACTCATGTTCAATG 57.750 37.5 6.57 0.00 43.70 2.82 R
1803 1806 7.618019 TGTAAGGTTATCCTGCAGATATCTT 57.382 36.0 17.39 16.75 44.35 2.40 R
2693 2941 0.031917 TTATGGTGGCTAGGGGTCGA 60.032 55.0 0.00 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.736483 CAAGCAGCTGACAACCGT 58.264 55.556 20.43 0.00 0.00 4.83
18 19 2.024918 CAAGCAGCTGACAACCGTT 58.975 52.632 20.43 0.00 0.00 4.44
19 20 0.317269 CAAGCAGCTGACAACCGTTG 60.317 55.000 20.43 9.80 0.00 4.10
20 21 2.050985 GCAGCTGACAACCGTTGC 60.051 61.111 20.43 5.13 0.00 4.17
21 22 2.639286 CAGCTGACAACCGTTGCC 59.361 61.111 8.42 0.39 0.00 4.52
22 23 2.186160 CAGCTGACAACCGTTGCCA 61.186 57.895 8.42 5.62 0.00 4.92
23 24 2.186826 AGCTGACAACCGTTGCCAC 61.187 57.895 11.29 4.30 0.00 5.01
24 25 2.186826 GCTGACAACCGTTGCCACT 61.187 57.895 11.29 0.00 0.00 4.00
25 26 1.941812 CTGACAACCGTTGCCACTC 59.058 57.895 11.29 2.24 0.00 3.51
26 27 1.507141 CTGACAACCGTTGCCACTCC 61.507 60.000 11.29 0.00 0.00 3.85
27 28 1.525077 GACAACCGTTGCCACTCCA 60.525 57.895 11.29 0.00 0.00 3.86
28 29 1.782028 GACAACCGTTGCCACTCCAC 61.782 60.000 11.29 0.00 0.00 4.02
29 30 1.821759 CAACCGTTGCCACTCCACA 60.822 57.895 0.00 0.00 0.00 4.17
30 31 1.150536 AACCGTTGCCACTCCACAT 59.849 52.632 0.00 0.00 0.00 3.21
31 32 0.889186 AACCGTTGCCACTCCACATC 60.889 55.000 0.00 0.00 0.00 3.06
32 33 2.040544 CCGTTGCCACTCCACATCC 61.041 63.158 0.00 0.00 0.00 3.51
33 34 1.302431 CGTTGCCACTCCACATCCA 60.302 57.895 0.00 0.00 0.00 3.41
34 35 1.300971 CGTTGCCACTCCACATCCAG 61.301 60.000 0.00 0.00 0.00 3.86
35 36 0.250901 GTTGCCACTCCACATCCAGT 60.251 55.000 0.00 0.00 0.00 4.00
36 37 0.478072 TTGCCACTCCACATCCAGTT 59.522 50.000 0.00 0.00 0.00 3.16
37 38 0.478072 TGCCACTCCACATCCAGTTT 59.522 50.000 0.00 0.00 0.00 2.66
38 39 1.168714 GCCACTCCACATCCAGTTTC 58.831 55.000 0.00 0.00 0.00 2.78
39 40 1.826385 CCACTCCACATCCAGTTTCC 58.174 55.000 0.00 0.00 0.00 3.13
40 41 1.073763 CCACTCCACATCCAGTTTCCA 59.926 52.381 0.00 0.00 0.00 3.53
41 42 2.430465 CACTCCACATCCAGTTTCCAG 58.570 52.381 0.00 0.00 0.00 3.86
42 43 1.271597 ACTCCACATCCAGTTTCCAGC 60.272 52.381 0.00 0.00 0.00 4.85
43 44 0.321564 TCCACATCCAGTTTCCAGCG 60.322 55.000 0.00 0.00 0.00 5.18
44 45 1.503542 CACATCCAGTTTCCAGCGC 59.496 57.895 0.00 0.00 0.00 5.92
45 46 0.957395 CACATCCAGTTTCCAGCGCT 60.957 55.000 2.64 2.64 0.00 5.92
46 47 0.674895 ACATCCAGTTTCCAGCGCTC 60.675 55.000 7.13 0.00 0.00 5.03
47 48 1.448540 ATCCAGTTTCCAGCGCTCG 60.449 57.895 7.13 0.00 0.00 5.03
48 49 1.888436 ATCCAGTTTCCAGCGCTCGA 61.888 55.000 7.13 2.57 0.00 4.04
49 50 1.448540 CCAGTTTCCAGCGCTCGAT 60.449 57.895 7.13 0.00 0.00 3.59
50 51 1.424493 CCAGTTTCCAGCGCTCGATC 61.424 60.000 7.13 3.07 0.00 3.69
51 52 1.517257 AGTTTCCAGCGCTCGATCG 60.517 57.895 7.13 9.36 0.00 3.69
101 102 4.594854 TTGCCCTTCCCTGCGCAA 62.595 61.111 13.05 0.00 38.82 4.85
107 108 4.365111 TTCCCTGCGCAAGGCCAT 62.365 61.111 20.64 0.00 45.89 4.40
110 111 3.818787 CCTGCGCAAGGCCATGTC 61.819 66.667 13.05 2.75 39.93 3.06
111 112 3.057548 CTGCGCAAGGCCATGTCA 61.058 61.111 13.05 7.30 42.61 3.58
112 113 2.361483 TGCGCAAGGCCATGTCAT 60.361 55.556 8.16 0.00 42.61 3.06
113 114 2.332362 CTGCGCAAGGCCATGTCATC 62.332 60.000 13.05 0.00 42.61 2.92
114 115 3.113745 CGCAAGGCCATGTCATCC 58.886 61.111 10.15 0.00 0.00 3.51
115 116 2.484062 CGCAAGGCCATGTCATCCC 61.484 63.158 10.15 0.00 0.00 3.85
116 117 1.076485 GCAAGGCCATGTCATCCCT 60.076 57.895 10.15 0.00 0.00 4.20
117 118 1.105759 GCAAGGCCATGTCATCCCTC 61.106 60.000 10.15 0.00 0.00 4.30
118 119 0.549950 CAAGGCCATGTCATCCCTCT 59.450 55.000 5.01 0.00 0.00 3.69
119 120 0.842635 AAGGCCATGTCATCCCTCTC 59.157 55.000 5.01 0.00 0.00 3.20
120 121 0.326904 AGGCCATGTCATCCCTCTCA 60.327 55.000 5.01 0.00 0.00 3.27
121 122 0.769873 GGCCATGTCATCCCTCTCAT 59.230 55.000 0.00 0.00 0.00 2.90
122 123 1.544982 GGCCATGTCATCCCTCTCATG 60.545 57.143 0.00 0.00 37.83 3.07
123 124 2.563261 CCATGTCATCCCTCTCATGG 57.437 55.000 8.32 8.32 46.91 3.66
125 126 3.404224 CATGTCATCCCTCTCATGGAG 57.596 52.381 0.00 0.00 41.51 3.86
126 127 1.126488 TGTCATCCCTCTCATGGAGC 58.874 55.000 5.86 0.00 40.57 4.70
127 128 1.343782 TGTCATCCCTCTCATGGAGCT 60.344 52.381 5.86 0.00 40.57 4.09
128 129 1.070445 GTCATCCCTCTCATGGAGCTG 59.930 57.143 0.00 4.13 40.57 4.24
129 130 1.129917 CATCCCTCTCATGGAGCTGT 58.870 55.000 0.00 0.00 40.57 4.40
130 131 1.070445 CATCCCTCTCATGGAGCTGTC 59.930 57.143 0.00 0.00 40.57 3.51
131 132 0.689080 TCCCTCTCATGGAGCTGTCC 60.689 60.000 0.00 0.00 44.24 4.02
132 133 1.694133 CCCTCTCATGGAGCTGTCCC 61.694 65.000 0.00 0.00 43.15 4.46
133 134 0.979709 CCTCTCATGGAGCTGTCCCA 60.980 60.000 0.00 0.00 43.15 4.37
134 135 0.177604 CTCTCATGGAGCTGTCCCAC 59.822 60.000 0.00 0.00 43.15 4.61
135 136 1.222936 CTCATGGAGCTGTCCCACC 59.777 63.158 0.00 0.00 43.15 4.61
136 137 2.124983 CATGGAGCTGTCCCACCG 60.125 66.667 0.00 0.00 43.15 4.94
137 138 4.101448 ATGGAGCTGTCCCACCGC 62.101 66.667 0.00 0.00 43.15 5.68
140 141 4.021925 GAGCTGTCCCACCGCCTT 62.022 66.667 0.00 0.00 0.00 4.35
141 142 4.335647 AGCTGTCCCACCGCCTTG 62.336 66.667 0.00 0.00 0.00 3.61
142 143 4.643387 GCTGTCCCACCGCCTTGT 62.643 66.667 0.00 0.00 0.00 3.16
143 144 2.669569 CTGTCCCACCGCCTTGTG 60.670 66.667 0.00 0.00 35.98 3.33
149 150 3.357079 CACCGCCTTGTGGAGCAC 61.357 66.667 0.00 0.00 36.58 4.40
150 151 4.988598 ACCGCCTTGTGGAGCACG 62.989 66.667 0.00 0.00 37.14 5.34
154 155 4.335647 CCTTGTGGAGCACGGCCT 62.336 66.667 0.00 0.00 37.14 5.19
155 156 2.743928 CTTGTGGAGCACGGCCTC 60.744 66.667 0.00 0.00 37.14 4.70
156 157 3.535629 CTTGTGGAGCACGGCCTCA 62.536 63.158 0.00 0.00 37.14 3.86
157 158 3.113514 TTGTGGAGCACGGCCTCAA 62.114 57.895 0.00 0.00 37.14 3.02
158 159 2.743928 GTGGAGCACGGCCTCAAG 60.744 66.667 0.00 0.00 33.47 3.02
159 160 4.020617 TGGAGCACGGCCTCAAGG 62.021 66.667 0.00 0.00 33.47 3.61
160 161 4.021925 GGAGCACGGCCTCAAGGT 62.022 66.667 0.00 0.00 37.57 3.50
161 162 2.435059 GAGCACGGCCTCAAGGTC 60.435 66.667 0.00 0.00 37.57 3.85
162 163 3.240134 GAGCACGGCCTCAAGGTCA 62.240 63.158 0.00 0.00 40.62 4.02
163 164 3.050275 GCACGGCCTCAAGGTCAC 61.050 66.667 0.00 0.00 40.62 3.67
164 165 2.358737 CACGGCCTCAAGGTCACC 60.359 66.667 0.00 0.00 40.62 4.02
165 166 2.526873 ACGGCCTCAAGGTCACCT 60.527 61.111 0.00 0.00 40.62 4.00
166 167 2.147387 ACGGCCTCAAGGTCACCTT 61.147 57.895 2.03 2.03 45.88 3.50
167 168 1.376037 CGGCCTCAAGGTCACCTTC 60.376 63.158 5.94 0.00 42.67 3.46
168 169 1.376037 GGCCTCAAGGTCACCTTCG 60.376 63.158 5.94 2.76 42.67 3.79
169 170 1.371558 GCCTCAAGGTCACCTTCGT 59.628 57.895 5.94 0.00 42.67 3.85
170 171 0.670854 GCCTCAAGGTCACCTTCGTC 60.671 60.000 5.94 0.00 42.67 4.20
171 172 0.679505 CCTCAAGGTCACCTTCGTCA 59.320 55.000 5.94 0.00 42.67 4.35
172 173 1.070134 CCTCAAGGTCACCTTCGTCAA 59.930 52.381 5.94 0.00 42.67 3.18
173 174 2.135933 CTCAAGGTCACCTTCGTCAAC 58.864 52.381 5.94 0.00 42.67 3.18
174 175 1.483004 TCAAGGTCACCTTCGTCAACA 59.517 47.619 5.94 0.00 42.67 3.33
175 176 1.597663 CAAGGTCACCTTCGTCAACAC 59.402 52.381 5.94 0.00 42.67 3.32
176 177 1.805120 AAGGTCACCTTCGTCAACACG 60.805 52.381 2.03 0.00 40.17 4.49
177 178 1.563173 GTCACCTTCGTCAACACGC 59.437 57.895 0.00 0.00 46.28 5.34
178 179 1.142097 TCACCTTCGTCAACACGCA 59.858 52.632 0.00 0.00 46.28 5.24
179 180 0.874175 TCACCTTCGTCAACACGCAG 60.874 55.000 0.00 0.00 46.28 5.18
180 181 2.244651 ACCTTCGTCAACACGCAGC 61.245 57.895 0.00 0.00 46.28 5.25
181 182 2.243957 CCTTCGTCAACACGCAGCA 61.244 57.895 0.00 0.00 46.28 4.41
182 183 1.083401 CTTCGTCAACACGCAGCAC 60.083 57.895 0.00 0.00 46.28 4.40
183 184 1.761244 CTTCGTCAACACGCAGCACA 61.761 55.000 0.00 0.00 46.28 4.57
184 185 1.362406 TTCGTCAACACGCAGCACAA 61.362 50.000 0.00 0.00 46.28 3.33
185 186 1.651132 CGTCAACACGCAGCACAAC 60.651 57.895 0.00 0.00 39.69 3.32
186 187 1.298339 GTCAACACGCAGCACAACC 60.298 57.895 0.00 0.00 0.00 3.77
187 188 1.746991 TCAACACGCAGCACAACCA 60.747 52.632 0.00 0.00 0.00 3.67
188 189 1.586042 CAACACGCAGCACAACCAC 60.586 57.895 0.00 0.00 0.00 4.16
189 190 3.107104 AACACGCAGCACAACCACG 62.107 57.895 0.00 0.00 0.00 4.94
190 191 3.268603 CACGCAGCACAACCACGA 61.269 61.111 0.00 0.00 0.00 4.35
191 192 3.269347 ACGCAGCACAACCACGAC 61.269 61.111 0.00 0.00 0.00 4.34
192 193 4.012895 CGCAGCACAACCACGACC 62.013 66.667 0.00 0.00 0.00 4.79
193 194 2.591715 GCAGCACAACCACGACCT 60.592 61.111 0.00 0.00 0.00 3.85
194 195 2.607892 GCAGCACAACCACGACCTC 61.608 63.158 0.00 0.00 0.00 3.85
195 196 1.227527 CAGCACAACCACGACCTCA 60.228 57.895 0.00 0.00 0.00 3.86
196 197 0.603707 CAGCACAACCACGACCTCAT 60.604 55.000 0.00 0.00 0.00 2.90
197 198 0.320771 AGCACAACCACGACCTCATC 60.321 55.000 0.00 0.00 0.00 2.92
198 199 1.298859 GCACAACCACGACCTCATCC 61.299 60.000 0.00 0.00 0.00 3.51
199 200 0.321671 CACAACCACGACCTCATCCT 59.678 55.000 0.00 0.00 0.00 3.24
200 201 1.056660 ACAACCACGACCTCATCCTT 58.943 50.000 0.00 0.00 0.00 3.36
201 202 1.270839 ACAACCACGACCTCATCCTTG 60.271 52.381 0.00 0.00 0.00 3.61
202 203 0.324943 AACCACGACCTCATCCTTGG 59.675 55.000 0.00 0.00 34.37 3.61
203 204 1.450312 CCACGACCTCATCCTTGGC 60.450 63.158 0.00 0.00 0.00 4.52
204 205 1.599047 CACGACCTCATCCTTGGCT 59.401 57.895 0.00 0.00 0.00 4.75
205 206 0.460987 CACGACCTCATCCTTGGCTC 60.461 60.000 0.00 0.00 0.00 4.70
206 207 1.144936 CGACCTCATCCTTGGCTCC 59.855 63.158 0.00 0.00 0.00 4.70
207 208 1.529309 GACCTCATCCTTGGCTCCC 59.471 63.158 0.00 0.00 0.00 4.30
208 209 0.985490 GACCTCATCCTTGGCTCCCT 60.985 60.000 0.00 0.00 0.00 4.20
209 210 0.985490 ACCTCATCCTTGGCTCCCTC 60.985 60.000 0.00 0.00 0.00 4.30
210 211 0.984961 CCTCATCCTTGGCTCCCTCA 60.985 60.000 0.00 0.00 0.00 3.86
211 212 0.914644 CTCATCCTTGGCTCCCTCAA 59.085 55.000 0.00 0.00 0.00 3.02
212 213 0.620556 TCATCCTTGGCTCCCTCAAC 59.379 55.000 0.00 0.00 0.00 3.18
213 214 0.745845 CATCCTTGGCTCCCTCAACG 60.746 60.000 0.00 0.00 0.00 4.10
214 215 1.201429 ATCCTTGGCTCCCTCAACGT 61.201 55.000 0.00 0.00 0.00 3.99
215 216 1.376037 CCTTGGCTCCCTCAACGTC 60.376 63.158 0.00 0.00 0.00 4.34
216 217 1.674057 CTTGGCTCCCTCAACGTCT 59.326 57.895 0.00 0.00 0.00 4.18
217 218 0.390472 CTTGGCTCCCTCAACGTCTC 60.390 60.000 0.00 0.00 0.00 3.36
218 219 1.827399 TTGGCTCCCTCAACGTCTCC 61.827 60.000 0.00 0.00 0.00 3.71
219 220 2.283529 GGCTCCCTCAACGTCTCCA 61.284 63.158 0.00 0.00 0.00 3.86
220 221 1.671742 GCTCCCTCAACGTCTCCAA 59.328 57.895 0.00 0.00 0.00 3.53
221 222 0.390472 GCTCCCTCAACGTCTCCAAG 60.390 60.000 0.00 0.00 0.00 3.61
222 223 0.390472 CTCCCTCAACGTCTCCAAGC 60.390 60.000 0.00 0.00 0.00 4.01
223 224 1.376037 CCCTCAACGTCTCCAAGCC 60.376 63.158 0.00 0.00 0.00 4.35
224 225 1.376037 CCTCAACGTCTCCAAGCCC 60.376 63.158 0.00 0.00 0.00 5.19
225 226 1.371183 CTCAACGTCTCCAAGCCCA 59.629 57.895 0.00 0.00 0.00 5.36
226 227 0.250295 CTCAACGTCTCCAAGCCCAA 60.250 55.000 0.00 0.00 0.00 4.12
227 228 0.534203 TCAACGTCTCCAAGCCCAAC 60.534 55.000 0.00 0.00 0.00 3.77
228 229 0.535102 CAACGTCTCCAAGCCCAACT 60.535 55.000 0.00 0.00 0.00 3.16
229 230 0.250338 AACGTCTCCAAGCCCAACTC 60.250 55.000 0.00 0.00 0.00 3.01
230 231 1.122019 ACGTCTCCAAGCCCAACTCT 61.122 55.000 0.00 0.00 0.00 3.24
231 232 0.390472 CGTCTCCAAGCCCAACTCTC 60.390 60.000 0.00 0.00 0.00 3.20
232 233 0.687354 GTCTCCAAGCCCAACTCTCA 59.313 55.000 0.00 0.00 0.00 3.27
233 234 0.979665 TCTCCAAGCCCAACTCTCAG 59.020 55.000 0.00 0.00 0.00 3.35
234 235 0.035630 CTCCAAGCCCAACTCTCAGG 60.036 60.000 0.00 0.00 0.00 3.86
235 236 0.473694 TCCAAGCCCAACTCTCAGGA 60.474 55.000 0.00 0.00 0.00 3.86
236 237 0.322008 CCAAGCCCAACTCTCAGGAC 60.322 60.000 0.00 0.00 0.00 3.85
237 238 0.671781 CAAGCCCAACTCTCAGGACG 60.672 60.000 0.00 0.00 0.00 4.79
238 239 1.831652 AAGCCCAACTCTCAGGACGG 61.832 60.000 0.00 0.00 0.00 4.79
239 240 2.283529 GCCCAACTCTCAGGACGGA 61.284 63.158 0.00 0.00 0.00 4.69
240 241 1.827399 GCCCAACTCTCAGGACGGAA 61.827 60.000 0.00 0.00 0.00 4.30
241 242 0.905357 CCCAACTCTCAGGACGGAAT 59.095 55.000 0.00 0.00 0.00 3.01
242 243 1.279271 CCCAACTCTCAGGACGGAATT 59.721 52.381 0.00 0.00 0.00 2.17
243 244 2.500098 CCCAACTCTCAGGACGGAATTA 59.500 50.000 0.00 0.00 0.00 1.40
244 245 3.430929 CCCAACTCTCAGGACGGAATTAG 60.431 52.174 0.00 0.00 0.00 1.73
245 246 3.190874 CAACTCTCAGGACGGAATTAGC 58.809 50.000 0.00 0.00 0.00 3.09
246 247 2.457598 ACTCTCAGGACGGAATTAGCA 58.542 47.619 0.00 0.00 0.00 3.49
247 248 2.428890 ACTCTCAGGACGGAATTAGCAG 59.571 50.000 0.00 0.00 0.00 4.24
248 249 1.137086 TCTCAGGACGGAATTAGCAGC 59.863 52.381 0.00 0.00 0.00 5.25
249 250 0.178068 TCAGGACGGAATTAGCAGCC 59.822 55.000 0.00 0.00 0.00 4.85
250 251 0.179000 CAGGACGGAATTAGCAGCCT 59.821 55.000 0.00 0.00 0.00 4.58
251 252 0.466124 AGGACGGAATTAGCAGCCTC 59.534 55.000 0.00 0.00 0.00 4.70
252 253 0.876342 GGACGGAATTAGCAGCCTCG 60.876 60.000 0.00 0.00 0.00 4.63
253 254 0.876342 GACGGAATTAGCAGCCTCGG 60.876 60.000 0.00 0.00 0.00 4.63
254 255 1.327690 ACGGAATTAGCAGCCTCGGA 61.328 55.000 0.00 0.00 0.00 4.55
255 256 0.598680 CGGAATTAGCAGCCTCGGAG 60.599 60.000 0.00 0.00 0.00 4.63
256 257 0.250081 GGAATTAGCAGCCTCGGAGG 60.250 60.000 19.95 19.95 38.80 4.30
257 258 0.250081 GAATTAGCAGCCTCGGAGGG 60.250 60.000 24.81 10.77 35.37 4.30
258 259 1.700042 AATTAGCAGCCTCGGAGGGG 61.700 60.000 24.81 2.33 35.37 4.79
259 260 2.898472 ATTAGCAGCCTCGGAGGGGT 62.898 60.000 24.81 16.47 35.37 4.95
265 266 2.442272 CCTCGGAGGGGTCGACAT 60.442 66.667 18.91 1.93 32.86 3.06
266 267 2.786495 CCTCGGAGGGGTCGACATG 61.786 68.421 18.91 0.00 32.86 3.21
267 268 2.758327 TCGGAGGGGTCGACATGG 60.758 66.667 18.91 0.00 0.00 3.66
268 269 3.075005 CGGAGGGGTCGACATGGT 61.075 66.667 18.91 0.00 0.00 3.55
269 270 2.584608 GGAGGGGTCGACATGGTG 59.415 66.667 18.91 0.00 0.00 4.17
270 271 2.291043 GGAGGGGTCGACATGGTGT 61.291 63.158 18.91 0.00 0.00 4.16
271 272 1.218316 GAGGGGTCGACATGGTGTC 59.782 63.158 18.91 1.02 43.65 3.67
272 273 2.240162 GAGGGGTCGACATGGTGTCC 62.240 65.000 18.91 7.06 44.20 4.02
273 274 2.267961 GGGTCGACATGGTGTCCC 59.732 66.667 18.91 2.40 44.20 4.46
274 275 2.291043 GGGTCGACATGGTGTCCCT 61.291 63.158 18.91 0.00 44.20 4.20
275 276 0.974010 GGGTCGACATGGTGTCCCTA 60.974 60.000 18.91 0.00 44.20 3.53
276 277 0.175073 GGTCGACATGGTGTCCCTAC 59.825 60.000 18.91 1.62 44.20 3.18
277 278 0.175073 GTCGACATGGTGTCCCTACC 59.825 60.000 11.55 0.00 44.20 3.18
278 279 1.141019 CGACATGGTGTCCCTACCG 59.859 63.158 0.00 0.00 44.20 4.02
279 280 1.520666 GACATGGTGTCCCTACCGG 59.479 63.158 0.00 0.00 43.87 5.28
280 281 0.974010 GACATGGTGTCCCTACCGGA 60.974 60.000 9.46 0.00 43.87 5.14
336 337 3.453679 GGCTCGCCGAGTCCTTCT 61.454 66.667 16.50 0.00 31.39 2.85
337 338 2.103340 GCTCGCCGAGTCCTTCTC 59.897 66.667 16.50 0.00 39.62 2.87
345 346 3.267908 GAGTCCTTCTCGGAGGTCA 57.732 57.895 4.96 0.00 44.20 4.02
346 347 1.770294 GAGTCCTTCTCGGAGGTCAT 58.230 55.000 4.96 0.00 44.20 3.06
347 348 1.407258 GAGTCCTTCTCGGAGGTCATG 59.593 57.143 4.96 0.00 44.20 3.07
348 349 0.179097 GTCCTTCTCGGAGGTCATGC 60.179 60.000 4.96 0.00 44.20 4.06
349 350 1.144936 CCTTCTCGGAGGTCATGCC 59.855 63.158 4.96 0.00 33.16 4.40
350 351 1.144936 CTTCTCGGAGGTCATGCCC 59.855 63.158 4.96 0.00 38.26 5.36
351 352 2.635229 CTTCTCGGAGGTCATGCCCG 62.635 65.000 4.96 8.64 44.22 6.13
352 353 4.227134 CTCGGAGGTCATGCCCGG 62.227 72.222 13.04 0.00 43.16 5.73
356 357 4.899239 GAGGTCATGCCCGGCGAG 62.899 72.222 9.30 0.00 38.26 5.03
365 366 4.560856 CCCGGCGAGCTCGAGAAG 62.561 72.222 38.74 23.42 43.02 2.85
375 376 3.335737 CTCGAGAAGCTGATCGCAA 57.664 52.632 6.58 0.25 42.61 4.85
376 377 1.198767 CTCGAGAAGCTGATCGCAAG 58.801 55.000 6.58 5.77 42.61 4.01
377 378 0.179127 TCGAGAAGCTGATCGCAAGG 60.179 55.000 14.31 0.00 42.61 3.61
378 379 1.760268 CGAGAAGCTGATCGCAAGGC 61.760 60.000 7.78 0.52 42.61 4.35
379 380 0.461693 GAGAAGCTGATCGCAAGGCT 60.462 55.000 11.20 2.59 42.61 4.58
380 381 0.743701 AGAAGCTGATCGCAAGGCTG 60.744 55.000 11.20 0.00 42.61 4.85
381 382 1.002868 AAGCTGATCGCAAGGCTGT 60.003 52.632 11.20 0.00 42.61 4.40
382 383 1.023513 AAGCTGATCGCAAGGCTGTC 61.024 55.000 11.20 0.00 42.61 3.51
383 384 2.467826 GCTGATCGCAAGGCTGTCC 61.468 63.158 4.93 0.00 38.92 4.02
384 385 2.125552 TGATCGCAAGGCTGTCCG 60.126 61.111 0.00 0.00 37.47 4.79
385 386 2.184322 GATCGCAAGGCTGTCCGA 59.816 61.111 6.83 6.83 37.47 4.55
386 387 1.447838 GATCGCAAGGCTGTCCGAA 60.448 57.895 8.18 0.00 37.47 4.30
387 388 0.811616 GATCGCAAGGCTGTCCGAAT 60.812 55.000 8.18 0.00 37.47 3.34
388 389 0.811616 ATCGCAAGGCTGTCCGAATC 60.812 55.000 8.18 0.00 37.47 2.52
389 390 2.464459 CGCAAGGCTGTCCGAATCC 61.464 63.158 0.00 0.00 37.47 3.01
390 391 2.464459 GCAAGGCTGTCCGAATCCG 61.464 63.158 0.00 0.00 37.47 4.18
400 401 3.186106 CGAATCCGGTGCATGCAA 58.814 55.556 24.58 7.19 0.00 4.08
401 402 1.729276 CGAATCCGGTGCATGCAAT 59.271 52.632 24.58 9.63 0.00 3.56
402 403 0.101040 CGAATCCGGTGCATGCAATT 59.899 50.000 24.58 18.31 0.00 2.32
403 404 1.333308 CGAATCCGGTGCATGCAATTA 59.667 47.619 24.58 8.89 0.00 1.40
404 405 2.731217 GAATCCGGTGCATGCAATTAC 58.269 47.619 24.58 9.96 0.00 1.89
1172 1174 0.814457 TGTTGGTTTGACAGTGCCAC 59.186 50.000 0.00 0.00 0.00 5.01
1803 1806 1.913419 GAGGACAGGGTGGTGGATTTA 59.087 52.381 0.00 0.00 0.00 1.40
1996 1999 9.066892 TGAAGTTGAAGCATATTAAAGACAAGT 57.933 29.630 0.00 0.00 0.00 3.16
2633 2832 4.278310 GAAGCCCATGTTGGTTAGGTTAT 58.722 43.478 0.00 0.00 35.17 1.89
2668 2916 0.544697 CCCTAGCCACCGTAAACCAT 59.455 55.000 0.00 0.00 0.00 3.55
2669 2917 1.474498 CCCTAGCCACCGTAAACCATC 60.474 57.143 0.00 0.00 0.00 3.51
2670 2918 1.208535 CCTAGCCACCGTAAACCATCA 59.791 52.381 0.00 0.00 0.00 3.07
2671 2919 2.158813 CCTAGCCACCGTAAACCATCAT 60.159 50.000 0.00 0.00 0.00 2.45
2672 2920 1.750193 AGCCACCGTAAACCATCATG 58.250 50.000 0.00 0.00 0.00 3.07
2673 2921 0.738389 GCCACCGTAAACCATCATGG 59.262 55.000 0.54 0.54 45.02 3.66
2687 2935 5.835113 CCATCATGGTTAGGTTAAGTTGG 57.165 43.478 0.00 0.00 31.35 3.77
2688 2936 5.261216 CCATCATGGTTAGGTTAAGTTGGT 58.739 41.667 0.00 0.00 31.35 3.67
2689 2937 5.714806 CCATCATGGTTAGGTTAAGTTGGTT 59.285 40.000 0.00 0.00 31.35 3.67
2690 2938 6.127730 CCATCATGGTTAGGTTAAGTTGGTTC 60.128 42.308 0.00 0.00 31.35 3.62
2691 2939 5.318630 TCATGGTTAGGTTAAGTTGGTTCC 58.681 41.667 0.00 0.00 0.00 3.62
2692 2940 3.742385 TGGTTAGGTTAAGTTGGTTCCG 58.258 45.455 0.00 0.00 0.00 4.30
2693 2941 3.136260 TGGTTAGGTTAAGTTGGTTCCGT 59.864 43.478 0.00 0.00 0.00 4.69
2694 2942 3.748048 GGTTAGGTTAAGTTGGTTCCGTC 59.252 47.826 0.00 0.00 0.00 4.79
2695 2943 2.159327 AGGTTAAGTTGGTTCCGTCG 57.841 50.000 0.00 0.00 0.00 5.12
2696 2944 1.688197 AGGTTAAGTTGGTTCCGTCGA 59.312 47.619 0.00 0.00 0.00 4.20
2697 2945 1.794701 GGTTAAGTTGGTTCCGTCGAC 59.205 52.381 5.18 5.18 0.00 4.20
2698 2946 1.794701 GTTAAGTTGGTTCCGTCGACC 59.205 52.381 10.58 0.00 37.69 4.79
2699 2947 0.318120 TAAGTTGGTTCCGTCGACCC 59.682 55.000 10.58 5.77 36.30 4.46
2700 2948 2.357881 GTTGGTTCCGTCGACCCC 60.358 66.667 10.58 5.66 36.30 4.95
2701 2949 2.524887 TTGGTTCCGTCGACCCCT 60.525 61.111 10.58 0.00 36.30 4.79
2702 2950 1.228831 TTGGTTCCGTCGACCCCTA 60.229 57.895 10.58 0.00 36.30 3.53
2703 2951 1.252904 TTGGTTCCGTCGACCCCTAG 61.253 60.000 10.58 0.00 36.30 3.02
2704 2952 2.493501 GTTCCGTCGACCCCTAGC 59.506 66.667 10.58 0.00 0.00 3.42
2705 2953 2.757099 TTCCGTCGACCCCTAGCC 60.757 66.667 10.58 0.00 0.00 3.93
2706 2954 3.588817 TTCCGTCGACCCCTAGCCA 62.589 63.158 10.58 0.00 0.00 4.75
2707 2955 3.834799 CCGTCGACCCCTAGCCAC 61.835 72.222 10.58 0.00 0.00 5.01
2708 2956 3.834799 CGTCGACCCCTAGCCACC 61.835 72.222 10.58 0.00 0.00 4.61
2709 2957 2.682494 GTCGACCCCTAGCCACCA 60.682 66.667 3.51 0.00 0.00 4.17
2710 2958 2.064581 GTCGACCCCTAGCCACCAT 61.065 63.158 3.51 0.00 0.00 3.55
2711 2959 0.757935 GTCGACCCCTAGCCACCATA 60.758 60.000 3.51 0.00 0.00 2.74
2712 2960 0.031917 TCGACCCCTAGCCACCATAA 60.032 55.000 0.00 0.00 0.00 1.90
2713 2961 0.834612 CGACCCCTAGCCACCATAAA 59.165 55.000 0.00 0.00 0.00 1.40
2714 2962 1.474498 CGACCCCTAGCCACCATAAAC 60.474 57.143 0.00 0.00 0.00 2.01
2715 2963 0.924090 ACCCCTAGCCACCATAAACC 59.076 55.000 0.00 0.00 0.00 3.27
2716 2964 0.923358 CCCCTAGCCACCATAAACCA 59.077 55.000 0.00 0.00 0.00 3.67
2717 2965 1.499007 CCCCTAGCCACCATAAACCAT 59.501 52.381 0.00 0.00 0.00 3.55
2718 2966 2.714250 CCCCTAGCCACCATAAACCATA 59.286 50.000 0.00 0.00 0.00 2.74
2719 2967 3.139397 CCCCTAGCCACCATAAACCATAA 59.861 47.826 0.00 0.00 0.00 1.90
2720 2968 4.202673 CCCCTAGCCACCATAAACCATAAT 60.203 45.833 0.00 0.00 0.00 1.28
2721 2969 4.766891 CCCTAGCCACCATAAACCATAATG 59.233 45.833 0.00 0.00 0.00 1.90
2722 2970 4.766891 CCTAGCCACCATAAACCATAATGG 59.233 45.833 0.00 0.00 46.76 3.16
2737 2985 5.445964 CCATAATGGTTAGCTTAAGGTGGT 58.554 41.667 17.34 0.00 31.35 4.16
2738 2986 5.891551 CCATAATGGTTAGCTTAAGGTGGTT 59.108 40.000 17.34 7.12 31.35 3.67
2739 2987 6.039382 CCATAATGGTTAGCTTAAGGTGGTTC 59.961 42.308 17.34 5.08 31.35 3.62
2740 2988 3.428413 TGGTTAGCTTAAGGTGGTTCC 57.572 47.619 17.34 13.02 0.00 3.62
2741 2989 2.289819 TGGTTAGCTTAAGGTGGTTCCG 60.290 50.000 17.34 0.00 41.99 4.30
2742 2990 2.289882 GGTTAGCTTAAGGTGGTTCCGT 60.290 50.000 17.34 0.00 41.99 4.69
2743 2991 2.998670 GTTAGCTTAAGGTGGTTCCGTC 59.001 50.000 17.34 0.00 41.99 4.79
2744 2992 0.037605 AGCTTAAGGTGGTTCCGTCG 60.038 55.000 6.33 0.00 41.99 5.12
2745 2993 0.037975 GCTTAAGGTGGTTCCGTCGA 60.038 55.000 4.29 0.00 41.99 4.20
2746 2994 1.706443 CTTAAGGTGGTTCCGTCGAC 58.294 55.000 5.18 5.18 41.99 4.20
2747 2995 0.318120 TTAAGGTGGTTCCGTCGACC 59.682 55.000 10.58 0.00 41.99 4.79
2748 2996 1.535204 TAAGGTGGTTCCGTCGACCC 61.535 60.000 10.58 5.77 41.99 4.46
2749 2997 4.383861 GGTGGTTCCGTCGACCCC 62.384 72.222 10.58 5.66 36.30 4.95
2750 2998 4.729856 GTGGTTCCGTCGACCCCG 62.730 72.222 10.58 0.00 36.30 5.73
2751 2999 4.972733 TGGTTCCGTCGACCCCGA 62.973 66.667 10.58 0.00 43.35 5.14
2752 3000 4.125695 GGTTCCGTCGACCCCGAG 62.126 72.222 10.58 0.00 46.52 4.63
2753 3001 4.790861 GTTCCGTCGACCCCGAGC 62.791 72.222 10.58 1.60 46.52 5.03
2761 3009 3.384532 GACCCCGAGCCACCGTAA 61.385 66.667 0.00 0.00 0.00 3.18
2762 3010 2.924101 ACCCCGAGCCACCGTAAA 60.924 61.111 0.00 0.00 0.00 2.01
2763 3011 2.435410 CCCCGAGCCACCGTAAAC 60.435 66.667 0.00 0.00 0.00 2.01
2764 3012 2.435410 CCCGAGCCACCGTAAACC 60.435 66.667 0.00 0.00 0.00 3.27
2765 3013 2.344500 CCGAGCCACCGTAAACCA 59.656 61.111 0.00 0.00 0.00 3.67
2766 3014 1.078708 CCGAGCCACCGTAAACCAT 60.079 57.895 0.00 0.00 0.00 3.55
2767 3015 1.087771 CCGAGCCACCGTAAACCATC 61.088 60.000 0.00 0.00 0.00 3.51
2768 3016 0.390603 CGAGCCACCGTAAACCATCA 60.391 55.000 0.00 0.00 0.00 3.07
2769 3017 1.742411 CGAGCCACCGTAAACCATCAT 60.742 52.381 0.00 0.00 0.00 2.45
2770 3018 1.670811 GAGCCACCGTAAACCATCATG 59.329 52.381 0.00 0.00 0.00 3.07
2771 3019 0.738389 GCCACCGTAAACCATCATGG 59.262 55.000 0.54 0.54 45.02 3.66
2785 3033 5.835113 CCATCATGGTTAGGTTAAGTTGG 57.165 43.478 0.00 0.00 31.35 3.77
2786 3034 5.261216 CCATCATGGTTAGGTTAAGTTGGT 58.739 41.667 0.00 0.00 31.35 3.67
2787 3035 5.714806 CCATCATGGTTAGGTTAAGTTGGTT 59.285 40.000 0.00 0.00 31.35 3.67
2788 3036 6.127730 CCATCATGGTTAGGTTAAGTTGGTTC 60.128 42.308 0.00 0.00 31.35 3.62
2789 3037 5.318630 TCATGGTTAGGTTAAGTTGGTTCC 58.681 41.667 0.00 0.00 0.00 3.62
2790 3038 3.742385 TGGTTAGGTTAAGTTGGTTCCG 58.258 45.455 0.00 0.00 0.00 4.30
2791 3039 3.136260 TGGTTAGGTTAAGTTGGTTCCGT 59.864 43.478 0.00 0.00 0.00 4.69
2792 3040 3.748048 GGTTAGGTTAAGTTGGTTCCGTC 59.252 47.826 0.00 0.00 0.00 4.79
2793 3041 2.159327 AGGTTAAGTTGGTTCCGTCG 57.841 50.000 0.00 0.00 0.00 5.12
2794 3042 1.688197 AGGTTAAGTTGGTTCCGTCGA 59.312 47.619 0.00 0.00 0.00 4.20
2795 3043 1.794701 GGTTAAGTTGGTTCCGTCGAC 59.205 52.381 5.18 5.18 0.00 4.20
2796 3044 1.794701 GTTAAGTTGGTTCCGTCGACC 59.205 52.381 10.58 0.00 37.69 4.79
2797 3045 0.318120 TAAGTTGGTTCCGTCGACCC 59.682 55.000 10.58 5.77 36.30 4.46
2798 3046 2.357881 GTTGGTTCCGTCGACCCC 60.358 66.667 10.58 5.66 36.30 4.95
2799 3047 3.993584 TTGGTTCCGTCGACCCCG 61.994 66.667 10.58 0.00 36.30 5.73
2800 3048 4.972733 TGGTTCCGTCGACCCCGA 62.973 66.667 10.58 0.00 43.35 5.14
2801 3049 4.125695 GGTTCCGTCGACCCCGAG 62.126 72.222 10.58 0.00 46.52 4.63
2802 3050 4.790861 GTTCCGTCGACCCCGAGC 62.791 72.222 10.58 1.60 46.52 5.03
2809 3057 3.151710 CGACCCCGAGCCACCATA 61.152 66.667 0.00 0.00 38.22 2.74
2810 3058 2.727392 CGACCCCGAGCCACCATAA 61.727 63.158 0.00 0.00 38.22 1.90
2811 3059 1.605453 GACCCCGAGCCACCATAAA 59.395 57.895 0.00 0.00 0.00 1.40
2812 3060 0.746923 GACCCCGAGCCACCATAAAC 60.747 60.000 0.00 0.00 0.00 2.01
2813 3061 1.453197 CCCCGAGCCACCATAAACC 60.453 63.158 0.00 0.00 0.00 3.27
2814 3062 1.301623 CCCGAGCCACCATAAACCA 59.698 57.895 0.00 0.00 0.00 3.67
2815 3063 0.106719 CCCGAGCCACCATAAACCAT 60.107 55.000 0.00 0.00 0.00 3.55
2816 3064 1.308998 CCGAGCCACCATAAACCATC 58.691 55.000 0.00 0.00 0.00 3.51
2817 3065 1.408127 CCGAGCCACCATAAACCATCA 60.408 52.381 0.00 0.00 0.00 3.07
2818 3066 2.575532 CGAGCCACCATAAACCATCAT 58.424 47.619 0.00 0.00 0.00 2.45
2819 3067 2.291465 CGAGCCACCATAAACCATCATG 59.709 50.000 0.00 0.00 0.00 3.07
2820 3068 2.624838 GAGCCACCATAAACCATCATGG 59.375 50.000 0.54 0.54 46.05 3.66
2834 3082 5.835113 CCATCATGGTTAGGTTAAGTTGG 57.165 43.478 0.00 0.00 31.35 3.77
2835 3083 5.261216 CCATCATGGTTAGGTTAAGTTGGT 58.739 41.667 0.00 0.00 31.35 3.67
2836 3084 5.714806 CCATCATGGTTAGGTTAAGTTGGTT 59.285 40.000 0.00 0.00 31.35 3.67
2837 3085 6.127730 CCATCATGGTTAGGTTAAGTTGGTTC 60.128 42.308 0.00 0.00 31.35 3.62
2838 3086 5.318630 TCATGGTTAGGTTAAGTTGGTTCC 58.681 41.667 0.00 0.00 0.00 3.62
2839 3087 3.742385 TGGTTAGGTTAAGTTGGTTCCG 58.258 45.455 0.00 0.00 0.00 4.30
2840 3088 3.136260 TGGTTAGGTTAAGTTGGTTCCGT 59.864 43.478 0.00 0.00 0.00 4.69
2841 3089 3.748048 GGTTAGGTTAAGTTGGTTCCGTC 59.252 47.826 0.00 0.00 0.00 4.79
2842 3090 2.159327 AGGTTAAGTTGGTTCCGTCG 57.841 50.000 0.00 0.00 0.00 5.12
2843 3091 1.688197 AGGTTAAGTTGGTTCCGTCGA 59.312 47.619 0.00 0.00 0.00 4.20
2844 3092 1.794701 GGTTAAGTTGGTTCCGTCGAC 59.205 52.381 5.18 5.18 0.00 4.20
2845 3093 1.794701 GTTAAGTTGGTTCCGTCGACC 59.205 52.381 10.58 0.00 37.69 4.79
2846 3094 0.318120 TAAGTTGGTTCCGTCGACCC 59.682 55.000 10.58 5.77 36.30 4.46
2847 3095 2.357881 GTTGGTTCCGTCGACCCC 60.358 66.667 10.58 5.66 36.30 4.95
2848 3096 3.993584 TTGGTTCCGTCGACCCCG 61.994 66.667 10.58 0.00 36.30 5.73
2849 3097 4.972733 TGGTTCCGTCGACCCCGA 62.973 66.667 10.58 0.00 43.35 5.14
2850 3098 4.125695 GGTTCCGTCGACCCCGAG 62.126 72.222 10.58 0.00 46.52 4.63
2851 3099 4.790861 GTTCCGTCGACCCCGAGC 62.791 72.222 10.58 1.60 46.52 5.03
2858 3106 3.151710 CGACCCCGAGCCACCATA 61.152 66.667 0.00 0.00 38.22 2.74
2859 3107 2.727392 CGACCCCGAGCCACCATAA 61.727 63.158 0.00 0.00 38.22 1.90
2860 3108 1.605453 GACCCCGAGCCACCATAAA 59.395 57.895 0.00 0.00 0.00 1.40
2861 3109 0.746923 GACCCCGAGCCACCATAAAC 60.747 60.000 0.00 0.00 0.00 2.01
2862 3110 1.453197 CCCCGAGCCACCATAAACC 60.453 63.158 0.00 0.00 0.00 3.27
2863 3111 1.301623 CCCGAGCCACCATAAACCA 59.698 57.895 0.00 0.00 0.00 3.67
2916 3855 1.816074 GAGCCACCGTAAACCATCAA 58.184 50.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.317269 CAACGGTTGTCAGCTGCTTG 60.317 55.000 9.47 1.28 0.00 4.01
2 3 2.546494 GCAACGGTTGTCAGCTGCT 61.546 57.895 20.92 0.00 30.58 4.24
3 4 2.050985 GCAACGGTTGTCAGCTGC 60.051 61.111 20.92 4.92 0.00 5.25
4 5 2.186160 TGGCAACGGTTGTCAGCTG 61.186 57.895 23.11 7.63 40.96 4.24
5 6 2.191908 TGGCAACGGTTGTCAGCT 59.808 55.556 23.11 0.00 40.96 4.24
8 9 1.525077 GGAGTGGCAACGGTTGTCA 60.525 57.895 23.11 23.11 44.14 3.58
9 10 1.525077 TGGAGTGGCAACGGTTGTC 60.525 57.895 18.11 18.11 42.51 3.18
10 11 1.822186 GTGGAGTGGCAACGGTTGT 60.822 57.895 20.92 2.11 42.51 3.32
11 12 1.172180 ATGTGGAGTGGCAACGGTTG 61.172 55.000 16.35 16.35 42.51 3.77
12 13 0.889186 GATGTGGAGTGGCAACGGTT 60.889 55.000 0.00 0.00 42.51 4.44
13 14 1.302511 GATGTGGAGTGGCAACGGT 60.303 57.895 0.00 0.00 42.51 4.83
14 15 2.040544 GGATGTGGAGTGGCAACGG 61.041 63.158 0.00 0.00 42.51 4.44
15 16 1.300971 CTGGATGTGGAGTGGCAACG 61.301 60.000 0.00 0.00 42.51 4.10
16 17 0.250901 ACTGGATGTGGAGTGGCAAC 60.251 55.000 0.00 0.00 0.00 4.17
17 18 0.478072 AACTGGATGTGGAGTGGCAA 59.522 50.000 0.00 0.00 0.00 4.52
18 19 0.478072 AAACTGGATGTGGAGTGGCA 59.522 50.000 0.00 0.00 0.00 4.92
19 20 1.168714 GAAACTGGATGTGGAGTGGC 58.831 55.000 0.00 0.00 0.00 5.01
20 21 1.073763 TGGAAACTGGATGTGGAGTGG 59.926 52.381 0.00 0.00 0.00 4.00
21 22 2.430465 CTGGAAACTGGATGTGGAGTG 58.570 52.381 0.00 0.00 0.00 3.51
22 23 1.271597 GCTGGAAACTGGATGTGGAGT 60.272 52.381 0.00 0.00 0.00 3.85
23 24 1.457346 GCTGGAAACTGGATGTGGAG 58.543 55.000 0.00 0.00 0.00 3.86
24 25 0.321564 CGCTGGAAACTGGATGTGGA 60.322 55.000 0.00 0.00 0.00 4.02
25 26 1.926511 GCGCTGGAAACTGGATGTGG 61.927 60.000 0.00 0.00 0.00 4.17
26 27 0.957395 AGCGCTGGAAACTGGATGTG 60.957 55.000 10.39 0.00 0.00 3.21
27 28 0.674895 GAGCGCTGGAAACTGGATGT 60.675 55.000 18.48 0.00 0.00 3.06
28 29 1.699656 CGAGCGCTGGAAACTGGATG 61.700 60.000 18.48 0.00 0.00 3.51
29 30 1.448540 CGAGCGCTGGAAACTGGAT 60.449 57.895 18.48 0.00 0.00 3.41
30 31 1.888436 ATCGAGCGCTGGAAACTGGA 61.888 55.000 26.11 1.63 0.00 3.86
31 32 1.424493 GATCGAGCGCTGGAAACTGG 61.424 60.000 26.11 0.00 0.00 4.00
32 33 1.746727 CGATCGAGCGCTGGAAACTG 61.747 60.000 26.11 11.94 0.00 3.16
33 34 1.517257 CGATCGAGCGCTGGAAACT 60.517 57.895 26.11 10.10 0.00 2.66
34 35 2.998667 CGATCGAGCGCTGGAAAC 59.001 61.111 26.11 20.02 0.00 2.78
90 91 4.365111 ATGGCCTTGCGCAGGGAA 62.365 61.111 39.53 26.82 44.16 3.97
94 95 2.332362 GATGACATGGCCTTGCGCAG 62.332 60.000 18.17 0.00 40.31 5.18
95 96 2.361483 ATGACATGGCCTTGCGCA 60.361 55.556 18.17 5.66 40.31 6.09
96 97 2.410469 GATGACATGGCCTTGCGC 59.590 61.111 18.17 0.00 0.00 6.09
97 98 2.484062 GGGATGACATGGCCTTGCG 61.484 63.158 18.17 0.00 0.00 4.85
98 99 1.076485 AGGGATGACATGGCCTTGC 60.076 57.895 18.17 11.46 0.00 4.01
99 100 0.549950 AGAGGGATGACATGGCCTTG 59.450 55.000 16.76 16.76 0.00 3.61
100 101 0.842635 GAGAGGGATGACATGGCCTT 59.157 55.000 3.32 0.00 0.00 4.35
101 102 0.326904 TGAGAGGGATGACATGGCCT 60.327 55.000 3.32 0.00 0.00 5.19
102 103 0.769873 ATGAGAGGGATGACATGGCC 59.230 55.000 0.00 0.00 0.00 5.36
103 104 1.893544 CATGAGAGGGATGACATGGC 58.106 55.000 0.00 0.00 37.18 4.40
105 106 2.550423 GCTCCATGAGAGGGATGACATG 60.550 54.545 11.63 0.00 43.46 3.21
106 107 1.698532 GCTCCATGAGAGGGATGACAT 59.301 52.381 11.63 0.00 43.46 3.06
107 108 1.126488 GCTCCATGAGAGGGATGACA 58.874 55.000 11.63 0.00 43.46 3.58
108 109 1.070445 CAGCTCCATGAGAGGGATGAC 59.930 57.143 11.63 0.00 43.46 3.06
109 110 1.343782 ACAGCTCCATGAGAGGGATGA 60.344 52.381 11.63 0.00 43.46 2.92
110 111 1.070445 GACAGCTCCATGAGAGGGATG 59.930 57.143 11.63 0.00 43.46 3.51
111 112 1.422531 GACAGCTCCATGAGAGGGAT 58.577 55.000 11.63 0.00 43.46 3.85
112 113 0.689080 GGACAGCTCCATGAGAGGGA 60.689 60.000 11.63 0.00 43.46 4.20
113 114 1.694133 GGGACAGCTCCATGAGAGGG 61.694 65.000 11.63 0.00 43.46 4.30
114 115 0.979709 TGGGACAGCTCCATGAGAGG 60.980 60.000 11.63 1.42 43.46 3.69
115 116 0.177604 GTGGGACAGCTCCATGAGAG 59.822 60.000 0.00 0.06 46.29 3.20
116 117 2.290847 GTGGGACAGCTCCATGAGA 58.709 57.895 0.00 0.00 41.80 3.27
117 118 4.950479 GTGGGACAGCTCCATGAG 57.050 61.111 0.00 0.00 41.80 2.90
126 127 2.669569 CACAAGGCGGTGGGACAG 60.670 66.667 4.67 0.00 41.80 3.51
132 133 3.357079 GTGCTCCACAAGGCGGTG 61.357 66.667 5.51 5.51 38.52 4.94
133 134 4.988598 CGTGCTCCACAAGGCGGT 62.989 66.667 0.00 0.00 33.40 5.68
138 139 2.743928 GAGGCCGTGCTCCACAAG 60.744 66.667 0.00 0.00 33.40 3.16
139 140 3.113514 TTGAGGCCGTGCTCCACAA 62.114 57.895 0.00 0.00 33.40 3.33
140 141 3.535629 CTTGAGGCCGTGCTCCACA 62.536 63.158 0.00 0.00 33.40 4.17
141 142 2.743928 CTTGAGGCCGTGCTCCAC 60.744 66.667 0.00 0.00 0.00 4.02
142 143 4.020617 CCTTGAGGCCGTGCTCCA 62.021 66.667 0.00 0.00 0.00 3.86
143 144 3.959991 GACCTTGAGGCCGTGCTCC 62.960 68.421 0.00 0.00 39.32 4.70
144 145 2.435059 GACCTTGAGGCCGTGCTC 60.435 66.667 0.00 0.00 39.32 4.26
145 146 3.241530 TGACCTTGAGGCCGTGCT 61.242 61.111 0.00 0.00 39.32 4.40
146 147 3.050275 GTGACCTTGAGGCCGTGC 61.050 66.667 0.00 0.00 39.32 5.34
147 148 2.358737 GGTGACCTTGAGGCCGTG 60.359 66.667 0.00 0.00 39.32 4.94
148 149 2.113243 GAAGGTGACCTTGAGGCCGT 62.113 60.000 23.60 0.00 44.82 5.68
149 150 1.376037 GAAGGTGACCTTGAGGCCG 60.376 63.158 23.60 0.00 44.82 6.13
150 151 1.376037 CGAAGGTGACCTTGAGGCC 60.376 63.158 23.60 5.73 44.82 5.19
151 152 0.670854 GACGAAGGTGACCTTGAGGC 60.671 60.000 23.60 13.99 44.82 4.70
152 153 0.679505 TGACGAAGGTGACCTTGAGG 59.320 55.000 23.60 12.90 44.82 3.86
153 154 2.135933 GTTGACGAAGGTGACCTTGAG 58.864 52.381 23.60 17.29 44.82 3.02
154 155 1.483004 TGTTGACGAAGGTGACCTTGA 59.517 47.619 23.60 0.00 44.82 3.02
155 156 1.597663 GTGTTGACGAAGGTGACCTTG 59.402 52.381 23.60 15.86 44.82 3.61
157 158 3.680842 GTGTTGACGAAGGTGACCT 57.319 52.632 0.00 0.00 33.87 3.85
168 169 1.298339 GGTTGTGCTGCGTGTTGAC 60.298 57.895 0.00 0.00 0.00 3.18
169 170 1.746991 TGGTTGTGCTGCGTGTTGA 60.747 52.632 0.00 0.00 0.00 3.18
170 171 1.586042 GTGGTTGTGCTGCGTGTTG 60.586 57.895 0.00 0.00 0.00 3.33
171 172 2.798009 GTGGTTGTGCTGCGTGTT 59.202 55.556 0.00 0.00 0.00 3.32
172 173 3.572539 CGTGGTTGTGCTGCGTGT 61.573 61.111 0.00 0.00 0.00 4.49
173 174 3.268603 TCGTGGTTGTGCTGCGTG 61.269 61.111 0.00 0.00 0.00 5.34
174 175 3.269347 GTCGTGGTTGTGCTGCGT 61.269 61.111 0.00 0.00 0.00 5.24
175 176 4.012895 GGTCGTGGTTGTGCTGCG 62.013 66.667 0.00 0.00 0.00 5.18
176 177 2.591715 AGGTCGTGGTTGTGCTGC 60.592 61.111 0.00 0.00 0.00 5.25
177 178 0.603707 ATGAGGTCGTGGTTGTGCTG 60.604 55.000 0.00 0.00 0.00 4.41
178 179 0.320771 GATGAGGTCGTGGTTGTGCT 60.321 55.000 0.00 0.00 0.00 4.40
179 180 1.298859 GGATGAGGTCGTGGTTGTGC 61.299 60.000 0.00 0.00 0.00 4.57
180 181 0.321671 AGGATGAGGTCGTGGTTGTG 59.678 55.000 0.00 0.00 0.00 3.33
181 182 1.056660 AAGGATGAGGTCGTGGTTGT 58.943 50.000 0.00 0.00 0.00 3.32
182 183 1.442769 CAAGGATGAGGTCGTGGTTG 58.557 55.000 0.00 0.00 0.00 3.77
183 184 0.324943 CCAAGGATGAGGTCGTGGTT 59.675 55.000 0.00 0.00 31.35 3.67
184 185 1.983224 CCAAGGATGAGGTCGTGGT 59.017 57.895 0.00 0.00 31.35 4.16
185 186 1.450312 GCCAAGGATGAGGTCGTGG 60.450 63.158 0.00 0.00 36.34 4.94
186 187 0.460987 GAGCCAAGGATGAGGTCGTG 60.461 60.000 0.00 0.00 0.00 4.35
187 188 1.617947 GGAGCCAAGGATGAGGTCGT 61.618 60.000 0.00 0.00 0.00 4.34
188 189 1.144936 GGAGCCAAGGATGAGGTCG 59.855 63.158 0.00 0.00 0.00 4.79
189 190 0.985490 AGGGAGCCAAGGATGAGGTC 60.985 60.000 0.00 0.00 0.00 3.85
190 191 0.985490 GAGGGAGCCAAGGATGAGGT 60.985 60.000 0.00 0.00 0.00 3.85
191 192 0.984961 TGAGGGAGCCAAGGATGAGG 60.985 60.000 0.00 0.00 0.00 3.86
192 193 0.914644 TTGAGGGAGCCAAGGATGAG 59.085 55.000 0.00 0.00 0.00 2.90
193 194 0.620556 GTTGAGGGAGCCAAGGATGA 59.379 55.000 0.00 0.00 0.00 2.92
194 195 0.745845 CGTTGAGGGAGCCAAGGATG 60.746 60.000 0.00 0.00 32.86 3.51
195 196 1.201429 ACGTTGAGGGAGCCAAGGAT 61.201 55.000 0.00 0.00 34.58 3.24
196 197 1.827399 GACGTTGAGGGAGCCAAGGA 61.827 60.000 0.00 0.00 34.58 3.36
197 198 1.376037 GACGTTGAGGGAGCCAAGG 60.376 63.158 0.00 0.00 36.02 3.61
198 199 0.390472 GAGACGTTGAGGGAGCCAAG 60.390 60.000 0.00 0.00 0.00 3.61
199 200 1.671742 GAGACGTTGAGGGAGCCAA 59.328 57.895 0.00 0.00 0.00 4.52
200 201 2.283529 GGAGACGTTGAGGGAGCCA 61.284 63.158 0.00 0.00 0.00 4.75
201 202 1.827399 TTGGAGACGTTGAGGGAGCC 61.827 60.000 0.00 0.00 0.00 4.70
202 203 0.390472 CTTGGAGACGTTGAGGGAGC 60.390 60.000 0.00 0.00 0.00 4.70
203 204 0.390472 GCTTGGAGACGTTGAGGGAG 60.390 60.000 0.00 0.00 0.00 4.30
204 205 1.671742 GCTTGGAGACGTTGAGGGA 59.328 57.895 0.00 0.00 0.00 4.20
205 206 1.376037 GGCTTGGAGACGTTGAGGG 60.376 63.158 0.00 0.00 0.00 4.30
206 207 1.376037 GGGCTTGGAGACGTTGAGG 60.376 63.158 0.00 0.00 0.00 3.86
207 208 0.250295 TTGGGCTTGGAGACGTTGAG 60.250 55.000 0.00 0.00 0.00 3.02
208 209 0.534203 GTTGGGCTTGGAGACGTTGA 60.534 55.000 0.00 0.00 0.00 3.18
209 210 0.535102 AGTTGGGCTTGGAGACGTTG 60.535 55.000 0.00 0.00 0.00 4.10
210 211 0.250338 GAGTTGGGCTTGGAGACGTT 60.250 55.000 0.00 0.00 0.00 3.99
211 212 1.122019 AGAGTTGGGCTTGGAGACGT 61.122 55.000 0.00 0.00 0.00 4.34
212 213 0.390472 GAGAGTTGGGCTTGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
213 214 0.687354 TGAGAGTTGGGCTTGGAGAC 59.313 55.000 0.00 0.00 0.00 3.36
214 215 0.979665 CTGAGAGTTGGGCTTGGAGA 59.020 55.000 0.00 0.00 0.00 3.71
215 216 0.035630 CCTGAGAGTTGGGCTTGGAG 60.036 60.000 0.00 0.00 0.00 3.86
216 217 0.473694 TCCTGAGAGTTGGGCTTGGA 60.474 55.000 0.00 0.00 0.00 3.53
217 218 0.322008 GTCCTGAGAGTTGGGCTTGG 60.322 60.000 0.00 0.00 0.00 3.61
218 219 0.671781 CGTCCTGAGAGTTGGGCTTG 60.672 60.000 0.00 0.00 0.00 4.01
219 220 1.674057 CGTCCTGAGAGTTGGGCTT 59.326 57.895 0.00 0.00 0.00 4.35
220 221 2.286523 CCGTCCTGAGAGTTGGGCT 61.287 63.158 0.00 0.00 0.00 5.19
221 222 1.827399 TTCCGTCCTGAGAGTTGGGC 61.827 60.000 0.00 0.00 0.00 5.36
222 223 0.905357 ATTCCGTCCTGAGAGTTGGG 59.095 55.000 0.00 0.00 0.00 4.12
223 224 2.770164 AATTCCGTCCTGAGAGTTGG 57.230 50.000 0.00 0.00 0.00 3.77
224 225 3.190874 GCTAATTCCGTCCTGAGAGTTG 58.809 50.000 0.00 0.00 0.00 3.16
225 226 2.832129 TGCTAATTCCGTCCTGAGAGTT 59.168 45.455 0.00 0.00 0.00 3.01
226 227 2.428890 CTGCTAATTCCGTCCTGAGAGT 59.571 50.000 0.00 0.00 0.00 3.24
227 228 2.801342 GCTGCTAATTCCGTCCTGAGAG 60.801 54.545 0.00 0.00 0.00 3.20
228 229 1.137086 GCTGCTAATTCCGTCCTGAGA 59.863 52.381 0.00 0.00 0.00 3.27
229 230 1.576356 GCTGCTAATTCCGTCCTGAG 58.424 55.000 0.00 0.00 0.00 3.35
230 231 0.178068 GGCTGCTAATTCCGTCCTGA 59.822 55.000 0.00 0.00 0.00 3.86
231 232 0.179000 AGGCTGCTAATTCCGTCCTG 59.821 55.000 0.00 0.00 0.00 3.86
232 233 0.466124 GAGGCTGCTAATTCCGTCCT 59.534 55.000 0.00 0.00 0.00 3.85
233 234 0.876342 CGAGGCTGCTAATTCCGTCC 60.876 60.000 0.00 0.00 0.00 4.79
234 235 0.876342 CCGAGGCTGCTAATTCCGTC 60.876 60.000 0.00 0.00 0.00 4.79
235 236 1.144057 CCGAGGCTGCTAATTCCGT 59.856 57.895 0.00 0.00 0.00 4.69
236 237 0.598680 CTCCGAGGCTGCTAATTCCG 60.599 60.000 0.00 0.00 0.00 4.30
237 238 0.250081 CCTCCGAGGCTGCTAATTCC 60.250 60.000 0.18 0.00 0.00 3.01
238 239 0.250081 CCCTCCGAGGCTGCTAATTC 60.250 60.000 9.17 0.00 32.73 2.17
239 240 1.700042 CCCCTCCGAGGCTGCTAATT 61.700 60.000 9.17 0.00 32.73 1.40
240 241 2.143419 CCCCTCCGAGGCTGCTAAT 61.143 63.158 9.17 0.00 32.73 1.73
241 242 2.764128 CCCCTCCGAGGCTGCTAA 60.764 66.667 9.17 0.00 32.73 3.09
242 243 4.075793 ACCCCTCCGAGGCTGCTA 62.076 66.667 9.17 0.00 32.73 3.49
248 249 2.442272 ATGTCGACCCCTCCGAGG 60.442 66.667 14.12 7.56 36.66 4.63
249 250 2.786495 CCATGTCGACCCCTCCGAG 61.786 68.421 14.12 0.00 36.66 4.63
250 251 2.758327 CCATGTCGACCCCTCCGA 60.758 66.667 14.12 0.00 0.00 4.55
251 252 3.075005 ACCATGTCGACCCCTCCG 61.075 66.667 14.12 0.00 0.00 4.63
252 253 2.240162 GACACCATGTCGACCCCTCC 62.240 65.000 14.12 0.00 37.67 4.30
253 254 1.218316 GACACCATGTCGACCCCTC 59.782 63.158 14.12 0.00 37.67 4.30
254 255 3.388841 GACACCATGTCGACCCCT 58.611 61.111 14.12 0.00 37.67 4.79
261 262 0.974010 TCCGGTAGGGACACCATGTC 60.974 60.000 0.00 0.10 46.23 3.06
262 263 1.079621 TCCGGTAGGGACACCATGT 59.920 57.895 0.00 0.00 40.94 3.21
263 264 4.043859 TCCGGTAGGGACACCATG 57.956 61.111 0.00 0.00 40.94 3.66
296 297 3.382832 AGGTCCTTGCGGTCCTCG 61.383 66.667 0.00 0.00 44.24 4.63
319 320 3.418744 GAGAAGGACTCGGCGAGCC 62.419 68.421 34.76 32.13 35.84 4.70
320 321 2.103340 GAGAAGGACTCGGCGAGC 59.897 66.667 34.76 25.82 35.84 5.03
327 328 1.407258 CATGACCTCCGAGAAGGACTC 59.593 57.143 0.00 0.00 45.98 3.36
328 329 1.479709 CATGACCTCCGAGAAGGACT 58.520 55.000 0.00 0.00 45.98 3.85
329 330 0.179097 GCATGACCTCCGAGAAGGAC 60.179 60.000 0.00 0.79 45.98 3.85
331 332 1.144936 GGCATGACCTCCGAGAAGG 59.855 63.158 0.00 0.00 42.55 3.46
332 333 1.144936 GGGCATGACCTCCGAGAAG 59.855 63.158 11.56 0.00 39.10 2.85
333 334 2.721167 CGGGCATGACCTCCGAGAA 61.721 63.158 17.64 0.00 45.96 2.87
334 335 3.147595 CGGGCATGACCTCCGAGA 61.148 66.667 17.64 0.00 45.96 4.04
335 336 4.227134 CCGGGCATGACCTCCGAG 62.227 72.222 17.64 0.00 45.96 4.63
339 340 4.899239 CTCGCCGGGCATGACCTC 62.899 72.222 17.64 6.32 39.10 3.85
348 349 4.560856 CTTCTCGAGCTCGCCGGG 62.561 72.222 30.97 19.01 39.60 5.73
366 367 2.169789 CGGACAGCCTTGCGATCAG 61.170 63.158 0.00 0.00 0.00 2.90
367 368 2.125552 CGGACAGCCTTGCGATCA 60.126 61.111 0.00 0.00 0.00 2.92
368 369 0.811616 ATTCGGACAGCCTTGCGATC 60.812 55.000 0.00 0.00 0.00 3.69
369 370 0.811616 GATTCGGACAGCCTTGCGAT 60.812 55.000 0.00 0.00 0.00 4.58
370 371 1.447838 GATTCGGACAGCCTTGCGA 60.448 57.895 0.00 0.00 0.00 5.10
371 372 2.464459 GGATTCGGACAGCCTTGCG 61.464 63.158 0.00 0.00 0.00 4.85
372 373 2.464459 CGGATTCGGACAGCCTTGC 61.464 63.158 0.00 0.00 0.00 4.01
373 374 3.799753 CGGATTCGGACAGCCTTG 58.200 61.111 0.00 0.00 0.00 3.61
383 384 0.101040 AATTGCATGCACCGGATTCG 59.899 50.000 22.58 0.00 0.00 3.34
384 385 2.098934 TGTAATTGCATGCACCGGATTC 59.901 45.455 22.58 11.45 0.00 2.52
385 386 2.098614 TGTAATTGCATGCACCGGATT 58.901 42.857 22.58 19.19 0.00 3.01
386 387 1.761449 TGTAATTGCATGCACCGGAT 58.239 45.000 22.58 8.52 0.00 4.18
387 388 1.472082 CTTGTAATTGCATGCACCGGA 59.528 47.619 22.58 5.97 0.00 5.14
388 389 1.912001 CTTGTAATTGCATGCACCGG 58.088 50.000 22.58 0.00 0.00 5.28
389 390 1.270971 GCTTGTAATTGCATGCACCG 58.729 50.000 22.58 4.86 38.76 4.94
390 391 1.135431 TCGCTTGTAATTGCATGCACC 60.135 47.619 22.58 9.33 38.82 5.01
391 392 2.179589 CTCGCTTGTAATTGCATGCAC 58.820 47.619 22.58 9.70 38.82 4.57
392 393 1.811965 ACTCGCTTGTAATTGCATGCA 59.188 42.857 26.11 18.46 38.82 3.96
393 394 2.549633 ACTCGCTTGTAATTGCATGC 57.450 45.000 19.97 19.97 36.54 4.06
394 395 7.696035 TGTAATTAACTCGCTTGTAATTGCATG 59.304 33.333 0.00 0.80 31.36 4.06
395 396 7.696453 GTGTAATTAACTCGCTTGTAATTGCAT 59.304 33.333 0.00 0.00 36.02 3.96
396 397 7.018826 GTGTAATTAACTCGCTTGTAATTGCA 58.981 34.615 0.00 0.00 32.96 4.08
397 398 6.192137 CGTGTAATTAACTCGCTTGTAATTGC 59.808 38.462 0.00 0.00 38.15 3.56
398 399 7.449827 TCGTGTAATTAACTCGCTTGTAATTG 58.550 34.615 0.00 0.00 43.12 2.32
399 400 7.585286 TCGTGTAATTAACTCGCTTGTAATT 57.415 32.000 0.00 0.00 43.12 1.40
400 401 7.766219 ATCGTGTAATTAACTCGCTTGTAAT 57.234 32.000 0.00 0.00 43.12 1.89
401 402 7.970061 ACTATCGTGTAATTAACTCGCTTGTAA 59.030 33.333 0.00 0.00 43.12 2.41
402 403 7.475015 ACTATCGTGTAATTAACTCGCTTGTA 58.525 34.615 0.00 0.00 43.12 2.41
403 404 6.327934 ACTATCGTGTAATTAACTCGCTTGT 58.672 36.000 0.00 0.00 43.12 3.16
404 405 6.807708 ACTATCGTGTAATTAACTCGCTTG 57.192 37.500 0.00 0.00 43.12 4.01
1172 1174 6.250344 ACTCATGTTCACTCATGTTCAATG 57.750 37.500 6.57 0.00 43.70 2.82
1803 1806 7.618019 TGTAAGGTTATCCTGCAGATATCTT 57.382 36.000 17.39 16.75 44.35 2.40
2668 2916 5.318630 GGAACCAACTTAACCTAACCATGA 58.681 41.667 0.00 0.00 0.00 3.07
2669 2917 4.155280 CGGAACCAACTTAACCTAACCATG 59.845 45.833 0.00 0.00 0.00 3.66
2670 2918 4.202493 ACGGAACCAACTTAACCTAACCAT 60.202 41.667 0.00 0.00 0.00 3.55
2671 2919 3.136260 ACGGAACCAACTTAACCTAACCA 59.864 43.478 0.00 0.00 0.00 3.67
2672 2920 3.743521 ACGGAACCAACTTAACCTAACC 58.256 45.455 0.00 0.00 0.00 2.85
2673 2921 3.429881 CGACGGAACCAACTTAACCTAAC 59.570 47.826 0.00 0.00 0.00 2.34
2674 2922 3.320541 TCGACGGAACCAACTTAACCTAA 59.679 43.478 0.00 0.00 0.00 2.69
2675 2923 2.890311 TCGACGGAACCAACTTAACCTA 59.110 45.455 0.00 0.00 0.00 3.08
2676 2924 1.688197 TCGACGGAACCAACTTAACCT 59.312 47.619 0.00 0.00 0.00 3.50
2677 2925 1.794701 GTCGACGGAACCAACTTAACC 59.205 52.381 0.00 0.00 0.00 2.85
2678 2926 1.794701 GGTCGACGGAACCAACTTAAC 59.205 52.381 9.92 0.00 0.00 2.01
2679 2927 2.153366 GGTCGACGGAACCAACTTAA 57.847 50.000 9.92 0.00 0.00 1.85
2680 2928 3.892200 GGTCGACGGAACCAACTTA 57.108 52.632 9.92 0.00 0.00 2.24
2681 2929 4.764896 GGTCGACGGAACCAACTT 57.235 55.556 9.92 0.00 0.00 2.66
2687 2935 2.493501 GCTAGGGGTCGACGGAAC 59.506 66.667 9.92 0.00 0.00 3.62
2688 2936 2.757099 GGCTAGGGGTCGACGGAA 60.757 66.667 9.92 0.00 0.00 4.30
2689 2937 4.051167 TGGCTAGGGGTCGACGGA 62.051 66.667 9.92 0.00 0.00 4.69
2690 2938 3.834799 GTGGCTAGGGGTCGACGG 61.835 72.222 9.92 0.00 0.00 4.79
2691 2939 3.834799 GGTGGCTAGGGGTCGACG 61.835 72.222 9.92 0.00 0.00 5.12
2692 2940 0.757935 TATGGTGGCTAGGGGTCGAC 60.758 60.000 7.13 7.13 0.00 4.20
2693 2941 0.031917 TTATGGTGGCTAGGGGTCGA 60.032 55.000 0.00 0.00 0.00 4.20
2694 2942 0.834612 TTTATGGTGGCTAGGGGTCG 59.165 55.000 0.00 0.00 0.00 4.79
2695 2943 1.133884 GGTTTATGGTGGCTAGGGGTC 60.134 57.143 0.00 0.00 0.00 4.46
2696 2944 0.924090 GGTTTATGGTGGCTAGGGGT 59.076 55.000 0.00 0.00 0.00 4.95
2697 2945 0.923358 TGGTTTATGGTGGCTAGGGG 59.077 55.000 0.00 0.00 0.00 4.79
2698 2946 4.447138 TTATGGTTTATGGTGGCTAGGG 57.553 45.455 0.00 0.00 0.00 3.53
2699 2947 4.766891 CCATTATGGTTTATGGTGGCTAGG 59.233 45.833 2.48 0.00 37.19 3.02
2700 2948 5.964958 CCATTATGGTTTATGGTGGCTAG 57.035 43.478 2.48 0.00 37.19 3.42
2714 2962 5.445964 ACCACCTTAAGCTAACCATTATGG 58.554 41.667 10.08 10.08 45.02 2.74
2715 2963 6.039382 GGAACCACCTTAAGCTAACCATTATG 59.961 42.308 0.00 0.00 35.41 1.90
2716 2964 6.127101 GGAACCACCTTAAGCTAACCATTAT 58.873 40.000 0.00 0.00 35.41 1.28
2717 2965 5.503002 GGAACCACCTTAAGCTAACCATTA 58.497 41.667 0.00 0.00 35.41 1.90
2718 2966 4.341487 GGAACCACCTTAAGCTAACCATT 58.659 43.478 0.00 0.00 35.41 3.16
2719 2967 3.621461 CGGAACCACCTTAAGCTAACCAT 60.621 47.826 0.00 0.00 36.31 3.55
2720 2968 2.289819 CGGAACCACCTTAAGCTAACCA 60.290 50.000 0.00 0.00 36.31 3.67
2721 2969 2.289882 ACGGAACCACCTTAAGCTAACC 60.290 50.000 0.00 0.00 36.31 2.85
2722 2970 2.998670 GACGGAACCACCTTAAGCTAAC 59.001 50.000 0.00 0.00 36.31 2.34
2723 2971 2.353011 CGACGGAACCACCTTAAGCTAA 60.353 50.000 0.00 0.00 36.31 3.09
2724 2972 1.203052 CGACGGAACCACCTTAAGCTA 59.797 52.381 0.00 0.00 36.31 3.32
2725 2973 0.037605 CGACGGAACCACCTTAAGCT 60.038 55.000 0.00 0.00 36.31 3.74
2726 2974 0.037975 TCGACGGAACCACCTTAAGC 60.038 55.000 0.00 0.00 36.31 3.09
2727 2975 1.670967 GGTCGACGGAACCACCTTAAG 60.671 57.143 9.92 0.00 36.31 1.85
2728 2976 0.318120 GGTCGACGGAACCACCTTAA 59.682 55.000 9.92 0.00 36.31 1.85
2729 2977 1.966762 GGTCGACGGAACCACCTTA 59.033 57.895 9.92 0.00 36.31 2.69
2730 2978 2.739132 GGTCGACGGAACCACCTT 59.261 61.111 9.92 0.00 36.31 3.50
2736 2984 4.790861 GCTCGGGGTCGACGGAAC 62.791 72.222 9.92 0.00 40.88 3.62
2744 2992 2.946346 TTTACGGTGGCTCGGGGTC 61.946 63.158 5.89 0.00 0.00 4.46
2745 2993 2.924101 TTTACGGTGGCTCGGGGT 60.924 61.111 5.89 0.00 0.00 4.95
2746 2994 2.435410 GTTTACGGTGGCTCGGGG 60.435 66.667 5.89 0.00 0.00 5.73
2747 2995 2.435410 GGTTTACGGTGGCTCGGG 60.435 66.667 5.89 0.00 0.00 5.14
2748 2996 1.078708 ATGGTTTACGGTGGCTCGG 60.079 57.895 5.89 0.00 0.00 4.63
2749 2997 0.390603 TGATGGTTTACGGTGGCTCG 60.391 55.000 0.00 0.00 0.00 5.03
2750 2998 1.670811 CATGATGGTTTACGGTGGCTC 59.329 52.381 0.00 0.00 0.00 4.70
2751 2999 1.681780 CCATGATGGTTTACGGTGGCT 60.682 52.381 2.54 0.00 31.35 4.75
2752 3000 0.738389 CCATGATGGTTTACGGTGGC 59.262 55.000 2.54 0.00 31.35 5.01
2763 3011 5.261216 ACCAACTTAACCTAACCATGATGG 58.739 41.667 10.53 10.53 45.02 3.51
2764 3012 6.127730 GGAACCAACTTAACCTAACCATGATG 60.128 42.308 0.00 0.00 0.00 3.07
2765 3013 5.949952 GGAACCAACTTAACCTAACCATGAT 59.050 40.000 0.00 0.00 0.00 2.45
2766 3014 5.318630 GGAACCAACTTAACCTAACCATGA 58.681 41.667 0.00 0.00 0.00 3.07
2767 3015 4.155280 CGGAACCAACTTAACCTAACCATG 59.845 45.833 0.00 0.00 0.00 3.66
2768 3016 4.202493 ACGGAACCAACTTAACCTAACCAT 60.202 41.667 0.00 0.00 0.00 3.55
2769 3017 3.136260 ACGGAACCAACTTAACCTAACCA 59.864 43.478 0.00 0.00 0.00 3.67
2770 3018 3.743521 ACGGAACCAACTTAACCTAACC 58.256 45.455 0.00 0.00 0.00 2.85
2771 3019 3.429881 CGACGGAACCAACTTAACCTAAC 59.570 47.826 0.00 0.00 0.00 2.34
2772 3020 3.320541 TCGACGGAACCAACTTAACCTAA 59.679 43.478 0.00 0.00 0.00 2.69
2773 3021 2.890311 TCGACGGAACCAACTTAACCTA 59.110 45.455 0.00 0.00 0.00 3.08
2774 3022 1.688197 TCGACGGAACCAACTTAACCT 59.312 47.619 0.00 0.00 0.00 3.50
2775 3023 1.794701 GTCGACGGAACCAACTTAACC 59.205 52.381 0.00 0.00 0.00 2.85
2776 3024 1.794701 GGTCGACGGAACCAACTTAAC 59.205 52.381 9.92 0.00 0.00 2.01
2777 3025 2.153366 GGTCGACGGAACCAACTTAA 57.847 50.000 9.92 0.00 0.00 1.85
2778 3026 3.892200 GGTCGACGGAACCAACTTA 57.108 52.632 9.92 0.00 0.00 2.24
2779 3027 4.764896 GGTCGACGGAACCAACTT 57.235 55.556 9.92 0.00 0.00 2.66
2785 3033 4.790861 GCTCGGGGTCGACGGAAC 62.791 72.222 9.92 0.00 40.88 3.62
2791 3039 3.665515 TATGGTGGCTCGGGGTCGA 62.666 63.158 0.00 0.00 43.86 4.20
2792 3040 2.246761 TTTATGGTGGCTCGGGGTCG 62.247 60.000 0.00 0.00 37.82 4.79
2793 3041 0.746923 GTTTATGGTGGCTCGGGGTC 60.747 60.000 0.00 0.00 0.00 4.46
2794 3042 1.301954 GTTTATGGTGGCTCGGGGT 59.698 57.895 0.00 0.00 0.00 4.95
2795 3043 1.453197 GGTTTATGGTGGCTCGGGG 60.453 63.158 0.00 0.00 0.00 5.73
2796 3044 0.106719 ATGGTTTATGGTGGCTCGGG 60.107 55.000 0.00 0.00 0.00 5.14
2797 3045 1.308998 GATGGTTTATGGTGGCTCGG 58.691 55.000 0.00 0.00 0.00 4.63
2798 3046 2.036958 TGATGGTTTATGGTGGCTCG 57.963 50.000 0.00 0.00 0.00 5.03
2799 3047 2.624838 CCATGATGGTTTATGGTGGCTC 59.375 50.000 2.54 0.00 39.18 4.70
2800 3048 2.669781 CCATGATGGTTTATGGTGGCT 58.330 47.619 2.54 0.00 39.18 4.75
2812 3060 5.261216 ACCAACTTAACCTAACCATGATGG 58.739 41.667 10.53 10.53 45.02 3.51
2813 3061 6.127730 GGAACCAACTTAACCTAACCATGATG 60.128 42.308 0.00 0.00 0.00 3.07
2814 3062 5.949952 GGAACCAACTTAACCTAACCATGAT 59.050 40.000 0.00 0.00 0.00 2.45
2815 3063 5.318630 GGAACCAACTTAACCTAACCATGA 58.681 41.667 0.00 0.00 0.00 3.07
2816 3064 4.155280 CGGAACCAACTTAACCTAACCATG 59.845 45.833 0.00 0.00 0.00 3.66
2817 3065 4.202493 ACGGAACCAACTTAACCTAACCAT 60.202 41.667 0.00 0.00 0.00 3.55
2818 3066 3.136260 ACGGAACCAACTTAACCTAACCA 59.864 43.478 0.00 0.00 0.00 3.67
2819 3067 3.743521 ACGGAACCAACTTAACCTAACC 58.256 45.455 0.00 0.00 0.00 2.85
2820 3068 3.429881 CGACGGAACCAACTTAACCTAAC 59.570 47.826 0.00 0.00 0.00 2.34
2821 3069 3.320541 TCGACGGAACCAACTTAACCTAA 59.679 43.478 0.00 0.00 0.00 2.69
2822 3070 2.890311 TCGACGGAACCAACTTAACCTA 59.110 45.455 0.00 0.00 0.00 3.08
2823 3071 1.688197 TCGACGGAACCAACTTAACCT 59.312 47.619 0.00 0.00 0.00 3.50
2824 3072 1.794701 GTCGACGGAACCAACTTAACC 59.205 52.381 0.00 0.00 0.00 2.85
2825 3073 1.794701 GGTCGACGGAACCAACTTAAC 59.205 52.381 9.92 0.00 0.00 2.01
2826 3074 2.153366 GGTCGACGGAACCAACTTAA 57.847 50.000 9.92 0.00 0.00 1.85
2827 3075 3.892200 GGTCGACGGAACCAACTTA 57.108 52.632 9.92 0.00 0.00 2.24
2828 3076 4.764896 GGTCGACGGAACCAACTT 57.235 55.556 9.92 0.00 0.00 2.66
2834 3082 4.790861 GCTCGGGGTCGACGGAAC 62.791 72.222 9.92 0.00 40.88 3.62
2840 3088 3.665515 TATGGTGGCTCGGGGTCGA 62.666 63.158 0.00 0.00 43.86 4.20
2841 3089 2.246761 TTTATGGTGGCTCGGGGTCG 62.247 60.000 0.00 0.00 37.82 4.79
2842 3090 0.746923 GTTTATGGTGGCTCGGGGTC 60.747 60.000 0.00 0.00 0.00 4.46
2843 3091 1.301954 GTTTATGGTGGCTCGGGGT 59.698 57.895 0.00 0.00 0.00 4.95
2844 3092 1.453197 GGTTTATGGTGGCTCGGGG 60.453 63.158 0.00 0.00 0.00 5.73
2845 3093 0.106719 ATGGTTTATGGTGGCTCGGG 60.107 55.000 0.00 0.00 0.00 5.14
2846 3094 2.631160 TATGGTTTATGGTGGCTCGG 57.369 50.000 0.00 0.00 0.00 4.63
2847 3095 3.253188 CCATTATGGTTTATGGTGGCTCG 59.747 47.826 2.48 0.00 37.19 5.03
2848 3096 4.853924 CCATTATGGTTTATGGTGGCTC 57.146 45.455 2.48 0.00 37.19 4.70
2861 3109 7.230712 GGAACCACCTTAATCTAACCATTATGG 59.769 40.741 10.08 10.08 38.59 2.74
2862 3110 7.041372 CGGAACCACCTTAATCTAACCATTATG 60.041 40.741 0.00 0.00 36.31 1.90
2863 3111 6.996282 CGGAACCACCTTAATCTAACCATTAT 59.004 38.462 0.00 0.00 36.31 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.