Multiple sequence alignment - TraesCS3B01G066200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G066200 chr3B 100.000 5675 0 0 1 5675 39465119 39459445 0.000000e+00 10480.0
1 TraesCS3B01G066200 chr3B 94.841 252 12 1 5 256 377115153 377115403 5.330000e-105 392.0
2 TraesCS3B01G066200 chr3B 97.222 36 1 0 2819 2854 556008392 556008427 1.710000e-05 62.1
3 TraesCS3B01G066200 chr3A 92.381 3242 189 30 1872 5082 31949224 31952438 0.000000e+00 4566.0
4 TraesCS3B01G066200 chr3A 88.051 1021 71 24 794 1801 31948203 31949185 0.000000e+00 1162.0
5 TraesCS3B01G066200 chr3A 92.282 596 40 6 5082 5675 31952407 31952998 0.000000e+00 841.0
6 TraesCS3B01G066200 chr3A 94.466 253 13 1 5 256 319962345 319962597 6.900000e-104 388.0
7 TraesCS3B01G066200 chr3D 93.672 2639 130 25 3056 5675 22282893 22280273 0.000000e+00 3914.0
8 TraesCS3B01G066200 chr3D 90.763 2306 139 25 799 3073 22285168 22282906 0.000000e+00 3011.0
9 TraesCS3B01G066200 chr3D 95.238 252 12 0 5 256 255424425 255424676 3.190000e-107 399.0
10 TraesCS3B01G066200 chr3D 100.000 33 0 0 2822 2854 425461645 425461613 1.710000e-05 62.1
11 TraesCS3B01G066200 chr4D 85.631 515 24 20 794 1288 506958247 506958731 3.950000e-136 496.0
12 TraesCS3B01G066200 chr6D 94.422 251 12 2 6 256 26033683 26033931 8.920000e-103 385.0
13 TraesCS3B01G066200 chr6D 92.803 264 19 0 5 268 327021902 327022165 3.210000e-102 383.0
14 TraesCS3B01G066200 chr6D 93.359 256 15 2 4 259 3744216 3743963 1.490000e-100 377.0
15 TraesCS3B01G066200 chr5D 92.537 268 17 3 5 269 132472886 132472619 1.150000e-101 381.0
16 TraesCS3B01G066200 chr1B 91.007 278 25 0 5 282 617090699 617090422 5.370000e-100 375.0
17 TraesCS3B01G066200 chr2A 90.681 279 17 7 5 281 122147184 122146913 4.180000e-96 363.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G066200 chr3B 39459445 39465119 5674 True 10480.000000 10480 100.000000 1 5675 1 chr3B.!!$R1 5674
1 TraesCS3B01G066200 chr3A 31948203 31952998 4795 False 2189.666667 4566 90.904667 794 5675 3 chr3A.!!$F2 4881
2 TraesCS3B01G066200 chr3D 22280273 22285168 4895 True 3462.500000 3914 92.217500 799 5675 2 chr3D.!!$R2 4876

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.107654 CTTCCCACCATCCCTTCGTC 60.108 60.000 0.00 0.00 0.00 4.20 F
545 546 0.109226 GTCGAACTCTGGCGCTAAGT 60.109 55.000 7.64 5.65 0.00 2.24 F
1485 1509 0.104620 GTTGCCTCCCCTATCCCCTA 60.105 60.000 0.00 0.00 0.00 3.53 F
1490 1514 0.900647 CTCCCCTATCCCCTAGCGTG 60.901 65.000 0.00 0.00 0.00 5.34 F
1524 1548 1.002033 GCTGCTCCATTCCGCATTTAG 60.002 52.381 0.00 0.00 35.32 1.85 F
2612 2657 1.247567 CTACCACTGGGCTTTGTTGG 58.752 55.000 0.00 0.00 37.90 3.77 F
3041 3090 2.098117 AGATTGCTGCGCTAAAATGGAC 59.902 45.455 9.73 0.00 0.00 4.02 F
4048 4135 1.532868 CACTTGACTCCCTTCAAAGCG 59.467 52.381 0.00 0.00 35.07 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1445 1469 0.676151 GCCCCTGCTCTGAACTGAAG 60.676 60.000 0.00 0.0 33.53 3.02 R
2066 2109 0.036952 AAGACACCTGTCCGCAGATG 60.037 55.000 1.66 0.0 45.85 2.90 R
2329 2374 1.278985 TCACGCACCATGGAGATCTTT 59.721 47.619 21.47 0.0 0.00 2.52 R
2865 2914 1.352017 ACTCCATCATTGGCAGTGTCA 59.648 47.619 9.95 0.0 43.29 3.58 R
3081 3161 1.577468 TGTTCACCTAACACAGCACG 58.423 50.000 0.00 0.0 43.22 5.34 R
3734 3816 0.036448 ATGCAGAGCAGAGCACACTT 59.964 50.000 0.00 0.0 43.65 3.16 R
4473 4569 0.178068 CCGTGGGATCGACCTCATTT 59.822 55.000 0.00 0.0 38.98 2.32 R
5408 5541 1.015868 TTCCAACCGAACGACAAACC 58.984 50.000 0.00 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.413783 TTTTATTTCACCTTTCTTCCCACC 57.586 37.500 0.00 0.00 0.00 4.61
24 25 3.611025 ATTTCACCTTTCTTCCCACCA 57.389 42.857 0.00 0.00 0.00 4.17
25 26 3.611025 TTTCACCTTTCTTCCCACCAT 57.389 42.857 0.00 0.00 0.00 3.55
26 27 2.879103 TCACCTTTCTTCCCACCATC 57.121 50.000 0.00 0.00 0.00 3.51
27 28 1.354368 TCACCTTTCTTCCCACCATCC 59.646 52.381 0.00 0.00 0.00 3.51
28 29 0.704664 ACCTTTCTTCCCACCATCCC 59.295 55.000 0.00 0.00 0.00 3.85
29 30 1.002857 CCTTTCTTCCCACCATCCCT 58.997 55.000 0.00 0.00 0.00 4.20
30 31 1.359130 CCTTTCTTCCCACCATCCCTT 59.641 52.381 0.00 0.00 0.00 3.95
31 32 2.621668 CCTTTCTTCCCACCATCCCTTC 60.622 54.545 0.00 0.00 0.00 3.46
32 33 0.618458 TTCTTCCCACCATCCCTTCG 59.382 55.000 0.00 0.00 0.00 3.79
33 34 0.546747 TCTTCCCACCATCCCTTCGT 60.547 55.000 0.00 0.00 0.00 3.85
34 35 0.107654 CTTCCCACCATCCCTTCGTC 60.108 60.000 0.00 0.00 0.00 4.20
35 36 1.559065 TTCCCACCATCCCTTCGTCC 61.559 60.000 0.00 0.00 0.00 4.79
36 37 2.297895 CCCACCATCCCTTCGTCCA 61.298 63.158 0.00 0.00 0.00 4.02
37 38 1.682849 CCACCATCCCTTCGTCCAA 59.317 57.895 0.00 0.00 0.00 3.53
38 39 0.676782 CCACCATCCCTTCGTCCAAC 60.677 60.000 0.00 0.00 0.00 3.77
39 40 0.676782 CACCATCCCTTCGTCCAACC 60.677 60.000 0.00 0.00 0.00 3.77
40 41 0.840722 ACCATCCCTTCGTCCAACCT 60.841 55.000 0.00 0.00 0.00 3.50
41 42 0.328258 CCATCCCTTCGTCCAACCTT 59.672 55.000 0.00 0.00 0.00 3.50
42 43 1.679032 CCATCCCTTCGTCCAACCTTC 60.679 57.143 0.00 0.00 0.00 3.46
43 44 0.618981 ATCCCTTCGTCCAACCTTCC 59.381 55.000 0.00 0.00 0.00 3.46
44 45 0.765135 TCCCTTCGTCCAACCTTCCA 60.765 55.000 0.00 0.00 0.00 3.53
45 46 0.328258 CCCTTCGTCCAACCTTCCAT 59.672 55.000 0.00 0.00 0.00 3.41
46 47 1.453155 CCTTCGTCCAACCTTCCATG 58.547 55.000 0.00 0.00 0.00 3.66
47 48 1.271379 CCTTCGTCCAACCTTCCATGT 60.271 52.381 0.00 0.00 0.00 3.21
48 49 2.027561 CCTTCGTCCAACCTTCCATGTA 60.028 50.000 0.00 0.00 0.00 2.29
49 50 3.370527 CCTTCGTCCAACCTTCCATGTAT 60.371 47.826 0.00 0.00 0.00 2.29
50 51 4.141801 CCTTCGTCCAACCTTCCATGTATA 60.142 45.833 0.00 0.00 0.00 1.47
51 52 5.454755 CCTTCGTCCAACCTTCCATGTATAT 60.455 44.000 0.00 0.00 0.00 0.86
52 53 4.956085 TCGTCCAACCTTCCATGTATATG 58.044 43.478 0.00 0.00 0.00 1.78
53 54 4.651962 TCGTCCAACCTTCCATGTATATGA 59.348 41.667 0.25 0.00 36.36 2.15
54 55 5.306937 TCGTCCAACCTTCCATGTATATGAT 59.693 40.000 0.25 0.00 36.36 2.45
55 56 6.495526 TCGTCCAACCTTCCATGTATATGATA 59.504 38.462 0.25 0.00 36.36 2.15
56 57 7.015779 TCGTCCAACCTTCCATGTATATGATAA 59.984 37.037 0.25 0.00 36.36 1.75
57 58 7.824289 CGTCCAACCTTCCATGTATATGATAAT 59.176 37.037 0.25 0.00 36.36 1.28
58 59 9.520515 GTCCAACCTTCCATGTATATGATAATT 57.479 33.333 0.25 0.00 36.36 1.40
87 88 9.498176 TCACCTTAATTTAGTTACCTTCTCAAC 57.502 33.333 0.00 0.00 0.00 3.18
88 89 8.727910 CACCTTAATTTAGTTACCTTCTCAACC 58.272 37.037 0.00 0.00 0.00 3.77
89 90 8.442374 ACCTTAATTTAGTTACCTTCTCAACCA 58.558 33.333 0.00 0.00 0.00 3.67
90 91 9.292195 CCTTAATTTAGTTACCTTCTCAACCAA 57.708 33.333 0.00 0.00 0.00 3.67
95 96 8.754991 TTTAGTTACCTTCTCAACCAATTTCA 57.245 30.769 0.00 0.00 0.00 2.69
96 97 6.635030 AGTTACCTTCTCAACCAATTTCAC 57.365 37.500 0.00 0.00 0.00 3.18
97 98 6.365520 AGTTACCTTCTCAACCAATTTCACT 58.634 36.000 0.00 0.00 0.00 3.41
98 99 6.833933 AGTTACCTTCTCAACCAATTTCACTT 59.166 34.615 0.00 0.00 0.00 3.16
99 100 7.342026 AGTTACCTTCTCAACCAATTTCACTTT 59.658 33.333 0.00 0.00 0.00 2.66
100 101 8.626526 GTTACCTTCTCAACCAATTTCACTTTA 58.373 33.333 0.00 0.00 0.00 1.85
101 102 7.277174 ACCTTCTCAACCAATTTCACTTTAG 57.723 36.000 0.00 0.00 0.00 1.85
102 103 6.833933 ACCTTCTCAACCAATTTCACTTTAGT 59.166 34.615 0.00 0.00 0.00 2.24
103 104 7.342026 ACCTTCTCAACCAATTTCACTTTAGTT 59.658 33.333 0.00 0.00 0.00 2.24
104 105 8.197439 CCTTCTCAACCAATTTCACTTTAGTTT 58.803 33.333 0.00 0.00 0.00 2.66
107 108 9.403583 TCTCAACCAATTTCACTTTAGTTTACT 57.596 29.630 0.00 0.00 0.00 2.24
112 113 9.411189 ACCAATTTCACTTTAGTTTACTTACCA 57.589 29.630 0.00 0.00 0.00 3.25
119 120 9.895138 TCACTTTAGTTTACTTACCAAACTTCT 57.105 29.630 5.85 0.00 42.18 2.85
147 148 9.621629 ATCAAAATATAAGGTAATTCACGGTCA 57.378 29.630 0.00 0.00 0.00 4.02
148 149 9.104965 TCAAAATATAAGGTAATTCACGGTCAG 57.895 33.333 0.00 0.00 0.00 3.51
149 150 9.104965 CAAAATATAAGGTAATTCACGGTCAGA 57.895 33.333 0.00 0.00 0.00 3.27
150 151 9.675464 AAAATATAAGGTAATTCACGGTCAGAA 57.325 29.630 0.00 0.00 0.00 3.02
151 152 9.847224 AAATATAAGGTAATTCACGGTCAGAAT 57.153 29.630 0.00 0.00 37.30 2.40
152 153 9.847224 AATATAAGGTAATTCACGGTCAGAATT 57.153 29.630 10.22 10.22 45.05 2.17
153 154 9.847224 ATATAAGGTAATTCACGGTCAGAATTT 57.153 29.630 10.52 0.00 41.54 1.82
154 155 5.880054 AGGTAATTCACGGTCAGAATTTG 57.120 39.130 10.52 0.00 41.54 2.32
155 156 5.556915 AGGTAATTCACGGTCAGAATTTGA 58.443 37.500 10.52 0.00 41.54 2.69
156 157 6.180472 AGGTAATTCACGGTCAGAATTTGAT 58.820 36.000 10.52 0.00 41.54 2.57
157 158 6.094048 AGGTAATTCACGGTCAGAATTTGATG 59.906 38.462 10.52 0.00 41.54 3.07
158 159 6.093495 GGTAATTCACGGTCAGAATTTGATGA 59.907 38.462 10.52 0.00 41.54 2.92
159 160 6.573664 AATTCACGGTCAGAATTTGATGAA 57.426 33.333 1.75 0.00 41.54 2.57
160 161 5.356882 TTCACGGTCAGAATTTGATGAAC 57.643 39.130 0.00 0.00 38.29 3.18
161 162 4.384940 TCACGGTCAGAATTTGATGAACA 58.615 39.130 5.49 0.00 38.29 3.18
162 163 5.003160 TCACGGTCAGAATTTGATGAACAT 58.997 37.500 5.49 0.00 38.29 2.71
163 164 5.473162 TCACGGTCAGAATTTGATGAACATT 59.527 36.000 5.49 0.00 38.29 2.71
164 165 6.016360 TCACGGTCAGAATTTGATGAACATTT 60.016 34.615 5.49 0.00 38.29 2.32
165 166 7.174080 TCACGGTCAGAATTTGATGAACATTTA 59.826 33.333 5.49 0.00 38.29 1.40
166 167 7.970061 CACGGTCAGAATTTGATGAACATTTAT 59.030 33.333 5.49 0.00 38.29 1.40
167 168 8.522830 ACGGTCAGAATTTGATGAACATTTATT 58.477 29.630 5.49 0.00 38.29 1.40
168 169 9.357652 CGGTCAGAATTTGATGAACATTTATTT 57.642 29.630 5.49 0.00 38.29 1.40
194 195 8.579850 ACACAATCACATTATTATTGACAGGT 57.420 30.769 0.00 0.00 35.18 4.00
195 196 9.679661 ACACAATCACATTATTATTGACAGGTA 57.320 29.630 0.00 0.00 35.18 3.08
206 207 7.944729 ATTATTGACAGGTAAATCACAAGCT 57.055 32.000 0.00 0.00 0.00 3.74
208 209 8.856153 TTATTGACAGGTAAATCACAAGCTAA 57.144 30.769 0.00 0.00 0.00 3.09
209 210 6.554334 TTGACAGGTAAATCACAAGCTAAC 57.446 37.500 0.00 0.00 0.00 2.34
210 211 4.688879 TGACAGGTAAATCACAAGCTAACG 59.311 41.667 0.00 0.00 0.00 3.18
211 212 4.638304 ACAGGTAAATCACAAGCTAACGT 58.362 39.130 0.00 0.00 0.00 3.99
212 213 5.786311 ACAGGTAAATCACAAGCTAACGTA 58.214 37.500 0.00 0.00 0.00 3.57
213 214 5.636543 ACAGGTAAATCACAAGCTAACGTAC 59.363 40.000 0.00 0.00 0.00 3.67
214 215 5.867716 CAGGTAAATCACAAGCTAACGTACT 59.132 40.000 0.00 0.00 0.00 2.73
215 216 7.031372 CAGGTAAATCACAAGCTAACGTACTA 58.969 38.462 0.00 0.00 0.00 1.82
216 217 7.220300 CAGGTAAATCACAAGCTAACGTACTAG 59.780 40.741 0.00 0.00 0.00 2.57
217 218 7.121759 AGGTAAATCACAAGCTAACGTACTAGA 59.878 37.037 0.00 0.00 0.00 2.43
218 219 7.756722 GGTAAATCACAAGCTAACGTACTAGAA 59.243 37.037 0.00 0.00 0.00 2.10
219 220 9.298774 GTAAATCACAAGCTAACGTACTAGAAT 57.701 33.333 0.00 0.00 0.00 2.40
235 236 9.017669 CGTACTAGAATATTAATATCCCGTTGC 57.982 37.037 8.42 0.00 0.00 4.17
236 237 9.865321 GTACTAGAATATTAATATCCCGTTGCA 57.135 33.333 8.42 0.00 0.00 4.08
238 239 9.216117 ACTAGAATATTAATATCCCGTTGCAAC 57.784 33.333 19.89 19.89 0.00 4.17
248 249 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
249 250 3.600694 TTGCAACGCACGGGCATT 61.601 55.556 11.77 0.00 38.71 3.56
250 251 3.837908 TTGCAACGCACGGGCATTG 62.838 57.895 15.24 15.24 45.48 2.82
251 252 4.341502 GCAACGCACGGGCATTGT 62.342 61.111 20.63 0.74 44.58 2.71
252 253 2.334653 CAACGCACGGGCATTGTT 59.665 55.556 10.90 2.50 38.34 2.83
253 254 1.729131 CAACGCACGGGCATTGTTC 60.729 57.895 10.90 0.00 38.34 3.18
254 255 1.896660 AACGCACGGGCATTGTTCT 60.897 52.632 11.77 0.00 41.24 3.01
255 256 0.604243 AACGCACGGGCATTGTTCTA 60.604 50.000 11.77 0.00 41.24 2.10
256 257 0.604243 ACGCACGGGCATTGTTCTAA 60.604 50.000 11.77 0.00 41.24 2.10
257 258 0.732571 CGCACGGGCATTGTTCTAAT 59.267 50.000 11.77 0.00 41.24 1.73
258 259 1.937223 CGCACGGGCATTGTTCTAATA 59.063 47.619 11.77 0.00 41.24 0.98
259 260 2.032894 CGCACGGGCATTGTTCTAATAG 60.033 50.000 11.77 0.00 41.24 1.73
260 261 3.202906 GCACGGGCATTGTTCTAATAGA 58.797 45.455 3.77 0.00 40.72 1.98
261 262 3.248602 GCACGGGCATTGTTCTAATAGAG 59.751 47.826 3.77 0.00 40.72 2.43
262 263 4.693283 CACGGGCATTGTTCTAATAGAGA 58.307 43.478 0.00 0.00 0.00 3.10
263 264 5.300752 CACGGGCATTGTTCTAATAGAGAT 58.699 41.667 0.00 0.00 32.88 2.75
264 265 6.455647 CACGGGCATTGTTCTAATAGAGATA 58.544 40.000 0.00 0.00 32.88 1.98
265 266 6.929049 CACGGGCATTGTTCTAATAGAGATAA 59.071 38.462 0.00 0.00 32.88 1.75
266 267 7.441157 CACGGGCATTGTTCTAATAGAGATAAA 59.559 37.037 0.00 0.00 32.88 1.40
267 268 7.657761 ACGGGCATTGTTCTAATAGAGATAAAG 59.342 37.037 0.00 0.00 32.88 1.85
268 269 7.872993 CGGGCATTGTTCTAATAGAGATAAAGA 59.127 37.037 0.00 0.00 32.88 2.52
269 270 9.732130 GGGCATTGTTCTAATAGAGATAAAGAT 57.268 33.333 0.00 0.00 32.88 2.40
293 294 9.787532 GATAGAGATAGAGAGTACAAATGATGC 57.212 37.037 0.00 0.00 0.00 3.91
294 295 6.991938 AGAGATAGAGAGTACAAATGATGCC 58.008 40.000 0.00 0.00 0.00 4.40
295 296 6.782000 AGAGATAGAGAGTACAAATGATGCCT 59.218 38.462 0.00 0.00 0.00 4.75
296 297 6.991938 AGATAGAGAGTACAAATGATGCCTC 58.008 40.000 0.00 0.00 32.94 4.70
297 298 4.414337 AGAGAGTACAAATGATGCCTCC 57.586 45.455 0.00 0.00 33.11 4.30
298 299 3.776969 AGAGAGTACAAATGATGCCTCCA 59.223 43.478 0.00 0.00 33.11 3.86
299 300 4.411540 AGAGAGTACAAATGATGCCTCCAT 59.588 41.667 0.00 0.00 33.11 3.41
300 301 4.712476 AGAGTACAAATGATGCCTCCATC 58.288 43.478 0.00 0.00 46.46 3.51
301 302 4.411540 AGAGTACAAATGATGCCTCCATCT 59.588 41.667 0.00 0.00 46.43 2.90
302 303 4.712476 AGTACAAATGATGCCTCCATCTC 58.288 43.478 0.00 0.00 46.43 2.75
303 304 3.947612 ACAAATGATGCCTCCATCTCT 57.052 42.857 5.41 0.00 46.43 3.10
304 305 4.246712 ACAAATGATGCCTCCATCTCTT 57.753 40.909 5.41 0.00 46.43 2.85
305 306 4.205587 ACAAATGATGCCTCCATCTCTTC 58.794 43.478 5.41 0.00 46.43 2.87
306 307 4.079901 ACAAATGATGCCTCCATCTCTTCT 60.080 41.667 5.41 0.00 46.43 2.85
307 308 5.131642 ACAAATGATGCCTCCATCTCTTCTA 59.868 40.000 5.41 0.00 46.43 2.10
308 309 5.901413 AATGATGCCTCCATCTCTTCTAA 57.099 39.130 5.41 0.00 46.43 2.10
309 310 4.952071 TGATGCCTCCATCTCTTCTAAG 57.048 45.455 5.41 0.00 46.43 2.18
310 311 3.645212 TGATGCCTCCATCTCTTCTAAGG 59.355 47.826 5.41 0.00 46.43 2.69
311 312 3.121929 TGCCTCCATCTCTTCTAAGGT 57.878 47.619 0.00 0.00 0.00 3.50
312 313 3.454858 TGCCTCCATCTCTTCTAAGGTT 58.545 45.455 0.00 0.00 0.00 3.50
313 314 3.846588 TGCCTCCATCTCTTCTAAGGTTT 59.153 43.478 0.00 0.00 0.00 3.27
314 315 4.289672 TGCCTCCATCTCTTCTAAGGTTTT 59.710 41.667 0.00 0.00 0.00 2.43
315 316 5.487488 TGCCTCCATCTCTTCTAAGGTTTTA 59.513 40.000 0.00 0.00 0.00 1.52
316 317 6.052360 GCCTCCATCTCTTCTAAGGTTTTAG 58.948 44.000 0.00 0.00 38.09 1.85
317 318 6.352308 GCCTCCATCTCTTCTAAGGTTTTAGT 60.352 42.308 0.00 0.00 37.97 2.24
318 319 7.269316 CCTCCATCTCTTCTAAGGTTTTAGTC 58.731 42.308 0.00 0.00 37.97 2.59
319 320 7.093289 CCTCCATCTCTTCTAAGGTTTTAGTCA 60.093 40.741 0.00 0.00 37.97 3.41
320 321 8.202461 TCCATCTCTTCTAAGGTTTTAGTCAA 57.798 34.615 0.00 0.00 37.97 3.18
321 322 8.095169 TCCATCTCTTCTAAGGTTTTAGTCAAC 58.905 37.037 0.00 0.00 37.97 3.18
322 323 8.097662 CCATCTCTTCTAAGGTTTTAGTCAACT 58.902 37.037 0.00 0.00 37.97 3.16
323 324 9.495572 CATCTCTTCTAAGGTTTTAGTCAACTT 57.504 33.333 0.00 0.00 37.97 2.66
324 325 9.713713 ATCTCTTCTAAGGTTTTAGTCAACTTC 57.286 33.333 0.00 0.00 37.97 3.01
325 326 8.925338 TCTCTTCTAAGGTTTTAGTCAACTTCT 58.075 33.333 0.00 0.00 37.97 2.85
326 327 9.549078 CTCTTCTAAGGTTTTAGTCAACTTCTT 57.451 33.333 0.00 0.00 37.97 2.52
327 328 9.901172 TCTTCTAAGGTTTTAGTCAACTTCTTT 57.099 29.630 0.00 0.00 37.97 2.52
329 330 9.901172 TTCTAAGGTTTTAGTCAACTTCTTTCT 57.099 29.630 0.00 0.00 37.97 2.52
330 331 9.901172 TCTAAGGTTTTAGTCAACTTCTTTCTT 57.099 29.630 0.00 0.00 37.97 2.52
335 336 9.512435 GGTTTTAGTCAACTTCTTTCTTTTACC 57.488 33.333 0.00 0.00 0.00 2.85
405 406 8.940768 ATTTTGTTATTTGTTGCAGTTGTACT 57.059 26.923 0.00 0.00 0.00 2.73
406 407 8.764524 TTTTGTTATTTGTTGCAGTTGTACTT 57.235 26.923 0.00 0.00 0.00 2.24
407 408 8.764524 TTTGTTATTTGTTGCAGTTGTACTTT 57.235 26.923 0.00 0.00 0.00 2.66
408 409 7.748031 TGTTATTTGTTGCAGTTGTACTTTG 57.252 32.000 0.00 0.00 0.00 2.77
409 410 6.254589 TGTTATTTGTTGCAGTTGTACTTTGC 59.745 34.615 9.05 9.05 38.30 3.68
410 411 4.448537 TTTGTTGCAGTTGTACTTTGCT 57.551 36.364 14.66 0.00 38.60 3.91
411 412 4.448537 TTGTTGCAGTTGTACTTTGCTT 57.551 36.364 14.66 0.00 38.60 3.91
412 413 4.448537 TGTTGCAGTTGTACTTTGCTTT 57.551 36.364 14.66 0.00 38.60 3.51
413 414 4.172505 TGTTGCAGTTGTACTTTGCTTTG 58.827 39.130 14.66 0.00 38.60 2.77
414 415 3.435105 TGCAGTTGTACTTTGCTTTGG 57.565 42.857 14.66 0.00 38.60 3.28
415 416 3.020274 TGCAGTTGTACTTTGCTTTGGA 58.980 40.909 14.66 0.00 38.60 3.53
416 417 3.636300 TGCAGTTGTACTTTGCTTTGGAT 59.364 39.130 14.66 0.00 38.60 3.41
417 418 4.099266 TGCAGTTGTACTTTGCTTTGGATT 59.901 37.500 14.66 0.00 38.60 3.01
418 419 5.300539 TGCAGTTGTACTTTGCTTTGGATTA 59.699 36.000 14.66 0.00 38.60 1.75
419 420 6.183360 TGCAGTTGTACTTTGCTTTGGATTAA 60.183 34.615 14.66 0.00 38.60 1.40
420 421 6.699642 GCAGTTGTACTTTGCTTTGGATTAAA 59.300 34.615 8.81 0.00 35.05 1.52
421 422 7.306574 GCAGTTGTACTTTGCTTTGGATTAAAC 60.307 37.037 8.81 0.00 35.05 2.01
422 423 7.704472 CAGTTGTACTTTGCTTTGGATTAAACA 59.296 33.333 0.00 0.00 0.00 2.83
423 424 8.421002 AGTTGTACTTTGCTTTGGATTAAACAT 58.579 29.630 0.00 0.00 0.00 2.71
424 425 9.040939 GTTGTACTTTGCTTTGGATTAAACATT 57.959 29.630 0.00 0.00 0.00 2.71
425 426 9.606631 TTGTACTTTGCTTTGGATTAAACATTT 57.393 25.926 0.00 0.00 0.00 2.32
426 427 9.606631 TGTACTTTGCTTTGGATTAAACATTTT 57.393 25.926 0.00 0.00 0.00 1.82
451 452 6.959671 TTTGCAAACACACTTCTTTTTAGG 57.040 33.333 8.05 0.00 0.00 2.69
452 453 5.906113 TGCAAACACACTTCTTTTTAGGA 57.094 34.783 0.00 0.00 0.00 2.94
453 454 6.274157 TGCAAACACACTTCTTTTTAGGAA 57.726 33.333 0.00 0.00 0.00 3.36
454 455 6.096695 TGCAAACACACTTCTTTTTAGGAAC 58.903 36.000 0.00 0.00 0.00 3.62
455 456 6.071616 TGCAAACACACTTCTTTTTAGGAACT 60.072 34.615 0.00 0.00 46.37 3.01
456 457 6.811665 GCAAACACACTTCTTTTTAGGAACTT 59.188 34.615 0.00 0.00 41.75 2.66
457 458 7.330946 GCAAACACACTTCTTTTTAGGAACTTT 59.669 33.333 0.00 0.00 41.75 2.66
458 459 9.203421 CAAACACACTTCTTTTTAGGAACTTTT 57.797 29.630 0.00 0.00 41.75 2.27
459 460 9.772973 AAACACACTTCTTTTTAGGAACTTTTT 57.227 25.926 0.00 0.00 41.75 1.94
482 483 8.801715 TTTTTGCAACAAAACTTTATTTGCAA 57.198 23.077 21.03 21.03 46.01 4.08
483 484 8.445193 TTTTGCAACAAAACTTTATTTGCAAG 57.555 26.923 22.42 0.00 46.93 4.01
484 485 6.116680 TGCAACAAAACTTTATTTGCAAGG 57.883 33.333 15.51 0.00 41.49 3.61
485 486 4.969395 GCAACAAAACTTTATTTGCAAGGC 59.031 37.500 0.00 0.00 42.68 4.35
486 487 5.448360 GCAACAAAACTTTATTTGCAAGGCA 60.448 36.000 0.00 0.00 42.68 4.75
487 488 5.733226 ACAAAACTTTATTTGCAAGGCAC 57.267 34.783 0.00 0.00 42.68 5.01
488 489 4.574421 ACAAAACTTTATTTGCAAGGCACC 59.426 37.500 0.00 0.00 42.68 5.01
489 490 3.401033 AACTTTATTTGCAAGGCACCC 57.599 42.857 0.00 0.00 38.71 4.61
490 491 1.623311 ACTTTATTTGCAAGGCACCCC 59.377 47.619 0.00 0.00 38.71 4.95
491 492 1.901833 CTTTATTTGCAAGGCACCCCT 59.098 47.619 0.00 0.00 45.77 4.79
504 505 2.441505 CCCCTTTGCCCGGGTTTA 59.558 61.111 24.63 6.20 40.24 2.01
505 506 1.001120 CCCCTTTGCCCGGGTTTAT 59.999 57.895 24.63 0.00 40.24 1.40
506 507 0.616395 CCCCTTTGCCCGGGTTTATT 60.616 55.000 24.63 0.00 40.24 1.40
507 508 1.342175 CCCCTTTGCCCGGGTTTATTA 60.342 52.381 24.63 0.87 40.24 0.98
508 509 2.028876 CCCTTTGCCCGGGTTTATTAG 58.971 52.381 24.63 10.89 36.91 1.73
509 510 1.407618 CCTTTGCCCGGGTTTATTAGC 59.592 52.381 24.63 5.07 0.00 3.09
510 511 1.407618 CTTTGCCCGGGTTTATTAGCC 59.592 52.381 24.63 1.56 41.19 3.93
511 512 0.396001 TTGCCCGGGTTTATTAGCCC 60.396 55.000 24.63 0.70 41.58 5.19
512 513 1.529948 GCCCGGGTTTATTAGCCCC 60.530 63.158 24.63 0.00 41.58 5.80
513 514 1.152138 CCCGGGTTTATTAGCCCCC 59.848 63.158 14.18 0.00 41.58 5.40
514 515 1.358051 CCCGGGTTTATTAGCCCCCT 61.358 60.000 14.18 0.00 41.58 4.79
515 516 0.554305 CCGGGTTTATTAGCCCCCTT 59.446 55.000 0.00 0.00 41.58 3.95
516 517 1.478105 CCGGGTTTATTAGCCCCCTTC 60.478 57.143 0.00 0.00 41.58 3.46
517 518 1.213430 CGGGTTTATTAGCCCCCTTCA 59.787 52.381 0.00 0.00 41.58 3.02
518 519 2.158519 CGGGTTTATTAGCCCCCTTCAT 60.159 50.000 0.00 0.00 41.58 2.57
519 520 3.073356 CGGGTTTATTAGCCCCCTTCATA 59.927 47.826 0.00 0.00 41.58 2.15
520 521 4.263771 CGGGTTTATTAGCCCCCTTCATAT 60.264 45.833 0.00 0.00 41.58 1.78
521 522 5.045432 CGGGTTTATTAGCCCCCTTCATATA 60.045 44.000 0.00 0.00 41.58 0.86
522 523 6.185511 GGGTTTATTAGCCCCCTTCATATAC 58.814 44.000 0.00 0.00 38.99 1.47
523 524 5.878669 GGTTTATTAGCCCCCTTCATATACG 59.121 44.000 0.00 0.00 0.00 3.06
524 525 5.687166 TTATTAGCCCCCTTCATATACGG 57.313 43.478 0.00 0.00 0.00 4.02
525 526 2.708037 TAGCCCCCTTCATATACGGT 57.292 50.000 0.00 0.00 0.00 4.83
526 527 1.056660 AGCCCCCTTCATATACGGTG 58.943 55.000 0.00 0.00 0.00 4.94
527 528 0.763035 GCCCCCTTCATATACGGTGT 59.237 55.000 0.00 0.00 0.00 4.16
528 529 1.270678 GCCCCCTTCATATACGGTGTC 60.271 57.143 0.00 0.00 0.00 3.67
529 530 1.000506 CCCCCTTCATATACGGTGTCG 59.999 57.143 0.00 0.00 43.02 4.35
530 531 1.958579 CCCCTTCATATACGGTGTCGA 59.041 52.381 0.00 0.00 40.11 4.20
531 532 2.363038 CCCCTTCATATACGGTGTCGAA 59.637 50.000 0.00 0.00 40.11 3.71
532 533 3.378339 CCCTTCATATACGGTGTCGAAC 58.622 50.000 0.00 0.00 40.11 3.95
533 534 3.067742 CCCTTCATATACGGTGTCGAACT 59.932 47.826 0.00 0.00 40.11 3.01
534 535 4.288531 CCTTCATATACGGTGTCGAACTC 58.711 47.826 0.00 0.00 40.11 3.01
535 536 4.036498 CCTTCATATACGGTGTCGAACTCT 59.964 45.833 0.00 0.00 40.11 3.24
536 537 4.547406 TCATATACGGTGTCGAACTCTG 57.453 45.455 0.00 0.00 40.11 3.35
537 538 3.314357 TCATATACGGTGTCGAACTCTGG 59.686 47.826 0.00 0.00 40.11 3.86
538 539 0.172803 ATACGGTGTCGAACTCTGGC 59.827 55.000 0.00 0.00 40.11 4.85
539 540 2.191354 TACGGTGTCGAACTCTGGCG 62.191 60.000 0.00 0.00 40.11 5.69
540 541 3.112709 GGTGTCGAACTCTGGCGC 61.113 66.667 0.00 0.00 0.00 6.53
541 542 2.049063 GTGTCGAACTCTGGCGCT 60.049 61.111 7.64 0.00 0.00 5.92
542 543 1.211969 GTGTCGAACTCTGGCGCTA 59.788 57.895 7.64 0.00 0.00 4.26
543 544 0.388134 GTGTCGAACTCTGGCGCTAA 60.388 55.000 7.64 0.00 0.00 3.09
544 545 0.109272 TGTCGAACTCTGGCGCTAAG 60.109 55.000 7.64 5.76 0.00 2.18
545 546 0.109226 GTCGAACTCTGGCGCTAAGT 60.109 55.000 7.64 5.65 0.00 2.24
546 547 0.601558 TCGAACTCTGGCGCTAAGTT 59.398 50.000 18.02 18.02 36.00 2.66
547 548 1.000506 TCGAACTCTGGCGCTAAGTTT 59.999 47.619 18.68 10.35 33.54 2.66
548 549 2.229543 TCGAACTCTGGCGCTAAGTTTA 59.770 45.455 18.68 10.82 33.54 2.01
549 550 2.991190 CGAACTCTGGCGCTAAGTTTAA 59.009 45.455 18.68 0.00 33.54 1.52
550 551 3.617263 CGAACTCTGGCGCTAAGTTTAAT 59.383 43.478 18.68 2.70 33.54 1.40
551 552 4.092968 CGAACTCTGGCGCTAAGTTTAATT 59.907 41.667 18.68 2.41 33.54 1.40
552 553 5.290158 CGAACTCTGGCGCTAAGTTTAATTA 59.710 40.000 18.68 0.00 33.54 1.40
553 554 6.183360 CGAACTCTGGCGCTAAGTTTAATTAA 60.183 38.462 18.68 0.00 33.54 1.40
554 555 7.465513 CGAACTCTGGCGCTAAGTTTAATTAAT 60.466 37.037 18.68 0.00 33.54 1.40
555 556 7.625828 ACTCTGGCGCTAAGTTTAATTAATT 57.374 32.000 7.64 5.89 0.00 1.40
556 557 8.726870 ACTCTGGCGCTAAGTTTAATTAATTA 57.273 30.769 7.64 3.71 0.00 1.40
557 558 9.169592 ACTCTGGCGCTAAGTTTAATTAATTAA 57.830 29.630 15.19 15.19 0.00 1.40
558 559 9.997482 CTCTGGCGCTAAGTTTAATTAATTAAA 57.003 29.630 23.39 23.39 39.24 1.52
740 741 5.326200 AGTGAGACTTATAAACCCAGACG 57.674 43.478 0.00 0.00 0.00 4.18
741 742 5.014858 AGTGAGACTTATAAACCCAGACGA 58.985 41.667 0.00 0.00 0.00 4.20
742 743 5.479375 AGTGAGACTTATAAACCCAGACGAA 59.521 40.000 0.00 0.00 0.00 3.85
743 744 5.805994 GTGAGACTTATAAACCCAGACGAAG 59.194 44.000 0.00 0.00 0.00 3.79
744 745 5.105473 TGAGACTTATAAACCCAGACGAAGG 60.105 44.000 0.00 0.00 0.00 3.46
745 746 5.021458 AGACTTATAAACCCAGACGAAGGA 58.979 41.667 0.00 0.00 0.00 3.36
746 747 5.482878 AGACTTATAAACCCAGACGAAGGAA 59.517 40.000 0.00 0.00 0.00 3.36
747 748 6.013984 AGACTTATAAACCCAGACGAAGGAAA 60.014 38.462 0.00 0.00 0.00 3.13
748 749 6.718294 ACTTATAAACCCAGACGAAGGAAAT 58.282 36.000 0.00 0.00 0.00 2.17
749 750 7.854337 ACTTATAAACCCAGACGAAGGAAATA 58.146 34.615 0.00 0.00 0.00 1.40
750 751 8.491958 ACTTATAAACCCAGACGAAGGAAATAT 58.508 33.333 0.00 0.00 0.00 1.28
751 752 8.671384 TTATAAACCCAGACGAAGGAAATATG 57.329 34.615 0.00 0.00 0.00 1.78
752 753 4.837093 AACCCAGACGAAGGAAATATGA 57.163 40.909 0.00 0.00 0.00 2.15
753 754 4.837093 ACCCAGACGAAGGAAATATGAA 57.163 40.909 0.00 0.00 0.00 2.57
754 755 5.174037 ACCCAGACGAAGGAAATATGAAA 57.826 39.130 0.00 0.00 0.00 2.69
755 756 5.186198 ACCCAGACGAAGGAAATATGAAAG 58.814 41.667 0.00 0.00 0.00 2.62
756 757 4.035675 CCCAGACGAAGGAAATATGAAAGC 59.964 45.833 0.00 0.00 0.00 3.51
757 758 4.635765 CCAGACGAAGGAAATATGAAAGCA 59.364 41.667 0.00 0.00 0.00 3.91
758 759 5.297776 CCAGACGAAGGAAATATGAAAGCAT 59.702 40.000 0.00 0.00 38.54 3.79
759 760 6.183360 CCAGACGAAGGAAATATGAAAGCATT 60.183 38.462 0.00 0.00 35.94 3.56
760 761 7.253422 CAGACGAAGGAAATATGAAAGCATTT 58.747 34.615 0.00 0.00 43.98 2.32
761 762 7.756722 CAGACGAAGGAAATATGAAAGCATTTT 59.243 33.333 0.00 0.00 39.27 1.82
762 763 8.306761 AGACGAAGGAAATATGAAAGCATTTTT 58.693 29.630 0.00 0.00 39.27 1.94
832 833 0.905337 AGGTGTGCCCTAGACCACTC 60.905 60.000 12.09 9.17 45.00 3.51
839 840 1.517832 CCTAGACCACTCCCTTGCG 59.482 63.158 0.00 0.00 0.00 4.85
886 890 1.599797 CTCGACCCCAACCGCTTTT 60.600 57.895 0.00 0.00 0.00 2.27
893 897 0.539669 CCCAACCGCTTTTTCTCCCT 60.540 55.000 0.00 0.00 0.00 4.20
894 898 1.328279 CCAACCGCTTTTTCTCCCTT 58.672 50.000 0.00 0.00 0.00 3.95
895 899 1.686587 CCAACCGCTTTTTCTCCCTTT 59.313 47.619 0.00 0.00 0.00 3.11
896 900 2.288213 CCAACCGCTTTTTCTCCCTTTC 60.288 50.000 0.00 0.00 0.00 2.62
897 901 2.623416 CAACCGCTTTTTCTCCCTTTCT 59.377 45.455 0.00 0.00 0.00 2.52
936 942 1.128188 ACACCACACCTTCCTCCCTC 61.128 60.000 0.00 0.00 0.00 4.30
1074 1080 2.783935 GAGGACGACTCCGACGAC 59.216 66.667 0.00 0.00 42.22 4.34
1075 1081 3.081159 GAGGACGACTCCGACGACG 62.081 68.421 0.00 0.00 42.22 5.12
1077 1083 2.394912 GACGACTCCGACGACGAG 59.605 66.667 9.28 6.99 42.66 4.18
1078 1084 3.081159 GACGACTCCGACGACGAGG 62.081 68.421 9.28 4.69 42.66 4.63
1079 1085 3.862402 CGACTCCGACGACGAGGG 61.862 72.222 9.28 1.79 42.66 4.30
1080 1086 4.176851 GACTCCGACGACGAGGGC 62.177 72.222 9.28 0.00 42.66 5.19
1086 1092 4.436998 GACGACGAGGGCCACCAG 62.437 72.222 6.18 0.00 40.13 4.00
1170 1176 1.757340 GGAGGTCGAGGGTTCCGAT 60.757 63.158 0.00 0.00 38.38 4.18
1353 1364 1.265236 TTTGCTCCCGATTTTGCCAT 58.735 45.000 0.00 0.00 0.00 4.40
1373 1384 1.031571 GCGCTGTCCATGATTTCCCA 61.032 55.000 0.00 0.00 0.00 4.37
1381 1392 6.681368 GCTGTCCATGATTTCCCATAAAGAAC 60.681 42.308 0.00 0.00 0.00 3.01
1416 1427 1.515081 TTCGGGCTTAAGTTTCGTGG 58.485 50.000 4.02 0.00 0.00 4.94
1445 1469 1.238625 TTCCGCGGATGTTTTGGGAC 61.239 55.000 31.56 0.00 0.00 4.46
1485 1509 0.104620 GTTGCCTCCCCTATCCCCTA 60.105 60.000 0.00 0.00 0.00 3.53
1490 1514 0.900647 CTCCCCTATCCCCTAGCGTG 60.901 65.000 0.00 0.00 0.00 5.34
1510 1534 3.056313 GCGGTGGAAATGGCTGCTC 62.056 63.158 0.00 0.00 0.00 4.26
1524 1548 1.002033 GCTGCTCCATTCCGCATTTAG 60.002 52.381 0.00 0.00 35.32 1.85
1548 1572 3.325135 AGGACTAATTTAGGATCTGCCCG 59.675 47.826 8.26 0.00 37.37 6.13
1598 1629 6.949352 TGGAAAGATTTCTATCCTTGATGC 57.051 37.500 5.37 0.00 37.35 3.91
1612 1643 4.889409 TCCTTGATGCTGTCTGAACTTTTT 59.111 37.500 0.00 0.00 0.00 1.94
1613 1644 6.061441 TCCTTGATGCTGTCTGAACTTTTTA 58.939 36.000 0.00 0.00 0.00 1.52
1614 1645 6.716628 TCCTTGATGCTGTCTGAACTTTTTAT 59.283 34.615 0.00 0.00 0.00 1.40
1615 1646 6.805271 CCTTGATGCTGTCTGAACTTTTTATG 59.195 38.462 0.00 0.00 0.00 1.90
1616 1647 6.882610 TGATGCTGTCTGAACTTTTTATGT 57.117 33.333 0.00 0.00 0.00 2.29
1617 1648 6.902341 TGATGCTGTCTGAACTTTTTATGTC 58.098 36.000 0.00 0.00 0.00 3.06
1692 1728 2.281484 TGCAAGAAGACGGGGCAC 60.281 61.111 0.00 0.00 0.00 5.01
1765 1801 1.565759 TCCTATGCAAGATGCCAGGTT 59.434 47.619 15.54 0.00 44.23 3.50
1823 1859 3.852578 ACTTTGGGATTGGGTGAGTAGAT 59.147 43.478 0.00 0.00 0.00 1.98
1864 1900 8.560374 ACTAATTTGAGTTGCTGAGTTAGAAAC 58.440 33.333 0.00 0.00 44.17 2.78
1979 2022 4.563184 GTCTAACTGCTTGTTCCAGATACG 59.437 45.833 0.00 0.00 39.89 3.06
1985 2028 6.273825 ACTGCTTGTTCCAGATACGTATAAG 58.726 40.000 8.34 7.74 34.47 1.73
2028 2071 5.500234 TGAGACAAGAGGGATACAAATTGG 58.500 41.667 0.00 0.00 39.74 3.16
2053 2096 4.072131 GGTATTGATGAACCGCCACATAT 58.928 43.478 0.00 0.00 0.00 1.78
2055 2098 4.572985 ATTGATGAACCGCCACATATTG 57.427 40.909 0.00 0.00 0.00 1.90
2061 2104 3.570125 TGAACCGCCACATATTGTTTTCA 59.430 39.130 0.00 0.00 0.00 2.69
2062 2105 4.038042 TGAACCGCCACATATTGTTTTCAA 59.962 37.500 0.00 0.00 44.33 2.69
2066 2109 4.201705 CCGCCACATATTGTTTTCAAATGC 60.202 41.667 0.00 0.00 43.39 3.56
2073 2116 4.914312 ATTGTTTTCAAATGCATCTGCG 57.086 36.364 0.00 0.00 42.96 5.18
2085 2128 2.366469 ATCTGCGGACAGGTGTCTT 58.634 52.632 9.90 0.00 44.59 3.01
2086 2129 1.557099 ATCTGCGGACAGGTGTCTTA 58.443 50.000 9.90 0.00 44.59 2.10
2091 2134 3.093814 TGCGGACAGGTGTCTTAGATAA 58.906 45.455 9.90 0.00 44.20 1.75
2108 2151 8.429641 TCTTAGATAACTGTTTCCTTTGACTGT 58.570 33.333 0.00 0.00 0.00 3.55
2191 2236 5.377478 TCCGAGTCACTGATACTATGATGT 58.623 41.667 0.00 0.00 0.00 3.06
2311 2356 4.957296 ACACTTCACTGGATTACGTCTTT 58.043 39.130 0.00 0.00 0.00 2.52
2606 2651 2.377136 CAGTCCTACCACTGGGCTT 58.623 57.895 0.00 0.00 37.44 4.35
2612 2657 1.247567 CTACCACTGGGCTTTGTTGG 58.752 55.000 0.00 0.00 37.90 3.77
2625 2670 4.322567 GCTTTGTTGGCCATTTAATTCCA 58.677 39.130 6.09 0.00 0.00 3.53
2627 2672 6.112058 GCTTTGTTGGCCATTTAATTCCATA 58.888 36.000 6.09 0.00 0.00 2.74
2654 2699 6.658849 AGTATGGTCACATTGCAGGTATTTA 58.341 36.000 0.00 0.00 38.53 1.40
2659 2704 5.048713 GGTCACATTGCAGGTATTTATAGGC 60.049 44.000 0.00 0.00 0.00 3.93
2684 2732 8.055986 GCGACTAAAAATTCCTTTGTTTTTCTG 58.944 33.333 0.00 0.00 38.22 3.02
2687 2735 9.378551 ACTAAAAATTCCTTTGTTTTTCTGTCC 57.621 29.630 0.00 0.00 38.22 4.02
2688 2736 9.377312 CTAAAAATTCCTTTGTTTTTCTGTCCA 57.623 29.630 0.00 0.00 38.22 4.02
2689 2737 7.609760 AAAATTCCTTTGTTTTTCTGTCCAC 57.390 32.000 0.00 0.00 0.00 4.02
2690 2738 5.930837 ATTCCTTTGTTTTTCTGTCCACA 57.069 34.783 0.00 0.00 0.00 4.17
2691 2739 5.730296 TTCCTTTGTTTTTCTGTCCACAA 57.270 34.783 0.00 0.00 0.00 3.33
2711 2759 3.847671 AAGAAAGGGCTACTAGGCATC 57.152 47.619 11.51 6.59 43.44 3.91
2817 2866 4.757149 GCTTGATGGCTATTATCCGTTCTT 59.243 41.667 0.00 0.00 0.00 2.52
2871 2920 9.553064 GATATGATCTTATTCAGGTTTGACACT 57.447 33.333 2.87 0.00 31.71 3.55
2947 2996 4.692625 CAGACTTAGACACTGGAATTGGTG 59.307 45.833 0.00 0.00 39.13 4.17
2964 3013 2.290387 TGGTGCGCCCTTGTTAAATCTA 60.290 45.455 15.15 0.00 0.00 1.98
2973 3022 5.105877 GCCCTTGTTAAATCTAAACCCAGAC 60.106 44.000 0.00 0.00 0.00 3.51
3041 3090 2.098117 AGATTGCTGCGCTAAAATGGAC 59.902 45.455 9.73 0.00 0.00 4.02
3045 3094 2.295909 TGCTGCGCTAAAATGGACTTTT 59.704 40.909 9.73 0.00 40.21 2.27
3122 3204 8.715191 AACATTTCTTTGCATTGTTCTGTTTA 57.285 26.923 0.00 0.00 0.00 2.01
3129 3211 9.376075 TCTTTGCATTGTTCTGTTTATTTTTCA 57.624 25.926 0.00 0.00 0.00 2.69
3142 3224 6.989169 TGTTTATTTTTCACATCCACTTTGGG 59.011 34.615 0.00 0.00 38.32 4.12
3372 3454 7.169158 TCTTTTGAAACTGTTGACTTGGATT 57.831 32.000 0.00 0.00 0.00 3.01
3383 3465 8.522830 ACTGTTGACTTGGATTTTAATATGGTG 58.477 33.333 0.00 0.00 0.00 4.17
3430 3512 9.912634 GAACTCAATTCCAAATGAAGTTATGAA 57.087 29.630 0.00 0.00 36.14 2.57
3432 3514 9.865321 ACTCAATTCCAAATGAAGTTATGAATG 57.135 29.630 0.00 0.00 36.14 2.67
3545 3627 5.045869 ACATATACCATATACGCCTTTGCCT 60.046 40.000 0.00 0.00 0.00 4.75
3588 3670 5.331607 GCGAGCTATATGTCTGTTTTACACG 60.332 44.000 0.00 0.00 0.00 4.49
3598 3680 7.773864 TGTCTGTTTTACACGTTAATTCTCA 57.226 32.000 0.00 0.00 0.00 3.27
3734 3816 3.270027 CAGCGGGAATGATCACTTTGTA 58.730 45.455 0.00 0.00 0.00 2.41
3778 3860 5.221986 ACGTACAAATCCCTTTCTTTACCCT 60.222 40.000 0.00 0.00 0.00 4.34
3779 3861 6.013466 ACGTACAAATCCCTTTCTTTACCCTA 60.013 38.462 0.00 0.00 0.00 3.53
4003 4090 5.131142 TCTGGAATCCCCAAGTAGAGAAATC 59.869 44.000 0.00 0.00 46.07 2.17
4048 4135 1.532868 CACTTGACTCCCTTCAAAGCG 59.467 52.381 0.00 0.00 35.07 4.68
4074 4161 3.244911 TGGGATCCAAAGGTTCAGTTCTC 60.245 47.826 15.23 0.00 0.00 2.87
4079 4166 2.737252 CCAAAGGTTCAGTTCTCGCTAC 59.263 50.000 0.00 0.00 0.00 3.58
4080 4167 3.390135 CAAAGGTTCAGTTCTCGCTACA 58.610 45.455 0.00 0.00 0.00 2.74
4138 4234 3.681593 TGCAAAAGCTAACATGCCAAT 57.318 38.095 9.55 0.00 38.00 3.16
4146 4242 7.832503 AAAGCTAACATGCCAATTTTGATAC 57.167 32.000 0.00 0.00 0.00 2.24
4148 4244 4.207019 GCTAACATGCCAATTTTGATACGC 59.793 41.667 0.00 0.00 0.00 4.42
4156 4252 6.159293 TGCCAATTTTGATACGCAATGTTAA 58.841 32.000 0.00 0.00 36.15 2.01
4190 4286 5.106908 GGATTACTCAGAAACAGTTGCAGTC 60.107 44.000 0.00 0.00 0.00 3.51
4211 4307 6.035005 CAGTCATTGGTCGTTACATAAGTGAG 59.965 42.308 0.00 0.00 0.00 3.51
4235 4331 2.200373 ACAATGGGGTTGCTCTACAC 57.800 50.000 0.00 0.00 41.69 2.90
4262 4358 4.284829 TGATTTCATAGACACCAGCACA 57.715 40.909 0.00 0.00 0.00 4.57
4349 4445 2.625314 TCCTCAAGATGACATCCTAGCG 59.375 50.000 11.92 0.00 0.00 4.26
4379 4475 3.800604 GCTCAAGGTAGACCATTCGATCC 60.801 52.174 0.66 0.00 38.89 3.36
4391 4487 4.041198 ACCATTCGATCCGTATTTACCCAT 59.959 41.667 0.00 0.00 0.00 4.00
4410 4506 5.960811 ACCCATCATATCTATCTACCAGTGG 59.039 44.000 7.91 7.91 0.00 4.00
4411 4507 6.197903 CCCATCATATCTATCTACCAGTGGA 58.802 44.000 18.40 0.00 0.00 4.02
4412 4508 6.097554 CCCATCATATCTATCTACCAGTGGAC 59.902 46.154 18.40 0.00 0.00 4.02
4416 4512 7.175797 TCATATCTATCTACCAGTGGACGATT 58.824 38.462 18.40 5.00 0.00 3.34
4419 4515 6.540438 TCTATCTACCAGTGGACGATTTTT 57.460 37.500 18.40 0.00 0.00 1.94
4793 4891 1.923227 GCTTAACACGCTGAAGCCCC 61.923 60.000 0.00 0.00 39.75 5.80
4794 4892 0.605319 CTTAACACGCTGAAGCCCCA 60.605 55.000 0.00 0.00 37.91 4.96
4865 4963 3.731652 TGTGTTGCTTTTGAATCCTGG 57.268 42.857 0.00 0.00 0.00 4.45
4871 4969 1.337167 GCTTTTGAATCCTGGTGTGCC 60.337 52.381 0.00 0.00 0.00 5.01
4967 5065 4.992951 GCTTTTGAATCCTGATGTGCTTTT 59.007 37.500 0.00 0.00 0.00 2.27
4972 5070 0.251742 TCCTGATGTGCTTTTGGGGG 60.252 55.000 0.00 0.00 0.00 5.40
4978 5077 3.513515 TGATGTGCTTTTGGGGGTAAATC 59.486 43.478 0.00 0.00 0.00 2.17
4982 5081 4.083565 GTGCTTTTGGGGGTAAATCTGTA 58.916 43.478 0.00 0.00 0.00 2.74
5037 5137 4.712191 TGCTTGAATGCAATTTCAAACG 57.288 36.364 14.61 7.13 43.12 3.60
5078 5209 4.202111 GCCCTATGTGTTTCAGTGTTTGTT 60.202 41.667 0.00 0.00 0.00 2.83
5079 5210 5.280945 CCCTATGTGTTTCAGTGTTTGTTG 58.719 41.667 0.00 0.00 0.00 3.33
5080 5211 5.163561 CCCTATGTGTTTCAGTGTTTGTTGT 60.164 40.000 0.00 0.00 0.00 3.32
5081 5212 5.971202 CCTATGTGTTTCAGTGTTTGTTGTC 59.029 40.000 0.00 0.00 0.00 3.18
5082 5213 4.837896 TGTGTTTCAGTGTTTGTTGTCA 57.162 36.364 0.00 0.00 0.00 3.58
5083 5214 5.384063 TGTGTTTCAGTGTTTGTTGTCAT 57.616 34.783 0.00 0.00 0.00 3.06
5084 5215 5.398169 TGTGTTTCAGTGTTTGTTGTCATC 58.602 37.500 0.00 0.00 0.00 2.92
5085 5216 5.182950 TGTGTTTCAGTGTTTGTTGTCATCT 59.817 36.000 0.00 0.00 0.00 2.90
5086 5217 5.512788 GTGTTTCAGTGTTTGTTGTCATCTG 59.487 40.000 0.00 0.00 0.00 2.90
5087 5218 3.969117 TCAGTGTTTGTTGTCATCTGC 57.031 42.857 0.00 0.00 0.00 4.26
5088 5219 3.544684 TCAGTGTTTGTTGTCATCTGCT 58.455 40.909 0.00 0.00 0.00 4.24
5089 5220 3.561310 TCAGTGTTTGTTGTCATCTGCTC 59.439 43.478 0.00 0.00 0.00 4.26
5090 5221 3.562973 CAGTGTTTGTTGTCATCTGCTCT 59.437 43.478 0.00 0.00 0.00 4.09
5091 5222 4.751600 CAGTGTTTGTTGTCATCTGCTCTA 59.248 41.667 0.00 0.00 0.00 2.43
5092 5223 5.410746 CAGTGTTTGTTGTCATCTGCTCTAT 59.589 40.000 0.00 0.00 0.00 1.98
5093 5224 5.410746 AGTGTTTGTTGTCATCTGCTCTATG 59.589 40.000 0.00 0.00 0.00 2.23
5094 5225 5.180117 GTGTTTGTTGTCATCTGCTCTATGT 59.820 40.000 0.00 0.00 0.00 2.29
5095 5226 5.179929 TGTTTGTTGTCATCTGCTCTATGTG 59.820 40.000 0.00 0.00 0.00 3.21
5096 5227 4.541973 TGTTGTCATCTGCTCTATGTGT 57.458 40.909 0.00 0.00 0.00 3.72
5097 5228 4.898320 TGTTGTCATCTGCTCTATGTGTT 58.102 39.130 0.00 0.00 0.00 3.32
5098 5229 5.308014 TGTTGTCATCTGCTCTATGTGTTT 58.692 37.500 0.00 0.00 0.00 2.83
5099 5230 5.409520 TGTTGTCATCTGCTCTATGTGTTTC 59.590 40.000 0.00 0.00 0.00 2.78
5100 5231 5.151297 TGTCATCTGCTCTATGTGTTTCA 57.849 39.130 0.00 0.00 0.00 2.69
5101 5232 5.173664 TGTCATCTGCTCTATGTGTTTCAG 58.826 41.667 0.00 0.00 0.00 3.02
5102 5233 5.174395 GTCATCTGCTCTATGTGTTTCAGT 58.826 41.667 0.00 0.00 0.00 3.41
5103 5234 5.063186 GTCATCTGCTCTATGTGTTTCAGTG 59.937 44.000 0.00 0.00 0.00 3.66
5104 5235 4.607293 TCTGCTCTATGTGTTTCAGTGT 57.393 40.909 0.00 0.00 0.00 3.55
5105 5236 4.960938 TCTGCTCTATGTGTTTCAGTGTT 58.039 39.130 0.00 0.00 0.00 3.32
5106 5237 4.991056 TCTGCTCTATGTGTTTCAGTGTTC 59.009 41.667 0.00 0.00 0.00 3.18
5107 5238 3.740832 TGCTCTATGTGTTTCAGTGTTCG 59.259 43.478 0.00 0.00 0.00 3.95
5108 5239 3.741344 GCTCTATGTGTTTCAGTGTTCGT 59.259 43.478 0.00 0.00 0.00 3.85
5170 5301 5.336372 GCACAAATGGTATGTCTAGGCAAAA 60.336 40.000 0.00 0.00 0.00 2.44
5175 5306 7.582667 AATGGTATGTCTAGGCAAAATAACC 57.417 36.000 0.00 5.26 0.00 2.85
5176 5307 6.321821 TGGTATGTCTAGGCAAAATAACCT 57.678 37.500 0.00 0.00 40.24 3.50
5178 5309 7.863722 TGGTATGTCTAGGCAAAATAACCTAA 58.136 34.615 0.00 0.00 38.07 2.69
5189 5321 9.421399 AGGCAAAATAACCTAATATAGCAACTT 57.579 29.630 0.00 0.00 33.38 2.66
5234 5366 6.815142 TGTGAATGACTGAGATTATGTCACTG 59.185 38.462 0.00 0.00 42.43 3.66
5279 5411 5.221322 TGCCACTATACTGACTGCTGAATAG 60.221 44.000 0.00 0.12 0.00 1.73
5314 5446 3.423206 CGTGAATTTCTGCTTTTGACAGC 59.577 43.478 0.00 0.00 40.55 4.40
5358 5491 5.503498 CCAAACAATGTTTCTTGCAATGTG 58.497 37.500 8.59 0.00 31.23 3.21
5380 5513 5.472137 GTGGATTGTTTACTAGCTCACCAAA 59.528 40.000 0.00 0.00 0.00 3.28
5393 5526 3.375299 GCTCACCAAACATCTACCATCAC 59.625 47.826 0.00 0.00 0.00 3.06
5395 5528 5.178096 TCACCAAACATCTACCATCACAT 57.822 39.130 0.00 0.00 0.00 3.21
5408 5541 2.477357 CCATCACATGCTTTGAGCTTCG 60.477 50.000 0.00 0.00 42.97 3.79
5462 5596 2.437651 ACTGGTCAAACCCCAAAAATGG 59.562 45.455 0.00 0.00 37.50 3.16
5569 5703 1.305623 CCAGCCAGCTTCCTCCATT 59.694 57.895 0.00 0.00 0.00 3.16
5607 5741 3.028850 CAAATCCATCCTCCAATGCAGT 58.971 45.455 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.068215 TGGTGGGAAGAAAGGTGAAATAA 57.932 39.130 0.00 0.00 0.00 1.40
5 6 3.496331 GATGGTGGGAAGAAAGGTGAAA 58.504 45.455 0.00 0.00 0.00 2.69
6 7 2.225017 GGATGGTGGGAAGAAAGGTGAA 60.225 50.000 0.00 0.00 0.00 3.18
7 8 1.354368 GGATGGTGGGAAGAAAGGTGA 59.646 52.381 0.00 0.00 0.00 4.02
8 9 1.616994 GGGATGGTGGGAAGAAAGGTG 60.617 57.143 0.00 0.00 0.00 4.00
9 10 0.704664 GGGATGGTGGGAAGAAAGGT 59.295 55.000 0.00 0.00 0.00 3.50
10 11 1.002857 AGGGATGGTGGGAAGAAAGG 58.997 55.000 0.00 0.00 0.00 3.11
11 12 2.728007 GAAGGGATGGTGGGAAGAAAG 58.272 52.381 0.00 0.00 0.00 2.62
12 13 1.004277 CGAAGGGATGGTGGGAAGAAA 59.996 52.381 0.00 0.00 0.00 2.52
13 14 0.618458 CGAAGGGATGGTGGGAAGAA 59.382 55.000 0.00 0.00 0.00 2.52
14 15 0.546747 ACGAAGGGATGGTGGGAAGA 60.547 55.000 0.00 0.00 0.00 2.87
15 16 0.107654 GACGAAGGGATGGTGGGAAG 60.108 60.000 0.00 0.00 0.00 3.46
16 17 1.559065 GGACGAAGGGATGGTGGGAA 61.559 60.000 0.00 0.00 0.00 3.97
17 18 1.993391 GGACGAAGGGATGGTGGGA 60.993 63.158 0.00 0.00 0.00 4.37
18 19 1.847798 TTGGACGAAGGGATGGTGGG 61.848 60.000 0.00 0.00 0.00 4.61
19 20 0.676782 GTTGGACGAAGGGATGGTGG 60.677 60.000 0.00 0.00 0.00 4.61
20 21 0.676782 GGTTGGACGAAGGGATGGTG 60.677 60.000 0.00 0.00 0.00 4.17
21 22 0.840722 AGGTTGGACGAAGGGATGGT 60.841 55.000 0.00 0.00 0.00 3.55
22 23 0.328258 AAGGTTGGACGAAGGGATGG 59.672 55.000 0.00 0.00 0.00 3.51
23 24 1.679032 GGAAGGTTGGACGAAGGGATG 60.679 57.143 0.00 0.00 0.00 3.51
24 25 0.618981 GGAAGGTTGGACGAAGGGAT 59.381 55.000 0.00 0.00 0.00 3.85
25 26 0.765135 TGGAAGGTTGGACGAAGGGA 60.765 55.000 0.00 0.00 0.00 4.20
26 27 0.328258 ATGGAAGGTTGGACGAAGGG 59.672 55.000 0.00 0.00 0.00 3.95
27 28 1.271379 ACATGGAAGGTTGGACGAAGG 60.271 52.381 0.00 0.00 0.00 3.46
28 29 2.185004 ACATGGAAGGTTGGACGAAG 57.815 50.000 0.00 0.00 0.00 3.79
29 30 3.992943 ATACATGGAAGGTTGGACGAA 57.007 42.857 0.00 0.00 28.09 3.85
30 31 4.651962 TCATATACATGGAAGGTTGGACGA 59.348 41.667 0.00 0.00 32.61 4.20
31 32 4.956085 TCATATACATGGAAGGTTGGACG 58.044 43.478 0.00 0.00 32.61 4.79
32 33 9.520515 AATTATCATATACATGGAAGGTTGGAC 57.479 33.333 0.00 0.00 32.61 4.02
74 75 6.635030 AGTGAAATTGGTTGAGAAGGTAAC 57.365 37.500 0.00 0.00 0.00 2.50
75 76 7.654022 AAAGTGAAATTGGTTGAGAAGGTAA 57.346 32.000 0.00 0.00 0.00 2.85
76 77 7.996644 ACTAAAGTGAAATTGGTTGAGAAGGTA 59.003 33.333 0.00 0.00 0.00 3.08
77 78 6.833933 ACTAAAGTGAAATTGGTTGAGAAGGT 59.166 34.615 0.00 0.00 0.00 3.50
78 79 7.277174 ACTAAAGTGAAATTGGTTGAGAAGG 57.723 36.000 0.00 0.00 0.00 3.46
81 82 9.403583 AGTAAACTAAAGTGAAATTGGTTGAGA 57.596 29.630 0.00 0.00 32.68 3.27
86 87 9.411189 TGGTAAGTAAACTAAAGTGAAATTGGT 57.589 29.630 0.00 0.00 0.00 3.67
93 94 9.895138 AGAAGTTTGGTAAGTAAACTAAAGTGA 57.105 29.630 3.84 0.00 44.98 3.41
121 122 9.621629 TGACCGTGAATTACCTTATATTTTGAT 57.378 29.630 0.00 0.00 0.00 2.57
122 123 9.104965 CTGACCGTGAATTACCTTATATTTTGA 57.895 33.333 0.00 0.00 0.00 2.69
123 124 9.104965 TCTGACCGTGAATTACCTTATATTTTG 57.895 33.333 0.00 0.00 0.00 2.44
124 125 9.675464 TTCTGACCGTGAATTACCTTATATTTT 57.325 29.630 0.00 0.00 0.00 1.82
125 126 9.847224 ATTCTGACCGTGAATTACCTTATATTT 57.153 29.630 0.00 0.00 30.84 1.40
126 127 9.847224 AATTCTGACCGTGAATTACCTTATATT 57.153 29.630 0.00 0.00 40.88 1.28
127 128 9.847224 AAATTCTGACCGTGAATTACCTTATAT 57.153 29.630 0.00 0.00 41.54 0.86
128 129 9.104965 CAAATTCTGACCGTGAATTACCTTATA 57.895 33.333 0.00 0.00 41.54 0.98
129 130 7.827236 TCAAATTCTGACCGTGAATTACCTTAT 59.173 33.333 0.00 0.00 41.54 1.73
130 131 7.162761 TCAAATTCTGACCGTGAATTACCTTA 58.837 34.615 0.00 0.00 41.54 2.69
131 132 6.001460 TCAAATTCTGACCGTGAATTACCTT 58.999 36.000 0.00 0.00 41.54 3.50
132 133 5.556915 TCAAATTCTGACCGTGAATTACCT 58.443 37.500 0.00 0.00 41.54 3.08
133 134 5.873179 TCAAATTCTGACCGTGAATTACC 57.127 39.130 0.00 0.00 41.54 2.85
134 135 7.072177 TCATCAAATTCTGACCGTGAATTAC 57.928 36.000 0.00 0.00 41.54 1.89
135 136 7.174080 TGTTCATCAAATTCTGACCGTGAATTA 59.826 33.333 0.00 0.00 41.54 1.40
136 137 6.016360 TGTTCATCAAATTCTGACCGTGAATT 60.016 34.615 0.00 0.00 43.44 2.17
137 138 5.473162 TGTTCATCAAATTCTGACCGTGAAT 59.527 36.000 0.00 0.00 34.60 2.57
138 139 4.819088 TGTTCATCAAATTCTGACCGTGAA 59.181 37.500 0.00 0.00 36.69 3.18
139 140 4.384940 TGTTCATCAAATTCTGACCGTGA 58.615 39.130 0.00 0.00 36.69 4.35
140 141 4.747540 TGTTCATCAAATTCTGACCGTG 57.252 40.909 0.00 0.00 36.69 4.94
141 142 5.964958 AATGTTCATCAAATTCTGACCGT 57.035 34.783 0.00 0.00 36.69 4.83
142 143 8.915871 AATAAATGTTCATCAAATTCTGACCG 57.084 30.769 0.00 0.00 36.69 4.79
168 169 9.679661 ACCTGTCAATAATAATGTGATTGTGTA 57.320 29.630 0.00 0.00 33.27 2.90
169 170 8.579850 ACCTGTCAATAATAATGTGATTGTGT 57.420 30.769 0.00 0.00 33.27 3.72
180 181 9.461312 AGCTTGTGATTTACCTGTCAATAATAA 57.539 29.630 0.00 0.00 0.00 1.40
182 183 7.944729 AGCTTGTGATTTACCTGTCAATAAT 57.055 32.000 0.00 0.00 0.00 1.28
183 184 8.726988 GTTAGCTTGTGATTTACCTGTCAATAA 58.273 33.333 0.00 0.00 0.00 1.40
184 185 7.064134 CGTTAGCTTGTGATTTACCTGTCAATA 59.936 37.037 0.00 0.00 0.00 1.90
185 186 6.128282 CGTTAGCTTGTGATTTACCTGTCAAT 60.128 38.462 0.00 0.00 0.00 2.57
186 187 5.178623 CGTTAGCTTGTGATTTACCTGTCAA 59.821 40.000 0.00 0.00 0.00 3.18
187 188 4.688879 CGTTAGCTTGTGATTTACCTGTCA 59.311 41.667 0.00 0.00 0.00 3.58
188 189 4.689345 ACGTTAGCTTGTGATTTACCTGTC 59.311 41.667 0.00 0.00 0.00 3.51
189 190 4.638304 ACGTTAGCTTGTGATTTACCTGT 58.362 39.130 0.00 0.00 0.00 4.00
190 191 5.867716 AGTACGTTAGCTTGTGATTTACCTG 59.132 40.000 0.00 0.00 0.00 4.00
191 192 6.034161 AGTACGTTAGCTTGTGATTTACCT 57.966 37.500 0.00 0.00 0.00 3.08
192 193 7.253422 TCTAGTACGTTAGCTTGTGATTTACC 58.747 38.462 0.00 0.00 0.00 2.85
193 194 8.679288 TTCTAGTACGTTAGCTTGTGATTTAC 57.321 34.615 0.00 0.00 0.00 2.01
209 210 9.017669 GCAACGGGATATTAATATTCTAGTACG 57.982 37.037 12.58 9.76 0.00 3.67
210 211 9.865321 TGCAACGGGATATTAATATTCTAGTAC 57.135 33.333 12.58 9.66 0.00 2.73
212 213 9.216117 GTTGCAACGGGATATTAATATTCTAGT 57.784 33.333 14.90 10.36 0.00 2.57
231 232 3.839642 AATGCCCGTGCGTTGCAAC 62.840 57.895 19.89 19.89 44.90 4.17
232 233 3.600694 AATGCCCGTGCGTTGCAA 61.601 55.556 0.00 0.00 44.90 4.08
237 238 0.604243 TTAGAACAATGCCCGTGCGT 60.604 50.000 0.00 0.00 41.78 5.24
238 239 0.732571 ATTAGAACAATGCCCGTGCG 59.267 50.000 0.00 0.00 41.78 5.34
239 240 3.202906 TCTATTAGAACAATGCCCGTGC 58.797 45.455 0.00 0.00 38.26 5.34
240 241 4.693283 TCTCTATTAGAACAATGCCCGTG 58.307 43.478 0.00 0.00 0.00 4.94
241 242 5.552870 ATCTCTATTAGAACAATGCCCGT 57.447 39.130 0.00 0.00 37.89 5.28
242 243 7.872993 TCTTTATCTCTATTAGAACAATGCCCG 59.127 37.037 0.00 0.00 37.89 6.13
243 244 9.732130 ATCTTTATCTCTATTAGAACAATGCCC 57.268 33.333 0.00 0.00 37.89 5.36
267 268 9.787532 GCATCATTTGTACTCTCTATCTCTATC 57.212 37.037 0.00 0.00 0.00 2.08
268 269 8.748412 GGCATCATTTGTACTCTCTATCTCTAT 58.252 37.037 0.00 0.00 0.00 1.98
269 270 7.947332 AGGCATCATTTGTACTCTCTATCTCTA 59.053 37.037 0.00 0.00 0.00 2.43
270 271 6.782000 AGGCATCATTTGTACTCTCTATCTCT 59.218 38.462 0.00 0.00 0.00 3.10
271 272 6.991938 AGGCATCATTTGTACTCTCTATCTC 58.008 40.000 0.00 0.00 0.00 2.75
272 273 6.014669 GGAGGCATCATTTGTACTCTCTATCT 60.015 42.308 0.00 0.00 34.16 1.98
273 274 6.162777 GGAGGCATCATTTGTACTCTCTATC 58.837 44.000 0.00 0.00 34.16 2.08
274 275 5.604231 TGGAGGCATCATTTGTACTCTCTAT 59.396 40.000 0.00 0.00 34.16 1.98
275 276 4.962362 TGGAGGCATCATTTGTACTCTCTA 59.038 41.667 0.00 0.00 34.16 2.43
276 277 3.776969 TGGAGGCATCATTTGTACTCTCT 59.223 43.478 0.00 0.00 34.16 3.10
277 278 4.142609 TGGAGGCATCATTTGTACTCTC 57.857 45.455 0.00 0.00 34.16 3.20
278 279 4.411540 AGATGGAGGCATCATTTGTACTCT 59.588 41.667 0.00 0.00 34.16 3.24
279 280 4.712476 AGATGGAGGCATCATTTGTACTC 58.288 43.478 0.00 0.00 34.19 2.59
280 281 4.411540 AGAGATGGAGGCATCATTTGTACT 59.588 41.667 0.00 0.00 34.19 2.73
281 282 4.712476 AGAGATGGAGGCATCATTTGTAC 58.288 43.478 0.00 0.00 34.19 2.90
282 283 5.131642 AGAAGAGATGGAGGCATCATTTGTA 59.868 40.000 0.00 0.00 34.19 2.41
283 284 3.947612 AGAGATGGAGGCATCATTTGT 57.052 42.857 0.00 0.00 34.19 2.83
284 285 4.462133 AGAAGAGATGGAGGCATCATTTG 58.538 43.478 0.00 0.00 34.19 2.32
285 286 4.792513 AGAAGAGATGGAGGCATCATTT 57.207 40.909 0.00 0.00 34.19 2.32
286 287 5.221884 CCTTAGAAGAGATGGAGGCATCATT 60.222 44.000 0.00 0.00 34.19 2.57
287 288 4.286549 CCTTAGAAGAGATGGAGGCATCAT 59.713 45.833 0.00 0.00 34.19 2.45
288 289 3.645212 CCTTAGAAGAGATGGAGGCATCA 59.355 47.826 0.00 0.00 34.19 3.07
289 290 3.645687 ACCTTAGAAGAGATGGAGGCATC 59.354 47.826 0.00 0.00 0.00 3.91
290 291 3.663198 ACCTTAGAAGAGATGGAGGCAT 58.337 45.455 0.00 0.00 0.00 4.40
291 292 3.121929 ACCTTAGAAGAGATGGAGGCA 57.878 47.619 0.00 0.00 0.00 4.75
292 293 4.495690 AAACCTTAGAAGAGATGGAGGC 57.504 45.455 0.00 0.00 0.00 4.70
293 294 7.093289 TGACTAAAACCTTAGAAGAGATGGAGG 60.093 40.741 0.00 0.00 38.35 4.30
294 295 7.841956 TGACTAAAACCTTAGAAGAGATGGAG 58.158 38.462 0.00 0.00 38.35 3.86
295 296 7.792364 TGACTAAAACCTTAGAAGAGATGGA 57.208 36.000 0.00 0.00 38.35 3.41
296 297 8.097662 AGTTGACTAAAACCTTAGAAGAGATGG 58.902 37.037 0.00 0.00 38.35 3.51
297 298 9.495572 AAGTTGACTAAAACCTTAGAAGAGATG 57.504 33.333 0.00 0.00 38.35 2.90
298 299 9.713713 GAAGTTGACTAAAACCTTAGAAGAGAT 57.286 33.333 0.00 0.00 38.35 2.75
299 300 8.925338 AGAAGTTGACTAAAACCTTAGAAGAGA 58.075 33.333 0.00 0.00 38.35 3.10
300 301 9.549078 AAGAAGTTGACTAAAACCTTAGAAGAG 57.451 33.333 0.00 0.00 38.35 2.85
301 302 9.901172 AAAGAAGTTGACTAAAACCTTAGAAGA 57.099 29.630 0.00 0.00 38.35 2.87
303 304 9.901172 AGAAAGAAGTTGACTAAAACCTTAGAA 57.099 29.630 0.00 0.00 38.35 2.10
304 305 9.901172 AAGAAAGAAGTTGACTAAAACCTTAGA 57.099 29.630 0.00 0.00 38.35 2.10
309 310 9.512435 GGTAAAAGAAAGAAGTTGACTAAAACC 57.488 33.333 0.00 0.00 0.00 3.27
380 381 8.940768 AGTACAACTGCAACAAATAACAAAAT 57.059 26.923 0.00 0.00 0.00 1.82
381 382 8.764524 AAGTACAACTGCAACAAATAACAAAA 57.235 26.923 0.00 0.00 0.00 2.44
382 383 8.651588 CAAAGTACAACTGCAACAAATAACAAA 58.348 29.630 0.00 0.00 0.00 2.83
383 384 7.201478 GCAAAGTACAACTGCAACAAATAACAA 60.201 33.333 8.48 0.00 36.09 2.83
384 385 6.254589 GCAAAGTACAACTGCAACAAATAACA 59.745 34.615 8.48 0.00 36.09 2.41
385 386 6.475402 AGCAAAGTACAACTGCAACAAATAAC 59.525 34.615 14.03 0.00 38.58 1.89
386 387 6.568869 AGCAAAGTACAACTGCAACAAATAA 58.431 32.000 14.03 0.00 38.58 1.40
387 388 6.142818 AGCAAAGTACAACTGCAACAAATA 57.857 33.333 14.03 0.00 38.58 1.40
388 389 5.009854 AGCAAAGTACAACTGCAACAAAT 57.990 34.783 14.03 0.00 38.58 2.32
389 390 4.448537 AGCAAAGTACAACTGCAACAAA 57.551 36.364 14.03 0.00 38.58 2.83
390 391 4.448537 AAGCAAAGTACAACTGCAACAA 57.551 36.364 14.03 0.00 38.58 2.83
391 392 4.172505 CAAAGCAAAGTACAACTGCAACA 58.827 39.130 14.03 0.00 38.58 3.33
392 393 3.551485 CCAAAGCAAAGTACAACTGCAAC 59.449 43.478 14.03 0.00 38.58 4.17
393 394 3.445450 TCCAAAGCAAAGTACAACTGCAA 59.555 39.130 14.03 0.00 38.58 4.08
394 395 3.020274 TCCAAAGCAAAGTACAACTGCA 58.980 40.909 14.03 0.00 38.58 4.41
395 396 3.708563 TCCAAAGCAAAGTACAACTGC 57.291 42.857 0.00 0.37 36.29 4.40
396 397 7.704472 TGTTTAATCCAAAGCAAAGTACAACTG 59.296 33.333 0.00 0.00 0.00 3.16
397 398 7.777095 TGTTTAATCCAAAGCAAAGTACAACT 58.223 30.769 0.00 0.00 0.00 3.16
398 399 7.995463 TGTTTAATCCAAAGCAAAGTACAAC 57.005 32.000 0.00 0.00 0.00 3.32
399 400 9.606631 AAATGTTTAATCCAAAGCAAAGTACAA 57.393 25.926 0.00 0.00 0.00 2.41
400 401 9.606631 AAAATGTTTAATCCAAAGCAAAGTACA 57.393 25.926 0.00 0.00 0.00 2.90
426 427 7.657761 TCCTAAAAAGAAGTGTGTTTGCAAAAA 59.342 29.630 14.67 5.49 0.00 1.94
427 428 7.155328 TCCTAAAAAGAAGTGTGTTTGCAAAA 58.845 30.769 14.67 1.61 0.00 2.44
428 429 6.692486 TCCTAAAAAGAAGTGTGTTTGCAAA 58.308 32.000 8.05 8.05 0.00 3.68
429 430 6.274157 TCCTAAAAAGAAGTGTGTTTGCAA 57.726 33.333 0.00 0.00 0.00 4.08
430 431 5.906113 TCCTAAAAAGAAGTGTGTTTGCA 57.094 34.783 0.00 0.00 0.00 4.08
431 432 6.330278 AGTTCCTAAAAAGAAGTGTGTTTGC 58.670 36.000 0.00 0.00 0.00 3.68
432 433 8.757164 AAAGTTCCTAAAAAGAAGTGTGTTTG 57.243 30.769 0.00 0.00 0.00 2.93
433 434 9.772973 AAAAAGTTCCTAAAAAGAAGTGTGTTT 57.227 25.926 0.00 0.00 0.00 2.83
457 458 8.801715 TTGCAAATAAAGTTTTGTTGCAAAAA 57.198 23.077 29.95 18.51 46.91 1.94
461 462 5.448360 GCCTTGCAAATAAAGTTTTGTTGCA 60.448 36.000 23.97 23.97 43.97 4.08
462 463 4.969395 GCCTTGCAAATAAAGTTTTGTTGC 59.031 37.500 20.72 20.72 40.22 4.17
463 464 5.964751 GTGCCTTGCAAATAAAGTTTTGTTG 59.035 36.000 0.00 0.16 41.47 3.33
464 465 5.065859 GGTGCCTTGCAAATAAAGTTTTGTT 59.934 36.000 0.00 0.00 41.47 2.83
465 466 4.574421 GGTGCCTTGCAAATAAAGTTTTGT 59.426 37.500 0.00 0.00 41.47 2.83
466 467 4.024133 GGGTGCCTTGCAAATAAAGTTTTG 60.024 41.667 0.00 0.00 41.47 2.44
467 468 4.133820 GGGTGCCTTGCAAATAAAGTTTT 58.866 39.130 0.00 0.00 41.47 2.43
468 469 3.495983 GGGGTGCCTTGCAAATAAAGTTT 60.496 43.478 0.00 0.00 41.47 2.66
469 470 2.038426 GGGGTGCCTTGCAAATAAAGTT 59.962 45.455 0.00 0.00 41.47 2.66
470 471 1.623311 GGGGTGCCTTGCAAATAAAGT 59.377 47.619 0.00 0.00 41.47 2.66
471 472 1.901833 AGGGGTGCCTTGCAAATAAAG 59.098 47.619 0.00 0.00 41.47 1.85
472 473 2.022718 AGGGGTGCCTTGCAAATAAA 57.977 45.000 0.00 0.00 41.47 1.40
473 474 2.022718 AAGGGGTGCCTTGCAAATAA 57.977 45.000 0.00 0.00 41.47 1.40
474 475 1.622811 CAAAGGGGTGCCTTGCAAATA 59.377 47.619 0.00 0.00 41.47 1.40
475 476 0.397564 CAAAGGGGTGCCTTGCAAAT 59.602 50.000 0.00 0.00 41.47 2.32
476 477 1.828768 CAAAGGGGTGCCTTGCAAA 59.171 52.632 0.00 0.00 41.47 3.68
477 478 2.806009 GCAAAGGGGTGCCTTGCAA 61.806 57.895 0.00 0.00 41.47 4.08
478 479 3.233231 GCAAAGGGGTGCCTTGCA 61.233 61.111 8.27 0.00 38.66 4.08
489 490 1.407618 GCTAATAAACCCGGGCAAAGG 59.592 52.381 24.08 6.24 0.00 3.11
490 491 1.407618 GGCTAATAAACCCGGGCAAAG 59.592 52.381 24.08 10.92 0.00 2.77
491 492 1.476477 GGCTAATAAACCCGGGCAAA 58.524 50.000 24.08 5.95 0.00 3.68
492 493 0.396001 GGGCTAATAAACCCGGGCAA 60.396 55.000 24.08 6.41 36.07 4.52
493 494 1.227946 GGGCTAATAAACCCGGGCA 59.772 57.895 24.08 6.42 36.07 5.36
494 495 4.169271 GGGCTAATAAACCCGGGC 57.831 61.111 24.08 2.85 36.07 6.13
498 499 3.612795 ATGAAGGGGGCTAATAAACCC 57.387 47.619 0.00 0.00 46.24 4.11
499 500 5.878669 CGTATATGAAGGGGGCTAATAAACC 59.121 44.000 0.00 0.00 0.00 3.27
500 501 5.878669 CCGTATATGAAGGGGGCTAATAAAC 59.121 44.000 0.00 0.00 0.00 2.01
501 502 5.548836 ACCGTATATGAAGGGGGCTAATAAA 59.451 40.000 0.00 0.00 0.00 1.40
502 503 5.046159 CACCGTATATGAAGGGGGCTAATAA 60.046 44.000 0.00 0.00 0.00 1.40
503 504 4.468510 CACCGTATATGAAGGGGGCTAATA 59.531 45.833 0.00 0.00 0.00 0.98
504 505 3.263425 CACCGTATATGAAGGGGGCTAAT 59.737 47.826 0.00 0.00 0.00 1.73
505 506 2.635915 CACCGTATATGAAGGGGGCTAA 59.364 50.000 0.00 0.00 0.00 3.09
506 507 2.253610 CACCGTATATGAAGGGGGCTA 58.746 52.381 0.00 0.00 0.00 3.93
507 508 1.056660 CACCGTATATGAAGGGGGCT 58.943 55.000 0.00 0.00 0.00 5.19
508 509 0.763035 ACACCGTATATGAAGGGGGC 59.237 55.000 0.00 0.00 33.63 5.80
509 510 1.000506 CGACACCGTATATGAAGGGGG 59.999 57.143 0.00 0.00 33.63 5.40
510 511 1.958579 TCGACACCGTATATGAAGGGG 59.041 52.381 0.00 0.00 35.91 4.79
511 512 3.067742 AGTTCGACACCGTATATGAAGGG 59.932 47.826 0.00 0.00 37.05 3.95
512 513 4.036498 AGAGTTCGACACCGTATATGAAGG 59.964 45.833 0.00 0.00 37.05 3.46
513 514 4.970611 CAGAGTTCGACACCGTATATGAAG 59.029 45.833 0.00 0.00 37.05 3.02
514 515 4.201980 CCAGAGTTCGACACCGTATATGAA 60.202 45.833 0.00 0.00 37.05 2.57
515 516 3.314357 CCAGAGTTCGACACCGTATATGA 59.686 47.826 0.00 0.00 37.05 2.15
516 517 3.629058 CCAGAGTTCGACACCGTATATG 58.371 50.000 0.00 0.00 37.05 1.78
517 518 2.034305 GCCAGAGTTCGACACCGTATAT 59.966 50.000 0.00 0.00 37.05 0.86
518 519 1.402968 GCCAGAGTTCGACACCGTATA 59.597 52.381 0.00 0.00 37.05 1.47
519 520 0.172803 GCCAGAGTTCGACACCGTAT 59.827 55.000 0.00 0.00 37.05 3.06
520 521 1.582968 GCCAGAGTTCGACACCGTA 59.417 57.895 0.00 0.00 37.05 4.02
521 522 2.338984 GCCAGAGTTCGACACCGT 59.661 61.111 0.00 0.00 37.05 4.83
522 523 2.805353 CGCCAGAGTTCGACACCG 60.805 66.667 0.00 0.00 37.07 4.94
523 524 2.209064 TAGCGCCAGAGTTCGACACC 62.209 60.000 2.29 0.00 0.00 4.16
524 525 0.388134 TTAGCGCCAGAGTTCGACAC 60.388 55.000 2.29 0.00 0.00 3.67
525 526 0.109272 CTTAGCGCCAGAGTTCGACA 60.109 55.000 2.29 0.00 0.00 4.35
526 527 0.109226 ACTTAGCGCCAGAGTTCGAC 60.109 55.000 2.29 0.00 0.00 4.20
527 528 0.601558 AACTTAGCGCCAGAGTTCGA 59.398 50.000 2.29 0.00 0.00 3.71
528 529 1.429463 AAACTTAGCGCCAGAGTTCG 58.571 50.000 17.45 0.00 32.79 3.95
529 530 5.547181 AATTAAACTTAGCGCCAGAGTTC 57.453 39.130 17.45 0.00 32.79 3.01
530 531 7.625828 ATTAATTAAACTTAGCGCCAGAGTT 57.374 32.000 2.29 9.40 35.27 3.01
531 532 7.625828 AATTAATTAAACTTAGCGCCAGAGT 57.374 32.000 2.29 2.39 0.00 3.24
532 533 9.997482 TTTAATTAATTAAACTTAGCGCCAGAG 57.003 29.630 23.39 1.63 37.33 3.35
714 715 8.627403 CGTCTGGGTTTATAAGTCTCACTAATA 58.373 37.037 0.00 0.00 0.00 0.98
715 716 7.341256 TCGTCTGGGTTTATAAGTCTCACTAAT 59.659 37.037 0.00 0.00 0.00 1.73
716 717 6.660521 TCGTCTGGGTTTATAAGTCTCACTAA 59.339 38.462 0.00 0.00 0.00 2.24
717 718 6.182627 TCGTCTGGGTTTATAAGTCTCACTA 58.817 40.000 0.00 0.00 0.00 2.74
718 719 5.014858 TCGTCTGGGTTTATAAGTCTCACT 58.985 41.667 0.00 0.00 0.00 3.41
719 720 5.320549 TCGTCTGGGTTTATAAGTCTCAC 57.679 43.478 0.00 0.00 0.00 3.51
720 721 5.105473 CCTTCGTCTGGGTTTATAAGTCTCA 60.105 44.000 0.00 0.00 0.00 3.27
721 722 5.126707 TCCTTCGTCTGGGTTTATAAGTCTC 59.873 44.000 0.00 0.00 0.00 3.36
722 723 5.021458 TCCTTCGTCTGGGTTTATAAGTCT 58.979 41.667 0.00 0.00 0.00 3.24
723 724 5.334724 TCCTTCGTCTGGGTTTATAAGTC 57.665 43.478 0.00 0.00 0.00 3.01
724 725 5.750352 TTCCTTCGTCTGGGTTTATAAGT 57.250 39.130 0.00 0.00 0.00 2.24
725 726 8.774586 CATATTTCCTTCGTCTGGGTTTATAAG 58.225 37.037 0.00 0.00 0.00 1.73
726 727 8.487848 TCATATTTCCTTCGTCTGGGTTTATAA 58.512 33.333 0.00 0.00 0.00 0.98
727 728 8.025270 TCATATTTCCTTCGTCTGGGTTTATA 57.975 34.615 0.00 0.00 0.00 0.98
728 729 6.895782 TCATATTTCCTTCGTCTGGGTTTAT 58.104 36.000 0.00 0.00 0.00 1.40
729 730 6.302535 TCATATTTCCTTCGTCTGGGTTTA 57.697 37.500 0.00 0.00 0.00 2.01
730 731 5.174037 TCATATTTCCTTCGTCTGGGTTT 57.826 39.130 0.00 0.00 0.00 3.27
731 732 4.837093 TCATATTTCCTTCGTCTGGGTT 57.163 40.909 0.00 0.00 0.00 4.11
732 733 4.837093 TTCATATTTCCTTCGTCTGGGT 57.163 40.909 0.00 0.00 0.00 4.51
733 734 4.035675 GCTTTCATATTTCCTTCGTCTGGG 59.964 45.833 0.00 0.00 0.00 4.45
734 735 4.635765 TGCTTTCATATTTCCTTCGTCTGG 59.364 41.667 0.00 0.00 0.00 3.86
735 736 5.801350 TGCTTTCATATTTCCTTCGTCTG 57.199 39.130 0.00 0.00 0.00 3.51
736 737 7.396540 AAATGCTTTCATATTTCCTTCGTCT 57.603 32.000 0.00 0.00 31.46 4.18
737 738 8.466086 AAAAATGCTTTCATATTTCCTTCGTC 57.534 30.769 0.00 0.00 31.46 4.20
792 793 9.574516 ACACCTTGACAGACTTTCTTAAATAAT 57.425 29.630 0.00 0.00 0.00 1.28
793 794 8.836413 CACACCTTGACAGACTTTCTTAAATAA 58.164 33.333 0.00 0.00 0.00 1.40
794 795 7.041372 GCACACCTTGACAGACTTTCTTAAATA 60.041 37.037 0.00 0.00 0.00 1.40
795 796 6.238759 GCACACCTTGACAGACTTTCTTAAAT 60.239 38.462 0.00 0.00 0.00 1.40
796 797 5.065988 GCACACCTTGACAGACTTTCTTAAA 59.934 40.000 0.00 0.00 0.00 1.52
797 798 4.574828 GCACACCTTGACAGACTTTCTTAA 59.425 41.667 0.00 0.00 0.00 1.85
798 799 4.127171 GCACACCTTGACAGACTTTCTTA 58.873 43.478 0.00 0.00 0.00 2.10
799 800 2.945668 GCACACCTTGACAGACTTTCTT 59.054 45.455 0.00 0.00 0.00 2.52
832 833 3.614698 TTTGGGCTTGCGCAAGGG 61.615 61.111 41.83 25.44 38.80 3.95
869 870 1.152922 AAAAAGCGGTTGGGGTCGA 60.153 52.632 0.00 0.00 0.00 4.20
886 890 1.590147 GACGGCGAGAAAGGGAGAA 59.410 57.895 16.62 0.00 0.00 2.87
1053 1059 2.812609 TCGGAGTCGTCCTCGTCG 60.813 66.667 0.00 0.00 41.34 5.12
1055 1061 3.117171 CGTCGGAGTCGTCCTCGT 61.117 66.667 0.00 0.00 41.34 4.18
1059 1065 3.081159 CTCGTCGTCGGAGTCGTCC 62.081 68.421 1.55 0.00 40.43 4.79
1062 1068 3.862402 CCCTCGTCGTCGGAGTCG 61.862 72.222 1.55 0.00 41.01 4.18
1063 1069 4.176851 GCCCTCGTCGTCGGAGTC 62.177 72.222 1.55 0.00 37.69 3.36
1131 1137 2.838637 TCTCCTCCTCTTCCTCTTCC 57.161 55.000 0.00 0.00 0.00 3.46
1134 1140 2.177669 CTCCATCTCCTCCTCTTCCTCT 59.822 54.545 0.00 0.00 0.00 3.69
1170 1176 2.693017 GCCTCCTCCTCCTCCTCA 59.307 66.667 0.00 0.00 0.00 3.86
1353 1364 1.031571 GGGAAATCATGGACAGCGCA 61.032 55.000 11.47 0.00 0.00 6.09
1373 1384 8.488651 AAATCTCGGAAATACACGTTCTTTAT 57.511 30.769 0.00 0.00 0.00 1.40
1445 1469 0.676151 GCCCCTGCTCTGAACTGAAG 60.676 60.000 0.00 0.00 33.53 3.02
1471 1495 0.900647 CACGCTAGGGGATAGGGGAG 60.901 65.000 11.95 0.00 46.19 4.30
1472 1496 1.155390 CACGCTAGGGGATAGGGGA 59.845 63.158 11.95 0.00 46.19 4.81
1473 1497 1.152312 ACACGCTAGGGGATAGGGG 60.152 63.158 11.95 0.00 46.19 4.79
1475 1499 1.367840 GCACACGCTAGGGGATAGG 59.632 63.158 11.95 0.00 34.30 2.57
1476 1500 1.007271 CGCACACGCTAGGGGATAG 60.007 63.158 11.95 0.95 35.30 2.08
1477 1501 2.495409 CCGCACACGCTAGGGGATA 61.495 63.158 11.95 0.00 40.00 2.59
1478 1502 3.849951 CCGCACACGCTAGGGGAT 61.850 66.667 11.95 0.00 40.00 3.85
1485 1509 2.281484 ATTTCCACCGCACACGCT 60.281 55.556 0.00 0.00 38.22 5.07
1490 1514 2.568090 CAGCCATTTCCACCGCAC 59.432 61.111 0.00 0.00 0.00 5.34
1494 1518 1.304381 TGGAGCAGCCATTTCCACC 60.304 57.895 0.00 0.00 43.33 4.61
1510 1534 4.073293 AGTCCTACTAAATGCGGAATGG 57.927 45.455 0.00 0.00 0.00 3.16
1516 1540 9.141400 GATCCTAAATTAGTCCTACTAAATGCG 57.859 37.037 3.80 0.00 43.16 4.73
1524 1548 5.567025 CGGGCAGATCCTAAATTAGTCCTAC 60.567 48.000 0.00 0.00 34.39 3.18
1548 1572 1.749634 AGCTTGAAATGATGCTGGAGC 59.250 47.619 0.00 0.00 42.50 4.70
1598 1629 7.251704 ACACTGACATAAAAAGTTCAGACAG 57.748 36.000 4.51 0.00 0.00 3.51
1632 1668 7.369803 ACAGAGCACACATCAAAATTACTAG 57.630 36.000 0.00 0.00 0.00 2.57
1692 1728 2.045926 CCCTTGAACCCTGCCTCG 60.046 66.667 0.00 0.00 0.00 4.63
1839 1875 8.778358 AGTTTCTAACTCAGCAACTCAAATTAG 58.222 33.333 0.00 0.00 36.14 1.73
1852 1888 8.138712 GGGATATACTGTCAGTTTCTAACTCAG 58.861 40.741 11.54 6.69 40.46 3.35
1853 1889 7.618117 TGGGATATACTGTCAGTTTCTAACTCA 59.382 37.037 11.54 3.69 40.46 3.41
1864 1900 5.830457 TCTTCTCACTGGGATATACTGTCAG 59.170 44.000 0.00 0.00 0.00 3.51
1867 1903 5.144100 CCTCTTCTCACTGGGATATACTGT 58.856 45.833 0.00 0.00 0.00 3.55
1911 1947 7.620880 ACACAAGGAAGCACTAATTCATACTA 58.379 34.615 0.00 0.00 0.00 1.82
1912 1948 6.476378 ACACAAGGAAGCACTAATTCATACT 58.524 36.000 0.00 0.00 0.00 2.12
1913 1949 6.743575 ACACAAGGAAGCACTAATTCATAC 57.256 37.500 0.00 0.00 0.00 2.39
1925 1961 2.160417 GTGAGCATGTACACAAGGAAGC 59.840 50.000 15.65 0.00 37.05 3.86
1991 2034 6.936900 CCTCTTGTCTCAATAGAAGTGGAAAA 59.063 38.462 0.00 0.00 29.96 2.29
2028 2071 2.290641 GTGGCGGTTCATCAATACCATC 59.709 50.000 0.00 0.00 33.94 3.51
2053 2096 3.058450 CCGCAGATGCATTTGAAAACAA 58.942 40.909 20.67 0.00 42.21 2.83
2055 2098 2.663119 GTCCGCAGATGCATTTGAAAAC 59.337 45.455 20.67 10.21 42.21 2.43
2061 2104 0.322816 ACCTGTCCGCAGATGCATTT 60.323 50.000 0.00 0.00 45.28 2.32
2062 2105 1.028330 CACCTGTCCGCAGATGCATT 61.028 55.000 0.00 0.00 45.28 3.56
2066 2109 0.036952 AAGACACCTGTCCGCAGATG 60.037 55.000 1.66 0.00 45.85 2.90
2073 2116 5.662674 ACAGTTATCTAAGACACCTGTCC 57.337 43.478 1.66 0.00 45.85 4.02
2085 2128 8.836413 CAAACAGTCAAAGGAAACAGTTATCTA 58.164 33.333 0.00 0.00 0.00 1.98
2086 2129 7.556275 TCAAACAGTCAAAGGAAACAGTTATCT 59.444 33.333 0.00 0.00 0.00 1.98
2091 2134 4.764823 TGTCAAACAGTCAAAGGAAACAGT 59.235 37.500 0.00 0.00 0.00 3.55
2130 2173 9.121517 CATGTCAAGCTTTCAGTTACTAAAATG 57.878 33.333 0.00 0.00 31.98 2.32
2131 2174 8.299570 CCATGTCAAGCTTTCAGTTACTAAAAT 58.700 33.333 0.00 0.00 0.00 1.82
2132 2175 7.500892 TCCATGTCAAGCTTTCAGTTACTAAAA 59.499 33.333 0.00 0.00 0.00 1.52
2133 2176 6.995686 TCCATGTCAAGCTTTCAGTTACTAAA 59.004 34.615 0.00 0.00 0.00 1.85
2134 2177 6.530120 TCCATGTCAAGCTTTCAGTTACTAA 58.470 36.000 0.00 0.00 0.00 2.24
2136 2179 4.973168 TCCATGTCAAGCTTTCAGTTACT 58.027 39.130 0.00 0.00 0.00 2.24
2137 2180 5.392380 CCATCCATGTCAAGCTTTCAGTTAC 60.392 44.000 0.00 0.00 0.00 2.50
2138 2181 4.701651 CCATCCATGTCAAGCTTTCAGTTA 59.298 41.667 0.00 0.00 0.00 2.24
2139 2182 3.508793 CCATCCATGTCAAGCTTTCAGTT 59.491 43.478 0.00 0.00 0.00 3.16
2140 2183 3.087031 CCATCCATGTCAAGCTTTCAGT 58.913 45.455 0.00 0.00 0.00 3.41
2141 2184 3.349927 TCCATCCATGTCAAGCTTTCAG 58.650 45.455 0.00 0.00 0.00 3.02
2185 2230 1.696988 GCAAACGGCGAAAACATCAT 58.303 45.000 16.62 0.00 0.00 2.45
2311 2356 5.614324 TCTTTCCTTTCACTTGACTCTGA 57.386 39.130 0.00 0.00 0.00 3.27
2329 2374 1.278985 TCACGCACCATGGAGATCTTT 59.721 47.619 21.47 0.00 0.00 2.52
2606 2651 8.986991 ACTTATATGGAATTAAATGGCCAACAA 58.013 29.630 10.96 4.23 33.51 2.83
2625 2670 6.841601 ACCTGCAATGTGACCATACTTATAT 58.158 36.000 0.00 0.00 0.00 0.86
2627 2672 5.116084 ACCTGCAATGTGACCATACTTAT 57.884 39.130 0.00 0.00 0.00 1.73
2654 2699 7.462571 AACAAAGGAATTTTTAGTCGCCTAT 57.537 32.000 0.00 0.00 0.00 2.57
2659 2704 9.083080 ACAGAAAAACAAAGGAATTTTTAGTCG 57.917 29.630 0.00 0.00 37.96 4.18
2676 2724 5.109210 CCCTTTCTTTGTGGACAGAAAAAC 58.891 41.667 0.00 0.00 38.30 2.43
2684 2732 3.141767 AGTAGCCCTTTCTTTGTGGAC 57.858 47.619 0.00 0.00 0.00 4.02
2687 2735 3.010420 GCCTAGTAGCCCTTTCTTTGTG 58.990 50.000 0.00 0.00 0.00 3.33
2688 2736 2.642807 TGCCTAGTAGCCCTTTCTTTGT 59.357 45.455 0.00 0.00 0.00 2.83
2689 2737 3.350219 TGCCTAGTAGCCCTTTCTTTG 57.650 47.619 0.00 0.00 0.00 2.77
2690 2738 3.783082 AGATGCCTAGTAGCCCTTTCTTT 59.217 43.478 0.00 0.00 0.00 2.52
2691 2739 3.135530 CAGATGCCTAGTAGCCCTTTCTT 59.864 47.826 0.00 0.00 0.00 2.52
2711 2759 6.543465 TCTCATGCAACTTAACATAATCCCAG 59.457 38.462 0.00 0.00 0.00 4.45
2817 2866 7.564660 AGTTGCCATATTTCATCCTTGGATAAA 59.435 33.333 1.37 4.77 0.00 1.40
2865 2914 1.352017 ACTCCATCATTGGCAGTGTCA 59.648 47.619 9.95 0.00 43.29 3.58
2871 2920 3.136260 TGTATAGCACTCCATCATTGGCA 59.864 43.478 0.00 0.00 43.29 4.92
2947 2996 3.428452 GGGTTTAGATTTAACAAGGGCGC 60.428 47.826 0.00 0.00 0.00 6.53
2973 3022 3.528532 GGGATAACTTACACTCCAACCG 58.471 50.000 0.00 0.00 0.00 4.44
3081 3161 1.577468 TGTTCACCTAACACAGCACG 58.423 50.000 0.00 0.00 43.22 5.34
3122 3204 3.647590 AGCCCAAAGTGGATGTGAAAAAT 59.352 39.130 0.00 0.00 40.96 1.82
3128 3210 1.619654 TCAAGCCCAAAGTGGATGTG 58.380 50.000 0.00 0.00 40.96 3.21
3129 3211 2.610438 ATCAAGCCCAAAGTGGATGT 57.390 45.000 0.00 0.00 40.96 3.06
3545 3627 5.200368 TCGCATGCAAGATACTCTGATAA 57.800 39.130 19.57 0.00 0.00 1.75
3565 3647 5.742453 ACGTGTAAAACAGACATATAGCTCG 59.258 40.000 0.00 0.00 0.00 5.03
3566 3648 7.521509 AACGTGTAAAACAGACATATAGCTC 57.478 36.000 0.00 0.00 0.00 4.09
3588 3670 7.169982 CCGTCTATCCAATCTGTGAGAATTAAC 59.830 40.741 0.00 0.00 0.00 2.01
3598 3680 2.651455 TCGACCGTCTATCCAATCTGT 58.349 47.619 0.00 0.00 0.00 3.41
3734 3816 0.036448 ATGCAGAGCAGAGCACACTT 59.964 50.000 0.00 0.00 43.65 3.16
3802 3889 4.553330 AATACGGGCCTATAATCACAGG 57.447 45.455 0.84 0.00 34.85 4.00
3811 3898 3.253220 TGTATCCCAAATACGGGCCTAT 58.747 45.455 0.84 0.00 46.92 2.57
4003 4090 3.557577 TTGAAATCATGGCTGTGAACG 57.442 42.857 0.00 0.00 0.00 3.95
4048 4135 1.354368 TGAACCTTTGGATCCCACTCC 59.646 52.381 9.90 0.00 30.78 3.85
4125 4221 4.207019 GCGTATCAAAATTGGCATGTTAGC 59.793 41.667 0.00 0.00 0.00 3.09
4126 4222 5.339177 TGCGTATCAAAATTGGCATGTTAG 58.661 37.500 0.00 0.00 0.00 2.34
4127 4223 5.316327 TGCGTATCAAAATTGGCATGTTA 57.684 34.783 0.00 0.00 0.00 2.41
4138 4234 7.061673 GCAGAACATTAACATTGCGTATCAAAA 59.938 33.333 0.00 0.00 38.34 2.44
4146 4242 3.119884 TCCTGCAGAACATTAACATTGCG 60.120 43.478 17.39 0.00 34.44 4.85
4148 4244 7.765307 AGTAATCCTGCAGAACATTAACATTG 58.235 34.615 17.39 0.00 0.00 2.82
4156 4252 5.426689 TTCTGAGTAATCCTGCAGAACAT 57.573 39.130 17.39 0.64 41.08 2.71
4190 4286 6.590292 AGTTCTCACTTATGTAACGACCAATG 59.410 38.462 0.00 0.00 31.90 2.82
4211 4307 3.073274 AGAGCAACCCCATTGTAGTTC 57.927 47.619 0.00 0.00 40.77 3.01
4235 4331 4.535781 TGGTGTCTATGAAATCAATGGGG 58.464 43.478 0.00 0.00 0.00 4.96
4262 4358 2.607750 TCGGCCAGAAGCTTCCCT 60.608 61.111 22.81 2.23 43.05 4.20
4292 4388 3.111484 TGGGCTGATAGTGGTTATGTCA 58.889 45.455 0.00 0.00 0.00 3.58
4340 4436 0.749649 AGCTTCCTGTCGCTAGGATG 59.250 55.000 8.09 10.91 45.85 3.51
4349 4445 2.093921 GGTCTACCTTGAGCTTCCTGTC 60.094 54.545 0.00 0.00 0.00 3.51
4391 4487 6.123045 TCGTCCACTGGTAGATAGATATGA 57.877 41.667 0.00 0.00 0.00 2.15
4419 4515 2.701951 ACAGAACCCCGTAAGAGTGAAA 59.298 45.455 0.00 0.00 43.02 2.69
4425 4521 1.553248 CATGGACAGAACCCCGTAAGA 59.447 52.381 0.00 0.00 43.02 2.10
4432 4528 0.678048 GACCTGCATGGACAGAACCC 60.678 60.000 8.91 0.00 40.25 4.11
4473 4569 0.178068 CCGTGGGATCGACCTCATTT 59.822 55.000 0.00 0.00 38.98 2.32
4479 4575 1.035932 TCTCTTCCGTGGGATCGACC 61.036 60.000 0.00 0.00 38.08 4.79
4480 4576 0.382515 CTCTCTTCCGTGGGATCGAC 59.617 60.000 0.00 0.00 0.00 4.20
4760 4858 4.104066 GTGTTAAGCTAGGACTAAGACGC 58.896 47.826 0.00 0.00 0.00 5.19
4865 4963 2.639286 CACAAGGCTTCGGCACAC 59.361 61.111 0.00 0.00 43.96 3.82
4871 4969 2.550978 CCATAGTACCACAAGGCTTCG 58.449 52.381 0.00 0.00 39.06 3.79
4967 5065 8.869986 AGCATATATATACAGATTTACCCCCA 57.130 34.615 0.00 0.00 0.00 4.96
5028 5128 6.312399 TGATCAGTAACTTGCGTTTGAAAT 57.688 33.333 0.00 0.00 34.59 2.17
5037 5137 2.615912 GGGCAGATGATCAGTAACTTGC 59.384 50.000 0.09 4.66 0.00 4.01
5053 5153 2.783135 ACACTGAAACACATAGGGCAG 58.217 47.619 0.00 0.00 0.00 4.85
5078 5209 5.151297 TGAAACACATAGAGCAGATGACA 57.849 39.130 0.10 0.00 0.00 3.58
5079 5210 5.063186 CACTGAAACACATAGAGCAGATGAC 59.937 44.000 0.00 0.00 0.00 3.06
5080 5211 5.173664 CACTGAAACACATAGAGCAGATGA 58.826 41.667 0.00 0.00 0.00 2.92
5081 5212 4.934001 ACACTGAAACACATAGAGCAGATG 59.066 41.667 0.00 0.00 0.00 2.90
5082 5213 5.157940 ACACTGAAACACATAGAGCAGAT 57.842 39.130 0.00 0.00 0.00 2.90
5083 5214 4.607293 ACACTGAAACACATAGAGCAGA 57.393 40.909 0.00 0.00 0.00 4.26
5084 5215 4.143242 CGAACACTGAAACACATAGAGCAG 60.143 45.833 0.00 0.00 0.00 4.24
5085 5216 3.740832 CGAACACTGAAACACATAGAGCA 59.259 43.478 0.00 0.00 0.00 4.26
5086 5217 3.741344 ACGAACACTGAAACACATAGAGC 59.259 43.478 0.00 0.00 0.00 4.09
5087 5218 5.234329 ACAACGAACACTGAAACACATAGAG 59.766 40.000 0.00 0.00 0.00 2.43
5088 5219 5.113383 ACAACGAACACTGAAACACATAGA 58.887 37.500 0.00 0.00 0.00 1.98
5089 5220 5.234329 AGACAACGAACACTGAAACACATAG 59.766 40.000 0.00 0.00 0.00 2.23
5090 5221 5.006261 CAGACAACGAACACTGAAACACATA 59.994 40.000 0.00 0.00 32.90 2.29
5091 5222 3.938963 AGACAACGAACACTGAAACACAT 59.061 39.130 0.00 0.00 0.00 3.21
5092 5223 3.124466 CAGACAACGAACACTGAAACACA 59.876 43.478 0.00 0.00 32.90 3.72
5093 5224 3.670203 CAGACAACGAACACTGAAACAC 58.330 45.455 0.00 0.00 32.90 3.32
5094 5225 2.095213 GCAGACAACGAACACTGAAACA 59.905 45.455 0.00 0.00 32.90 2.83
5095 5226 2.351726 AGCAGACAACGAACACTGAAAC 59.648 45.455 0.00 0.00 32.90 2.78
5096 5227 2.627945 AGCAGACAACGAACACTGAAA 58.372 42.857 0.00 0.00 32.90 2.69
5097 5228 2.309528 AGCAGACAACGAACACTGAA 57.690 45.000 0.00 0.00 32.90 3.02
5098 5229 2.159099 AGAAGCAGACAACGAACACTGA 60.159 45.455 0.00 0.00 32.90 3.41
5099 5230 2.205074 AGAAGCAGACAACGAACACTG 58.795 47.619 0.00 0.00 0.00 3.66
5100 5231 2.604046 AGAAGCAGACAACGAACACT 57.396 45.000 0.00 0.00 0.00 3.55
5101 5232 2.351726 ACAAGAAGCAGACAACGAACAC 59.648 45.455 0.00 0.00 0.00 3.32
5102 5233 2.607635 GACAAGAAGCAGACAACGAACA 59.392 45.455 0.00 0.00 0.00 3.18
5103 5234 2.032808 GGACAAGAAGCAGACAACGAAC 60.033 50.000 0.00 0.00 0.00 3.95
5104 5235 2.210116 GGACAAGAAGCAGACAACGAA 58.790 47.619 0.00 0.00 0.00 3.85
5105 5236 1.138069 TGGACAAGAAGCAGACAACGA 59.862 47.619 0.00 0.00 0.00 3.85
5106 5237 1.581934 TGGACAAGAAGCAGACAACG 58.418 50.000 0.00 0.00 0.00 4.10
5107 5238 3.141398 TCATGGACAAGAAGCAGACAAC 58.859 45.455 0.00 0.00 0.00 3.32
5108 5239 3.490439 TCATGGACAAGAAGCAGACAA 57.510 42.857 0.00 0.00 0.00 3.18
5164 5295 9.463443 CAAGTTGCTATATTAGGTTATTTTGCC 57.537 33.333 0.00 0.00 0.00 4.52
5170 5301 9.338622 GTTGTCCAAGTTGCTATATTAGGTTAT 57.661 33.333 0.00 0.00 0.00 1.89
5175 5306 7.334421 ACACTGTTGTCCAAGTTGCTATATTAG 59.666 37.037 0.00 0.00 0.00 1.73
5176 5307 7.165485 ACACTGTTGTCCAAGTTGCTATATTA 58.835 34.615 0.00 0.00 0.00 0.98
5178 5309 5.560724 ACACTGTTGTCCAAGTTGCTATAT 58.439 37.500 0.00 0.00 0.00 0.86
5234 5366 2.532250 ATTGGTGGATTTCTGACCCC 57.468 50.000 0.00 0.00 0.00 4.95
5279 5411 6.478588 CAGAAATTCACGGTTAATCTAGCAC 58.521 40.000 0.00 0.00 0.00 4.40
5314 5446 2.477375 GCATGTGGCTCAATGTTTTGTG 59.523 45.455 0.00 0.00 40.25 3.33
5358 5491 5.472137 TGTTTGGTGAGCTAGTAAACAATCC 59.528 40.000 12.72 0.00 38.03 3.01
5380 5513 4.847198 TCAAAGCATGTGATGGTAGATGT 58.153 39.130 0.00 0.00 40.65 3.06
5393 5526 2.287788 ACAAACCGAAGCTCAAAGCATG 60.288 45.455 1.29 0.00 45.56 4.06
5395 5528 1.333619 GACAAACCGAAGCTCAAAGCA 59.666 47.619 1.29 0.00 45.56 3.91
5408 5541 1.015868 TTCCAACCGAACGACAAACC 58.984 50.000 0.00 0.00 0.00 3.27
5462 5596 2.037772 AGGTGTGAGACAACAGATGGAC 59.962 50.000 0.00 0.00 38.55 4.02
5569 5703 5.068855 TGGATTTGCTGACTTCATCAAACAA 59.931 36.000 9.74 0.00 42.39 2.83
5636 5770 2.859273 AATCGGCTGAAGCAGGACGG 62.859 60.000 0.00 0.00 44.36 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.