Multiple sequence alignment - TraesCS3B01G065900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G065900 chr3B 100.000 3416 0 0 1 3416 39439975 39443390 0.000000e+00 6309.0
1 TraesCS3B01G065900 chr3B 85.000 1580 211 9 844 2418 39451697 39453255 0.000000e+00 1581.0
2 TraesCS3B01G065900 chr3B 97.203 143 4 0 2593 2735 497430255 497430397 3.410000e-60 243.0
3 TraesCS3B01G065900 chr3B 96.479 142 4 1 2593 2733 583394027 583394168 2.050000e-57 233.0
4 TraesCS3B01G065900 chr3B 85.057 174 17 8 434 607 141129528 141129364 5.860000e-38 169.0
5 TraesCS3B01G065900 chr3B 87.879 132 14 2 189 320 40227233 40227104 1.640000e-33 154.0
6 TraesCS3B01G065900 chr3D 93.164 2004 116 8 606 2592 22222877 22224876 0.000000e+00 2922.0
7 TraesCS3B01G065900 chr3D 85.165 2002 228 35 606 2550 22272150 22274139 0.000000e+00 1988.0
8 TraesCS3B01G065900 chr3D 90.643 342 28 4 2849 3187 22224948 22225288 5.200000e-123 451.0
9 TraesCS3B01G065900 chr3D 91.371 197 15 1 1 195 22220692 22220888 5.620000e-68 268.0
10 TraesCS3B01G065900 chr3D 85.774 239 19 4 3190 3414 22225377 22225614 4.410000e-59 239.0
11 TraesCS3B01G065900 chr3D 87.283 173 13 5 436 607 418215941 418216105 4.500000e-44 189.0
12 TraesCS3B01G065900 chr3D 86.111 180 17 5 428 607 516966196 516966367 1.620000e-43 187.0
13 TraesCS3B01G065900 chr3D 84.028 144 22 1 2593 2735 105890815 105890958 1.650000e-28 137.0
14 TraesCS3B01G065900 chr3D 90.110 91 5 4 2734 2824 22224870 22224956 7.750000e-22 115.0
15 TraesCS3B01G065900 chr3A 94.794 1652 81 4 891 2541 31847846 31849493 0.000000e+00 2569.0
16 TraesCS3B01G065900 chr3A 82.835 1171 131 23 606 1734 31963335 31962193 0.000000e+00 985.0
17 TraesCS3B01G065900 chr3A 93.241 503 32 2 2041 2542 31944339 31944840 0.000000e+00 739.0
18 TraesCS3B01G065900 chr3A 84.771 742 105 5 1817 2550 31962199 31961458 0.000000e+00 737.0
19 TraesCS3B01G065900 chr3A 95.000 380 19 0 1670 2049 31943794 31944173 6.310000e-167 597.0
20 TraesCS3B01G065900 chr3A 91.698 265 14 2 606 865 31847586 31847847 9.010000e-96 361.0
21 TraesCS3B01G065900 chr3A 83.102 361 54 3 2196 2549 31922690 31923050 4.250000e-84 322.0
22 TraesCS3B01G065900 chr3A 90.769 195 18 0 1 195 31845488 31845682 9.400000e-66 261.0
23 TraesCS3B01G065900 chr2A 81.325 1510 252 20 931 2417 105407320 105408822 0.000000e+00 1199.0
24 TraesCS3B01G065900 chr2A 90.083 121 11 1 191 311 75637245 75637126 4.560000e-34 156.0
25 TraesCS3B01G065900 chr2D 81.271 1511 256 16 931 2419 109554170 109555675 0.000000e+00 1197.0
26 TraesCS3B01G065900 chr2D 80.538 1449 251 18 992 2417 109030713 109032153 0.000000e+00 1085.0
27 TraesCS3B01G065900 chr2D 86.705 173 15 5 436 607 591946376 591946541 5.820000e-43 185.0
28 TraesCS3B01G065900 chr2D 90.678 118 10 1 194 311 531675974 531675858 4.560000e-34 156.0
29 TraesCS3B01G065900 chr5B 95.172 145 6 1 2593 2736 679046065 679045921 9.540000e-56 228.0
30 TraesCS3B01G065900 chr5B 100.000 30 0 0 1788 1817 53547739 53547710 4.760000e-04 56.5
31 TraesCS3B01G065900 chr4B 95.105 143 6 1 2593 2734 63457380 63457522 1.230000e-54 224.0
32 TraesCS3B01G065900 chr4B 84.000 175 18 10 436 608 406678157 406677991 3.530000e-35 159.0
33 TraesCS3B01G065900 chr5A 80.066 301 53 5 125 424 212223461 212223755 2.060000e-52 217.0
34 TraesCS3B01G065900 chr5A 89.552 134 11 2 187 320 513846594 513846724 2.110000e-37 167.0
35 TraesCS3B01G065900 chr7A 90.141 142 13 1 2593 2733 75020547 75020688 2.090000e-42 183.0
36 TraesCS3B01G065900 chr6D 87.425 167 11 5 443 607 453318303 453318145 2.090000e-42 183.0
37 TraesCS3B01G065900 chr5D 86.628 172 15 4 436 607 509543086 509542923 2.090000e-42 183.0
38 TraesCS3B01G065900 chr2B 84.884 172 18 4 436 607 43228725 43228888 2.110000e-37 167.0
39 TraesCS3B01G065900 chr2B 87.692 130 14 2 191 319 492089774 492089902 2.120000e-32 150.0
40 TraesCS3B01G065900 chr1D 84.302 172 18 5 436 607 363125452 363125290 3.530000e-35 159.0
41 TraesCS3B01G065900 chrUn 88.976 127 12 2 194 319 22143707 22143582 4.560000e-34 156.0
42 TraesCS3B01G065900 chr7B 87.050 139 14 4 181 316 383714752 383714615 1.640000e-33 154.0
43 TraesCS3B01G065900 chr7D 83.333 156 19 7 168 319 26400538 26400690 1.650000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G065900 chr3B 39439975 39443390 3415 False 6309.000000 6309 100.000000 1 3416 1 chr3B.!!$F1 3415
1 TraesCS3B01G065900 chr3B 39451697 39453255 1558 False 1581.000000 1581 85.000000 844 2418 1 chr3B.!!$F2 1574
2 TraesCS3B01G065900 chr3D 22272150 22274139 1989 False 1988.000000 1988 85.165000 606 2550 1 chr3D.!!$F1 1944
3 TraesCS3B01G065900 chr3D 22220692 22225614 4922 False 799.000000 2922 90.212400 1 3414 5 chr3D.!!$F5 3413
4 TraesCS3B01G065900 chr3A 31845488 31849493 4005 False 1063.666667 2569 92.420333 1 2541 3 chr3A.!!$F2 2540
5 TraesCS3B01G065900 chr3A 31961458 31963335 1877 True 861.000000 985 83.803000 606 2550 2 chr3A.!!$R1 1944
6 TraesCS3B01G065900 chr3A 31943794 31944840 1046 False 668.000000 739 94.120500 1670 2542 2 chr3A.!!$F3 872
7 TraesCS3B01G065900 chr2A 105407320 105408822 1502 False 1199.000000 1199 81.325000 931 2417 1 chr2A.!!$F1 1486
8 TraesCS3B01G065900 chr2D 109554170 109555675 1505 False 1197.000000 1197 81.271000 931 2419 1 chr2D.!!$F2 1488
9 TraesCS3B01G065900 chr2D 109030713 109032153 1440 False 1085.000000 1085 80.538000 992 2417 1 chr2D.!!$F1 1425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 2689 0.031515 ACGTATCTCCCCATGGGACA 60.032 55.0 33.62 17.04 46.17 4.02 F
963 3089 0.395312 AACCTACACTCCACAACCCG 59.605 55.0 0.00 0.00 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 3756 1.135094 AGATGCCCTGTGATCGGAAT 58.865 50.0 0.0 0.0 0.00 3.01 R
2883 5221 0.036010 CTCAGATTGGACAGCCGGTT 60.036 55.0 1.9 0.0 36.79 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.571653 TGATAGTTCTGGACAACTGGGG 59.428 50.000 0.00 0.00 37.20 4.96
68 69 0.034756 TGTTGGGATCACGTGTCCTG 59.965 55.000 25.91 0.96 36.00 3.86
74 75 2.416972 GGGATCACGTGTCCTGTAACTC 60.417 54.545 25.91 11.69 36.00 3.01
128 131 3.799281 ATGCCCCGTTGTGAAATTATG 57.201 42.857 0.00 0.00 0.00 1.90
133 136 3.130164 CCCCGTTGTGAAATTATGCATGA 59.870 43.478 10.16 0.00 0.00 3.07
188 191 8.758715 AGTACTTGTTGAAACGTATTGAAGTAC 58.241 33.333 18.27 18.27 39.11 2.73
206 209 7.376435 GAAGTACTATATACTTCCTCCGTCC 57.624 44.000 13.52 0.00 44.52 4.79
207 210 5.486526 AGTACTATATACTTCCTCCGTCCG 58.513 45.833 0.00 0.00 0.00 4.79
208 211 4.630644 ACTATATACTTCCTCCGTCCGA 57.369 45.455 0.00 0.00 0.00 4.55
209 212 4.577875 ACTATATACTTCCTCCGTCCGAG 58.422 47.826 0.00 0.00 38.46 4.63
210 213 3.784511 ATATACTTCCTCCGTCCGAGA 57.215 47.619 0.00 0.00 41.63 4.04
211 214 2.431954 ATACTTCCTCCGTCCGAGAA 57.568 50.000 0.00 0.00 41.63 2.87
212 215 2.431954 TACTTCCTCCGTCCGAGAAT 57.568 50.000 0.00 0.00 41.63 2.40
213 216 2.431954 ACTTCCTCCGTCCGAGAATA 57.568 50.000 0.00 0.00 41.63 1.75
214 217 2.022934 ACTTCCTCCGTCCGAGAATAC 58.977 52.381 0.00 0.00 41.63 1.89
215 218 2.299521 CTTCCTCCGTCCGAGAATACT 58.700 52.381 0.00 0.00 41.63 2.12
216 219 2.431954 TCCTCCGTCCGAGAATACTT 57.568 50.000 0.00 0.00 41.63 2.24
217 220 2.022195 TCCTCCGTCCGAGAATACTTG 58.978 52.381 0.00 0.00 41.63 3.16
218 221 1.749634 CCTCCGTCCGAGAATACTTGT 59.250 52.381 0.00 0.00 41.63 3.16
219 222 2.947652 CCTCCGTCCGAGAATACTTGTA 59.052 50.000 0.00 0.00 41.63 2.41
220 223 3.379372 CCTCCGTCCGAGAATACTTGTAA 59.621 47.826 0.00 0.00 41.63 2.41
221 224 4.497674 CCTCCGTCCGAGAATACTTGTAAG 60.498 50.000 0.00 0.00 41.63 2.34
222 225 4.264253 TCCGTCCGAGAATACTTGTAAGA 58.736 43.478 0.00 0.00 0.00 2.10
223 226 4.334759 TCCGTCCGAGAATACTTGTAAGAG 59.665 45.833 0.00 0.00 0.00 2.85
224 227 4.334759 CCGTCCGAGAATACTTGTAAGAGA 59.665 45.833 0.00 0.00 0.00 3.10
225 228 5.163683 CCGTCCGAGAATACTTGTAAGAGAA 60.164 44.000 0.00 0.00 0.00 2.87
226 229 6.320171 CGTCCGAGAATACTTGTAAGAGAAA 58.680 40.000 0.00 0.00 0.00 2.52
227 230 6.973474 CGTCCGAGAATACTTGTAAGAGAAAT 59.027 38.462 0.00 0.00 0.00 2.17
228 231 7.043986 CGTCCGAGAATACTTGTAAGAGAAATG 60.044 40.741 0.00 0.00 0.00 2.32
229 232 7.222999 GTCCGAGAATACTTGTAAGAGAAATGG 59.777 40.741 0.00 0.00 0.00 3.16
230 233 7.123697 TCCGAGAATACTTGTAAGAGAAATGGA 59.876 37.037 0.00 0.00 0.00 3.41
231 234 7.928706 CCGAGAATACTTGTAAGAGAAATGGAT 59.071 37.037 0.00 0.00 0.00 3.41
232 235 8.759641 CGAGAATACTTGTAAGAGAAATGGATG 58.240 37.037 0.00 0.00 0.00 3.51
233 236 9.606631 GAGAATACTTGTAAGAGAAATGGATGT 57.393 33.333 0.00 0.00 0.00 3.06
306 309 5.902051 GATAAGTATTTTCGAACGGAGGG 57.098 43.478 0.00 0.00 0.00 4.30
307 310 3.967332 AAGTATTTTCGAACGGAGGGA 57.033 42.857 0.00 0.00 0.00 4.20
308 311 3.521947 AGTATTTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
324 327 6.183360 ACGGAGGGAGTATATGTTTAAGGAAC 60.183 42.308 0.00 0.00 38.78 3.62
409 415 8.269424 CACCGATAATTGAAAGAAACTAGATCG 58.731 37.037 0.00 0.00 33.93 3.69
436 442 7.782049 TGGTTAGATTACAACTCTGACTATGG 58.218 38.462 0.00 0.00 31.76 2.74
437 443 7.618117 TGGTTAGATTACAACTCTGACTATGGA 59.382 37.037 0.00 0.00 31.76 3.41
438 444 8.475639 GGTTAGATTACAACTCTGACTATGGAA 58.524 37.037 0.00 0.00 31.76 3.53
439 445 9.522804 GTTAGATTACAACTCTGACTATGGAAG 57.477 37.037 0.00 0.00 0.00 3.46
440 446 6.578023 AGATTACAACTCTGACTATGGAAGC 58.422 40.000 0.00 0.00 0.00 3.86
441 447 5.738619 TTACAACTCTGACTATGGAAGCA 57.261 39.130 0.00 0.00 0.00 3.91
442 448 4.199432 ACAACTCTGACTATGGAAGCAG 57.801 45.455 0.00 0.00 33.31 4.24
443 449 3.834813 ACAACTCTGACTATGGAAGCAGA 59.165 43.478 0.00 0.00 36.58 4.26
444 450 4.469227 ACAACTCTGACTATGGAAGCAGAT 59.531 41.667 0.00 0.00 37.57 2.90
445 451 5.046014 ACAACTCTGACTATGGAAGCAGATT 60.046 40.000 0.00 0.00 37.57 2.40
447 453 5.426504 ACTCTGACTATGGAAGCAGATTTG 58.573 41.667 0.00 0.00 37.57 2.32
448 454 5.046014 ACTCTGACTATGGAAGCAGATTTGT 60.046 40.000 0.00 0.00 37.57 2.83
450 456 6.577103 TCTGACTATGGAAGCAGATTTGTAG 58.423 40.000 0.00 0.00 35.08 2.74
453 459 4.878397 ACTATGGAAGCAGATTTGTAGCAC 59.122 41.667 0.00 0.00 0.00 4.40
454 460 2.436417 TGGAAGCAGATTTGTAGCACC 58.564 47.619 0.00 0.00 0.00 5.01
455 461 1.745653 GGAAGCAGATTTGTAGCACCC 59.254 52.381 0.00 0.00 0.00 4.61
456 462 1.398390 GAAGCAGATTTGTAGCACCCG 59.602 52.381 0.00 0.00 0.00 5.28
458 464 1.376609 GCAGATTTGTAGCACCCGGG 61.377 60.000 22.25 22.25 0.00 5.73
468 474 4.162690 CACCCGGGTGCTAGCTCC 62.163 72.222 39.44 24.68 39.39 4.70
469 475 4.715130 ACCCGGGTGCTAGCTCCA 62.715 66.667 31.19 3.53 0.00 3.86
470 476 4.162690 CCCGGGTGCTAGCTCCAC 62.163 72.222 31.19 21.01 0.00 4.02
471 477 3.390521 CCGGGTGCTAGCTCCACA 61.391 66.667 31.19 2.74 34.94 4.17
472 478 2.125512 CGGGTGCTAGCTCCACAC 60.126 66.667 31.19 15.75 34.94 3.82
474 480 2.269241 GGTGCTAGCTCCACACCC 59.731 66.667 27.04 7.55 46.65 4.61
475 481 2.269241 GTGCTAGCTCCACACCCC 59.731 66.667 17.23 0.00 33.50 4.95
476 482 2.122729 TGCTAGCTCCACACCCCT 59.877 61.111 17.23 0.00 0.00 4.79
483 671 3.925261 AGCTCCACACCCCTATACTAT 57.075 47.619 0.00 0.00 0.00 2.12
487 675 6.433441 AGCTCCACACCCCTATACTATATAC 58.567 44.000 0.00 0.00 0.00 1.47
488 676 6.011007 AGCTCCACACCCCTATACTATATACA 60.011 42.308 0.00 0.00 0.00 2.29
490 678 7.344871 GCTCCACACCCCTATACTATATACATT 59.655 40.741 0.00 0.00 0.00 2.71
521 709 6.976636 AAAAAGTGCCGAGAAATTTGAAAA 57.023 29.167 0.00 0.00 0.00 2.29
554 769 8.752005 TGAGATTTTAAGATATCAAACCTGGG 57.248 34.615 5.32 0.00 0.00 4.45
555 770 8.336235 TGAGATTTTAAGATATCAAACCTGGGT 58.664 33.333 5.32 0.00 0.00 4.51
556 771 9.190317 GAGATTTTAAGATATCAAACCTGGGTT 57.810 33.333 5.32 0.00 40.45 4.11
560 775 5.897377 AAGATATCAAACCTGGGTTTTCG 57.103 39.130 14.27 5.78 44.84 3.46
561 776 5.174037 AGATATCAAACCTGGGTTTTCGA 57.826 39.130 14.27 10.47 44.84 3.71
562 777 5.755849 AGATATCAAACCTGGGTTTTCGAT 58.244 37.500 14.27 15.73 44.84 3.59
563 778 5.823045 AGATATCAAACCTGGGTTTTCGATC 59.177 40.000 14.27 14.86 44.84 3.69
565 780 4.627284 TCAAACCTGGGTTTTCGATCTA 57.373 40.909 14.27 0.00 44.84 1.98
567 782 4.041198 TCAAACCTGGGTTTTCGATCTACT 59.959 41.667 14.27 0.00 44.84 2.57
568 783 3.889520 ACCTGGGTTTTCGATCTACTC 57.110 47.619 0.00 0.00 0.00 2.59
569 784 2.500504 ACCTGGGTTTTCGATCTACTCC 59.499 50.000 0.00 0.00 0.00 3.85
570 785 2.158943 CCTGGGTTTTCGATCTACTCCC 60.159 54.545 0.00 0.00 0.00 4.30
572 787 1.568606 GGTTTTCGATCTACTCCCGC 58.431 55.000 0.00 0.00 0.00 6.13
574 789 0.813184 TTTTCGATCTACTCCCGCGT 59.187 50.000 4.92 0.00 0.00 6.01
580 1637 2.798499 CGATCTACTCCCGCGTGAAATT 60.798 50.000 4.92 0.00 0.00 1.82
581 1638 2.754946 TCTACTCCCGCGTGAAATTT 57.245 45.000 4.92 0.00 0.00 1.82
589 1646 2.376956 CCGCGTGAAATTTCGTGAAAA 58.623 42.857 13.34 0.00 39.45 2.29
620 2689 0.031515 ACGTATCTCCCCATGGGACA 60.032 55.000 33.62 17.04 46.17 4.02
633 2702 1.948104 TGGGACATTAGCACATACGC 58.052 50.000 0.00 0.00 0.00 4.42
685 2754 3.759527 TGATGACGTCGTCCTTTCTAG 57.240 47.619 29.89 0.00 0.00 2.43
686 2755 3.079578 TGATGACGTCGTCCTTTCTAGT 58.920 45.455 29.89 0.00 0.00 2.57
687 2756 4.256110 TGATGACGTCGTCCTTTCTAGTA 58.744 43.478 29.89 9.52 0.00 1.82
692 2764 3.181499 ACGTCGTCCTTTCTAGTAGCATG 60.181 47.826 0.00 0.00 0.00 4.06
728 2800 9.346725 CATCGGATGATCACCATATATTATACG 57.653 37.037 12.67 0.00 35.17 3.06
762 2846 2.609747 TCCAGGTACTTTCTGTCTGCT 58.390 47.619 0.00 0.00 34.60 4.24
799 2909 1.483415 GGTTCGGTGCCCATTAGAGTA 59.517 52.381 0.00 0.00 0.00 2.59
842 2958 1.843851 TCCACCTAATAACCTGGGCAG 59.156 52.381 0.00 0.00 0.00 4.85
867 2987 0.835115 TTGCAATCCATGTTGGGCCA 60.835 50.000 0.00 0.00 38.32 5.36
884 3004 3.284617 GGCCACTATAAATGTCCGGTTT 58.715 45.455 0.00 0.00 0.00 3.27
963 3089 0.395312 AACCTACACTCCACAACCCG 59.605 55.000 0.00 0.00 0.00 5.28
1046 3179 2.427245 CGATCAGTCCCCGGAAGCT 61.427 63.158 0.73 0.00 0.00 3.74
1098 3231 1.407656 GGCACCTCGTCCCCATGATA 61.408 60.000 0.00 0.00 0.00 2.15
1164 3297 2.507854 CCTCATGGACCCGCCGTAT 61.508 63.158 0.00 0.00 40.66 3.06
1253 3386 2.360475 GCCACAGGTCAAGCTCCC 60.360 66.667 0.00 0.00 0.00 4.30
1254 3387 3.160585 CCACAGGTCAAGCTCCCA 58.839 61.111 0.00 0.00 0.00 4.37
1308 3441 3.319198 GCCCGTCTCTCCAACCCA 61.319 66.667 0.00 0.00 0.00 4.51
1316 3449 1.132977 TCTCTCCAACCCACACCTACA 60.133 52.381 0.00 0.00 0.00 2.74
1524 3657 3.081741 CGAAGAACTCGTGCACGTA 57.918 52.632 35.74 22.18 42.89 3.57
1623 3756 6.614694 TTACTAAATGTGAGCCTCAACCTA 57.385 37.500 0.00 0.00 0.00 3.08
1865 3998 4.697756 CAGCCTCGGCCGGTTCAA 62.698 66.667 27.83 3.84 43.17 2.69
1987 4140 1.251251 GGACTTGGATGTGCTGCTTT 58.749 50.000 0.00 0.00 0.00 3.51
2232 4559 3.038280 TGTCATGATGGAAGGGTACGAT 58.962 45.455 0.00 0.00 0.00 3.73
2376 4703 0.252881 AGGGTGGAGAATCAGAGGCA 60.253 55.000 0.00 0.00 36.25 4.75
2385 4712 2.143122 GAATCAGAGGCAACGTTGACA 58.857 47.619 34.30 15.61 39.18 3.58
2387 4714 0.750249 TCAGAGGCAACGTTGACAGA 59.250 50.000 34.30 24.75 39.18 3.41
2394 4721 1.064060 GCAACGTTGACAGAGCTTGTT 59.936 47.619 31.62 0.00 41.05 2.83
2399 4726 2.545526 CGTTGACAGAGCTTGTTGATGT 59.454 45.455 0.00 0.00 41.05 3.06
2481 4814 3.573967 AGCATTGGGTCTTAAAAGTGTGG 59.426 43.478 0.00 0.00 0.00 4.17
2494 4827 9.849166 TCTTAAAAGTGTGGTTTTAGTTTCTTG 57.151 29.630 0.00 0.00 34.25 3.02
2501 4834 6.482308 GTGTGGTTTTAGTTTCTTGCTCTCTA 59.518 38.462 0.00 0.00 0.00 2.43
2546 4879 9.330063 CACAATAGAGAAATTTCTATACTGCCA 57.670 33.333 23.89 7.09 39.00 4.92
2547 4880 9.331282 ACAATAGAGAAATTTCTATACTGCCAC 57.669 33.333 23.89 9.54 39.00 5.01
2548 4881 9.553064 CAATAGAGAAATTTCTATACTGCCACT 57.447 33.333 21.55 13.15 39.00 4.00
2549 4882 9.771534 AATAGAGAAATTTCTATACTGCCACTC 57.228 33.333 21.55 6.20 39.00 3.51
2550 4883 7.430760 AGAGAAATTTCTATACTGCCACTCT 57.569 36.000 20.51 6.53 37.73 3.24
2551 4884 7.856415 AGAGAAATTTCTATACTGCCACTCTT 58.144 34.615 20.51 0.00 37.73 2.85
2592 4930 4.908736 CCAAACTTGGTCGTATGCTTATG 58.091 43.478 0.00 0.00 43.43 1.90
2593 4931 4.342772 CAAACTTGGTCGTATGCTTATGC 58.657 43.478 0.00 0.00 40.20 3.14
2606 4944 3.138304 TGCTTATGCATCGGATTACACC 58.862 45.455 0.19 0.00 45.31 4.16
2607 4945 3.181455 TGCTTATGCATCGGATTACACCT 60.181 43.478 0.19 0.00 45.31 4.00
2608 4946 4.039852 TGCTTATGCATCGGATTACACCTA 59.960 41.667 0.19 0.00 45.31 3.08
2609 4947 4.627467 GCTTATGCATCGGATTACACCTAG 59.373 45.833 0.19 0.00 39.41 3.02
2610 4948 3.685139 ATGCATCGGATTACACCTAGG 57.315 47.619 7.41 7.41 0.00 3.02
2611 4949 1.691976 TGCATCGGATTACACCTAGGG 59.308 52.381 14.81 4.64 0.00 3.53
2612 4950 1.608283 GCATCGGATTACACCTAGGGC 60.608 57.143 14.81 0.00 0.00 5.19
2613 4951 1.971357 CATCGGATTACACCTAGGGCT 59.029 52.381 14.81 0.00 0.00 5.19
2614 4952 3.162666 CATCGGATTACACCTAGGGCTA 58.837 50.000 14.81 0.00 0.00 3.93
2615 4953 3.317455 TCGGATTACACCTAGGGCTAA 57.683 47.619 14.81 8.23 0.00 3.09
2616 4954 3.228453 TCGGATTACACCTAGGGCTAAG 58.772 50.000 14.81 0.00 0.00 2.18
2617 4955 2.963782 CGGATTACACCTAGGGCTAAGT 59.036 50.000 14.81 6.06 0.00 2.24
2618 4956 4.141181 TCGGATTACACCTAGGGCTAAGTA 60.141 45.833 14.81 5.09 0.00 2.24
2619 4957 4.022503 CGGATTACACCTAGGGCTAAGTAC 60.023 50.000 14.81 4.36 0.00 2.73
2620 4958 4.282957 GGATTACACCTAGGGCTAAGTACC 59.717 50.000 14.81 8.95 0.00 3.34
2621 4959 4.614967 TTACACCTAGGGCTAAGTACCT 57.385 45.455 14.81 0.00 40.89 3.08
2622 4960 3.486653 ACACCTAGGGCTAAGTACCTT 57.513 47.619 14.81 0.00 38.30 3.50
2623 4961 3.105283 ACACCTAGGGCTAAGTACCTTG 58.895 50.000 14.81 0.00 38.30 3.61
2624 4962 3.245875 ACACCTAGGGCTAAGTACCTTGA 60.246 47.826 14.81 0.00 38.30 3.02
2625 4963 3.773119 CACCTAGGGCTAAGTACCTTGAA 59.227 47.826 14.81 0.00 38.30 2.69
2626 4964 4.409247 CACCTAGGGCTAAGTACCTTGAAT 59.591 45.833 14.81 0.00 38.30 2.57
2627 4965 4.409247 ACCTAGGGCTAAGTACCTTGAATG 59.591 45.833 14.81 0.00 38.30 2.67
2628 4966 4.654262 CCTAGGGCTAAGTACCTTGAATGA 59.346 45.833 0.00 0.00 38.30 2.57
2629 4967 5.308237 CCTAGGGCTAAGTACCTTGAATGAT 59.692 44.000 0.00 0.00 38.30 2.45
2630 4968 5.041191 AGGGCTAAGTACCTTGAATGATG 57.959 43.478 0.00 0.00 31.68 3.07
2631 4969 3.565902 GGGCTAAGTACCTTGAATGATGC 59.434 47.826 0.00 0.00 0.00 3.91
2632 4970 4.199310 GGCTAAGTACCTTGAATGATGCA 58.801 43.478 0.00 0.00 0.00 3.96
2633 4971 4.035675 GGCTAAGTACCTTGAATGATGCAC 59.964 45.833 0.00 0.00 0.00 4.57
2634 4972 4.878397 GCTAAGTACCTTGAATGATGCACT 59.122 41.667 0.00 0.00 0.00 4.40
2635 4973 5.355350 GCTAAGTACCTTGAATGATGCACTT 59.645 40.000 0.00 0.00 0.00 3.16
2636 4974 6.127897 GCTAAGTACCTTGAATGATGCACTTT 60.128 38.462 0.00 0.00 0.00 2.66
2637 4975 5.633830 AGTACCTTGAATGATGCACTTTG 57.366 39.130 0.00 0.00 0.00 2.77
2638 4976 5.316167 AGTACCTTGAATGATGCACTTTGA 58.684 37.500 0.00 0.00 0.00 2.69
2639 4977 5.948162 AGTACCTTGAATGATGCACTTTGAT 59.052 36.000 0.00 0.00 0.00 2.57
2640 4978 5.068234 ACCTTGAATGATGCACTTTGATG 57.932 39.130 0.00 0.00 0.00 3.07
2641 4979 4.768448 ACCTTGAATGATGCACTTTGATGA 59.232 37.500 0.00 0.00 0.00 2.92
2642 4980 5.421056 ACCTTGAATGATGCACTTTGATGAT 59.579 36.000 0.00 0.00 0.00 2.45
2643 4981 6.070995 ACCTTGAATGATGCACTTTGATGATT 60.071 34.615 0.00 0.00 0.00 2.57
2644 4982 6.816640 CCTTGAATGATGCACTTTGATGATTT 59.183 34.615 0.00 0.00 0.00 2.17
2645 4983 7.333423 CCTTGAATGATGCACTTTGATGATTTT 59.667 33.333 0.00 0.00 0.00 1.82
2646 4984 8.610248 TTGAATGATGCACTTTGATGATTTTT 57.390 26.923 0.00 0.00 0.00 1.94
2684 5022 8.664211 AGAAGAAATTATAAGGGTCATCGTTC 57.336 34.615 0.00 0.00 0.00 3.95
2685 5023 7.715686 AGAAGAAATTATAAGGGTCATCGTTCC 59.284 37.037 0.00 0.00 0.00 3.62
2686 5024 7.138054 AGAAATTATAAGGGTCATCGTTCCT 57.862 36.000 0.00 0.00 0.00 3.36
2687 5025 8.258850 AGAAATTATAAGGGTCATCGTTCCTA 57.741 34.615 0.00 0.00 0.00 2.94
2688 5026 8.711170 AGAAATTATAAGGGTCATCGTTCCTAA 58.289 33.333 0.00 0.00 0.00 2.69
2689 5027 8.904099 AAATTATAAGGGTCATCGTTCCTAAG 57.096 34.615 0.00 0.00 0.00 2.18
2690 5028 2.693267 AAGGGTCATCGTTCCTAAGC 57.307 50.000 0.00 0.00 0.00 3.09
2691 5029 0.831307 AGGGTCATCGTTCCTAAGCC 59.169 55.000 0.00 0.00 0.00 4.35
2692 5030 0.831307 GGGTCATCGTTCCTAAGCCT 59.169 55.000 0.00 0.00 0.00 4.58
2693 5031 2.037144 GGGTCATCGTTCCTAAGCCTA 58.963 52.381 0.00 0.00 0.00 3.93
2694 5032 2.036089 GGGTCATCGTTCCTAAGCCTAG 59.964 54.545 0.00 0.00 0.00 3.02
2695 5033 2.957006 GGTCATCGTTCCTAAGCCTAGA 59.043 50.000 0.00 0.00 0.00 2.43
2696 5034 3.004944 GGTCATCGTTCCTAAGCCTAGAG 59.995 52.174 0.00 0.00 0.00 2.43
2697 5035 2.623889 TCATCGTTCCTAAGCCTAGAGC 59.376 50.000 0.00 0.00 44.25 4.09
2709 5047 3.375647 GCCTAGAGCTATAGCCCTACT 57.624 52.381 21.17 16.32 43.38 2.57
2710 5048 3.703921 GCCTAGAGCTATAGCCCTACTT 58.296 50.000 21.17 0.91 43.38 2.24
2711 5049 3.445805 GCCTAGAGCTATAGCCCTACTTG 59.554 52.174 21.17 14.55 43.38 3.16
2712 5050 3.445805 CCTAGAGCTATAGCCCTACTTGC 59.554 52.174 21.17 1.43 43.38 4.01
2713 5051 2.252714 AGAGCTATAGCCCTACTTGCC 58.747 52.381 21.17 0.30 43.38 4.52
2714 5052 1.971357 GAGCTATAGCCCTACTTGCCA 59.029 52.381 21.17 0.00 43.38 4.92
2715 5053 2.569404 GAGCTATAGCCCTACTTGCCAT 59.431 50.000 21.17 0.00 43.38 4.40
2716 5054 3.769844 GAGCTATAGCCCTACTTGCCATA 59.230 47.826 21.17 0.00 43.38 2.74
2717 5055 3.772025 AGCTATAGCCCTACTTGCCATAG 59.228 47.826 21.17 0.00 43.38 2.23
2718 5056 3.118592 GCTATAGCCCTACTTGCCATAGG 60.119 52.174 14.13 0.00 39.25 2.57
2719 5057 6.723464 GCTATAGCCCTACTTGCCATAGGC 62.723 54.167 14.13 0.00 41.66 3.93
2729 5067 1.219393 GCCATAGGCCTATCTCCGC 59.781 63.158 22.98 16.72 44.06 5.54
2730 5068 1.901085 CCATAGGCCTATCTCCGCC 59.099 63.158 22.98 0.00 46.09 6.13
2734 5072 3.631046 GGCCTATCTCCGCCCCTG 61.631 72.222 0.00 0.00 39.39 4.45
2735 5073 4.321966 GCCTATCTCCGCCCCTGC 62.322 72.222 0.00 0.00 0.00 4.85
2736 5074 2.525381 CCTATCTCCGCCCCTGCT 60.525 66.667 0.00 0.00 34.43 4.24
2737 5075 2.143419 CCTATCTCCGCCCCTGCTT 61.143 63.158 0.00 0.00 34.43 3.91
2738 5076 0.832135 CCTATCTCCGCCCCTGCTTA 60.832 60.000 0.00 0.00 34.43 3.09
2739 5077 1.270907 CTATCTCCGCCCCTGCTTAT 58.729 55.000 0.00 0.00 34.43 1.73
2740 5078 2.457598 CTATCTCCGCCCCTGCTTATA 58.542 52.381 0.00 0.00 34.43 0.98
2741 5079 1.958288 ATCTCCGCCCCTGCTTATAT 58.042 50.000 0.00 0.00 34.43 0.86
2742 5080 0.976641 TCTCCGCCCCTGCTTATATG 59.023 55.000 0.00 0.00 34.43 1.78
2772 5110 9.699410 TCTCAAAATTTATATCCAGAACCATGT 57.301 29.630 0.00 0.00 0.00 3.21
2789 5127 9.236006 AGAACCATGTTAGGCATTTATCATATC 57.764 33.333 0.00 0.00 35.19 1.63
2806 5144 5.084519 TCATATCGGCTATCTTACCACCTT 58.915 41.667 0.00 0.00 0.00 3.50
2810 5148 2.409570 GGCTATCTTACCACCTTCCCT 58.590 52.381 0.00 0.00 0.00 4.20
2812 5150 2.369203 GCTATCTTACCACCTTCCCTCC 59.631 54.545 0.00 0.00 0.00 4.30
2813 5151 1.894699 ATCTTACCACCTTCCCTCCC 58.105 55.000 0.00 0.00 0.00 4.30
2821 5159 3.839432 CTTCCCTCCCCGCGAGTC 61.839 72.222 8.23 0.00 36.82 3.36
2822 5160 4.377760 TTCCCTCCCCGCGAGTCT 62.378 66.667 8.23 0.00 36.82 3.24
2823 5161 2.905935 CTTCCCTCCCCGCGAGTCTA 62.906 65.000 8.23 0.00 36.82 2.59
2824 5162 2.905935 TTCCCTCCCCGCGAGTCTAG 62.906 65.000 8.23 0.00 36.82 2.43
2825 5163 2.907917 CCTCCCCGCGAGTCTAGG 60.908 72.222 8.23 2.86 36.82 3.02
2826 5164 2.192443 CTCCCCGCGAGTCTAGGA 59.808 66.667 8.23 2.61 33.51 2.94
2827 5165 1.894756 CTCCCCGCGAGTCTAGGAG 60.895 68.421 8.23 9.19 38.32 3.69
2828 5166 2.907917 CCCCGCGAGTCTAGGAGG 60.908 72.222 8.23 0.00 0.00 4.30
2829 5167 2.124236 CCCGCGAGTCTAGGAGGT 60.124 66.667 8.23 0.00 0.00 3.85
2830 5168 2.188161 CCCGCGAGTCTAGGAGGTC 61.188 68.421 8.23 0.00 0.00 3.85
2831 5169 1.451567 CCGCGAGTCTAGGAGGTCA 60.452 63.158 8.23 0.00 0.00 4.02
2832 5170 1.030488 CCGCGAGTCTAGGAGGTCAA 61.030 60.000 8.23 0.00 0.00 3.18
2833 5171 0.809385 CGCGAGTCTAGGAGGTCAAA 59.191 55.000 0.00 0.00 0.00 2.69
2834 5172 1.201647 CGCGAGTCTAGGAGGTCAAAA 59.798 52.381 0.00 0.00 0.00 2.44
2835 5173 2.352421 CGCGAGTCTAGGAGGTCAAAAA 60.352 50.000 0.00 0.00 0.00 1.94
2869 5207 4.491676 TGACGTCTACTAAAAGATGTGGC 58.508 43.478 17.92 0.00 44.02 5.01
2870 5208 4.021807 TGACGTCTACTAAAAGATGTGGCA 60.022 41.667 17.92 0.00 44.02 4.92
2883 5221 3.890756 AGATGTGGCACATTTTGAACTCA 59.109 39.130 31.83 1.24 44.52 3.41
2891 5229 2.034558 ACATTTTGAACTCAACCGGCTG 59.965 45.455 0.00 0.00 35.28 4.85
2909 5247 2.167861 GTCCAATCTGAGCGGCGAC 61.168 63.158 12.98 4.01 0.00 5.19
2910 5248 2.125552 CCAATCTGAGCGGCGACA 60.126 61.111 12.98 9.21 0.00 4.35
2911 5249 2.169789 CCAATCTGAGCGGCGACAG 61.170 63.158 21.92 21.92 35.72 3.51
2912 5250 1.153765 CAATCTGAGCGGCGACAGA 60.154 57.895 28.41 28.41 45.19 3.41
2914 5252 0.176680 AATCTGAGCGGCGACAGAAT 59.823 50.000 29.34 22.63 44.47 2.40
2925 5264 2.416836 GGCGACAGAATTAAAAAGGCCC 60.417 50.000 0.00 0.00 32.02 5.80
2954 5293 2.354259 CACCAGTCAATCTGCTTCCTC 58.646 52.381 0.00 0.00 42.38 3.71
2956 5295 1.005340 CAGTCAATCTGCTTCCTCGC 58.995 55.000 0.00 0.00 37.36 5.03
2981 5320 4.662961 CGTGACACCGCTGCCAGA 62.663 66.667 0.00 0.00 0.00 3.86
2988 5327 3.052082 CCGCTGCCAGACTTGGTG 61.052 66.667 0.00 0.00 46.80 4.17
2997 5337 1.543429 CCAGACTTGGTGTCCCTTGTC 60.543 57.143 0.00 0.00 46.46 3.18
3035 5375 3.244105 CTCACCAAGGACAACGCG 58.756 61.111 3.53 3.53 0.00 6.01
3041 5381 2.049433 AAGGACAACGCGTCGAGG 60.049 61.111 14.44 5.33 46.42 4.63
3042 5382 4.719369 AGGACAACGCGTCGAGGC 62.719 66.667 19.79 19.79 46.42 4.70
3056 5396 3.071580 GAGGCCATCTCGTTCTTGG 57.928 57.895 5.01 0.00 32.18 3.61
3088 5428 2.595386 TCTCATGTGTGTGAATCGACG 58.405 47.619 0.00 0.00 0.00 5.12
3108 5448 2.315901 GGAACGCGTGAAAATTTCCAG 58.684 47.619 14.98 0.00 36.51 3.86
3122 5462 8.093927 TGAAAATTTCCAGGTGACCATTTAATC 58.906 33.333 3.63 0.00 0.00 1.75
3146 5486 4.084328 GCAAATGCGACTGGAGATATGTAC 60.084 45.833 0.00 0.00 0.00 2.90
3154 5494 4.708177 ACTGGAGATATGTACATGTTGCC 58.292 43.478 18.81 15.90 0.00 4.52
3163 5503 4.893829 TGTACATGTTGCCTACCACTAA 57.106 40.909 2.30 0.00 0.00 2.24
3168 5508 4.260985 CATGTTGCCTACCACTAATGTCA 58.739 43.478 0.00 0.00 0.00 3.58
3190 5530 4.983671 ACTAGTCGTTGATCATGTAGCA 57.016 40.909 0.00 0.00 0.00 3.49
3191 5531 4.926244 ACTAGTCGTTGATCATGTAGCAG 58.074 43.478 0.00 0.00 0.00 4.24
3192 5532 4.640647 ACTAGTCGTTGATCATGTAGCAGA 59.359 41.667 0.00 0.00 0.00 4.26
3194 5534 4.615949 AGTCGTTGATCATGTAGCAGATC 58.384 43.478 0.00 0.00 40.75 2.75
3206 5632 3.519510 TGTAGCAGATCCAAAGCCTAGTT 59.480 43.478 0.00 0.00 0.00 2.24
3231 5657 7.787623 AGATTTTTCTCAAATTGGTCATCCT 57.212 32.000 0.00 0.00 34.23 3.24
3243 5669 1.622725 GGTCATCCTACACCCCTGAGT 60.623 57.143 0.00 0.00 0.00 3.41
3246 5672 2.044492 TCATCCTACACCCCTGAGTCTT 59.956 50.000 0.00 0.00 0.00 3.01
3276 5702 2.352960 GTGAATGGAGAGAATTGACCGC 59.647 50.000 0.00 0.00 0.00 5.68
3310 5749 2.100087 GTGGTGTGTTTTTACCCAGTGG 59.900 50.000 0.63 0.63 36.10 4.00
3323 5762 2.290071 ACCCAGTGGACGATTTTAGTGG 60.290 50.000 11.95 0.00 34.20 4.00
3346 5785 6.213195 TGGCATCTTTGTATCCCTGAAATTTT 59.787 34.615 0.00 0.00 0.00 1.82
3350 5789 7.385778 TCTTTGTATCCCTGAAATTTTACCG 57.614 36.000 0.00 0.00 0.00 4.02
3365 5804 2.490217 CCGTGTGGGTAGCTCGAG 59.510 66.667 8.45 8.45 0.00 4.04
3370 5809 1.045407 TGTGGGTAGCTCGAGTGTTT 58.955 50.000 15.13 0.32 0.00 2.83
3371 5810 1.000506 TGTGGGTAGCTCGAGTGTTTC 59.999 52.381 15.13 2.49 0.00 2.78
3373 5812 0.896226 GGGTAGCTCGAGTGTTTCCT 59.104 55.000 15.13 3.72 0.00 3.36
3374 5813 2.097825 GGGTAGCTCGAGTGTTTCCTA 58.902 52.381 15.13 2.68 0.00 2.94
3375 5814 2.694109 GGGTAGCTCGAGTGTTTCCTAT 59.306 50.000 15.13 0.00 0.00 2.57
3392 5832 7.881232 TGTTTCCTATAAAAAGGATCAGTTCGT 59.119 33.333 0.00 0.00 45.14 3.85
3394 5834 8.937634 TTCCTATAAAAAGGATCAGTTCGTAC 57.062 34.615 0.00 0.00 45.14 3.67
3395 5835 8.302515 TCCTATAAAAAGGATCAGTTCGTACT 57.697 34.615 0.00 0.00 40.86 2.73
3396 5836 8.195436 TCCTATAAAAAGGATCAGTTCGTACTG 58.805 37.037 15.37 15.37 45.15 2.74
3405 5845 0.393077 AGTTCGTACTGCACAGGCTT 59.607 50.000 2.21 0.00 41.91 4.35
3414 5854 1.598130 GCACAGGCTTGTCCGAGTT 60.598 57.895 0.00 0.00 40.77 3.01
3415 5855 1.845809 GCACAGGCTTGTCCGAGTTG 61.846 60.000 0.00 0.00 40.77 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 7.872993 TCCAGAACTATCATTCAAATATCCGTC 59.127 37.037 0.00 0.00 0.00 4.79
46 47 1.369625 GACACGTGATCCCAACATCC 58.630 55.000 25.01 0.00 0.00 3.51
95 98 5.067283 ACAACGGGGCATTCTGAATATTAAC 59.933 40.000 1.98 0.00 0.00 2.01
105 108 1.923356 ATTTCACAACGGGGCATTCT 58.077 45.000 0.00 0.00 0.00 2.40
188 191 4.829968 TCTCGGACGGAGGAAGTATATAG 58.170 47.826 9.88 0.00 43.34 1.31
193 196 2.431954 ATTCTCGGACGGAGGAAGTA 57.568 50.000 9.88 0.00 43.34 2.24
194 197 2.022934 GTATTCTCGGACGGAGGAAGT 58.977 52.381 9.88 0.00 43.34 3.01
195 198 2.299521 AGTATTCTCGGACGGAGGAAG 58.700 52.381 9.88 0.00 43.34 3.46
196 199 2.426024 CAAGTATTCTCGGACGGAGGAA 59.574 50.000 9.88 4.34 43.34 3.36
197 200 2.022195 CAAGTATTCTCGGACGGAGGA 58.978 52.381 9.88 1.75 43.34 3.71
198 201 1.749634 ACAAGTATTCTCGGACGGAGG 59.250 52.381 9.88 0.00 43.34 4.30
199 202 4.334759 TCTTACAAGTATTCTCGGACGGAG 59.665 45.833 3.68 3.68 44.58 4.63
200 203 4.264253 TCTTACAAGTATTCTCGGACGGA 58.736 43.478 0.00 0.00 0.00 4.69
201 204 4.334759 TCTCTTACAAGTATTCTCGGACGG 59.665 45.833 0.00 0.00 0.00 4.79
202 205 5.481200 TCTCTTACAAGTATTCTCGGACG 57.519 43.478 0.00 0.00 0.00 4.79
203 206 7.222999 CCATTTCTCTTACAAGTATTCTCGGAC 59.777 40.741 0.00 0.00 0.00 4.79
204 207 7.123697 TCCATTTCTCTTACAAGTATTCTCGGA 59.876 37.037 0.00 0.00 0.00 4.55
205 208 7.265673 TCCATTTCTCTTACAAGTATTCTCGG 58.734 38.462 0.00 0.00 0.00 4.63
206 209 8.759641 CATCCATTTCTCTTACAAGTATTCTCG 58.240 37.037 0.00 0.00 0.00 4.04
207 210 9.606631 ACATCCATTTCTCTTACAAGTATTCTC 57.393 33.333 0.00 0.00 0.00 2.87
282 285 5.276270 CCTCCGTTCGAAAATACTTATCGA 58.724 41.667 0.00 0.00 43.18 3.59
283 286 4.443394 CCCTCCGTTCGAAAATACTTATCG 59.557 45.833 0.00 0.00 37.90 2.92
284 287 5.594926 TCCCTCCGTTCGAAAATACTTATC 58.405 41.667 0.00 0.00 0.00 1.75
285 288 5.128335 ACTCCCTCCGTTCGAAAATACTTAT 59.872 40.000 0.00 0.00 0.00 1.73
286 289 4.463891 ACTCCCTCCGTTCGAAAATACTTA 59.536 41.667 0.00 0.00 0.00 2.24
287 290 3.260128 ACTCCCTCCGTTCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
288 291 2.830321 ACTCCCTCCGTTCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
289 292 3.242549 ACTCCCTCCGTTCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
290 293 6.266103 ACATATACTCCCTCCGTTCGAAAATA 59.734 38.462 0.00 0.00 0.00 1.40
291 294 5.070047 ACATATACTCCCTCCGTTCGAAAAT 59.930 40.000 0.00 0.00 0.00 1.82
292 295 4.403432 ACATATACTCCCTCCGTTCGAAAA 59.597 41.667 0.00 0.00 0.00 2.29
293 296 3.956199 ACATATACTCCCTCCGTTCGAAA 59.044 43.478 0.00 0.00 0.00 3.46
294 297 3.559069 ACATATACTCCCTCCGTTCGAA 58.441 45.455 0.00 0.00 0.00 3.71
295 298 3.219176 ACATATACTCCCTCCGTTCGA 57.781 47.619 0.00 0.00 0.00 3.71
296 299 4.317671 AAACATATACTCCCTCCGTTCG 57.682 45.455 0.00 0.00 0.00 3.95
297 300 6.041296 TCCTTAAACATATACTCCCTCCGTTC 59.959 42.308 0.00 0.00 0.00 3.95
298 301 5.901276 TCCTTAAACATATACTCCCTCCGTT 59.099 40.000 0.00 0.00 0.00 4.44
299 302 5.461327 TCCTTAAACATATACTCCCTCCGT 58.539 41.667 0.00 0.00 0.00 4.69
300 303 6.221659 GTTCCTTAAACATATACTCCCTCCG 58.778 44.000 0.00 0.00 37.82 4.63
301 304 6.329460 AGGTTCCTTAAACATATACTCCCTCC 59.671 42.308 0.00 0.00 39.81 4.30
302 305 7.376335 AGGTTCCTTAAACATATACTCCCTC 57.624 40.000 0.00 0.00 39.81 4.30
303 306 8.072480 ACTAGGTTCCTTAAACATATACTCCCT 58.928 37.037 0.00 0.00 39.81 4.20
304 307 8.260099 ACTAGGTTCCTTAAACATATACTCCC 57.740 38.462 0.00 0.00 39.81 4.30
305 308 8.081025 CGACTAGGTTCCTTAAACATATACTCC 58.919 40.741 0.00 0.00 39.81 3.85
306 309 8.844244 TCGACTAGGTTCCTTAAACATATACTC 58.156 37.037 0.00 0.00 39.81 2.59
307 310 8.757982 TCGACTAGGTTCCTTAAACATATACT 57.242 34.615 0.00 0.00 39.81 2.12
308 311 9.978044 AATCGACTAGGTTCCTTAAACATATAC 57.022 33.333 0.00 0.00 39.81 1.47
324 327 5.163550 TGTGTTCCACTGATAATCGACTAGG 60.164 44.000 0.00 0.00 35.11 3.02
376 379 5.180271 TCTTTCAATTATCGGTGTACCCAC 58.820 41.667 0.00 0.00 41.06 4.61
409 415 9.469807 CATAGTCAGAGTTGTAATCTAACCATC 57.530 37.037 0.00 0.00 0.00 3.51
436 442 1.398390 CGGGTGCTACAAATCTGCTTC 59.602 52.381 0.00 0.00 0.00 3.86
437 443 1.453155 CGGGTGCTACAAATCTGCTT 58.547 50.000 0.00 0.00 0.00 3.91
438 444 0.392998 CCGGGTGCTACAAATCTGCT 60.393 55.000 0.00 0.00 0.00 4.24
439 445 1.376609 CCCGGGTGCTACAAATCTGC 61.377 60.000 14.18 0.00 0.00 4.26
440 446 0.035439 ACCCGGGTGCTACAAATCTG 60.035 55.000 29.69 0.00 0.00 2.90
441 447 0.035439 CACCCGGGTGCTACAAATCT 60.035 55.000 39.44 2.75 39.39 2.40
442 448 2.477880 CACCCGGGTGCTACAAATC 58.522 57.895 39.44 0.00 39.39 2.17
443 449 4.734652 CACCCGGGTGCTACAAAT 57.265 55.556 39.44 4.30 39.39 2.32
453 459 4.162690 GTGGAGCTAGCACCCGGG 62.163 72.222 25.94 22.25 0.00 5.73
454 460 3.390521 TGTGGAGCTAGCACCCGG 61.391 66.667 25.94 0.00 0.00 5.73
455 461 2.125512 GTGTGGAGCTAGCACCCG 60.126 66.667 25.94 0.00 0.00 5.28
456 462 2.269241 GGTGTGGAGCTAGCACCC 59.731 66.667 25.94 21.02 44.95 4.61
458 464 0.976073 TAGGGGTGTGGAGCTAGCAC 60.976 60.000 18.83 11.05 0.00 4.40
460 466 1.619332 GTATAGGGGTGTGGAGCTAGC 59.381 57.143 6.62 6.62 0.00 3.42
461 467 3.246416 AGTATAGGGGTGTGGAGCTAG 57.754 52.381 0.00 0.00 0.00 3.42
462 468 6.669736 ATATAGTATAGGGGTGTGGAGCTA 57.330 41.667 0.00 0.00 0.00 3.32
463 469 3.925261 ATAGTATAGGGGTGTGGAGCT 57.075 47.619 0.00 0.00 0.00 4.09
464 470 6.192773 TGTATATAGTATAGGGGTGTGGAGC 58.807 44.000 0.00 0.00 0.00 4.70
465 471 8.840200 AATGTATATAGTATAGGGGTGTGGAG 57.160 38.462 0.00 0.00 0.00 3.86
539 754 5.174037 TCGAAAACCCAGGTTTGATATCT 57.826 39.130 15.33 0.00 46.22 1.98
540 755 5.823045 AGATCGAAAACCCAGGTTTGATATC 59.177 40.000 15.33 15.79 46.22 1.63
541 756 5.755849 AGATCGAAAACCCAGGTTTGATAT 58.244 37.500 15.33 9.20 46.22 1.63
542 757 5.174037 AGATCGAAAACCCAGGTTTGATA 57.826 39.130 15.33 4.67 46.22 2.15
544 759 3.502123 AGATCGAAAACCCAGGTTTGA 57.498 42.857 15.33 9.73 46.22 2.69
545 760 4.324267 AGTAGATCGAAAACCCAGGTTTG 58.676 43.478 15.33 4.62 46.22 2.93
547 762 3.055312 GGAGTAGATCGAAAACCCAGGTT 60.055 47.826 0.00 0.00 40.45 3.50
548 763 2.500504 GGAGTAGATCGAAAACCCAGGT 59.499 50.000 0.00 0.00 0.00 4.00
549 764 2.158943 GGGAGTAGATCGAAAACCCAGG 60.159 54.545 11.23 0.00 36.27 4.45
550 765 2.481449 CGGGAGTAGATCGAAAACCCAG 60.481 54.545 14.66 6.96 36.04 4.45
551 766 1.479323 CGGGAGTAGATCGAAAACCCA 59.521 52.381 14.66 0.00 36.04 4.51
552 767 1.805495 GCGGGAGTAGATCGAAAACCC 60.805 57.143 0.00 0.00 0.00 4.11
554 769 1.197910 CGCGGGAGTAGATCGAAAAC 58.802 55.000 0.00 0.00 0.00 2.43
555 770 0.813184 ACGCGGGAGTAGATCGAAAA 59.187 50.000 12.47 0.00 0.00 2.29
556 771 0.099968 CACGCGGGAGTAGATCGAAA 59.900 55.000 12.47 0.00 0.00 3.46
558 773 0.745486 TTCACGCGGGAGTAGATCGA 60.745 55.000 12.53 0.00 0.00 3.59
559 774 0.099968 TTTCACGCGGGAGTAGATCG 59.900 55.000 12.53 0.00 0.00 3.69
560 775 2.510768 ATTTCACGCGGGAGTAGATC 57.489 50.000 12.53 0.00 0.00 2.75
561 776 2.981859 AATTTCACGCGGGAGTAGAT 57.018 45.000 12.53 1.72 0.00 1.98
562 777 2.613691 GAAATTTCACGCGGGAGTAGA 58.386 47.619 12.53 0.00 0.00 2.59
563 778 1.323534 CGAAATTTCACGCGGGAGTAG 59.676 52.381 12.53 0.00 0.00 2.57
565 780 0.601841 ACGAAATTTCACGCGGGAGT 60.602 50.000 12.53 1.06 0.00 3.85
567 782 0.600518 TCACGAAATTTCACGCGGGA 60.601 50.000 7.15 7.15 33.26 5.14
568 783 0.236187 TTCACGAAATTTCACGCGGG 59.764 50.000 17.99 6.51 0.00 6.13
569 784 2.025544 TTTCACGAAATTTCACGCGG 57.974 45.000 17.99 0.00 0.00 6.46
589 1646 4.141551 GGGGAGATACGTTTCCTGGTATTT 60.142 45.833 0.00 0.00 33.85 1.40
592 1649 2.292389 TGGGGAGATACGTTTCCTGGTA 60.292 50.000 0.00 0.00 33.85 3.25
596 1653 1.768870 CCATGGGGAGATACGTTTCCT 59.231 52.381 2.85 0.00 35.59 3.36
620 2689 1.070786 CCCGGGCGTATGTGCTAAT 59.929 57.895 8.08 0.00 34.52 1.73
633 2702 0.822164 ATCAGACTTTACGTCCCGGG 59.178 55.000 16.85 16.85 43.91 5.73
692 2764 2.245159 TCATCCGATGAAGGCACATC 57.755 50.000 8.70 12.47 41.98 3.06
728 2800 2.648059 ACCTGGATGCTCACTTTATGC 58.352 47.619 0.00 0.00 0.00 3.14
762 2846 2.327325 ACCTTCTCAGCCTCAAGGTA 57.673 50.000 0.59 0.00 46.69 3.08
799 2909 3.791973 TTGTTTGAACTTGCATCCGTT 57.208 38.095 0.00 0.00 0.00 4.44
867 2987 6.113411 CCAAGAGAAACCGGACATTTATAGT 58.887 40.000 9.46 0.00 0.00 2.12
884 3004 6.070366 AGTGATTGATGAAGATGACCAAGAGA 60.070 38.462 0.00 0.00 0.00 3.10
963 3089 3.822594 TTCGTTGTTGATATGTGGTGC 57.177 42.857 0.00 0.00 0.00 5.01
1046 3179 1.816537 GAGTAGAGCATCACCCGCA 59.183 57.895 0.00 0.00 37.82 5.69
1296 3429 1.132977 TGTAGGTGTGGGTTGGAGAGA 60.133 52.381 0.00 0.00 0.00 3.10
1308 3441 1.204941 GCGAGGAAGTCATGTAGGTGT 59.795 52.381 0.00 0.00 0.00 4.16
1316 3449 1.078848 GCACCAGCGAGGAAGTCAT 60.079 57.895 5.19 0.00 41.22 3.06
1623 3756 1.135094 AGATGCCCTGTGATCGGAAT 58.865 50.000 0.00 0.00 0.00 3.01
1865 3998 2.593436 CCCTGGTTTGTTCGGCGT 60.593 61.111 6.85 0.00 0.00 5.68
1987 4140 1.823169 CGGTCCAGGAAACCCTTCGA 61.823 60.000 0.00 0.00 32.89 3.71
2232 4559 1.965414 TTGCCTCCACCATCTCCTTA 58.035 50.000 0.00 0.00 0.00 2.69
2269 4596 2.039480 CCGAATCCATCATCCACCTGAT 59.961 50.000 0.00 0.00 36.29 2.90
2340 4667 1.339610 CCCTCGAGTAGAGCCTCATTG 59.660 57.143 12.31 0.00 45.54 2.82
2376 4703 2.627945 TCAACAAGCTCTGTCAACGTT 58.372 42.857 0.00 0.00 37.23 3.99
2385 4712 1.143684 ACCCACACATCAACAAGCTCT 59.856 47.619 0.00 0.00 0.00 4.09
2387 4714 2.071778 AACCCACACATCAACAAGCT 57.928 45.000 0.00 0.00 0.00 3.74
2394 4721 3.568007 GTCAAGCTTTAACCCACACATCA 59.432 43.478 0.00 0.00 0.00 3.07
2399 4726 3.317711 CACATGTCAAGCTTTAACCCACA 59.682 43.478 0.00 0.00 0.00 4.17
2453 4780 4.640771 TTTAAGACCCAATGCTCACTCT 57.359 40.909 0.00 0.00 0.00 3.24
2494 4827 7.587028 GTGTTGATAGTACGTGTTATAGAGAGC 59.413 40.741 0.00 0.00 0.00 4.09
2501 4834 9.297586 CTATTGTGTGTTGATAGTACGTGTTAT 57.702 33.333 0.00 0.00 0.00 1.89
2507 4840 8.683550 TTTCTCTATTGTGTGTTGATAGTACG 57.316 34.615 0.00 0.00 0.00 3.67
2592 4930 1.608283 GCCCTAGGTGTAATCCGATGC 60.608 57.143 8.29 0.00 0.00 3.91
2593 4931 1.971357 AGCCCTAGGTGTAATCCGATG 59.029 52.381 8.29 0.00 0.00 3.84
2594 4932 2.400467 AGCCCTAGGTGTAATCCGAT 57.600 50.000 8.29 0.00 0.00 4.18
2595 4933 3.228453 CTTAGCCCTAGGTGTAATCCGA 58.772 50.000 8.29 0.00 0.00 4.55
2596 4934 2.963782 ACTTAGCCCTAGGTGTAATCCG 59.036 50.000 8.29 0.00 0.00 4.18
2597 4935 4.282957 GGTACTTAGCCCTAGGTGTAATCC 59.717 50.000 8.29 4.84 0.00 3.01
2598 4936 5.146298 AGGTACTTAGCCCTAGGTGTAATC 58.854 45.833 8.29 0.02 27.25 1.75
2599 4937 5.153670 AGGTACTTAGCCCTAGGTGTAAT 57.846 43.478 8.29 0.00 27.25 1.89
2600 4938 4.614967 AGGTACTTAGCCCTAGGTGTAA 57.385 45.455 8.29 4.08 27.25 2.41
2616 4954 5.627499 TCAAAGTGCATCATTCAAGGTAC 57.373 39.130 0.00 0.00 0.00 3.34
2617 4955 5.945191 TCATCAAAGTGCATCATTCAAGGTA 59.055 36.000 0.00 0.00 0.00 3.08
2618 4956 4.768448 TCATCAAAGTGCATCATTCAAGGT 59.232 37.500 0.00 0.00 0.00 3.50
2619 4957 5.319140 TCATCAAAGTGCATCATTCAAGG 57.681 39.130 0.00 0.00 0.00 3.61
2620 4958 7.827819 AAATCATCAAAGTGCATCATTCAAG 57.172 32.000 0.00 0.00 0.00 3.02
2621 4959 8.610248 AAAAATCATCAAAGTGCATCATTCAA 57.390 26.923 0.00 0.00 0.00 2.69
2658 4996 9.110502 GAACGATGACCCTTATAATTTCTTCTT 57.889 33.333 0.00 0.00 0.00 2.52
2659 4997 7.715686 GGAACGATGACCCTTATAATTTCTTCT 59.284 37.037 0.00 0.00 0.00 2.85
2660 4998 7.715686 AGGAACGATGACCCTTATAATTTCTTC 59.284 37.037 0.00 0.00 0.00 2.87
2661 4999 7.574607 AGGAACGATGACCCTTATAATTTCTT 58.425 34.615 0.00 0.00 0.00 2.52
2662 5000 7.138054 AGGAACGATGACCCTTATAATTTCT 57.862 36.000 0.00 0.00 0.00 2.52
2663 5001 8.897872 TTAGGAACGATGACCCTTATAATTTC 57.102 34.615 0.00 0.00 0.00 2.17
2664 5002 7.444487 GCTTAGGAACGATGACCCTTATAATTT 59.556 37.037 0.00 0.00 0.00 1.82
2665 5003 6.935208 GCTTAGGAACGATGACCCTTATAATT 59.065 38.462 0.00 0.00 0.00 1.40
2666 5004 6.465084 GCTTAGGAACGATGACCCTTATAAT 58.535 40.000 0.00 0.00 0.00 1.28
2667 5005 5.221581 GGCTTAGGAACGATGACCCTTATAA 60.222 44.000 0.00 0.00 0.00 0.98
2668 5006 4.282703 GGCTTAGGAACGATGACCCTTATA 59.717 45.833 0.00 0.00 0.00 0.98
2669 5007 3.071167 GGCTTAGGAACGATGACCCTTAT 59.929 47.826 0.00 0.00 0.00 1.73
2670 5008 2.433239 GGCTTAGGAACGATGACCCTTA 59.567 50.000 0.00 0.00 0.00 2.69
2671 5009 1.209747 GGCTTAGGAACGATGACCCTT 59.790 52.381 0.00 0.00 0.00 3.95
2672 5010 0.831307 GGCTTAGGAACGATGACCCT 59.169 55.000 0.00 0.00 0.00 4.34
2673 5011 0.831307 AGGCTTAGGAACGATGACCC 59.169 55.000 0.00 0.00 0.00 4.46
2674 5012 2.957006 TCTAGGCTTAGGAACGATGACC 59.043 50.000 2.65 0.00 0.00 4.02
2675 5013 3.551250 GCTCTAGGCTTAGGAACGATGAC 60.551 52.174 2.65 0.00 38.06 3.06
2676 5014 2.623889 GCTCTAGGCTTAGGAACGATGA 59.376 50.000 2.65 0.00 38.06 2.92
2677 5015 3.019933 GCTCTAGGCTTAGGAACGATG 57.980 52.381 2.65 0.00 38.06 3.84
2694 5032 1.971357 TGGCAAGTAGGGCTATAGCTC 59.029 52.381 23.53 20.68 43.28 4.09
2695 5033 2.103153 TGGCAAGTAGGGCTATAGCT 57.897 50.000 23.53 8.16 41.70 3.32
2696 5034 3.118592 CCTATGGCAAGTAGGGCTATAGC 60.119 52.174 16.78 16.78 45.82 2.97
2697 5035 4.744795 CCTATGGCAAGTAGGGCTATAG 57.255 50.000 6.31 9.85 46.37 1.31
2712 5050 1.901085 GGCGGAGATAGGCCTATGG 59.099 63.158 30.20 15.99 45.93 2.74
2718 5056 4.321966 GCAGGGGCGGAGATAGGC 62.322 72.222 0.00 0.00 0.00 3.93
2728 5066 0.955919 GACGGCATATAAGCAGGGGC 60.956 60.000 5.14 0.00 41.61 5.80
2729 5067 0.687354 AGACGGCATATAAGCAGGGG 59.313 55.000 5.14 0.00 35.83 4.79
2730 5068 1.344438 TGAGACGGCATATAAGCAGGG 59.656 52.381 5.14 0.00 35.83 4.45
2731 5069 2.820059 TGAGACGGCATATAAGCAGG 57.180 50.000 5.14 0.00 35.83 4.85
2732 5070 5.679734 ATTTTGAGACGGCATATAAGCAG 57.320 39.130 1.93 0.08 35.83 4.24
2733 5071 6.449635 AAATTTTGAGACGGCATATAAGCA 57.550 33.333 1.93 0.00 35.83 3.91
2737 5075 9.952030 TGGATATAAATTTTGAGACGGCATATA 57.048 29.630 0.00 0.00 0.00 0.86
2738 5076 8.862325 TGGATATAAATTTTGAGACGGCATAT 57.138 30.769 0.00 0.00 0.00 1.78
2739 5077 8.154203 TCTGGATATAAATTTTGAGACGGCATA 58.846 33.333 0.00 0.00 0.00 3.14
2740 5078 6.998074 TCTGGATATAAATTTTGAGACGGCAT 59.002 34.615 0.00 0.00 0.00 4.40
2741 5079 6.353323 TCTGGATATAAATTTTGAGACGGCA 58.647 36.000 0.00 0.00 0.00 5.69
2742 5080 6.861065 TCTGGATATAAATTTTGAGACGGC 57.139 37.500 0.00 0.00 0.00 5.68
2772 5110 8.023021 AGATAGCCGATATGATAAATGCCTAA 57.977 34.615 0.00 0.00 0.00 2.69
2776 5114 7.710907 TGGTAAGATAGCCGATATGATAAATGC 59.289 37.037 0.00 0.00 0.00 3.56
2789 5127 1.070289 GGGAAGGTGGTAAGATAGCCG 59.930 57.143 0.00 0.00 0.00 5.52
2810 5148 2.192443 CTCCTAGACTCGCGGGGA 59.808 66.667 12.42 6.33 0.00 4.81
2812 5150 2.124236 ACCTCCTAGACTCGCGGG 60.124 66.667 3.27 3.27 0.00 6.13
2813 5151 1.030488 TTGACCTCCTAGACTCGCGG 61.030 60.000 6.13 0.00 0.00 6.46
2832 5170 7.607250 AGTAGACGTCAGATCTCTTCATTTTT 58.393 34.615 19.50 0.00 0.00 1.94
2833 5171 7.164230 AGTAGACGTCAGATCTCTTCATTTT 57.836 36.000 19.50 0.00 0.00 1.82
2834 5172 6.767524 AGTAGACGTCAGATCTCTTCATTT 57.232 37.500 19.50 0.00 0.00 2.32
2835 5173 7.867305 TTAGTAGACGTCAGATCTCTTCATT 57.133 36.000 19.50 0.00 0.00 2.57
2836 5174 7.867305 TTTAGTAGACGTCAGATCTCTTCAT 57.133 36.000 19.50 0.00 0.00 2.57
2837 5175 7.606839 TCTTTTAGTAGACGTCAGATCTCTTCA 59.393 37.037 19.50 0.00 0.00 3.02
2838 5176 7.976826 TCTTTTAGTAGACGTCAGATCTCTTC 58.023 38.462 19.50 0.00 0.00 2.87
2839 5177 7.925043 TCTTTTAGTAGACGTCAGATCTCTT 57.075 36.000 19.50 0.00 0.00 2.85
2840 5178 7.554835 ACATCTTTTAGTAGACGTCAGATCTCT 59.445 37.037 19.50 8.55 0.00 3.10
2841 5179 7.642194 CACATCTTTTAGTAGACGTCAGATCTC 59.358 40.741 19.50 1.26 0.00 2.75
2842 5180 7.415765 CCACATCTTTTAGTAGACGTCAGATCT 60.416 40.741 19.50 11.89 0.00 2.75
2843 5181 6.693545 CCACATCTTTTAGTAGACGTCAGATC 59.306 42.308 19.50 4.84 0.00 2.75
2844 5182 6.565234 CCACATCTTTTAGTAGACGTCAGAT 58.435 40.000 19.50 12.03 0.00 2.90
2845 5183 5.621555 GCCACATCTTTTAGTAGACGTCAGA 60.622 44.000 19.50 10.10 0.00 3.27
2846 5184 4.563184 GCCACATCTTTTAGTAGACGTCAG 59.437 45.833 19.50 4.31 0.00 3.51
2847 5185 4.021807 TGCCACATCTTTTAGTAGACGTCA 60.022 41.667 19.50 0.48 0.00 4.35
2848 5186 4.326548 GTGCCACATCTTTTAGTAGACGTC 59.673 45.833 7.70 7.70 0.00 4.34
2849 5187 4.243270 GTGCCACATCTTTTAGTAGACGT 58.757 43.478 0.00 0.00 0.00 4.34
2850 5188 4.242475 TGTGCCACATCTTTTAGTAGACG 58.758 43.478 0.00 0.00 0.00 4.18
2869 5207 2.034558 AGCCGGTTGAGTTCAAAATGTG 59.965 45.455 1.90 0.00 37.63 3.21
2870 5208 2.034558 CAGCCGGTTGAGTTCAAAATGT 59.965 45.455 13.89 0.00 37.63 2.71
2883 5221 0.036010 CTCAGATTGGACAGCCGGTT 60.036 55.000 1.90 0.00 36.79 4.44
2891 5229 2.167861 GTCGCCGCTCAGATTGGAC 61.168 63.158 0.00 0.00 0.00 4.02
2909 5247 4.349365 TGTAGGGGGCCTTTTTAATTCTG 58.651 43.478 0.84 0.00 34.61 3.02
2910 5248 4.685513 TGTAGGGGGCCTTTTTAATTCT 57.314 40.909 0.84 0.00 34.61 2.40
2911 5249 4.442893 GCATGTAGGGGGCCTTTTTAATTC 60.443 45.833 0.84 0.00 34.61 2.17
2912 5250 3.454447 GCATGTAGGGGGCCTTTTTAATT 59.546 43.478 0.84 0.00 34.61 1.40
2914 5252 2.225394 TGCATGTAGGGGGCCTTTTTAA 60.225 45.455 0.84 0.00 34.61 1.52
2925 5264 2.092753 AGATTGACTGGTGCATGTAGGG 60.093 50.000 0.00 0.00 0.00 3.53
2964 5303 4.662961 TCTGGCAGCGGTGTCACG 62.663 66.667 19.41 14.32 31.64 4.35
2966 5305 2.807107 AAGTCTGGCAGCGGTGTCA 61.807 57.895 21.96 21.96 35.32 3.58
2981 5320 1.978580 CCTAGACAAGGGACACCAAGT 59.021 52.381 0.00 0.00 42.32 3.16
2997 5337 0.457851 CCTCGCCTGAACTGACCTAG 59.542 60.000 0.00 0.00 0.00 3.02
3031 5371 4.194720 GAGATGGCCTCGACGCGT 62.195 66.667 13.85 13.85 31.32 6.01
3042 5382 0.443869 CAACGCCAAGAACGAGATGG 59.556 55.000 0.00 0.00 37.29 3.51
3056 5396 1.136147 CATGAGAGCAAGGCAACGC 59.864 57.895 0.00 0.00 46.39 4.84
3088 5428 2.315901 CTGGAAATTTTCACGCGTTCC 58.684 47.619 10.22 13.47 38.59 3.62
3098 5438 7.096551 CGATTAAATGGTCACCTGGAAATTTT 58.903 34.615 0.00 0.00 30.68 1.82
3108 5448 3.551485 GCATTTGCGATTAAATGGTCACC 59.449 43.478 16.59 0.00 44.37 4.02
3134 5474 5.221641 GGTAGGCAACATGTACATATCTCCA 60.222 44.000 8.32 0.00 41.41 3.86
3136 5476 5.696724 GTGGTAGGCAACATGTACATATCTC 59.303 44.000 8.32 0.00 41.41 2.75
3146 5486 4.260985 TGACATTAGTGGTAGGCAACATG 58.739 43.478 0.00 0.00 41.41 3.21
3154 5494 6.192234 ACGACTAGTTGACATTAGTGGTAG 57.808 41.667 17.37 0.00 37.17 3.18
3168 5508 5.125578 TCTGCTACATGATCAACGACTAGTT 59.874 40.000 0.00 0.00 45.45 2.24
3181 5521 2.507058 AGGCTTTGGATCTGCTACATGA 59.493 45.455 0.00 0.00 0.00 3.07
3187 5527 4.033709 TCTAACTAGGCTTTGGATCTGCT 58.966 43.478 0.00 0.00 0.00 4.24
3188 5528 4.408182 TCTAACTAGGCTTTGGATCTGC 57.592 45.455 0.00 0.00 0.00 4.26
3189 5529 7.872113 AAAATCTAACTAGGCTTTGGATCTG 57.128 36.000 0.00 0.00 0.00 2.90
3190 5530 8.332487 AGAAAAATCTAACTAGGCTTTGGATCT 58.668 33.333 0.00 0.00 0.00 2.75
3191 5531 8.512966 AGAAAAATCTAACTAGGCTTTGGATC 57.487 34.615 0.00 0.00 0.00 3.36
3192 5532 8.109634 TGAGAAAAATCTAACTAGGCTTTGGAT 58.890 33.333 0.00 0.00 0.00 3.41
3194 5534 7.687941 TGAGAAAAATCTAACTAGGCTTTGG 57.312 36.000 0.00 0.00 0.00 3.28
3206 5632 8.884124 AGGATGACCAATTTGAGAAAAATCTA 57.116 30.769 0.00 0.00 38.94 1.98
3231 5657 1.552486 CCTCCAAGACTCAGGGGTGTA 60.552 57.143 0.00 0.00 0.00 2.90
3243 5669 0.613260 CCATTCACCGACCTCCAAGA 59.387 55.000 0.00 0.00 0.00 3.02
3246 5672 0.252057 TCTCCATTCACCGACCTCCA 60.252 55.000 0.00 0.00 0.00 3.86
3276 5702 0.038166 ACACCACATTGGCTGGTAGG 59.962 55.000 0.00 0.00 42.67 3.18
3310 5749 5.296813 ACAAAGATGCCACTAAAATCGTC 57.703 39.130 0.00 0.00 0.00 4.20
3323 5762 7.706607 GGTAAAATTTCAGGGATACAAAGATGC 59.293 37.037 0.00 0.00 39.74 3.91
3346 5785 1.002257 TCGAGCTACCCACACGGTA 60.002 57.895 0.00 0.00 45.97 4.02
3350 5789 0.317479 AACACTCGAGCTACCCACAC 59.683 55.000 13.61 0.00 0.00 3.82
3362 5801 7.549488 ACTGATCCTTTTTATAGGAAACACTCG 59.451 37.037 0.00 0.00 46.94 4.18
3364 5803 9.232473 GAACTGATCCTTTTTATAGGAAACACT 57.768 33.333 0.00 0.00 46.94 3.55
3365 5804 8.175716 CGAACTGATCCTTTTTATAGGAAACAC 58.824 37.037 0.00 0.00 46.94 3.32
3370 5809 8.302515 AGTACGAACTGATCCTTTTTATAGGA 57.697 34.615 0.00 0.00 40.63 2.94
3392 5832 1.005037 CGGACAAGCCTGTGCAGTA 60.005 57.895 7.77 0.00 43.71 2.74
3394 5834 2.031012 TCGGACAAGCCTGTGCAG 59.969 61.111 7.77 0.69 43.71 4.41
3395 5835 2.031012 CTCGGACAAGCCTGTGCA 59.969 61.111 7.77 0.00 43.71 4.57
3396 5836 1.598130 AACTCGGACAAGCCTGTGC 60.598 57.895 0.00 0.00 40.33 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.