Multiple sequence alignment - TraesCS3B01G065100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G065100 chr3B 100.000 3053 0 0 1 3053 38793041 38796093 0.000000e+00 5638.0
1 TraesCS3B01G065100 chr3B 83.305 1749 180 60 545 2212 37970252 37971969 0.000000e+00 1509.0
2 TraesCS3B01G065100 chr3B 90.160 813 68 3 1274 2080 38212450 38213256 0.000000e+00 1048.0
3 TraesCS3B01G065100 chr3B 90.160 813 68 3 1274 2080 38309783 38310589 0.000000e+00 1048.0
4 TraesCS3B01G065100 chr3B 84.211 228 27 5 547 767 38211235 38211460 2.380000e-51 213.0
5 TraesCS3B01G065100 chr3B 84.211 228 27 5 547 767 38308678 38308903 2.380000e-51 213.0
6 TraesCS3B01G065100 chr3B 80.277 289 46 7 2768 3053 38214704 38214984 1.110000e-49 207.0
7 TraesCS3B01G065100 chr3B 92.308 65 5 0 974 1038 38211992 38212056 3.240000e-15 93.5
8 TraesCS3B01G065100 chr3B 92.308 65 5 0 974 1038 38309435 38309499 3.240000e-15 93.5
9 TraesCS3B01G065100 chr3D 83.581 1748 176 55 545 2212 21792570 21794286 0.000000e+00 1535.0
10 TraesCS3B01G065100 chr3D 89.869 1145 93 8 952 2080 21888389 21889526 0.000000e+00 1450.0
11 TraesCS3B01G065100 chr3D 79.832 357 58 9 177 532 21887757 21888100 6.540000e-62 248.0
12 TraesCS3B01G065100 chr3D 81.230 309 30 17 544 841 21888083 21888374 1.100000e-54 224.0
13 TraesCS3B01G065100 chr3A 83.333 1746 183 55 545 2212 31558722 31560437 0.000000e+00 1513.0
14 TraesCS3B01G065100 chr3A 88.966 1160 101 14 938 2078 31603441 31604592 0.000000e+00 1408.0
15 TraesCS3B01G065100 chr3A 79.915 473 64 16 2210 2660 31604806 31605269 4.910000e-83 318.0
16 TraesCS3B01G065100 chr3A 77.778 522 50 32 382 889 31602994 31603463 8.400000e-66 261.0
17 TraesCS3B01G065100 chr3A 82.278 237 41 1 2766 3001 31605904 31606140 1.440000e-48 204.0
18 TraesCS3B01G065100 chrUn 90.233 1116 94 5 974 2080 336370768 336369659 0.000000e+00 1443.0
19 TraesCS3B01G065100 chrUn 90.143 1116 95 5 974 2080 336373434 336372325 0.000000e+00 1437.0
20 TraesCS3B01G065100 chrUn 90.160 813 68 3 1274 2080 341538639 341537833 0.000000e+00 1048.0
21 TraesCS3B01G065100 chrUn 90.160 813 68 3 1274 2080 341541149 341540343 0.000000e+00 1048.0
22 TraesCS3B01G065100 chrUn 84.444 225 26 5 550 767 336371522 336371300 2.380000e-51 213.0
23 TraesCS3B01G065100 chrUn 84.444 225 26 5 550 767 336374188 336373966 2.380000e-51 213.0
24 TraesCS3B01G065100 chrUn 80.277 289 46 7 2768 3053 341536569 341536289 1.110000e-49 207.0
25 TraesCS3B01G065100 chrUn 80.277 289 46 7 2768 3053 341539079 341538799 1.110000e-49 207.0
26 TraesCS3B01G065100 chrUn 81.988 161 20 5 2426 2586 326880646 326880797 8.880000e-26 128.0
27 TraesCS3B01G065100 chrUn 81.988 161 20 5 2426 2586 464383828 464383677 8.880000e-26 128.0
28 TraesCS3B01G065100 chr4D 81.988 161 20 5 2426 2586 11140238 11140389 8.880000e-26 128.0
29 TraesCS3B01G065100 chr4A 80.124 161 23 7 2426 2586 591933573 591933724 8.950000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G065100 chr3B 38793041 38796093 3052 False 5638.000000 5638 100.000000 1 3053 1 chr3B.!!$F2 3052
1 TraesCS3B01G065100 chr3B 37970252 37971969 1717 False 1509.000000 1509 83.305000 545 2212 1 chr3B.!!$F1 1667
2 TraesCS3B01G065100 chr3B 38308678 38310589 1911 False 451.500000 1048 88.893000 547 2080 3 chr3B.!!$F4 1533
3 TraesCS3B01G065100 chr3B 38211235 38214984 3749 False 390.375000 1048 86.739000 547 3053 4 chr3B.!!$F3 2506
4 TraesCS3B01G065100 chr3D 21792570 21794286 1716 False 1535.000000 1535 83.581000 545 2212 1 chr3D.!!$F1 1667
5 TraesCS3B01G065100 chr3D 21887757 21889526 1769 False 640.666667 1450 83.643667 177 2080 3 chr3D.!!$F2 1903
6 TraesCS3B01G065100 chr3A 31558722 31560437 1715 False 1513.000000 1513 83.333000 545 2212 1 chr3A.!!$F1 1667
7 TraesCS3B01G065100 chr3A 31602994 31606140 3146 False 547.750000 1408 82.234250 382 3001 4 chr3A.!!$F2 2619
8 TraesCS3B01G065100 chrUn 336369659 336374188 4529 True 826.500000 1443 87.316000 550 2080 4 chrUn.!!$R2 1530
9 TraesCS3B01G065100 chrUn 341536289 341541149 4860 True 627.500000 1048 85.218500 1274 3053 4 chrUn.!!$R3 1779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 1368 1.073763 AGCCCACATAAGCACACAGAA 59.926 47.619 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2414 3799 0.178953 ACAATCCAAGGCCAGCAAGT 60.179 50.0 5.01 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.523676 GATCATGAAGATCGAAGAAAGGTC 57.476 41.667 0.00 0.00 43.40 3.85
34 35 4.759782 TCATGAAGATCGAAGAAAGGTCC 58.240 43.478 0.00 0.00 43.58 4.46
35 36 4.467795 TCATGAAGATCGAAGAAAGGTCCT 59.532 41.667 0.00 0.00 43.58 3.85
36 37 4.193826 TGAAGATCGAAGAAAGGTCCTG 57.806 45.455 0.00 0.00 43.58 3.86
38 39 2.541466 AGATCGAAGAAAGGTCCTGGT 58.459 47.619 0.00 0.00 43.58 4.00
39 40 3.709587 AGATCGAAGAAAGGTCCTGGTA 58.290 45.455 0.00 0.00 43.58 3.25
41 42 3.955650 TCGAAGAAAGGTCCTGGTAAG 57.044 47.619 0.00 0.00 0.00 2.34
42 43 3.503365 TCGAAGAAAGGTCCTGGTAAGA 58.497 45.455 0.00 0.00 0.00 2.10
43 44 3.899360 TCGAAGAAAGGTCCTGGTAAGAA 59.101 43.478 0.00 0.00 0.00 2.52
44 45 4.345837 TCGAAGAAAGGTCCTGGTAAGAAA 59.654 41.667 0.00 0.00 0.00 2.52
46 47 5.510861 CGAAGAAAGGTCCTGGTAAGAAAGA 60.511 44.000 0.00 0.00 0.00 2.52
47 48 5.906772 AGAAAGGTCCTGGTAAGAAAGAA 57.093 39.130 0.00 0.00 0.00 2.52
48 49 5.622180 AGAAAGGTCCTGGTAAGAAAGAAC 58.378 41.667 0.00 0.00 0.00 3.01
49 50 5.132144 AGAAAGGTCCTGGTAAGAAAGAACA 59.868 40.000 0.00 0.00 0.00 3.18
50 51 5.382664 AAGGTCCTGGTAAGAAAGAACAA 57.617 39.130 0.00 0.00 0.00 2.83
52 53 5.377478 AGGTCCTGGTAAGAAAGAACAAAG 58.623 41.667 0.00 0.00 0.00 2.77
53 54 5.104067 AGGTCCTGGTAAGAAAGAACAAAGT 60.104 40.000 0.00 0.00 0.00 2.66
54 55 6.100714 AGGTCCTGGTAAGAAAGAACAAAGTA 59.899 38.462 0.00 0.00 0.00 2.24
55 56 6.204301 GGTCCTGGTAAGAAAGAACAAAGTAC 59.796 42.308 0.00 0.00 0.00 2.73
56 57 6.764560 GTCCTGGTAAGAAAGAACAAAGTACA 59.235 38.462 0.00 0.00 0.00 2.90
57 58 7.444487 GTCCTGGTAAGAAAGAACAAAGTACAT 59.556 37.037 0.00 0.00 0.00 2.29
58 59 8.653191 TCCTGGTAAGAAAGAACAAAGTACATA 58.347 33.333 0.00 0.00 0.00 2.29
60 61 8.319143 TGGTAAGAAAGAACAAAGTACATAGC 57.681 34.615 0.00 0.00 0.00 2.97
61 62 8.154856 TGGTAAGAAAGAACAAAGTACATAGCT 58.845 33.333 0.00 0.00 0.00 3.32
62 63 9.649167 GGTAAGAAAGAACAAAGTACATAGCTA 57.351 33.333 0.00 0.00 0.00 3.32
65 66 9.555727 AAGAAAGAACAAAGTACATAGCTAACA 57.444 29.630 0.00 0.00 0.00 2.41
66 67 9.555727 AGAAAGAACAAAGTACATAGCTAACAA 57.444 29.630 0.00 0.00 0.00 2.83
67 68 9.813080 GAAAGAACAAAGTACATAGCTAACAAG 57.187 33.333 0.00 0.00 0.00 3.16
68 69 9.555727 AAAGAACAAAGTACATAGCTAACAAGA 57.444 29.630 0.00 0.00 0.00 3.02
69 70 9.555727 AAGAACAAAGTACATAGCTAACAAGAA 57.444 29.630 0.00 0.00 0.00 2.52
70 71 9.209175 AGAACAAAGTACATAGCTAACAAGAAG 57.791 33.333 0.00 0.00 0.00 2.85
72 73 7.676947 ACAAAGTACATAGCTAACAAGAAGGA 58.323 34.615 0.00 0.00 0.00 3.36
75 76 7.719871 AGTACATAGCTAACAAGAAGGAAGA 57.280 36.000 0.00 0.00 0.00 2.87
76 77 8.135382 AGTACATAGCTAACAAGAAGGAAGAA 57.865 34.615 0.00 0.00 0.00 2.52
77 78 8.594550 AGTACATAGCTAACAAGAAGGAAGAAA 58.405 33.333 0.00 0.00 0.00 2.52
78 79 9.216117 GTACATAGCTAACAAGAAGGAAGAAAA 57.784 33.333 0.00 0.00 0.00 2.29
79 80 8.100508 ACATAGCTAACAAGAAGGAAGAAAAC 57.899 34.615 0.00 0.00 0.00 2.43
80 81 7.719633 ACATAGCTAACAAGAAGGAAGAAAACA 59.280 33.333 0.00 0.00 0.00 2.83
81 82 8.734386 CATAGCTAACAAGAAGGAAGAAAACAT 58.266 33.333 0.00 0.00 0.00 2.71
82 83 6.974965 AGCTAACAAGAAGGAAGAAAACATG 58.025 36.000 0.00 0.00 0.00 3.21
83 84 6.772716 AGCTAACAAGAAGGAAGAAAACATGA 59.227 34.615 0.00 0.00 0.00 3.07
85 86 7.041098 GCTAACAAGAAGGAAGAAAACATGAGA 60.041 37.037 0.00 0.00 0.00 3.27
86 87 7.645058 AACAAGAAGGAAGAAAACATGAGAA 57.355 32.000 0.00 0.00 0.00 2.87
87 88 7.645058 ACAAGAAGGAAGAAAACATGAGAAA 57.355 32.000 0.00 0.00 0.00 2.52
88 89 8.066612 ACAAGAAGGAAGAAAACATGAGAAAA 57.933 30.769 0.00 0.00 0.00 2.29
90 91 7.888250 AGAAGGAAGAAAACATGAGAAAACT 57.112 32.000 0.00 0.00 0.00 2.66
91 92 8.980481 AGAAGGAAGAAAACATGAGAAAACTA 57.020 30.769 0.00 0.00 0.00 2.24
92 93 8.841300 AGAAGGAAGAAAACATGAGAAAACTAC 58.159 33.333 0.00 0.00 0.00 2.73
93 94 7.511959 AGGAAGAAAACATGAGAAAACTACC 57.488 36.000 0.00 0.00 0.00 3.18
94 95 7.060421 AGGAAGAAAACATGAGAAAACTACCA 58.940 34.615 0.00 0.00 0.00 3.25
95 96 7.725844 AGGAAGAAAACATGAGAAAACTACCAT 59.274 33.333 0.00 0.00 0.00 3.55
99 100 6.959639 AAACATGAGAAAACTACCATGTGT 57.040 33.333 0.00 0.00 46.00 3.72
100 101 6.959639 AACATGAGAAAACTACCATGTGTT 57.040 33.333 0.00 0.00 46.00 3.32
101 102 6.959639 ACATGAGAAAACTACCATGTGTTT 57.040 33.333 0.00 0.00 45.29 2.83
102 103 8.458573 AACATGAGAAAACTACCATGTGTTTA 57.541 30.769 0.00 0.00 46.00 2.01
104 105 7.719633 ACATGAGAAAACTACCATGTGTTTACT 59.280 33.333 0.00 0.00 45.29 2.24
107 108 9.616156 TGAGAAAACTACCATGTGTTTACTAAA 57.384 29.630 8.46 0.00 35.63 1.85
134 135 9.487790 ACAAATGATGTTTCGGTTTTTCATATT 57.512 25.926 0.00 0.00 40.06 1.28
136 137 9.927668 AAATGATGTTTCGGTTTTTCATATTCT 57.072 25.926 0.00 0.00 0.00 2.40
138 139 7.240674 TGATGTTTCGGTTTTTCATATTCTCG 58.759 34.615 0.00 0.00 0.00 4.04
139 140 6.788684 TGTTTCGGTTTTTCATATTCTCGA 57.211 33.333 0.00 0.00 0.00 4.04
140 141 7.192148 TGTTTCGGTTTTTCATATTCTCGAA 57.808 32.000 0.00 0.00 34.32 3.71
142 143 7.748683 TGTTTCGGTTTTTCATATTCTCGAATG 59.251 33.333 2.52 0.00 35.75 2.67
143 144 7.603963 TTCGGTTTTTCATATTCTCGAATGA 57.396 32.000 2.52 0.00 31.79 2.57
146 147 6.456853 CGGTTTTTCATATTCTCGAATGAGCA 60.457 38.462 2.52 0.00 42.26 4.26
147 148 7.250569 GGTTTTTCATATTCTCGAATGAGCAA 58.749 34.615 2.52 0.00 42.26 3.91
148 149 7.218963 GGTTTTTCATATTCTCGAATGAGCAAC 59.781 37.037 2.52 10.15 42.26 4.17
149 150 7.615582 TTTTCATATTCTCGAATGAGCAACT 57.384 32.000 2.52 0.00 42.26 3.16
150 151 7.615582 TTTCATATTCTCGAATGAGCAACTT 57.384 32.000 2.52 0.00 42.26 2.66
151 152 7.615582 TTCATATTCTCGAATGAGCAACTTT 57.384 32.000 2.52 0.00 42.26 2.66
152 153 7.615582 TCATATTCTCGAATGAGCAACTTTT 57.384 32.000 2.52 0.00 42.26 2.27
153 154 7.466805 TCATATTCTCGAATGAGCAACTTTTG 58.533 34.615 2.52 0.00 42.26 2.44
154 155 5.947228 ATTCTCGAATGAGCAACTTTTGA 57.053 34.783 0.00 0.00 42.26 2.69
156 157 4.126437 TCTCGAATGAGCAACTTTTGACA 58.874 39.130 0.00 0.00 42.26 3.58
157 158 4.574421 TCTCGAATGAGCAACTTTTGACAA 59.426 37.500 0.00 0.00 42.26 3.18
158 159 5.065859 TCTCGAATGAGCAACTTTTGACAAA 59.934 36.000 0.00 0.00 42.26 2.83
159 160 5.830912 TCGAATGAGCAACTTTTGACAAAT 58.169 33.333 0.50 0.00 0.00 2.32
161 162 7.421599 TCGAATGAGCAACTTTTGACAAATAA 58.578 30.769 0.50 0.00 0.00 1.40
162 163 8.081633 TCGAATGAGCAACTTTTGACAAATAAT 58.918 29.630 0.50 0.00 0.00 1.28
163 164 9.340695 CGAATGAGCAACTTTTGACAAATAATA 57.659 29.630 0.50 0.00 0.00 0.98
169 170 9.816354 AGCAACTTTTGACAAATAATAAACTGT 57.184 25.926 0.50 0.00 0.00 3.55
170 171 9.848172 GCAACTTTTGACAAATAATAAACTGTG 57.152 29.630 0.50 0.00 0.00 3.66
187 188 4.944048 ACTGTGTTACTTTTTGGATTGGC 58.056 39.130 0.00 0.00 0.00 4.52
188 189 4.202212 ACTGTGTTACTTTTTGGATTGGCC 60.202 41.667 0.00 0.00 37.10 5.36
202 203 2.507339 TTGGCCAGCTTTTTCTTTCG 57.493 45.000 5.11 0.00 0.00 3.46
215 216 3.594603 TTCTTTCGGGTTGCACAAAAA 57.405 38.095 0.00 0.00 0.00 1.94
246 247 6.771076 TGTGTGAAATCTGCGATACAATTAC 58.229 36.000 0.00 0.00 0.00 1.89
258 259 7.851508 TGCGATACAATTACAGCTAAGAAATC 58.148 34.615 0.00 0.00 0.00 2.17
268 269 8.506168 TTACAGCTAAGAAATCCAAATGTAGG 57.494 34.615 0.00 0.00 0.00 3.18
269 270 5.888161 ACAGCTAAGAAATCCAAATGTAGGG 59.112 40.000 0.00 0.00 0.00 3.53
277 278 6.667848 AGAAATCCAAATGTAGGGTTTTAGGG 59.332 38.462 0.00 0.00 39.49 3.53
288 289 1.965643 GGTTTTAGGGTTTGGTGGTCC 59.034 52.381 0.00 0.00 0.00 4.46
311 312 9.052759 GTCCAAGATAAAGAAACTTGACTACAA 57.947 33.333 0.00 0.00 42.12 2.41
325 326 6.817765 TTGACTACAAGCTATTTTTGGGAG 57.182 37.500 0.00 0.00 0.00 4.30
335 336 4.752604 GCTATTTTTGGGAGTAGAGCTAGC 59.247 45.833 6.62 6.62 0.00 3.42
341 342 4.362470 TGGGAGTAGAGCTAGCGTATTA 57.638 45.455 9.55 0.00 0.00 0.98
345 346 6.094061 GGGAGTAGAGCTAGCGTATTAATTG 58.906 44.000 9.55 0.00 0.00 2.32
351 352 5.760253 AGAGCTAGCGTATTAATTGTGCATT 59.240 36.000 9.55 0.00 0.00 3.56
355 356 7.173218 AGCTAGCGTATTAATTGTGCATTATGT 59.827 33.333 9.55 0.00 0.00 2.29
356 357 7.269084 GCTAGCGTATTAATTGTGCATTATGTG 59.731 37.037 0.00 0.00 0.00 3.21
415 416 9.039870 GTATATTGTTCATGCATATCCTCTAGC 57.960 37.037 0.00 0.00 0.00 3.42
420 421 5.509832 TCATGCATATCCTCTAGCCAATT 57.490 39.130 0.00 0.00 0.00 2.32
466 468 5.523552 GCCAATTTTACTTATTCATGTGGGC 59.476 40.000 0.00 0.00 0.00 5.36
473 475 2.254546 TATTCATGTGGGCGATGGAC 57.745 50.000 0.00 0.00 0.00 4.02
529 531 8.815565 ACATTGTACCATAAACCAATACATCA 57.184 30.769 0.00 0.00 0.00 3.07
530 532 9.249053 ACATTGTACCATAAACCAATACATCAA 57.751 29.630 0.00 0.00 0.00 2.57
531 533 9.515020 CATTGTACCATAAACCAATACATCAAC 57.485 33.333 0.00 0.00 0.00 3.18
532 534 7.633193 TGTACCATAAACCAATACATCAACC 57.367 36.000 0.00 0.00 0.00 3.77
533 535 7.175797 TGTACCATAAACCAATACATCAACCA 58.824 34.615 0.00 0.00 0.00 3.67
534 536 7.670140 TGTACCATAAACCAATACATCAACCAA 59.330 33.333 0.00 0.00 0.00 3.67
535 537 7.169158 ACCATAAACCAATACATCAACCAAG 57.831 36.000 0.00 0.00 0.00 3.61
536 538 6.154363 ACCATAAACCAATACATCAACCAAGG 59.846 38.462 0.00 0.00 0.00 3.61
538 540 7.340743 CCATAAACCAATACATCAACCAAGGTA 59.659 37.037 0.00 0.00 0.00 3.08
540 542 7.604657 AAACCAATACATCAACCAAGGTAAA 57.395 32.000 0.00 0.00 0.00 2.01
541 543 7.604657 AACCAATACATCAACCAAGGTAAAA 57.395 32.000 0.00 0.00 0.00 1.52
542 544 7.604657 ACCAATACATCAACCAAGGTAAAAA 57.395 32.000 0.00 0.00 0.00 1.94
633 639 6.127479 GCCAGGAAACAACATGTAATATGGAA 60.127 38.462 0.00 0.00 0.00 3.53
643 649 7.559590 ACATGTAATATGGAACTTTCTGAGC 57.440 36.000 0.00 0.00 0.00 4.26
659 665 1.268999 TGAGCGGTGCAAACATGAAAC 60.269 47.619 0.00 0.00 0.00 2.78
666 673 3.256631 GGTGCAAACATGAAACTCTCCAT 59.743 43.478 0.00 0.00 0.00 3.41
673 681 4.521146 ACATGAAACTCTCCATCATCACC 58.479 43.478 0.00 0.00 31.65 4.02
690 715 6.744112 TCATCACCTCAAATTAACCACAAAC 58.256 36.000 0.00 0.00 0.00 2.93
692 717 7.721842 TCATCACCTCAAATTAACCACAAACTA 59.278 33.333 0.00 0.00 0.00 2.24
694 719 7.057894 TCACCTCAAATTAACCACAAACTAGT 58.942 34.615 0.00 0.00 0.00 2.57
705 730 6.630203 ACCACAAACTAGTCCCAACATATA 57.370 37.500 0.00 0.00 0.00 0.86
813 1218 1.531365 CACACCCCACAGCAACCAT 60.531 57.895 0.00 0.00 0.00 3.55
817 1222 1.746615 CCCCACAGCAACCATCTCG 60.747 63.158 0.00 0.00 0.00 4.04
855 1262 7.430441 GCCCTAGCTAGCTATAGAATATCAAC 58.570 42.308 24.36 1.20 35.50 3.18
950 1368 1.073763 AGCCCACATAAGCACACAGAA 59.926 47.619 0.00 0.00 0.00 3.02
984 1409 1.358759 CACACGCCAAGAAACCACC 59.641 57.895 0.00 0.00 0.00 4.61
995 1420 2.096248 AGAAACCACCGAAAAGCAACA 58.904 42.857 0.00 0.00 0.00 3.33
1108 1536 4.699522 GAACACCGCCGAGGCCTT 62.700 66.667 6.77 0.00 46.52 4.35
1291 2529 3.885521 GCGCCTACGACGTAGCCT 61.886 66.667 26.14 0.00 43.93 4.58
1389 2627 0.461548 CGCACTCCAAGGCTGAGATA 59.538 55.000 8.69 0.00 33.95 1.98
1392 2630 2.741228 GCACTCCAAGGCTGAGATAGTG 60.741 54.545 8.69 11.62 36.74 2.74
1422 2660 1.437986 GAAGCAGACCTACGCCGAT 59.562 57.895 0.00 0.00 0.00 4.18
1425 2663 1.141019 GCAGACCTACGCCGATGAA 59.859 57.895 0.00 0.00 0.00 2.57
1524 2762 3.003763 GAGAAGGCCGTGACCCCT 61.004 66.667 0.00 0.00 0.00 4.79
1554 2792 0.806102 GCAAGCTCAATCGCCTCGTA 60.806 55.000 0.00 0.00 0.00 3.43
1752 2990 2.042230 GTCCGGGAGAAGGGCCTA 60.042 66.667 6.41 0.00 0.00 3.93
1773 3011 3.224324 GCCGGCGACTCCATCCTA 61.224 66.667 12.58 0.00 34.01 2.94
1786 3024 1.413382 CATCCTATTCTCGTGCTCGC 58.587 55.000 2.69 0.00 36.96 5.03
1787 3025 1.000827 CATCCTATTCTCGTGCTCGCT 60.001 52.381 2.69 0.00 36.96 4.93
1833 3071 2.890808 TCGACTGCAAGAAGAACACT 57.109 45.000 0.00 0.00 37.43 3.55
1835 3073 3.902150 TCGACTGCAAGAAGAACACTAG 58.098 45.455 0.00 0.00 37.43 2.57
1845 3098 3.258372 AGAAGAACACTAGCATGAACGGA 59.742 43.478 0.00 0.00 0.00 4.69
1882 3135 1.918293 CTGCCAGTGGGGGTGACTA 60.918 63.158 12.15 0.00 37.04 2.59
1899 3152 5.123936 GTGACTACCAAAGGAGAACAAGTT 58.876 41.667 0.00 0.00 0.00 2.66
1914 3167 0.523072 AAGTTCGCGTCGTTAGGCTA 59.477 50.000 5.77 0.00 34.30 3.93
1930 3183 1.067212 GGCTATTCGGTGTCGACATCT 59.933 52.381 25.40 10.55 45.92 2.90
1932 3185 2.640831 CTATTCGGTGTCGACATCTCG 58.359 52.381 25.40 24.24 45.92 4.04
2045 3304 4.096003 TGCCCTAGGTGCCTTCGC 62.096 66.667 16.71 8.10 0.00 4.70
2071 3330 1.134280 AGCATCTGCACATACACCTCC 60.134 52.381 4.79 0.00 45.16 4.30
2081 3340 5.359576 TGCACATACACCTCCATATTTTTCC 59.640 40.000 0.00 0.00 0.00 3.13
2083 3342 5.008613 CACATACACCTCCATATTTTTCCCG 59.991 44.000 0.00 0.00 0.00 5.14
2085 3344 2.578940 ACACCTCCATATTTTTCCCGGA 59.421 45.455 0.73 0.00 0.00 5.14
2086 3345 3.214328 CACCTCCATATTTTTCCCGGAG 58.786 50.000 0.73 0.00 42.46 4.63
2088 3347 3.268595 ACCTCCATATTTTTCCCGGAGTT 59.731 43.478 0.73 0.00 41.45 3.01
2092 3351 6.031751 TCCATATTTTTCCCGGAGTTTTTG 57.968 37.500 0.73 0.00 0.00 2.44
2095 3354 3.423996 TTTTTCCCGGAGTTTTTGTCG 57.576 42.857 0.73 0.00 0.00 4.35
2101 3360 1.145803 CGGAGTTTTTGTCGTCCCTC 58.854 55.000 0.00 0.00 0.00 4.30
2109 3368 5.070047 AGTTTTTGTCGTCCCTCTTCTTCTA 59.930 40.000 0.00 0.00 0.00 2.10
2111 3370 2.093106 TGTCGTCCCTCTTCTTCTAGC 58.907 52.381 0.00 0.00 0.00 3.42
2114 3373 1.202359 CGTCCCTCTTCTTCTAGCTGC 60.202 57.143 0.00 0.00 0.00 5.25
2116 3375 2.499693 GTCCCTCTTCTTCTAGCTGCTT 59.500 50.000 7.79 0.00 0.00 3.91
2117 3376 2.499289 TCCCTCTTCTTCTAGCTGCTTG 59.501 50.000 7.79 6.03 0.00 4.01
2118 3377 2.235898 CCCTCTTCTTCTAGCTGCTTGT 59.764 50.000 7.79 0.00 0.00 3.16
2120 3379 4.081420 CCCTCTTCTTCTAGCTGCTTGTTA 60.081 45.833 7.79 0.00 0.00 2.41
2121 3380 5.482908 CCTCTTCTTCTAGCTGCTTGTTAA 58.517 41.667 7.79 1.88 0.00 2.01
2127 3392 7.133891 TCTTCTAGCTGCTTGTTAAATTGTC 57.866 36.000 7.79 0.00 0.00 3.18
2134 3400 5.295431 TGCTTGTTAAATTGTCGATCTGG 57.705 39.130 0.00 0.00 0.00 3.86
2149 3415 3.983988 CGATCTGGTCGTGGAATAGAATG 59.016 47.826 1.33 0.00 45.19 2.67
2155 3421 6.884295 TCTGGTCGTGGAATAGAATGATTTTT 59.116 34.615 0.00 0.00 0.00 1.94
2185 3452 6.734137 TCAATTTTGCGTAGAACACATTCTT 58.266 32.000 0.00 0.00 42.91 2.52
2186 3453 7.866729 TCAATTTTGCGTAGAACACATTCTTA 58.133 30.769 0.00 0.00 42.91 2.10
2187 3454 8.346300 TCAATTTTGCGTAGAACACATTCTTAA 58.654 29.630 0.00 0.00 42.91 1.85
2221 3594 3.998341 GCAAAATGAGTTGGCACATCAAT 59.002 39.130 5.05 0.00 39.30 2.57
2236 3612 5.981315 GCACATCAATAAGTTCCATTCCATG 59.019 40.000 0.00 0.00 0.00 3.66
2238 3614 7.201812 GCACATCAATAAGTTCCATTCCATGTA 60.202 37.037 0.00 0.00 0.00 2.29
2252 3628 7.229306 TCCATTCCATGTAATAAAGAGATGTGC 59.771 37.037 0.00 0.00 0.00 4.57
2255 3631 7.792374 TCCATGTAATAAAGAGATGTGCTTC 57.208 36.000 0.00 0.00 0.00 3.86
2256 3632 6.767902 TCCATGTAATAAAGAGATGTGCTTCC 59.232 38.462 0.00 0.00 0.00 3.46
2266 3642 4.940046 AGAGATGTGCTTCCTGTATGTTTG 59.060 41.667 0.00 0.00 0.00 2.93
2267 3643 4.012374 AGATGTGCTTCCTGTATGTTTGG 58.988 43.478 0.00 0.00 0.00 3.28
2273 3649 4.701651 TGCTTCCTGTATGTTTGGATGAAG 59.298 41.667 0.00 0.00 0.00 3.02
2288 3664 4.456911 TGGATGAAGATTTGTTCACTGCTC 59.543 41.667 0.00 0.00 39.25 4.26
2289 3665 4.699257 GGATGAAGATTTGTTCACTGCTCT 59.301 41.667 0.00 0.00 39.25 4.09
2294 3670 9.624373 ATGAAGATTTGTTCACTGCTCTATATT 57.376 29.630 0.00 0.00 39.25 1.28
2299 3678 6.816134 TTGTTCACTGCTCTATATTGCAAA 57.184 33.333 1.71 0.00 38.81 3.68
2304 3683 6.798482 TCACTGCTCTATATTGCAAAATTGG 58.202 36.000 1.71 0.00 38.81 3.16
2328 3707 6.761242 GGTTTTGCAACTCCAATTAATATCCC 59.239 38.462 0.00 0.00 32.90 3.85
2335 3714 4.665009 ACTCCAATTAATATCCCCTCAGCA 59.335 41.667 0.00 0.00 0.00 4.41
2336 3715 5.222007 ACTCCAATTAATATCCCCTCAGCAG 60.222 44.000 0.00 0.00 0.00 4.24
2365 3744 9.793252 ATATAAGCAAGCAGTTAGAAATGTTTG 57.207 29.630 12.92 12.92 44.34 2.93
2414 3799 3.951775 AACATTTTGGGCGCTGAATTA 57.048 38.095 7.64 0.00 0.00 1.40
2458 3843 9.382244 GTGTTACAATTGATTTCACTAGTTCAC 57.618 33.333 13.59 0.81 0.00 3.18
2461 3846 9.554395 TTACAATTGATTTCACTAGTTCACTCA 57.446 29.630 13.59 0.00 0.00 3.41
2462 3847 7.865707 ACAATTGATTTCACTAGTTCACTCAC 58.134 34.615 13.59 0.00 0.00 3.51
2466 3851 5.934043 TGATTTCACTAGTTCACTCACATGG 59.066 40.000 0.00 0.00 0.00 3.66
2467 3852 3.319137 TCACTAGTTCACTCACATGGC 57.681 47.619 0.00 0.00 0.00 4.40
2474 3859 5.171339 AGTTCACTCACATGGCTAGATTT 57.829 39.130 0.00 0.00 0.00 2.17
2479 3864 4.093998 CACTCACATGGCTAGATTTGTCAC 59.906 45.833 0.00 0.00 0.00 3.67
2491 3876 6.538021 GCTAGATTTGTCACTGTCATCTTCAT 59.462 38.462 0.00 0.00 0.00 2.57
2493 3878 7.142306 AGATTTGTCACTGTCATCTTCATTG 57.858 36.000 0.00 0.00 0.00 2.82
2516 3901 6.887013 TGGCAGACATTTTTGGCATATATTT 58.113 32.000 0.00 0.00 43.78 1.40
2518 3903 6.985645 GGCAGACATTTTTGGCATATATTTCA 59.014 34.615 0.00 0.00 39.44 2.69
2519 3904 7.170320 GGCAGACATTTTTGGCATATATTTCAG 59.830 37.037 0.00 0.00 39.44 3.02
2552 3937 7.633621 TGATTCAATTGATCATAAGTTCGAGC 58.366 34.615 9.40 0.00 0.00 5.03
2554 3939 7.558161 TTCAATTGATCATAAGTTCGAGCAT 57.442 32.000 9.40 0.00 0.00 3.79
2586 3976 8.076910 TGTGTGGATTTGGCTATAATTGAAAT 57.923 30.769 0.00 0.00 0.00 2.17
2587 3977 7.980662 TGTGTGGATTTGGCTATAATTGAAATG 59.019 33.333 0.00 0.00 0.00 2.32
2588 3978 7.981225 GTGTGGATTTGGCTATAATTGAAATGT 59.019 33.333 0.00 0.00 0.00 2.71
2589 3979 8.196771 TGTGGATTTGGCTATAATTGAAATGTC 58.803 33.333 0.00 0.00 0.00 3.06
2597 3992 6.422223 GCTATAATTGAAATGTCACTCACCG 58.578 40.000 0.00 0.00 31.90 4.94
2598 3993 6.037172 GCTATAATTGAAATGTCACTCACCGT 59.963 38.462 0.00 0.00 31.90 4.83
2618 4013 4.566360 CCGTTTGTTTGCTTCAACTTCATT 59.434 37.500 0.00 0.00 0.00 2.57
2652 4047 7.953005 TTTTGCATTTCATATACCCAAGAGA 57.047 32.000 0.00 0.00 0.00 3.10
2661 4056 6.057533 TCATATACCCAAGAGAAGTGCATTG 58.942 40.000 0.00 0.00 0.00 2.82
2662 4057 2.957402 ACCCAAGAGAAGTGCATTGA 57.043 45.000 0.00 0.00 0.00 2.57
2676 4955 8.781196 AGAAGTGCATTGATTTATATGTAGCTG 58.219 33.333 0.00 0.00 0.00 4.24
2696 4975 9.937175 GTAGCTGTCAATTAATGTTTATCTTCC 57.063 33.333 0.00 0.00 0.00 3.46
2698 4977 6.912591 GCTGTCAATTAATGTTTATCTTCCCG 59.087 38.462 0.00 0.00 0.00 5.14
2701 4980 7.094162 TGTCAATTAATGTTTATCTTCCCGCAA 60.094 33.333 0.00 0.00 0.00 4.85
2702 4981 7.757624 GTCAATTAATGTTTATCTTCCCGCAAA 59.242 33.333 0.00 0.00 0.00 3.68
2733 5022 7.715265 GTTCATCATCACGAACCTATTGTAT 57.285 36.000 0.00 0.00 36.36 2.29
2742 5076 8.786826 TCACGAACCTATTGTATTTGATCTTT 57.213 30.769 0.00 0.00 0.00 2.52
2819 5182 8.134895 TCTAACTACTGCACTTTTTCAAAATGG 58.865 33.333 1.21 0.00 0.00 3.16
2822 5185 4.111916 ACTGCACTTTTTCAAAATGGTCG 58.888 39.130 1.21 0.00 0.00 4.79
2826 5189 4.688021 CACTTTTTCAAAATGGTCGGGAA 58.312 39.130 1.21 0.00 0.00 3.97
2827 5190 5.296748 CACTTTTTCAAAATGGTCGGGAAT 58.703 37.500 1.21 0.00 0.00 3.01
2832 5195 7.954788 TTTTCAAAATGGTCGGGAATTTTAG 57.045 32.000 0.00 0.00 34.92 1.85
2833 5196 6.902771 TTCAAAATGGTCGGGAATTTTAGA 57.097 33.333 0.00 0.00 34.92 2.10
2865 5228 7.667219 ACTTATGAACATGCTATATTCCAAGGG 59.333 37.037 0.00 0.00 0.00 3.95
2872 5235 5.387113 TGCTATATTCCAAGGGTCACATT 57.613 39.130 0.00 0.00 0.00 2.71
2884 5247 7.671819 TCCAAGGGTCACATTCATTTATGTTAA 59.328 33.333 0.00 0.00 36.64 2.01
2888 5251 9.874205 AGGGTCACATTCATTTATGTTAATTTG 57.126 29.630 0.00 0.00 36.64 2.32
2916 5279 5.606348 TTGTTTGTGGGCTTTGAGTTATT 57.394 34.783 0.00 0.00 0.00 1.40
2920 5283 7.731054 TGTTTGTGGGCTTTGAGTTATTTAAT 58.269 30.769 0.00 0.00 0.00 1.40
2926 5289 9.736023 GTGGGCTTTGAGTTATTTAATAATCTG 57.264 33.333 0.47 0.00 0.00 2.90
2963 5327 6.761099 TTGCCAGACTTGTTTTAGTTGTAA 57.239 33.333 0.00 0.00 0.00 2.41
2994 5358 6.202188 ACATATACCGCTGCACAAAAGTATAC 59.798 38.462 0.00 0.00 0.00 1.47
3003 5367 4.329801 TGCACAAAAGTATACTGATGAGCG 59.670 41.667 23.08 13.86 34.32 5.03
3005 5369 5.235186 GCACAAAAGTATACTGATGAGCGAT 59.765 40.000 19.62 0.00 0.00 4.58
3006 5370 6.643845 CACAAAAGTATACTGATGAGCGATG 58.356 40.000 19.62 7.74 0.00 3.84
3008 5372 6.477033 ACAAAAGTATACTGATGAGCGATGAC 59.523 38.462 19.62 0.00 0.00 3.06
3020 5384 5.883328 TGAGCGATGACAACGTTAATATC 57.117 39.130 0.00 4.24 0.00 1.63
3030 5395 6.923508 TGACAACGTTAATATCAGCTATGGAG 59.076 38.462 0.00 0.00 0.00 3.86
3044 5409 7.056006 TCAGCTATGGAGATTTATTTGAAGCA 58.944 34.615 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.054390 GATCTTCATGATCTAGGACGGAC 57.946 47.826 0.00 0.00 46.05 4.79
10 11 5.465056 GGACCTTTCTTCGATCTTCATGATC 59.535 44.000 0.00 0.00 46.07 2.92
11 12 5.130145 AGGACCTTTCTTCGATCTTCATGAT 59.870 40.000 0.00 0.00 38.27 2.45
12 13 4.467795 AGGACCTTTCTTCGATCTTCATGA 59.532 41.667 0.00 0.00 0.00 3.07
13 14 4.569966 CAGGACCTTTCTTCGATCTTCATG 59.430 45.833 0.00 0.00 0.00 3.07
15 16 3.055819 CCAGGACCTTTCTTCGATCTTCA 60.056 47.826 0.00 0.00 0.00 3.02
16 17 3.055747 ACCAGGACCTTTCTTCGATCTTC 60.056 47.826 0.00 0.00 0.00 2.87
17 18 2.907042 ACCAGGACCTTTCTTCGATCTT 59.093 45.455 0.00 0.00 0.00 2.40
18 19 2.541466 ACCAGGACCTTTCTTCGATCT 58.459 47.619 0.00 0.00 0.00 2.75
19 20 4.159879 TCTTACCAGGACCTTTCTTCGATC 59.840 45.833 0.00 0.00 0.00 3.69
20 21 4.094476 TCTTACCAGGACCTTTCTTCGAT 58.906 43.478 0.00 0.00 0.00 3.59
21 22 3.503365 TCTTACCAGGACCTTTCTTCGA 58.497 45.455 0.00 0.00 0.00 3.71
22 23 3.955650 TCTTACCAGGACCTTTCTTCG 57.044 47.619 0.00 0.00 0.00 3.79
23 24 5.866207 TCTTTCTTACCAGGACCTTTCTTC 58.134 41.667 0.00 0.00 0.00 2.87
25 26 5.132144 TGTTCTTTCTTACCAGGACCTTTCT 59.868 40.000 0.00 0.00 0.00 2.52
27 28 5.382664 TGTTCTTTCTTACCAGGACCTTT 57.617 39.130 0.00 0.00 0.00 3.11
29 30 5.104067 ACTTTGTTCTTTCTTACCAGGACCT 60.104 40.000 0.00 0.00 0.00 3.85
30 31 5.131067 ACTTTGTTCTTTCTTACCAGGACC 58.869 41.667 0.00 0.00 0.00 4.46
32 33 6.891388 TGTACTTTGTTCTTTCTTACCAGGA 58.109 36.000 0.00 0.00 0.00 3.86
33 34 7.745620 ATGTACTTTGTTCTTTCTTACCAGG 57.254 36.000 0.00 0.00 0.00 4.45
34 35 8.443937 GCTATGTACTTTGTTCTTTCTTACCAG 58.556 37.037 0.00 0.00 0.00 4.00
35 36 8.154856 AGCTATGTACTTTGTTCTTTCTTACCA 58.845 33.333 0.00 0.00 0.00 3.25
36 37 8.549338 AGCTATGTACTTTGTTCTTTCTTACC 57.451 34.615 0.00 0.00 0.00 2.85
39 40 9.555727 TGTTAGCTATGTACTTTGTTCTTTCTT 57.444 29.630 0.00 0.00 0.00 2.52
41 42 9.813080 CTTGTTAGCTATGTACTTTGTTCTTTC 57.187 33.333 0.00 0.00 0.00 2.62
42 43 9.555727 TCTTGTTAGCTATGTACTTTGTTCTTT 57.444 29.630 0.00 0.00 0.00 2.52
43 44 9.555727 TTCTTGTTAGCTATGTACTTTGTTCTT 57.444 29.630 0.00 0.00 0.00 2.52
44 45 9.209175 CTTCTTGTTAGCTATGTACTTTGTTCT 57.791 33.333 0.00 0.00 0.00 3.01
46 47 8.154856 TCCTTCTTGTTAGCTATGTACTTTGTT 58.845 33.333 0.00 0.00 0.00 2.83
47 48 7.676947 TCCTTCTTGTTAGCTATGTACTTTGT 58.323 34.615 0.00 0.00 0.00 2.83
48 49 8.547967 TTCCTTCTTGTTAGCTATGTACTTTG 57.452 34.615 0.00 0.00 0.00 2.77
49 50 8.594550 TCTTCCTTCTTGTTAGCTATGTACTTT 58.405 33.333 0.00 0.00 0.00 2.66
50 51 8.135382 TCTTCCTTCTTGTTAGCTATGTACTT 57.865 34.615 0.00 0.00 0.00 2.24
52 53 8.773404 TTTCTTCCTTCTTGTTAGCTATGTAC 57.227 34.615 0.00 0.00 0.00 2.90
53 54 9.216117 GTTTTCTTCCTTCTTGTTAGCTATGTA 57.784 33.333 0.00 0.00 0.00 2.29
54 55 7.719633 TGTTTTCTTCCTTCTTGTTAGCTATGT 59.280 33.333 0.00 0.00 0.00 2.29
55 56 8.099364 TGTTTTCTTCCTTCTTGTTAGCTATG 57.901 34.615 0.00 0.00 0.00 2.23
56 57 8.734386 CATGTTTTCTTCCTTCTTGTTAGCTAT 58.266 33.333 0.00 0.00 0.00 2.97
57 58 7.936847 TCATGTTTTCTTCCTTCTTGTTAGCTA 59.063 33.333 0.00 0.00 0.00 3.32
58 59 6.772716 TCATGTTTTCTTCCTTCTTGTTAGCT 59.227 34.615 0.00 0.00 0.00 3.32
60 61 8.383318 TCTCATGTTTTCTTCCTTCTTGTTAG 57.617 34.615 0.00 0.00 0.00 2.34
61 62 8.746052 TTCTCATGTTTTCTTCCTTCTTGTTA 57.254 30.769 0.00 0.00 0.00 2.41
62 63 7.645058 TTCTCATGTTTTCTTCCTTCTTGTT 57.355 32.000 0.00 0.00 0.00 2.83
63 64 7.645058 TTTCTCATGTTTTCTTCCTTCTTGT 57.355 32.000 0.00 0.00 0.00 3.16
65 66 8.298729 AGTTTTCTCATGTTTTCTTCCTTCTT 57.701 30.769 0.00 0.00 0.00 2.52
66 67 7.888250 AGTTTTCTCATGTTTTCTTCCTTCT 57.112 32.000 0.00 0.00 0.00 2.85
67 68 8.076781 GGTAGTTTTCTCATGTTTTCTTCCTTC 58.923 37.037 0.00 0.00 0.00 3.46
68 69 7.559897 TGGTAGTTTTCTCATGTTTTCTTCCTT 59.440 33.333 0.00 0.00 0.00 3.36
69 70 7.060421 TGGTAGTTTTCTCATGTTTTCTTCCT 58.940 34.615 0.00 0.00 0.00 3.36
70 71 7.272037 TGGTAGTTTTCTCATGTTTTCTTCC 57.728 36.000 0.00 0.00 0.00 3.46
72 73 8.137437 CACATGGTAGTTTTCTCATGTTTTCTT 58.863 33.333 5.23 0.00 45.19 2.52
75 76 7.346751 ACACATGGTAGTTTTCTCATGTTTT 57.653 32.000 5.23 0.00 45.19 2.43
76 77 6.959639 ACACATGGTAGTTTTCTCATGTTT 57.040 33.333 5.23 0.00 45.19 2.83
77 78 6.959639 AACACATGGTAGTTTTCTCATGTT 57.040 33.333 5.23 0.00 45.19 2.71
79 80 8.099364 AGTAAACACATGGTAGTTTTCTCATG 57.901 34.615 15.24 0.00 41.74 3.07
80 81 9.787435 TTAGTAAACACATGGTAGTTTTCTCAT 57.213 29.630 16.83 4.31 38.71 2.90
81 82 9.616156 TTTAGTAAACACATGGTAGTTTTCTCA 57.384 29.630 16.83 8.81 38.71 3.27
108 109 9.487790 AATATGAAAAACCGAAACATCATTTGT 57.512 25.926 0.00 0.00 41.53 2.83
110 111 9.927668 AGAATATGAAAAACCGAAACATCATTT 57.072 25.926 0.00 0.00 0.00 2.32
111 112 9.573133 GAGAATATGAAAAACCGAAACATCATT 57.427 29.630 0.00 0.00 0.00 2.57
113 114 7.118535 TCGAGAATATGAAAAACCGAAACATCA 59.881 33.333 0.00 0.00 0.00 3.07
114 115 7.461107 TCGAGAATATGAAAAACCGAAACATC 58.539 34.615 0.00 0.00 0.00 3.06
115 116 7.372451 TCGAGAATATGAAAAACCGAAACAT 57.628 32.000 0.00 0.00 0.00 2.71
116 117 6.788684 TCGAGAATATGAAAAACCGAAACA 57.211 33.333 0.00 0.00 0.00 2.83
119 120 7.603963 TCATTCGAGAATATGAAAAACCGAA 57.396 32.000 0.00 0.00 38.77 4.30
120 121 6.238103 GCTCATTCGAGAATATGAAAAACCGA 60.238 38.462 0.00 0.00 42.34 4.69
121 122 5.904080 GCTCATTCGAGAATATGAAAAACCG 59.096 40.000 0.00 0.00 42.34 4.44
122 123 6.785191 TGCTCATTCGAGAATATGAAAAACC 58.215 36.000 0.00 0.00 42.34 3.27
123 124 7.965107 AGTTGCTCATTCGAGAATATGAAAAAC 59.035 33.333 11.07 11.07 42.34 2.43
125 126 7.615582 AGTTGCTCATTCGAGAATATGAAAA 57.384 32.000 0.00 0.00 42.34 2.29
126 127 7.615582 AAGTTGCTCATTCGAGAATATGAAA 57.384 32.000 0.00 0.00 42.34 2.69
128 129 7.334171 TCAAAAGTTGCTCATTCGAGAATATGA 59.666 33.333 0.00 0.00 42.34 2.15
130 131 7.119699 TGTCAAAAGTTGCTCATTCGAGAATAT 59.880 33.333 0.00 0.00 42.34 1.28
131 132 6.426633 TGTCAAAAGTTGCTCATTCGAGAATA 59.573 34.615 0.00 0.00 42.34 1.75
133 134 4.574421 TGTCAAAAGTTGCTCATTCGAGAA 59.426 37.500 0.00 0.00 42.34 2.87
134 135 4.126437 TGTCAAAAGTTGCTCATTCGAGA 58.874 39.130 0.00 0.00 42.34 4.04
136 137 4.891627 TTGTCAAAAGTTGCTCATTCGA 57.108 36.364 0.00 0.00 0.00 3.71
143 144 9.816354 ACAGTTTATTATTTGTCAAAAGTTGCT 57.184 25.926 1.31 0.00 0.00 3.91
161 162 7.655732 GCCAATCCAAAAAGTAACACAGTTTAT 59.344 33.333 0.00 0.00 0.00 1.40
162 163 6.981559 GCCAATCCAAAAAGTAACACAGTTTA 59.018 34.615 0.00 0.00 0.00 2.01
163 164 5.815222 GCCAATCCAAAAAGTAACACAGTTT 59.185 36.000 0.00 0.00 0.00 2.66
164 165 5.356426 GCCAATCCAAAAAGTAACACAGTT 58.644 37.500 0.00 0.00 0.00 3.16
165 166 4.202212 GGCCAATCCAAAAAGTAACACAGT 60.202 41.667 0.00 0.00 34.01 3.55
166 167 4.202202 TGGCCAATCCAAAAAGTAACACAG 60.202 41.667 0.61 0.00 43.21 3.66
167 168 3.706594 TGGCCAATCCAAAAAGTAACACA 59.293 39.130 0.61 0.00 43.21 3.72
168 169 4.306600 CTGGCCAATCCAAAAAGTAACAC 58.693 43.478 7.01 0.00 46.01 3.32
169 170 3.244044 GCTGGCCAATCCAAAAAGTAACA 60.244 43.478 7.01 0.00 46.01 2.41
170 171 3.006859 AGCTGGCCAATCCAAAAAGTAAC 59.993 43.478 7.01 0.00 46.01 2.50
171 172 3.238597 AGCTGGCCAATCCAAAAAGTAA 58.761 40.909 7.01 0.00 46.01 2.24
172 173 2.888212 AGCTGGCCAATCCAAAAAGTA 58.112 42.857 7.01 0.00 46.01 2.24
173 174 1.720781 AGCTGGCCAATCCAAAAAGT 58.279 45.000 7.01 0.00 46.01 2.66
174 175 2.845363 AAGCTGGCCAATCCAAAAAG 57.155 45.000 7.01 0.00 46.01 2.27
175 176 3.574354 AAAAGCTGGCCAATCCAAAAA 57.426 38.095 7.01 0.00 46.01 1.94
187 188 2.742774 CAACCCGAAAGAAAAAGCTGG 58.257 47.619 0.00 0.00 0.00 4.85
188 189 2.127251 GCAACCCGAAAGAAAAAGCTG 58.873 47.619 0.00 0.00 0.00 4.24
189 190 1.754226 TGCAACCCGAAAGAAAAAGCT 59.246 42.857 0.00 0.00 0.00 3.74
190 191 1.858458 GTGCAACCCGAAAGAAAAAGC 59.142 47.619 0.00 0.00 0.00 3.51
192 193 3.594603 TTGTGCAACCCGAAAGAAAAA 57.405 38.095 0.00 0.00 34.36 1.94
215 216 8.458052 TGTATCGCAGATTTCACACAATATTTT 58.542 29.630 0.00 0.00 45.12 1.82
216 217 7.984391 TGTATCGCAGATTTCACACAATATTT 58.016 30.769 0.00 0.00 45.12 1.40
218 219 7.552458 TTGTATCGCAGATTTCACACAATAT 57.448 32.000 0.00 0.00 45.12 1.28
226 227 5.817296 AGCTGTAATTGTATCGCAGATTTCA 59.183 36.000 0.00 0.00 45.12 2.69
233 234 7.042051 GGATTTCTTAGCTGTAATTGTATCGCA 60.042 37.037 0.00 0.00 0.00 5.10
235 236 8.365399 TGGATTTCTTAGCTGTAATTGTATCG 57.635 34.615 0.00 0.00 0.00 2.92
246 247 5.888161 ACCCTACATTTGGATTTCTTAGCTG 59.112 40.000 0.00 0.00 0.00 4.24
258 259 5.279758 CCAAACCCTAAAACCCTACATTTGG 60.280 44.000 0.00 0.00 38.08 3.28
264 265 3.159472 CCACCAAACCCTAAAACCCTAC 58.841 50.000 0.00 0.00 0.00 3.18
268 269 1.965643 GGACCACCAAACCCTAAAACC 59.034 52.381 0.00 0.00 35.97 3.27
269 270 2.668625 TGGACCACCAAACCCTAAAAC 58.331 47.619 0.00 0.00 43.91 2.43
311 312 5.454045 GCTAGCTCTACTCCCAAAAATAGCT 60.454 44.000 7.70 0.00 41.61 3.32
312 313 4.752604 GCTAGCTCTACTCCCAAAAATAGC 59.247 45.833 7.70 0.00 0.00 2.97
325 326 5.690409 TGCACAATTAATACGCTAGCTCTAC 59.310 40.000 13.93 0.00 0.00 2.59
378 379 8.965819 TGCATGAACAATATACTTTTGGTACAT 58.034 29.630 0.00 0.00 39.30 2.29
379 380 8.341892 TGCATGAACAATATACTTTTGGTACA 57.658 30.769 0.00 0.00 32.72 2.90
446 448 6.239008 CCATCGCCCACATGAATAAGTAAAAT 60.239 38.462 0.00 0.00 0.00 1.82
466 468 1.450848 ACATGCTGGCTGTCCATCG 60.451 57.895 0.00 0.00 42.51 3.84
473 475 1.066215 TGTAGTACCACATGCTGGCTG 60.066 52.381 12.53 0.00 45.32 4.85
509 511 7.633193 TGGTTGATGTATTGGTTTATGGTAC 57.367 36.000 0.00 0.00 0.00 3.34
633 639 0.663153 GTTTGCACCGCTCAGAAAGT 59.337 50.000 0.00 0.00 0.00 2.66
643 649 2.350772 GGAGAGTTTCATGTTTGCACCG 60.351 50.000 0.00 0.00 0.00 4.94
659 665 6.261826 GGTTAATTTGAGGTGATGATGGAGAG 59.738 42.308 0.00 0.00 0.00 3.20
666 673 6.549364 AGTTTGTGGTTAATTTGAGGTGATGA 59.451 34.615 0.00 0.00 0.00 2.92
673 681 6.488683 TGGGACTAGTTTGTGGTTAATTTGAG 59.511 38.462 0.00 0.00 0.00 3.02
690 715 6.732896 AGTGGAGTTATATGTTGGGACTAG 57.267 41.667 0.00 0.00 0.00 2.57
692 717 5.104485 GGAAGTGGAGTTATATGTTGGGACT 60.104 44.000 0.00 0.00 0.00 3.85
694 719 4.785914 TGGAAGTGGAGTTATATGTTGGGA 59.214 41.667 0.00 0.00 0.00 4.37
705 730 3.181458 ACGTTATGTGTGGAAGTGGAGTT 60.181 43.478 0.00 0.00 0.00 3.01
758 788 9.884636 TGTTGGTGTATATATAGATATTGTGGC 57.115 33.333 0.00 0.00 30.57 5.01
813 1218 0.532573 GGCTGGACAAGATGACGAGA 59.467 55.000 0.00 0.00 0.00 4.04
817 1222 1.474143 GCTAGGGCTGGACAAGATGAC 60.474 57.143 0.00 0.00 35.22 3.06
850 1257 7.542534 TGTGTTTACACTTTAAGACGTTGAT 57.457 32.000 13.61 0.00 46.55 2.57
929 1347 0.806868 CTGTGTGCTTATGTGGGCTG 59.193 55.000 0.00 0.00 0.00 4.85
950 1368 2.418628 CGTGTGTTCTTTGGAGTGTGTT 59.581 45.455 0.00 0.00 0.00 3.32
984 1409 1.421382 CCATGGCTTGTTGCTTTTCG 58.579 50.000 0.00 0.00 42.39 3.46
995 1420 0.325577 GATTTCCACCCCCATGGCTT 60.326 55.000 6.09 0.00 39.85 4.35
1094 1522 4.697756 TCAAAGGCCTCGGCGGTG 62.698 66.667 5.23 0.00 43.06 4.94
1105 1533 0.741221 GCGACAGGTAGGCTCAAAGG 60.741 60.000 0.00 0.00 0.00 3.11
1108 1536 1.911269 TGGCGACAGGTAGGCTCAA 60.911 57.895 7.53 0.00 35.01 3.02
1164 1607 3.552384 ACCACGCCCTTGAACCGA 61.552 61.111 0.00 0.00 0.00 4.69
1277 1720 2.103581 GAGCGAGGCTACGTCGTAGG 62.104 65.000 28.67 15.84 42.56 3.18
1314 2552 2.380410 CGGGAAGTTGAAGGCGACG 61.380 63.158 0.00 0.00 33.42 5.12
1316 2554 1.301401 CACGGGAAGTTGAAGGCGA 60.301 57.895 0.00 0.00 0.00 5.54
1321 2559 3.342627 CGCGCACGGGAAGTTGAA 61.343 61.111 8.75 0.00 34.97 2.69
1349 2587 4.168291 CCAGGAAGGCGAGCTCCC 62.168 72.222 8.47 10.58 31.50 4.30
1410 2648 0.248949 GGAGTTCATCGGCGTAGGTC 60.249 60.000 6.85 0.00 0.00 3.85
1503 2741 1.005394 GGTCACGGCCTTCTCGAAA 60.005 57.895 0.00 0.00 0.00 3.46
1524 2762 1.226974 GAGCTTGCCGACATCGCTA 60.227 57.895 0.00 0.00 34.28 4.26
1771 3009 2.376956 GTACAGCGAGCACGAGAATAG 58.623 52.381 8.01 0.00 42.66 1.73
1773 3011 0.523546 CGTACAGCGAGCACGAGAAT 60.524 55.000 8.01 0.00 44.77 2.40
1786 3024 7.508982 AGAACTGCTTCTCCTGTTCGTACAG 62.509 48.000 14.66 14.66 43.87 2.74
1787 3025 1.961394 ACTGCTTCTCCTGTTCGTACA 59.039 47.619 0.00 0.00 0.00 2.90
1833 3071 2.288666 GATTTGCCTCCGTTCATGCTA 58.711 47.619 0.00 0.00 0.00 3.49
1835 3073 0.248215 CGATTTGCCTCCGTTCATGC 60.248 55.000 0.00 0.00 0.00 4.06
1874 3127 2.370849 TGTTCTCCTTTGGTAGTCACCC 59.629 50.000 0.00 0.00 45.11 4.61
1877 3130 5.365619 GAACTTGTTCTCCTTTGGTAGTCA 58.634 41.667 6.28 0.00 0.00 3.41
1882 3135 1.947456 GCGAACTTGTTCTCCTTTGGT 59.053 47.619 11.11 0.00 0.00 3.67
1899 3152 0.316442 CGAATAGCCTAACGACGCGA 60.316 55.000 15.93 0.00 0.00 5.87
1930 3183 2.038975 CCCCCTCTTCACTCCCGA 59.961 66.667 0.00 0.00 0.00 5.14
1932 3185 3.787001 CGCCCCCTCTTCACTCCC 61.787 72.222 0.00 0.00 0.00 4.30
1979 3232 1.815408 GCCTCTTGAACAACTCCTGCA 60.815 52.381 0.00 0.00 0.00 4.41
1982 3235 3.152341 CATTGCCTCTTGAACAACTCCT 58.848 45.455 0.00 0.00 0.00 3.69
2012 3271 4.463879 CAGGAGAGTGCTGGCCGG 62.464 72.222 7.41 7.41 31.71 6.13
2045 3304 4.692625 GGTGTATGTGCAGATGCTATAAGG 59.307 45.833 12.95 0.00 42.66 2.69
2071 3330 5.571357 CGACAAAAACTCCGGGAAAAATATG 59.429 40.000 0.00 0.00 0.00 1.78
2081 3340 0.250166 AGGGACGACAAAAACTCCGG 60.250 55.000 0.00 0.00 0.00 5.14
2083 3342 2.545537 AGAGGGACGACAAAAACTCC 57.454 50.000 0.00 0.00 0.00 3.85
2085 3344 3.840124 AGAAGAGGGACGACAAAAACT 57.160 42.857 0.00 0.00 0.00 2.66
2086 3345 4.127907 AGAAGAAGAGGGACGACAAAAAC 58.872 43.478 0.00 0.00 0.00 2.43
2088 3347 4.560919 GCTAGAAGAAGAGGGACGACAAAA 60.561 45.833 0.00 0.00 0.00 2.44
2092 3351 2.098443 CAGCTAGAAGAAGAGGGACGAC 59.902 54.545 0.00 0.00 0.00 4.34
2095 3354 2.107366 AGCAGCTAGAAGAAGAGGGAC 58.893 52.381 0.00 0.00 0.00 4.46
2101 3360 7.588512 ACAATTTAACAAGCAGCTAGAAGAAG 58.411 34.615 0.00 0.00 0.00 2.85
2109 3368 4.697352 AGATCGACAATTTAACAAGCAGCT 59.303 37.500 0.00 0.00 0.00 4.24
2111 3370 5.106555 ACCAGATCGACAATTTAACAAGCAG 60.107 40.000 0.00 0.00 0.00 4.24
2155 3421 7.030165 TGTGTTCTACGCAAAATTGAAGAAAA 58.970 30.769 0.00 0.00 35.42 2.29
2158 3424 5.743026 TGTGTTCTACGCAAAATTGAAGA 57.257 34.783 0.00 0.00 35.42 2.87
2161 3427 6.312399 AGAATGTGTTCTACGCAAAATTGA 57.688 33.333 0.00 0.00 42.39 2.57
2162 3428 6.991485 AAGAATGTGTTCTACGCAAAATTG 57.009 33.333 0.00 0.00 43.80 2.32
2178 3444 7.624360 TTGCAATCGGACTTATTAAGAATGT 57.376 32.000 10.39 0.00 0.00 2.71
2185 3452 7.624360 ACTCATTTTGCAATCGGACTTATTA 57.376 32.000 0.00 0.00 0.00 0.98
2186 3453 6.515272 ACTCATTTTGCAATCGGACTTATT 57.485 33.333 0.00 0.00 0.00 1.40
2187 3454 6.324819 CAACTCATTTTGCAATCGGACTTAT 58.675 36.000 0.00 0.00 0.00 1.73
2236 3612 8.768955 CATACAGGAAGCACATCTCTTTATTAC 58.231 37.037 0.00 0.00 0.00 1.89
2238 3614 7.341805 ACATACAGGAAGCACATCTCTTTATT 58.658 34.615 0.00 0.00 0.00 1.40
2241 3617 5.171339 ACATACAGGAAGCACATCTCTTT 57.829 39.130 0.00 0.00 0.00 2.52
2252 3628 7.636150 AATCTTCATCCAAACATACAGGAAG 57.364 36.000 0.00 0.00 34.62 3.46
2255 3631 7.161773 ACAAATCTTCATCCAAACATACAGG 57.838 36.000 0.00 0.00 0.00 4.00
2256 3632 8.298854 TGAACAAATCTTCATCCAAACATACAG 58.701 33.333 0.00 0.00 0.00 2.74
2266 3642 4.699257 AGAGCAGTGAACAAATCTTCATCC 59.301 41.667 0.00 0.00 32.78 3.51
2267 3643 5.876612 AGAGCAGTGAACAAATCTTCATC 57.123 39.130 0.00 0.00 32.78 2.92
2273 3649 7.019774 TGCAATATAGAGCAGTGAACAAATC 57.980 36.000 0.00 0.00 35.51 2.17
2304 3683 6.761242 GGGGATATTAATTGGAGTTGCAAAAC 59.239 38.462 0.00 0.00 0.00 2.43
2311 3690 5.134339 TGCTGAGGGGATATTAATTGGAGTT 59.866 40.000 0.00 0.00 0.00 3.01
2314 3693 4.507335 GCTGCTGAGGGGATATTAATTGGA 60.507 45.833 0.00 0.00 0.00 3.53
2321 3700 6.183361 GCTTATATAGCTGCTGAGGGGATATT 60.183 42.308 13.43 0.00 46.77 1.28
2365 3744 5.163963 GCATGTTGCAAAATACTGGTTTAGC 60.164 40.000 0.00 0.00 44.26 3.09
2393 3773 2.837532 ATTCAGCGCCCAAAATGTTT 57.162 40.000 2.29 0.00 0.00 2.83
2395 3775 2.825532 AGTAATTCAGCGCCCAAAATGT 59.174 40.909 2.29 0.00 0.00 2.71
2396 3776 3.508744 AGTAATTCAGCGCCCAAAATG 57.491 42.857 2.29 0.00 0.00 2.32
2398 3778 2.609244 GCAAGTAATTCAGCGCCCAAAA 60.609 45.455 2.29 0.00 0.00 2.44
2399 3779 1.067915 GCAAGTAATTCAGCGCCCAAA 60.068 47.619 2.29 0.00 0.00 3.28
2414 3799 0.178953 ACAATCCAAGGCCAGCAAGT 60.179 50.000 5.01 0.00 0.00 3.16
2442 3827 5.934043 CCATGTGAGTGAACTAGTGAAATCA 59.066 40.000 0.00 0.00 0.00 2.57
2450 3835 4.991153 TCTAGCCATGTGAGTGAACTAG 57.009 45.455 0.00 0.00 31.99 2.57
2458 3843 4.331992 CAGTGACAAATCTAGCCATGTGAG 59.668 45.833 0.00 0.00 0.00 3.51
2461 3846 4.256920 GACAGTGACAAATCTAGCCATGT 58.743 43.478 0.00 0.00 0.00 3.21
2462 3847 4.256110 TGACAGTGACAAATCTAGCCATG 58.744 43.478 0.00 0.00 0.00 3.66
2466 3851 5.871524 TGAAGATGACAGTGACAAATCTAGC 59.128 40.000 0.00 0.00 0.00 3.42
2467 3852 8.388853 CAATGAAGATGACAGTGACAAATCTAG 58.611 37.037 0.00 0.00 35.76 2.43
2474 3859 3.076621 GCCAATGAAGATGACAGTGACA 58.923 45.455 0.00 0.00 35.76 3.58
2479 3864 3.340928 TGTCTGCCAATGAAGATGACAG 58.659 45.455 0.00 0.00 0.00 3.51
2491 3876 4.822685 ATATGCCAAAAATGTCTGCCAA 57.177 36.364 0.00 0.00 0.00 4.52
2493 3878 6.985645 TGAAATATATGCCAAAAATGTCTGCC 59.014 34.615 0.00 0.00 0.00 4.85
2526 3911 8.288208 GCTCGAACTTATGATCAATTGAATCAT 58.712 33.333 24.18 24.18 38.45 2.45
2527 3912 7.280652 TGCTCGAACTTATGATCAATTGAATCA 59.719 33.333 13.09 15.78 0.00 2.57
2528 3913 7.633621 TGCTCGAACTTATGATCAATTGAATC 58.366 34.615 13.09 10.90 0.00 2.52
2529 3914 7.558161 TGCTCGAACTTATGATCAATTGAAT 57.442 32.000 13.09 5.03 0.00 2.57
2532 3917 7.412063 TGAATGCTCGAACTTATGATCAATTG 58.588 34.615 0.00 0.00 0.00 2.32
2534 3919 7.660617 AGATGAATGCTCGAACTTATGATCAAT 59.339 33.333 0.00 0.00 0.00 2.57
2537 3922 7.042187 ACAAGATGAATGCTCGAACTTATGATC 60.042 37.037 0.00 0.00 0.00 2.92
2545 3930 3.425359 CCACACAAGATGAATGCTCGAAC 60.425 47.826 0.00 0.00 0.00 3.95
2552 3937 4.081862 AGCCAAATCCACACAAGATGAATG 60.082 41.667 0.00 0.00 0.00 2.67
2554 3939 3.499338 AGCCAAATCCACACAAGATGAA 58.501 40.909 0.00 0.00 0.00 2.57
2586 3976 1.131504 GCAAACAAACGGTGAGTGACA 59.868 47.619 0.00 0.00 0.00 3.58
2587 3977 1.400494 AGCAAACAAACGGTGAGTGAC 59.600 47.619 0.00 0.00 0.00 3.67
2588 3978 1.745232 AGCAAACAAACGGTGAGTGA 58.255 45.000 0.00 0.00 0.00 3.41
2589 3979 2.159448 TGAAGCAAACAAACGGTGAGTG 60.159 45.455 0.00 0.00 0.00 3.51
2597 3992 9.034544 AGAATAATGAAGTTGAAGCAAACAAAC 57.965 29.630 0.00 0.00 32.21 2.93
2624 4019 8.926374 TCTTGGGTATATGAAATGCAAAATCAT 58.074 29.630 14.27 14.27 37.54 2.45
2625 4020 8.303780 TCTTGGGTATATGAAATGCAAAATCA 57.696 30.769 0.00 0.00 0.00 2.57
2628 4023 7.953005 TCTCTTGGGTATATGAAATGCAAAA 57.047 32.000 0.00 0.00 0.00 2.44
2649 4044 8.997323 AGCTACATATAAATCAATGCACTTCTC 58.003 33.333 0.00 0.00 0.00 2.87
2652 4047 8.455903 ACAGCTACATATAAATCAATGCACTT 57.544 30.769 0.00 0.00 0.00 3.16
2673 4952 6.912591 CGGGAAGATAAACATTAATTGACAGC 59.087 38.462 0.00 0.00 0.00 4.40
2676 4955 6.791303 TGCGGGAAGATAAACATTAATTGAC 58.209 36.000 0.00 0.00 0.00 3.18
2787 5150 9.502091 TGAAAAAGTGCAGTAGTTAGATGTAAT 57.498 29.630 0.00 0.00 0.00 1.89
2819 5182 8.610035 CATAAGTAGGTTTCTAAAATTCCCGAC 58.390 37.037 0.00 0.00 0.00 4.79
2827 5190 9.515226 AGCATGTTCATAAGTAGGTTTCTAAAA 57.485 29.630 0.00 0.00 0.00 1.52
2884 5247 7.337942 TCAAAGCCCACAAACAAAAATACAAAT 59.662 29.630 0.00 0.00 0.00 2.32
2888 5251 5.815222 ACTCAAAGCCCACAAACAAAAATAC 59.185 36.000 0.00 0.00 0.00 1.89
2903 5266 9.952188 GGTCAGATTATTAAATAACTCAAAGCC 57.048 33.333 0.00 0.00 0.00 4.35
2942 5306 6.557110 TGTTTACAACTAAAACAAGTCTGGC 58.443 36.000 0.00 0.00 42.28 4.85
2948 5312 7.985634 ATGTGCTGTTTACAACTAAAACAAG 57.014 32.000 3.33 0.35 43.98 3.16
2966 5330 0.177836 TGTGCAGCGGTATATGTGCT 59.822 50.000 0.00 0.00 40.16 4.40
2970 5334 5.673337 ATACTTTTGTGCAGCGGTATATG 57.327 39.130 0.00 0.00 0.00 1.78
2978 5342 5.728898 GCTCATCAGTATACTTTTGTGCAGC 60.729 44.000 22.15 15.17 30.99 5.25
2981 5345 4.566759 TCGCTCATCAGTATACTTTTGTGC 59.433 41.667 19.49 19.49 0.00 4.57
2994 5358 1.633561 ACGTTGTCATCGCTCATCAG 58.366 50.000 3.21 0.00 0.00 2.90
3003 5367 7.598869 TCCATAGCTGATATTAACGTTGTCATC 59.401 37.037 11.99 10.46 0.00 2.92
3005 5369 6.811954 TCCATAGCTGATATTAACGTTGTCA 58.188 36.000 11.99 8.89 0.00 3.58
3006 5370 7.145985 TCTCCATAGCTGATATTAACGTTGTC 58.854 38.462 11.99 4.59 0.00 3.18
3008 5372 8.539770 AATCTCCATAGCTGATATTAACGTTG 57.460 34.615 11.99 0.00 0.00 4.10
3020 5384 7.228108 TCTGCTTCAAATAAATCTCCATAGCTG 59.772 37.037 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.