Multiple sequence alignment - TraesCS3B01G064600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G064600 chr3B 100.000 4270 0 0 1 4270 36467797 36463528 0.000000e+00 7886.0
1 TraesCS3B01G064600 chr3B 92.078 669 49 2 3026 3694 36433008 36432344 0.000000e+00 939.0
2 TraesCS3B01G064600 chr3B 87.359 443 50 4 3728 4166 36431845 36431405 1.770000e-138 503.0
3 TraesCS3B01G064600 chr3B 90.217 368 28 6 2177 2543 36435603 36435243 1.390000e-129 473.0
4 TraesCS3B01G064600 chr3A 93.239 1908 91 21 1622 3520 30562869 30564747 0.000000e+00 2774.0
5 TraesCS3B01G064600 chr3A 85.509 1601 136 42 68 1629 30560870 30562413 0.000000e+00 1583.0
6 TraesCS3B01G064600 chr3A 89.140 442 45 2 3728 4166 30565254 30565695 8.070000e-152 547.0
7 TraesCS3B01G064600 chr3A 97.778 45 1 0 3593 3637 30564745 30564789 1.270000e-10 78.7
8 TraesCS3B01G064600 chr3A 100.000 29 0 0 3666 3694 30564787 30564815 2.000000e-03 54.7
9 TraesCS3B01G064600 chr2D 84.703 791 81 28 20 777 508406170 508406953 0.000000e+00 754.0
10 TraesCS3B01G064600 chr2D 87.968 507 50 5 904 1400 107854612 107854107 4.760000e-164 588.0
11 TraesCS3B01G064600 chr2D 87.451 510 53 5 901 1400 107815527 107816035 1.030000e-160 577.0
12 TraesCS3B01G064600 chr2D 85.352 512 61 9 900 1400 175746910 175746402 6.330000e-143 518.0
13 TraesCS3B01G064600 chr7B 88.084 621 57 10 168 777 689339889 689340503 0.000000e+00 721.0
14 TraesCS3B01G064600 chr6B 87.395 595 57 13 195 777 208854271 208853683 0.000000e+00 667.0
15 TraesCS3B01G064600 chr1D 86.193 507 59 5 904 1400 416257561 416257056 4.860000e-149 538.0
16 TraesCS3B01G064600 chr1D 85.547 512 61 8 900 1400 212088657 212089166 1.360000e-144 523.0
17 TraesCS3B01G064600 chr1D 96.774 31 1 0 3700 3730 487975608 487975638 8.000000e-03 52.8
18 TraesCS3B01G064600 chr5D 85.742 512 60 7 900 1400 327288767 327288258 2.920000e-146 529.0
19 TraesCS3B01G064600 chr5D 85.156 512 63 8 900 1400 324724756 324725265 2.940000e-141 512.0
20 TraesCS3B01G064600 chr5D 100.000 28 0 0 3703 3730 303254131 303254104 8.000000e-03 52.8
21 TraesCS3B01G064600 chr5D 100.000 28 0 0 3703 3730 332935531 332935504 8.000000e-03 52.8
22 TraesCS3B01G064600 chr7D 85.352 512 62 8 900 1400 50402429 50402938 6.330000e-143 518.0
23 TraesCS3B01G064600 chr3D 100.000 28 0 0 3703 3730 27625161 27625134 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G064600 chr3B 36463528 36467797 4269 True 7886.000000 7886 100.000000 1 4270 1 chr3B.!!$R1 4269
1 TraesCS3B01G064600 chr3B 36431405 36435603 4198 True 638.333333 939 89.884667 2177 4166 3 chr3B.!!$R2 1989
2 TraesCS3B01G064600 chr3A 30560870 30565695 4825 False 1007.480000 2774 93.133200 68 4166 5 chr3A.!!$F1 4098
3 TraesCS3B01G064600 chr2D 508406170 508406953 783 False 754.000000 754 84.703000 20 777 1 chr2D.!!$F2 757
4 TraesCS3B01G064600 chr2D 107854107 107854612 505 True 588.000000 588 87.968000 904 1400 1 chr2D.!!$R1 496
5 TraesCS3B01G064600 chr2D 107815527 107816035 508 False 577.000000 577 87.451000 901 1400 1 chr2D.!!$F1 499
6 TraesCS3B01G064600 chr2D 175746402 175746910 508 True 518.000000 518 85.352000 900 1400 1 chr2D.!!$R2 500
7 TraesCS3B01G064600 chr7B 689339889 689340503 614 False 721.000000 721 88.084000 168 777 1 chr7B.!!$F1 609
8 TraesCS3B01G064600 chr6B 208853683 208854271 588 True 667.000000 667 87.395000 195 777 1 chr6B.!!$R1 582
9 TraesCS3B01G064600 chr1D 416257056 416257561 505 True 538.000000 538 86.193000 904 1400 1 chr1D.!!$R1 496
10 TraesCS3B01G064600 chr1D 212088657 212089166 509 False 523.000000 523 85.547000 900 1400 1 chr1D.!!$F1 500
11 TraesCS3B01G064600 chr5D 327288258 327288767 509 True 529.000000 529 85.742000 900 1400 1 chr5D.!!$R2 500
12 TraesCS3B01G064600 chr5D 324724756 324725265 509 False 512.000000 512 85.156000 900 1400 1 chr5D.!!$F1 500
13 TraesCS3B01G064600 chr7D 50402429 50402938 509 False 518.000000 518 85.352000 900 1400 1 chr7D.!!$F1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 334 0.314935 ATTGCGCTGTCCACCAAAAG 59.685 50.000 9.73 0.0 0.0 2.27 F
782 839 1.078143 GCCTCCGCTTCACTTCCAT 60.078 57.895 0.00 0.0 0.0 3.41 F
2316 2859 0.764890 TGTTGGTACTTGGCAGAGCT 59.235 50.000 0.00 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 2323 0.683412 TATCGCTGGCATGCTCAGAT 59.317 50.0 29.21 23.11 34.36 2.90 R
2655 3202 0.178990 GTGGTGGAAGGAAGCCAGTT 60.179 55.0 0.00 0.00 35.77 3.16 R
3712 6088 0.032416 AGGGTAGTAGGATGCACCGT 60.032 55.0 0.00 0.00 44.74 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.487532 CGAGGGTAGCGGTGGGTAG 61.488 68.421 0.00 0.00 0.00 3.18
58 59 3.782244 CTGCGCCAGTTGTCTCGC 61.782 66.667 4.18 0.00 46.78 5.03
61 62 2.607892 GCGCCAGTTGTCTCGCTTT 61.608 57.895 0.00 0.00 43.70 3.51
64 65 1.510480 GCCAGTTGTCTCGCTTTGCT 61.510 55.000 0.00 0.00 0.00 3.91
66 67 1.069636 CCAGTTGTCTCGCTTTGCTTC 60.070 52.381 0.00 0.00 0.00 3.86
67 68 1.599071 CAGTTGTCTCGCTTTGCTTCA 59.401 47.619 0.00 0.00 0.00 3.02
70 71 1.442769 TGTCTCGCTTTGCTTCATCC 58.557 50.000 0.00 0.00 0.00 3.51
71 72 0.729690 GTCTCGCTTTGCTTCATCCC 59.270 55.000 0.00 0.00 0.00 3.85
75 76 0.526954 CGCTTTGCTTCATCCCATGC 60.527 55.000 0.00 0.00 0.00 4.06
113 118 7.502226 TGTTTGTGAAGGAGTAATTCTGTTCAT 59.498 33.333 0.00 0.00 33.92 2.57
115 120 7.672983 TGTGAAGGAGTAATTCTGTTCATTC 57.327 36.000 0.00 0.00 33.92 2.67
118 123 9.606631 GTGAAGGAGTAATTCTGTTCATTCTAT 57.393 33.333 0.00 0.00 33.92 1.98
122 127 9.319143 AGGAGTAATTCTGTTCATTCTATTTCG 57.681 33.333 0.00 0.00 0.00 3.46
132 137 9.999009 CTGTTCATTCTATTTCGTAGTACTACA 57.001 33.333 28.03 15.12 35.87 2.74
165 182 7.670559 TCCTACTGGCTAGTCTAATAAAGGATC 59.329 40.741 5.78 0.00 38.36 3.36
166 183 7.451877 CCTACTGGCTAGTCTAATAAAGGATCA 59.548 40.741 5.78 0.00 38.36 2.92
168 185 8.268878 ACTGGCTAGTCTAATAAAGGATCAAT 57.731 34.615 0.00 0.00 28.79 2.57
169 186 8.153550 ACTGGCTAGTCTAATAAAGGATCAATG 58.846 37.037 0.00 0.00 28.79 2.82
211 242 5.620206 TCTAAACTTTTGAGATCTGGCACA 58.380 37.500 0.00 0.00 0.00 4.57
239 276 6.208797 ACCCCAGAAGAAACTTAAAATAGTGC 59.791 38.462 0.00 0.00 0.00 4.40
242 279 7.610305 CCCAGAAGAAACTTAAAATAGTGCCTA 59.390 37.037 0.00 0.00 0.00 3.93
243 280 9.178758 CCAGAAGAAACTTAAAATAGTGCCTAT 57.821 33.333 0.00 0.00 0.00 2.57
250 287 9.574516 AAACTTAAAATAGTGCCTATAGATGGG 57.425 33.333 0.00 0.00 0.00 4.00
291 334 0.314935 ATTGCGCTGTCCACCAAAAG 59.685 50.000 9.73 0.00 0.00 2.27
298 342 1.815003 CTGTCCACCAAAAGATGCTCC 59.185 52.381 0.00 0.00 0.00 4.70
303 347 2.764314 CCAAAAGATGCTCCGCGGG 61.764 63.158 27.83 17.41 0.00 6.13
324 377 1.427809 TGCATGGGTAGGAGATCAGG 58.572 55.000 0.00 0.00 0.00 3.86
389 442 4.160252 AGCAAGTTTTGTCTGTTGGATGTT 59.840 37.500 0.00 0.00 0.00 2.71
425 480 2.285488 GCTACTAGCGTTCCATTTCAGC 59.715 50.000 0.00 0.00 0.00 4.26
598 654 5.479306 TGCTAGTACAAAACTGATCTCCAC 58.521 41.667 0.00 0.00 39.39 4.02
624 680 5.488341 TGAAGAAGTGGCTACTCATTTACC 58.512 41.667 2.06 0.00 35.69 2.85
690 746 7.334921 GGTTGCTGTAGTAATTATGTTACCACA 59.665 37.037 0.00 4.81 37.31 4.17
691 747 8.723311 GTTGCTGTAGTAATTATGTTACCACAA 58.277 33.333 5.91 0.00 36.16 3.33
714 770 1.888215 CTCTTGCTGGCTTTGTCTCA 58.112 50.000 0.00 0.00 0.00 3.27
755 812 5.069383 TGCACAACTGGAACTAAGTGTAGTA 59.931 40.000 0.00 0.00 39.79 1.82
756 813 5.634020 GCACAACTGGAACTAAGTGTAGTAG 59.366 44.000 0.00 0.00 39.79 2.57
757 814 6.737899 GCACAACTGGAACTAAGTGTAGTAGT 60.738 42.308 0.00 0.00 39.79 2.73
770 827 3.004524 GTGTAGTAGTTCCTATGCCTCCG 59.995 52.174 0.00 0.00 0.00 4.63
782 839 1.078143 GCCTCCGCTTCACTTCCAT 60.078 57.895 0.00 0.00 0.00 3.41
790 847 2.938451 CGCTTCACTTCCATAGCATTGA 59.062 45.455 0.00 0.00 33.29 2.57
795 852 4.650734 TCACTTCCATAGCATTGACAACA 58.349 39.130 0.00 0.00 0.00 3.33
915 972 6.902341 TCTGTTGATTACTCTTTTGATGTGC 58.098 36.000 0.00 0.00 0.00 4.57
940 997 4.703379 TTTGGCAGTTGGGATTTTGAAT 57.297 36.364 0.00 0.00 0.00 2.57
957 1014 3.320626 TGAATCTCAGCTTCTTGACACG 58.679 45.455 0.00 0.00 0.00 4.49
981 1041 6.810676 CGCATCTGATCTAGCTATTTGTATGT 59.189 38.462 0.00 0.00 0.00 2.29
1062 1122 6.488006 CCATCTTTTCTTCTTTCTTGTCCTCA 59.512 38.462 0.00 0.00 0.00 3.86
1108 1173 6.687081 TTTTCTTGGGCCTAATGTATTACG 57.313 37.500 0.33 0.00 0.00 3.18
1214 1284 4.711846 TCATGTAAGAGTATGCTCCACTGT 59.288 41.667 7.25 0.00 42.59 3.55
1215 1285 5.891551 TCATGTAAGAGTATGCTCCACTGTA 59.108 40.000 7.25 0.00 42.59 2.74
1228 1299 6.530120 TGCTCCACTGTATTTCTTTACTGAA 58.470 36.000 0.00 0.00 0.00 3.02
1263 1334 1.673168 CAATAGGCTGAAGCTCCACC 58.327 55.000 0.00 0.00 41.70 4.61
1282 1354 4.485163 CACCTTAATTTACAGGCAAGCAC 58.515 43.478 0.00 0.00 32.79 4.40
1357 1429 7.232127 ACTTTCCATCAGCCTATGATTTTATGG 59.768 37.037 0.00 0.00 46.97 2.74
1439 1517 7.160049 TGGTTAGGAAATTATGTGTGACGTTA 58.840 34.615 0.00 0.00 0.00 3.18
1454 1532 8.440059 TGTGTGACGTTAGAATCATATGAAAAC 58.560 33.333 9.99 10.62 0.00 2.43
1455 1533 8.656849 GTGTGACGTTAGAATCATATGAAAACT 58.343 33.333 9.99 11.33 0.00 2.66
1459 1537 8.425577 ACGTTAGAATCATATGAAAACTGGAG 57.574 34.615 9.99 7.45 0.00 3.86
1474 1552 4.423625 ACTGGAGCTAACTTGTGAAAGT 57.576 40.909 0.00 0.00 33.76 2.66
1477 1555 5.066505 ACTGGAGCTAACTTGTGAAAGTTTG 59.933 40.000 8.97 8.42 42.48 2.93
1478 1556 4.947388 TGGAGCTAACTTGTGAAAGTTTGT 59.053 37.500 8.97 0.17 42.48 2.83
1480 1558 6.600032 TGGAGCTAACTTGTGAAAGTTTGTAA 59.400 34.615 8.97 0.00 42.48 2.41
1481 1559 7.284489 TGGAGCTAACTTGTGAAAGTTTGTAAT 59.716 33.333 8.97 0.00 42.48 1.89
1482 1560 8.780249 GGAGCTAACTTGTGAAAGTTTGTAATA 58.220 33.333 8.97 0.00 42.48 0.98
1484 1562 9.946165 AGCTAACTTGTGAAAGTTTGTAATAAC 57.054 29.630 8.97 0.00 42.48 1.89
1485 1563 9.724839 GCTAACTTGTGAAAGTTTGTAATAACA 57.275 29.630 8.97 0.00 42.48 2.41
1509 1587 8.853126 ACATATGGATACCTGTTCAAATCAATG 58.147 33.333 7.80 0.00 0.00 2.82
1510 1588 8.853126 CATATGGATACCTGTTCAAATCAATGT 58.147 33.333 0.00 0.00 0.00 2.71
1514 1592 3.981211 ACCTGTTCAAATCAATGTGTGC 58.019 40.909 0.00 0.00 0.00 4.57
1520 1598 4.325028 TCAAATCAATGTGTGCAAGCTT 57.675 36.364 0.00 0.00 0.00 3.74
1552 1630 5.421212 TTTCTTTCATGTTTGCAATTGGC 57.579 34.783 7.72 0.15 45.13 4.52
1553 1631 3.401182 TCTTTCATGTTTGCAATTGGCC 58.599 40.909 7.72 0.00 43.89 5.36
1558 1636 3.323115 TCATGTTTGCAATTGGCCTGTAA 59.677 39.130 3.32 0.00 43.89 2.41
1559 1637 4.020396 TCATGTTTGCAATTGGCCTGTAAT 60.020 37.500 3.32 0.00 43.89 1.89
1563 1641 1.477700 TGCAATTGGCCTGTAATCAGC 59.522 47.619 3.32 4.66 43.89 4.26
1568 1647 5.585390 CAATTGGCCTGTAATCAGCTTTAG 58.415 41.667 3.32 0.00 40.09 1.85
1576 1655 5.408604 CCTGTAATCAGCTTTAGTTTCGTGT 59.591 40.000 0.00 0.00 40.09 4.49
1589 1668 3.942748 AGTTTCGTGTAGGTCTTTTTGCA 59.057 39.130 0.00 0.00 0.00 4.08
1595 1674 3.756434 GTGTAGGTCTTTTTGCATGCCTA 59.244 43.478 16.68 3.52 0.00 3.93
1596 1675 4.009675 TGTAGGTCTTTTTGCATGCCTAG 58.990 43.478 16.68 7.15 30.29 3.02
1629 1708 8.510243 TGAAGTCATTTGCATGTGAACTATAT 57.490 30.769 3.41 0.00 0.00 0.86
1630 1709 9.612066 TGAAGTCATTTGCATGTGAACTATATA 57.388 29.630 3.41 0.00 0.00 0.86
1691 2232 8.962679 TGTTTTCACTGTTCAGTATAACCTTTT 58.037 29.630 5.11 0.00 0.00 2.27
1692 2233 9.797556 GTTTTCACTGTTCAGTATAACCTTTTT 57.202 29.630 5.11 0.00 0.00 1.94
1693 2234 9.796120 TTTTCACTGTTCAGTATAACCTTTTTG 57.204 29.630 5.11 0.00 0.00 2.44
1740 2281 9.674824 GAAAGATTAACATATCATGCCTTTGAG 57.325 33.333 0.00 0.00 0.00 3.02
1742 2283 8.985315 AGATTAACATATCATGCCTTTGAGAA 57.015 30.769 0.00 0.00 0.00 2.87
1747 2288 7.741027 ACATATCATGCCTTTGAGAAGTATG 57.259 36.000 0.00 0.00 31.79 2.39
1782 2323 4.224594 TCCATCCTTGCCAAAATTTATGCA 59.775 37.500 9.73 9.73 0.00 3.96
1800 2341 0.885150 CATCTGAGCATGCCAGCGAT 60.885 55.000 23.56 14.54 40.15 4.58
1803 2344 1.134431 TCTGAGCATGCCAGCGATAAA 60.134 47.619 23.56 9.12 40.15 1.40
1804 2345 1.878088 CTGAGCATGCCAGCGATAAAT 59.122 47.619 15.66 0.00 40.15 1.40
1805 2346 3.069289 CTGAGCATGCCAGCGATAAATA 58.931 45.455 15.66 0.00 40.15 1.40
1806 2347 3.678289 TGAGCATGCCAGCGATAAATAT 58.322 40.909 15.66 0.00 40.15 1.28
1807 2348 3.686241 TGAGCATGCCAGCGATAAATATC 59.314 43.478 15.66 0.57 40.15 1.63
1808 2349 3.937706 GAGCATGCCAGCGATAAATATCT 59.062 43.478 15.66 0.00 40.15 1.98
1809 2350 3.688185 AGCATGCCAGCGATAAATATCTG 59.312 43.478 15.66 0.00 40.15 2.90
1810 2351 3.730061 GCATGCCAGCGATAAATATCTGC 60.730 47.826 6.36 8.31 34.67 4.26
1811 2352 3.124578 TGCCAGCGATAAATATCTGCA 57.875 42.857 14.81 8.68 35.90 4.41
1812 2353 3.678289 TGCCAGCGATAAATATCTGCAT 58.322 40.909 14.81 0.00 35.90 3.96
1813 2354 3.437741 TGCCAGCGATAAATATCTGCATG 59.562 43.478 14.81 0.00 35.90 4.06
1814 2355 3.438087 GCCAGCGATAAATATCTGCATGT 59.562 43.478 14.81 0.00 35.90 3.21
1815 2356 4.083110 GCCAGCGATAAATATCTGCATGTT 60.083 41.667 14.81 0.00 35.90 2.71
1816 2357 5.563475 GCCAGCGATAAATATCTGCATGTTT 60.563 40.000 14.81 0.00 35.90 2.83
1817 2358 6.348458 GCCAGCGATAAATATCTGCATGTTTA 60.348 38.462 14.81 0.00 35.90 2.01
1818 2359 7.627088 GCCAGCGATAAATATCTGCATGTTTAT 60.627 37.037 14.81 2.71 38.40 1.40
1819 2360 8.882736 CCAGCGATAAATATCTGCATGTTTATA 58.117 33.333 14.81 0.00 36.77 0.98
1844 2385 8.807948 ATATGTGCCATTTAACTACTCTGTTT 57.192 30.769 0.00 0.00 0.00 2.83
1846 2387 5.178623 TGTGCCATTTAACTACTCTGTTTCG 59.821 40.000 0.00 0.00 0.00 3.46
1847 2388 5.178809 GTGCCATTTAACTACTCTGTTTCGT 59.821 40.000 0.00 0.00 0.00 3.85
1868 2409 9.667107 TTTCGTATTCAGATTCTTGATTACCTT 57.333 29.630 0.00 0.00 33.51 3.50
1874 2415 5.649395 TCAGATTCTTGATTACCTTGGCAAG 59.351 40.000 20.31 20.31 39.17 4.01
1925 2466 4.033358 GTGGAGCATTTGTCTTGTAGATCG 59.967 45.833 0.00 0.00 0.00 3.69
1940 2481 5.730550 TGTAGATCGAGGTAAGCATTTGTT 58.269 37.500 0.00 0.00 0.00 2.83
1979 2520 5.793026 TCACCTTTGTTTTGCACATTTTC 57.207 34.783 0.00 0.00 34.43 2.29
1987 2528 8.941127 TTTGTTTTGCACATTTTCTGTTTAAC 57.059 26.923 0.00 0.00 35.29 2.01
2119 2661 5.064579 TGTGTTACAATGAGTGTGTTCTGTG 59.935 40.000 0.00 0.00 41.89 3.66
2195 2738 2.007608 GACAACCCGCTATTGTCCTTC 58.992 52.381 11.51 0.00 46.77 3.46
2305 2848 5.469479 CATTTCCCTTGAACATGTTGGTAC 58.531 41.667 17.58 1.54 0.00 3.34
2316 2859 0.764890 TGTTGGTACTTGGCAGAGCT 59.235 50.000 0.00 0.00 0.00 4.09
2480 3024 4.021719 ACATGGAAAGTTTCAAGCAGATGG 60.022 41.667 17.16 1.75 0.00 3.51
2553 3097 7.710907 TCCATGAATTTTACTCTTGGTCGATAG 59.289 37.037 0.00 0.00 38.59 2.08
2602 3146 7.440523 AAGTTATGGAATGTCTGAGTGAAAC 57.559 36.000 0.00 0.00 0.00 2.78
2655 3202 7.161404 ACTGCTCAACTTACAATGATACTGAA 58.839 34.615 0.00 0.00 0.00 3.02
2660 3207 8.322906 TCAACTTACAATGATACTGAAACTGG 57.677 34.615 0.00 0.00 0.00 4.00
2661 3208 6.743575 ACTTACAATGATACTGAAACTGGC 57.256 37.500 0.00 0.00 0.00 4.85
2667 3214 4.640771 TGATACTGAAACTGGCTTCCTT 57.359 40.909 0.00 0.00 0.00 3.36
2675 3222 1.672356 CTGGCTTCCTTCCACCACG 60.672 63.158 0.00 0.00 0.00 4.94
2696 3243 7.338449 ACCACGTTTATATGCTTAACCTGAATT 59.662 33.333 0.00 0.00 0.00 2.17
2814 3361 6.369059 GCTTATTGCAGAAAAGATAGCAGA 57.631 37.500 8.47 0.00 42.31 4.26
2951 3498 2.025898 TGTACGGCGATCTTATCCACA 58.974 47.619 16.62 0.12 0.00 4.17
2958 3505 3.432326 GGCGATCTTATCCACAGAAACCT 60.432 47.826 0.00 0.00 0.00 3.50
2961 3508 5.178797 CGATCTTATCCACAGAAACCTTGT 58.821 41.667 0.00 0.00 0.00 3.16
2962 3509 5.063944 CGATCTTATCCACAGAAACCTTGTG 59.936 44.000 0.00 0.00 44.25 3.33
2978 3525 8.474006 AAACCTTGTGTGAATTGAACTTAAAC 57.526 30.769 0.00 0.00 0.00 2.01
2979 3526 7.164230 ACCTTGTGTGAATTGAACTTAAACA 57.836 32.000 0.00 0.00 0.00 2.83
2981 3528 7.093945 ACCTTGTGTGAATTGAACTTAAACACT 60.094 33.333 0.00 0.00 37.81 3.55
2982 3529 7.432252 CCTTGTGTGAATTGAACTTAAACACTC 59.568 37.037 0.00 0.00 37.81 3.51
3037 5380 2.093306 TTACTTGCAGATGGTCGGTG 57.907 50.000 0.00 0.00 0.00 4.94
3117 5460 4.243270 ACTAGGTATGTGCACGTCTTTTC 58.757 43.478 16.44 2.14 0.00 2.29
3154 5497 7.179338 ACACTGTATGAGGAGTTCTGAAACTAT 59.821 37.037 0.00 0.00 45.80 2.12
3277 5620 4.037327 CGACATGGACATATGACTGACTCT 59.963 45.833 10.38 0.00 0.00 3.24
3317 5660 0.751643 AACCAACCAGTGTGACCTGC 60.752 55.000 0.00 0.00 0.00 4.85
3329 5672 4.937620 AGTGTGACCTGCTTGTGTAATATG 59.062 41.667 0.00 0.00 0.00 1.78
3341 5684 5.195001 TGTGTAATATGCAGCTCGTATGA 57.805 39.130 0.00 0.00 0.00 2.15
3353 5696 0.448990 TCGTATGACGACAGTTCCCG 59.551 55.000 0.00 0.00 46.73 5.14
3403 5746 5.546499 TCCCTGTAGGAACTTTTAGTGTGAT 59.454 40.000 0.00 0.00 43.78 3.06
3423 5768 5.005682 GTGATTTTGTTTGTCTGTTTGGAGC 59.994 40.000 0.00 0.00 0.00 4.70
3495 5840 4.457257 AGATTTAGCTTCAGTCTGCCAAAC 59.543 41.667 0.00 0.00 0.00 2.93
3523 5868 1.824852 GGCATAGTTTGTCCCTTTGGG 59.175 52.381 0.00 0.00 46.11 4.12
3524 5869 2.525368 GCATAGTTTGTCCCTTTGGGT 58.475 47.619 2.25 0.00 44.74 4.51
3527 5872 1.119684 AGTTTGTCCCTTTGGGTTGC 58.880 50.000 2.25 0.00 44.74 4.17
3528 5873 1.119684 GTTTGTCCCTTTGGGTTGCT 58.880 50.000 2.25 0.00 44.74 3.91
3567 5912 3.181483 CCAGGAATATGGCTTCAGTTTGC 60.181 47.826 0.00 0.00 32.48 3.68
3634 5979 8.841300 TCTCTGTACTTATCTAGTTGCTATGTG 58.159 37.037 0.00 0.00 38.33 3.21
3635 5980 7.941919 TCTGTACTTATCTAGTTGCTATGTGG 58.058 38.462 0.00 0.00 38.33 4.17
3636 5981 7.560262 TCTGTACTTATCTAGTTGCTATGTGGT 59.440 37.037 0.00 0.00 38.33 4.16
3637 5982 7.489160 TGTACTTATCTAGTTGCTATGTGGTG 58.511 38.462 0.00 0.00 38.33 4.17
3638 5983 6.546428 ACTTATCTAGTTGCTATGTGGTGT 57.454 37.500 0.00 0.00 31.29 4.16
3639 5984 7.655521 ACTTATCTAGTTGCTATGTGGTGTA 57.344 36.000 0.00 0.00 31.29 2.90
3640 5985 8.251383 ACTTATCTAGTTGCTATGTGGTGTAT 57.749 34.615 0.00 0.00 31.29 2.29
3641 5986 8.361139 ACTTATCTAGTTGCTATGTGGTGTATC 58.639 37.037 0.00 0.00 31.29 2.24
3642 5987 6.985653 ATCTAGTTGCTATGTGGTGTATCT 57.014 37.500 0.00 0.00 0.00 1.98
3643 5988 6.149129 TCTAGTTGCTATGTGGTGTATCTG 57.851 41.667 0.00 0.00 0.00 2.90
3644 5989 4.826274 AGTTGCTATGTGGTGTATCTGT 57.174 40.909 0.00 0.00 0.00 3.41
3645 5990 4.507710 AGTTGCTATGTGGTGTATCTGTG 58.492 43.478 0.00 0.00 0.00 3.66
3646 5991 4.020218 AGTTGCTATGTGGTGTATCTGTGT 60.020 41.667 0.00 0.00 0.00 3.72
3647 5992 5.186992 AGTTGCTATGTGGTGTATCTGTGTA 59.813 40.000 0.00 0.00 0.00 2.90
3648 5993 5.869649 TGCTATGTGGTGTATCTGTGTAT 57.130 39.130 0.00 0.00 0.00 2.29
3649 5994 5.600696 TGCTATGTGGTGTATCTGTGTATG 58.399 41.667 0.00 0.00 0.00 2.39
3650 5995 4.449068 GCTATGTGGTGTATCTGTGTATGC 59.551 45.833 0.00 0.00 0.00 3.14
3651 5996 3.971245 TGTGGTGTATCTGTGTATGCA 57.029 42.857 0.00 0.00 0.00 3.96
3652 5997 4.278975 TGTGGTGTATCTGTGTATGCAA 57.721 40.909 0.00 0.00 0.00 4.08
3653 5998 4.842574 TGTGGTGTATCTGTGTATGCAAT 58.157 39.130 0.00 0.00 0.00 3.56
3654 5999 4.635324 TGTGGTGTATCTGTGTATGCAATG 59.365 41.667 0.00 0.00 0.00 2.82
3655 6000 3.627123 TGGTGTATCTGTGTATGCAATGC 59.373 43.478 0.00 0.00 0.00 3.56
3656 6001 3.003689 GGTGTATCTGTGTATGCAATGCC 59.996 47.826 1.53 0.00 0.00 4.40
3657 6002 3.003689 GTGTATCTGTGTATGCAATGCCC 59.996 47.826 1.53 0.00 0.00 5.36
3658 6003 2.742428 ATCTGTGTATGCAATGCCCT 57.258 45.000 1.53 0.00 0.00 5.19
3659 6004 1.753930 TCTGTGTATGCAATGCCCTG 58.246 50.000 1.53 0.00 0.00 4.45
3660 6005 1.281577 TCTGTGTATGCAATGCCCTGA 59.718 47.619 1.53 0.00 0.00 3.86
3661 6006 2.092267 TCTGTGTATGCAATGCCCTGAT 60.092 45.455 1.53 0.00 0.00 2.90
3662 6007 3.136260 TCTGTGTATGCAATGCCCTGATA 59.864 43.478 1.53 0.00 0.00 2.15
3663 6008 4.077108 CTGTGTATGCAATGCCCTGATAT 58.923 43.478 1.53 0.00 0.00 1.63
3664 6009 5.012975 TCTGTGTATGCAATGCCCTGATATA 59.987 40.000 1.53 0.00 0.00 0.86
3694 6070 2.286872 CATGCTCAGATCAACAGGGTC 58.713 52.381 0.00 0.00 0.00 4.46
3695 6071 1.649321 TGCTCAGATCAACAGGGTCT 58.351 50.000 0.00 0.00 0.00 3.85
3696 6072 1.552337 TGCTCAGATCAACAGGGTCTC 59.448 52.381 0.00 0.00 0.00 3.36
3701 6077 3.056536 TCAGATCAACAGGGTCTCGAAAG 60.057 47.826 0.00 0.00 0.00 2.62
3703 6079 1.712056 TCAACAGGGTCTCGAAAGGA 58.288 50.000 0.00 0.00 0.00 3.36
3704 6080 1.618837 TCAACAGGGTCTCGAAAGGAG 59.381 52.381 0.00 0.00 44.58 3.69
3720 6096 3.418684 AGGAGACTTTTTACGGTGCAT 57.581 42.857 0.00 0.00 37.44 3.96
3721 6097 3.335579 AGGAGACTTTTTACGGTGCATC 58.664 45.455 0.00 0.00 37.44 3.91
3722 6098 2.418976 GGAGACTTTTTACGGTGCATCC 59.581 50.000 0.00 0.00 0.00 3.51
3723 6099 3.335579 GAGACTTTTTACGGTGCATCCT 58.664 45.455 0.00 0.00 0.00 3.24
3725 6101 4.251268 AGACTTTTTACGGTGCATCCTAC 58.749 43.478 0.00 0.00 0.00 3.18
3726 6102 4.020485 AGACTTTTTACGGTGCATCCTACT 60.020 41.667 0.00 0.00 0.00 2.57
3741 6582 5.338463 GCATCCTACTACCCTTTGAAACTCT 60.338 44.000 0.00 0.00 0.00 3.24
3773 6617 8.776680 TTTCGTTTCTTGTTAGCAAAGTATTC 57.223 30.769 0.00 0.00 33.73 1.75
3780 6624 8.635765 TCTTGTTAGCAAAGTATTCCATTCTT 57.364 30.769 0.00 0.00 33.73 2.52
3822 6666 2.615912 GTCCTTGATGAGTTGCATAGCC 59.384 50.000 0.00 0.00 37.34 3.93
3842 6686 0.254178 ATTTCTCGGCTGTGCAGGAT 59.746 50.000 1.11 0.00 0.00 3.24
3853 6697 1.141657 TGTGCAGGATATCAAGGGAGC 59.858 52.381 4.83 0.00 0.00 4.70
3857 6701 2.053244 CAGGATATCAAGGGAGCCACT 58.947 52.381 4.83 0.00 0.00 4.00
3918 6762 1.609072 GGTGGAAAGACAAAGTGCCTC 59.391 52.381 0.00 0.00 0.00 4.70
4001 6845 1.518774 CAAGCCATGGGTGCCATTC 59.481 57.895 19.09 0.00 42.23 2.67
4039 6883 2.927477 GCCATGCATCTCAAACATGTTG 59.073 45.455 12.82 6.76 39.62 3.33
4040 6884 2.927477 CCATGCATCTCAAACATGTTGC 59.073 45.455 12.82 11.38 39.62 4.17
4047 6891 2.291465 TCTCAAACATGTTGCTGAGCAC 59.709 45.455 25.66 3.12 38.71 4.40
4056 6900 0.955428 TTGCTGAGCACCGGTTCATC 60.955 55.000 6.64 3.40 38.71 2.92
4057 6901 2.109126 GCTGAGCACCGGTTCATCC 61.109 63.158 2.97 0.00 33.56 3.51
4067 6911 0.807667 CGGTTCATCCTCTCCGCTTG 60.808 60.000 0.00 0.00 36.68 4.01
4072 6916 0.460987 CATCCTCTCCGCTTGACCAC 60.461 60.000 0.00 0.00 0.00 4.16
4074 6918 2.583441 CCTCTCCGCTTGACCACCA 61.583 63.158 0.00 0.00 0.00 4.17
4096 6940 5.066893 CCAGTTTGGTGGATGATATGAAGTG 59.933 44.000 0.00 0.00 40.44 3.16
4106 6950 7.228108 GTGGATGATATGAAGTGTTGACATGAT 59.772 37.037 0.00 0.00 0.00 2.45
4130 6974 5.780282 TGTTTCACTCCCAGAGATCTAAAGA 59.220 40.000 0.00 0.00 33.32 2.52
4133 6977 5.584913 TCACTCCCAGAGATCTAAAGAGTT 58.415 41.667 12.21 0.40 30.92 3.01
4155 6999 5.136816 TGCTACCAACGAGTACATGTAAA 57.863 39.130 7.25 0.00 0.00 2.01
4166 7010 8.773404 ACGAGTACATGTAAAGCTTTTATCTT 57.227 30.769 18.47 2.43 0.00 2.40
4167 7011 9.216117 ACGAGTACATGTAAAGCTTTTATCTTT 57.784 29.630 18.47 0.82 37.50 2.52
4173 7017 9.014297 ACATGTAAAGCTTTTATCTTTAGCAGT 57.986 29.630 18.47 2.15 36.88 4.40
4177 7021 9.474249 GTAAAGCTTTTATCTTTAGCAGTAACG 57.526 33.333 18.47 0.00 36.88 3.18
4178 7022 6.663944 AGCTTTTATCTTTAGCAGTAACGG 57.336 37.500 0.00 0.00 37.37 4.44
4179 7023 6.171213 AGCTTTTATCTTTAGCAGTAACGGT 58.829 36.000 0.00 0.00 37.37 4.83
4180 7024 6.092259 AGCTTTTATCTTTAGCAGTAACGGTG 59.908 38.462 0.00 0.00 37.37 4.94
4181 7025 6.091713 GCTTTTATCTTTAGCAGTAACGGTGA 59.908 38.462 0.00 0.00 35.05 4.02
4182 7026 6.956299 TTTATCTTTAGCAGTAACGGTGAC 57.044 37.500 0.00 0.00 0.00 3.67
4183 7027 4.803098 ATCTTTAGCAGTAACGGTGACT 57.197 40.909 0.00 0.00 0.00 3.41
4184 7028 3.909430 TCTTTAGCAGTAACGGTGACTG 58.091 45.455 19.50 19.50 45.90 3.51
4189 7033 1.795768 CAGTAACGGTGACTGCATGT 58.204 50.000 12.58 0.00 38.06 3.21
4190 7034 1.460743 CAGTAACGGTGACTGCATGTG 59.539 52.381 12.58 0.00 38.06 3.21
4191 7035 0.796312 GTAACGGTGACTGCATGTGG 59.204 55.000 0.00 0.00 0.00 4.17
4192 7036 0.394938 TAACGGTGACTGCATGTGGT 59.605 50.000 0.00 0.00 0.00 4.16
4193 7037 0.884704 AACGGTGACTGCATGTGGTC 60.885 55.000 11.46 11.46 0.00 4.02
4194 7038 2.034879 CGGTGACTGCATGTGGTCC 61.035 63.158 14.38 8.13 0.00 4.46
4195 7039 1.073025 GGTGACTGCATGTGGTCCA 59.927 57.895 14.38 0.00 0.00 4.02
4196 7040 0.537143 GGTGACTGCATGTGGTCCAA 60.537 55.000 14.38 0.00 0.00 3.53
4197 7041 0.877071 GTGACTGCATGTGGTCCAAG 59.123 55.000 14.38 0.00 0.00 3.61
4198 7042 0.250858 TGACTGCATGTGGTCCAAGG 60.251 55.000 14.38 0.00 0.00 3.61
4199 7043 0.036732 GACTGCATGTGGTCCAAGGA 59.963 55.000 0.00 0.00 0.00 3.36
4200 7044 0.037303 ACTGCATGTGGTCCAAGGAG 59.963 55.000 0.00 0.00 36.43 3.69
4201 7045 0.037303 CTGCATGTGGTCCAAGGAGT 59.963 55.000 0.00 0.00 0.00 3.85
4202 7046 0.478072 TGCATGTGGTCCAAGGAGTT 59.522 50.000 0.00 0.00 0.00 3.01
4203 7047 1.133513 TGCATGTGGTCCAAGGAGTTT 60.134 47.619 0.00 0.00 0.00 2.66
4204 7048 1.270550 GCATGTGGTCCAAGGAGTTTG 59.729 52.381 0.00 0.00 36.50 2.93
4205 7049 2.862541 CATGTGGTCCAAGGAGTTTGA 58.137 47.619 0.00 0.00 39.21 2.69
4206 7050 2.341846 TGTGGTCCAAGGAGTTTGAC 57.658 50.000 0.00 0.00 39.21 3.18
4207 7051 1.226746 GTGGTCCAAGGAGTTTGACG 58.773 55.000 0.00 0.00 39.21 4.35
4208 7052 1.124780 TGGTCCAAGGAGTTTGACGA 58.875 50.000 0.00 0.00 39.21 4.20
4209 7053 1.697432 TGGTCCAAGGAGTTTGACGAT 59.303 47.619 0.00 0.00 39.21 3.73
4210 7054 2.901192 TGGTCCAAGGAGTTTGACGATA 59.099 45.455 0.00 0.00 39.21 2.92
4211 7055 3.517901 TGGTCCAAGGAGTTTGACGATAT 59.482 43.478 0.00 0.00 39.21 1.63
4212 7056 4.019681 TGGTCCAAGGAGTTTGACGATATT 60.020 41.667 0.00 0.00 39.21 1.28
4213 7057 5.188163 TGGTCCAAGGAGTTTGACGATATTA 59.812 40.000 0.00 0.00 39.21 0.98
4214 7058 6.126883 TGGTCCAAGGAGTTTGACGATATTAT 60.127 38.462 0.00 0.00 39.21 1.28
4215 7059 6.424207 GGTCCAAGGAGTTTGACGATATTATC 59.576 42.308 0.00 0.00 39.21 1.75
4216 7060 7.210873 GTCCAAGGAGTTTGACGATATTATCT 58.789 38.462 2.36 0.00 39.21 1.98
4217 7061 7.169982 GTCCAAGGAGTTTGACGATATTATCTG 59.830 40.741 2.36 0.00 39.21 2.90
4218 7062 7.069455 TCCAAGGAGTTTGACGATATTATCTGA 59.931 37.037 2.36 0.00 39.21 3.27
4219 7063 7.383572 CCAAGGAGTTTGACGATATTATCTGAG 59.616 40.741 2.36 0.00 39.21 3.35
4220 7064 7.825331 AGGAGTTTGACGATATTATCTGAGA 57.175 36.000 2.36 0.00 0.00 3.27
4221 7065 8.239038 AGGAGTTTGACGATATTATCTGAGAA 57.761 34.615 2.36 0.00 0.00 2.87
4222 7066 8.696374 AGGAGTTTGACGATATTATCTGAGAAA 58.304 33.333 2.36 0.00 0.00 2.52
4223 7067 9.314321 GGAGTTTGACGATATTATCTGAGAAAA 57.686 33.333 2.36 0.00 0.00 2.29
4225 7069 9.877178 AGTTTGACGATATTATCTGAGAAAACT 57.123 29.630 2.36 7.61 0.00 2.66
4230 7074 9.337091 GACGATATTATCTGAGAAAACTCTAGC 57.663 37.037 2.36 0.00 0.00 3.42
4231 7075 8.851145 ACGATATTATCTGAGAAAACTCTAGCA 58.149 33.333 2.36 0.00 0.00 3.49
4232 7076 9.684448 CGATATTATCTGAGAAAACTCTAGCAA 57.316 33.333 2.36 0.00 0.00 3.91
4240 7084 8.950210 TCTGAGAAAACTCTAGCAATAATTTGG 58.050 33.333 0.00 0.00 33.22 3.28
4241 7085 8.862325 TGAGAAAACTCTAGCAATAATTTGGA 57.138 30.769 0.00 0.00 33.22 3.53
4242 7086 8.730680 TGAGAAAACTCTAGCAATAATTTGGAC 58.269 33.333 0.00 0.00 33.22 4.02
4243 7087 8.635765 AGAAAACTCTAGCAATAATTTGGACA 57.364 30.769 0.00 0.00 33.22 4.02
4244 7088 8.734386 AGAAAACTCTAGCAATAATTTGGACAG 58.266 33.333 0.00 0.00 33.22 3.51
4245 7089 8.409358 AAAACTCTAGCAATAATTTGGACAGT 57.591 30.769 0.00 0.00 33.22 3.55
4246 7090 6.992063 ACTCTAGCAATAATTTGGACAGTG 57.008 37.500 0.00 0.00 33.22 3.66
4247 7091 6.711277 ACTCTAGCAATAATTTGGACAGTGA 58.289 36.000 0.00 0.00 33.22 3.41
4248 7092 6.595716 ACTCTAGCAATAATTTGGACAGTGAC 59.404 38.462 0.00 0.00 33.22 3.67
4249 7093 5.880332 TCTAGCAATAATTTGGACAGTGACC 59.120 40.000 4.52 4.52 33.22 4.02
4250 7094 3.440173 AGCAATAATTTGGACAGTGACCG 59.560 43.478 7.14 0.00 33.22 4.79
4251 7095 3.438781 GCAATAATTTGGACAGTGACCGA 59.561 43.478 7.14 2.10 33.22 4.69
4252 7096 4.437390 GCAATAATTTGGACAGTGACCGAG 60.437 45.833 7.14 0.00 33.22 4.63
4253 7097 2.930826 AATTTGGACAGTGACCGAGT 57.069 45.000 7.14 0.00 0.00 4.18
4254 7098 5.670792 ATAATTTGGACAGTGACCGAGTA 57.329 39.130 7.14 2.88 0.00 2.59
4255 7099 2.806608 TTTGGACAGTGACCGAGTAC 57.193 50.000 7.14 0.00 0.00 2.73
4256 7100 1.991121 TTGGACAGTGACCGAGTACT 58.009 50.000 7.14 0.00 0.00 2.73
4257 7101 1.991121 TGGACAGTGACCGAGTACTT 58.009 50.000 7.14 0.00 0.00 2.24
4258 7102 2.313317 TGGACAGTGACCGAGTACTTT 58.687 47.619 7.14 0.00 0.00 2.66
4259 7103 3.489355 TGGACAGTGACCGAGTACTTTA 58.511 45.455 7.14 0.00 0.00 1.85
4260 7104 3.254166 TGGACAGTGACCGAGTACTTTAC 59.746 47.826 7.14 0.00 0.00 2.01
4261 7105 3.366781 GGACAGTGACCGAGTACTTTACC 60.367 52.174 0.00 0.00 0.00 2.85
4262 7106 2.227388 ACAGTGACCGAGTACTTTACCG 59.773 50.000 0.00 0.00 0.00 4.02
4263 7107 2.485426 CAGTGACCGAGTACTTTACCGA 59.515 50.000 0.00 0.00 0.00 4.69
4264 7108 2.485814 AGTGACCGAGTACTTTACCGAC 59.514 50.000 0.00 0.00 0.00 4.79
4265 7109 2.226437 GTGACCGAGTACTTTACCGACA 59.774 50.000 0.00 0.00 0.00 4.35
4266 7110 2.884012 TGACCGAGTACTTTACCGACAA 59.116 45.455 0.00 0.00 0.00 3.18
4267 7111 3.058016 TGACCGAGTACTTTACCGACAAG 60.058 47.826 0.00 0.00 0.00 3.16
4268 7112 3.149196 ACCGAGTACTTTACCGACAAGA 58.851 45.455 0.00 0.00 0.00 3.02
4269 7113 3.569701 ACCGAGTACTTTACCGACAAGAA 59.430 43.478 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.796231 CTCGTCGCCGGACAAGGG 62.796 72.222 5.05 0.00 43.61 3.95
5 6 4.796231 CCCTCGTCGCCGGACAAG 62.796 72.222 5.05 0.00 43.61 3.16
7 8 4.720902 TACCCTCGTCGCCGGACA 62.721 66.667 5.05 0.00 43.61 4.02
8 9 3.885521 CTACCCTCGTCGCCGGAC 61.886 72.222 5.05 0.00 39.89 4.79
13 14 4.849329 CACCGCTACCCTCGTCGC 62.849 72.222 0.00 0.00 0.00 5.19
14 15 4.189188 CCACCGCTACCCTCGTCG 62.189 72.222 0.00 0.00 0.00 5.12
15 16 3.834799 CCCACCGCTACCCTCGTC 61.835 72.222 0.00 0.00 0.00 4.20
16 17 3.286694 TACCCACCGCTACCCTCGT 62.287 63.158 0.00 0.00 0.00 4.18
17 18 2.440796 TACCCACCGCTACCCTCG 60.441 66.667 0.00 0.00 0.00 4.63
18 19 2.794028 GCTACCCACCGCTACCCTC 61.794 68.421 0.00 0.00 0.00 4.30
46 47 0.947244 AAGCAAAGCGAGACAACTGG 59.053 50.000 0.00 0.00 0.00 4.00
58 59 3.604875 AAAGCATGGGATGAAGCAAAG 57.395 42.857 0.00 0.00 0.00 2.77
61 62 2.250031 ACAAAAGCATGGGATGAAGCA 58.750 42.857 0.00 0.00 0.00 3.91
64 65 4.686191 ACAAACAAAAGCATGGGATGAA 57.314 36.364 0.00 0.00 0.00 2.57
66 67 4.575645 ACAAACAAACAAAAGCATGGGATG 59.424 37.500 0.00 0.00 0.00 3.51
67 68 4.779696 ACAAACAAACAAAAGCATGGGAT 58.220 34.783 0.00 0.00 0.00 3.85
70 71 5.568296 CACAAACAAACAAACAAAAGCATGG 59.432 36.000 0.00 0.00 0.00 3.66
71 72 6.369005 TCACAAACAAACAAACAAAAGCATG 58.631 32.000 0.00 0.00 0.00 4.06
75 76 7.042119 ACTCCTTCACAAACAAACAAACAAAAG 60.042 33.333 0.00 0.00 0.00 2.27
121 126 9.096160 CCAGTAGGATACATATGTAGTACTACG 57.904 40.741 27.31 23.80 46.26 3.51
122 127 8.891720 GCCAGTAGGATACATATGTAGTACTAC 58.108 40.741 26.99 26.99 46.26 2.73
126 131 8.833734 ACTAGCCAGTAGGATACATATGTAGTA 58.166 37.037 19.80 9.34 46.26 1.82
127 132 7.700846 ACTAGCCAGTAGGATACATATGTAGT 58.299 38.462 19.80 10.21 46.26 2.73
128 133 8.050325 AGACTAGCCAGTAGGATACATATGTAG 58.950 40.741 19.80 6.77 46.26 2.74
129 134 7.929959 AGACTAGCCAGTAGGATACATATGTA 58.070 38.462 17.65 17.65 46.26 2.29
130 135 6.795590 AGACTAGCCAGTAGGATACATATGT 58.204 40.000 13.93 13.93 46.26 2.29
131 136 8.809468 TTAGACTAGCCAGTAGGATACATATG 57.191 38.462 0.00 0.00 46.26 1.78
134 139 9.824216 TTTATTAGACTAGCCAGTAGGATACAT 57.176 33.333 0.00 0.00 46.26 2.29
183 214 8.267183 TGCCAGATCTCAAAAGTTTAGATGATA 58.733 33.333 5.75 0.00 30.19 2.15
190 221 5.376625 AGTGTGCCAGATCTCAAAAGTTTA 58.623 37.500 0.00 0.00 0.00 2.01
211 242 8.666821 ACTATTTTAAGTTTCTTCTGGGGTAGT 58.333 33.333 0.00 0.00 0.00 2.73
239 276 1.983224 CGGCCCACCCATCTATAGG 59.017 63.158 0.00 0.00 0.00 2.57
242 279 2.129555 GATGCGGCCCACCCATCTAT 62.130 60.000 0.00 0.00 39.07 1.98
243 280 2.772191 ATGCGGCCCACCCATCTA 60.772 61.111 0.00 0.00 0.00 1.98
244 281 4.195334 GATGCGGCCCACCCATCT 62.195 66.667 0.00 0.00 39.07 2.90
250 287 1.887344 AAATGTTGGATGCGGCCCAC 61.887 55.000 0.00 0.00 32.58 4.61
298 342 2.666190 CTACCCATGCATCCCGCG 60.666 66.667 0.00 0.00 46.97 6.46
303 347 2.027377 CCTGATCTCCTACCCATGCATC 60.027 54.545 0.00 0.00 0.00 3.91
334 387 1.804372 GCTAGTGACGAGAATGCCAGG 60.804 57.143 0.00 0.00 0.00 4.45
346 399 0.393537 AGCATGCCTTGGCTAGTGAC 60.394 55.000 15.66 6.08 38.90 3.67
414 469 1.619654 CACACTGGGCTGAAATGGAA 58.380 50.000 0.00 0.00 0.00 3.53
425 480 4.293648 TCGACGGTGCACACTGGG 62.294 66.667 20.43 3.48 41.89 4.45
573 629 5.932303 TGGAGATCAGTTTTGTACTAGCAAC 59.068 40.000 0.00 0.00 34.56 4.17
598 654 6.506500 AAATGAGTAGCCACTTCTTCAATG 57.493 37.500 0.00 0.00 34.21 2.82
624 680 3.382227 TGCAGGCATCAATATCCAACTTG 59.618 43.478 0.00 0.00 0.00 3.16
690 746 1.690352 ACAAAGCCAGCAAGAGCAATT 59.310 42.857 0.00 0.00 45.49 2.32
691 747 1.271656 GACAAAGCCAGCAAGAGCAAT 59.728 47.619 0.00 0.00 45.49 3.56
714 770 1.747325 GCATGTGGCACCAGGTGTTT 61.747 55.000 21.26 0.00 43.97 2.83
755 812 0.466124 GAAGCGGAGGCATAGGAACT 59.534 55.000 0.00 0.00 43.41 3.01
756 813 0.178068 TGAAGCGGAGGCATAGGAAC 59.822 55.000 0.00 0.00 43.41 3.62
757 814 0.178068 GTGAAGCGGAGGCATAGGAA 59.822 55.000 0.00 0.00 43.41 3.36
759 816 0.179000 AAGTGAAGCGGAGGCATAGG 59.821 55.000 0.00 0.00 43.41 2.57
760 817 1.576356 GAAGTGAAGCGGAGGCATAG 58.424 55.000 0.00 0.00 43.41 2.23
761 818 0.178068 GGAAGTGAAGCGGAGGCATA 59.822 55.000 0.00 0.00 43.41 3.14
762 819 1.078143 GGAAGTGAAGCGGAGGCAT 60.078 57.895 0.00 0.00 43.41 4.40
763 820 1.841302 ATGGAAGTGAAGCGGAGGCA 61.841 55.000 0.00 0.00 43.41 4.75
770 827 3.691118 TGTCAATGCTATGGAAGTGAAGC 59.309 43.478 0.00 0.00 35.51 3.86
915 972 3.967332 AAATCCCAACTGCCAAATCAG 57.033 42.857 0.00 0.00 39.86 2.90
940 997 0.389025 TGCGTGTCAAGAAGCTGAGA 59.611 50.000 0.00 0.00 0.00 3.27
957 1014 7.601886 ACACATACAAATAGCTAGATCAGATGC 59.398 37.037 0.00 0.00 0.00 3.91
981 1041 4.376146 TCATGTCGAATGTCTTGTGAACA 58.624 39.130 0.00 0.00 0.00 3.18
1062 1122 2.439507 CCCATGTTACCAGGAGCACTAT 59.560 50.000 0.00 0.00 0.00 2.12
1108 1173 8.491950 ACACATTTACACTGAAAACAAACAAAC 58.508 29.630 0.00 0.00 0.00 2.93
1263 1334 3.171277 GCGTGCTTGCCTGTAAATTAAG 58.829 45.455 0.00 0.00 0.00 1.85
1282 1354 1.927210 CCGACGATCATTTCCTGCG 59.073 57.895 0.00 0.00 0.00 5.18
1357 1429 2.153817 GCGCTAAAAGAAAAGCAGTTGC 59.846 45.455 0.00 0.00 38.70 4.17
1392 1470 2.624316 CACAGTAGTGCAAATGCCTG 57.376 50.000 2.46 5.50 39.21 4.85
1439 1517 8.270744 AGTTAGCTCCAGTTTTCATATGATTCT 58.729 33.333 6.17 2.92 0.00 2.40
1449 1527 5.751243 TTCACAAGTTAGCTCCAGTTTTC 57.249 39.130 0.00 0.00 0.00 2.29
1481 1559 9.913310 TTGATTTGAACAGGTATCCATATGTTA 57.087 29.630 1.24 0.00 36.08 2.41
1482 1560 8.821686 TTGATTTGAACAGGTATCCATATGTT 57.178 30.769 1.24 0.00 38.53 2.71
1484 1562 8.853126 ACATTGATTTGAACAGGTATCCATATG 58.147 33.333 0.00 0.00 0.00 1.78
1485 1563 8.853126 CACATTGATTTGAACAGGTATCCATAT 58.147 33.333 0.00 0.00 0.00 1.78
1486 1564 7.833682 ACACATTGATTTGAACAGGTATCCATA 59.166 33.333 0.00 0.00 0.00 2.74
1487 1565 6.664816 ACACATTGATTTGAACAGGTATCCAT 59.335 34.615 0.00 0.00 0.00 3.41
1488 1566 6.009589 ACACATTGATTTGAACAGGTATCCA 58.990 36.000 0.00 0.00 0.00 3.41
1489 1567 6.324819 CACACATTGATTTGAACAGGTATCC 58.675 40.000 0.00 0.00 0.00 2.59
1490 1568 5.801947 GCACACATTGATTTGAACAGGTATC 59.198 40.000 0.00 0.00 0.00 2.24
1491 1569 5.243507 TGCACACATTGATTTGAACAGGTAT 59.756 36.000 0.00 0.00 0.00 2.73
1509 1587 8.693542 AGAAATATCAAAATAAGCTTGCACAC 57.306 30.769 9.86 0.00 0.00 3.82
1510 1588 9.709495 AAAGAAATATCAAAATAAGCTTGCACA 57.291 25.926 9.86 0.00 0.00 4.57
1545 1623 4.460948 AAAGCTGATTACAGGCCAATTG 57.539 40.909 5.01 0.00 43.62 2.32
1547 1625 4.860022 ACTAAAGCTGATTACAGGCCAAT 58.140 39.130 5.01 0.00 43.62 3.16
1552 1630 5.408604 ACACGAAACTAAAGCTGATTACAGG 59.591 40.000 0.00 0.00 43.62 4.00
1553 1631 6.467723 ACACGAAACTAAAGCTGATTACAG 57.532 37.500 0.00 0.00 45.91 2.74
1558 1636 5.047235 AGACCTACACGAAACTAAAGCTGAT 60.047 40.000 0.00 0.00 0.00 2.90
1559 1637 4.280174 AGACCTACACGAAACTAAAGCTGA 59.720 41.667 0.00 0.00 0.00 4.26
1563 1641 6.631636 GCAAAAAGACCTACACGAAACTAAAG 59.368 38.462 0.00 0.00 0.00 1.85
1568 1647 4.281525 TGCAAAAAGACCTACACGAAAC 57.718 40.909 0.00 0.00 0.00 2.78
1576 1655 3.016736 GCTAGGCATGCAAAAAGACCTA 58.983 45.455 21.36 7.87 0.00 3.08
1589 1668 5.628130 ATGACTTCATAACATGCTAGGCAT 58.372 37.500 0.00 0.00 41.62 4.40
1595 1674 5.648178 TGCAAATGACTTCATAACATGCT 57.352 34.783 14.81 0.00 35.10 3.79
1596 1675 5.808540 ACATGCAAATGACTTCATAACATGC 59.191 36.000 19.22 14.91 40.65 4.06
1673 2214 5.336451 GGGGCAAAAAGGTTATACTGAACAG 60.336 44.000 0.00 0.00 0.00 3.16
1679 2220 4.941713 TCATGGGGCAAAAAGGTTATACT 58.058 39.130 0.00 0.00 0.00 2.12
1684 2225 0.686789 GCTCATGGGGCAAAAAGGTT 59.313 50.000 0.00 0.00 0.00 3.50
1691 2232 3.117398 AGAATAAGATGCTCATGGGGCAA 60.117 43.478 15.76 3.18 43.14 4.52
1692 2233 2.444388 AGAATAAGATGCTCATGGGGCA 59.556 45.455 14.55 14.55 44.05 5.36
1693 2234 2.818432 CAGAATAAGATGCTCATGGGGC 59.182 50.000 0.00 0.00 0.00 5.80
1723 2264 7.512130 TCATACTTCTCAAAGGCATGATATGT 58.488 34.615 0.00 6.85 35.15 2.29
1740 2281 7.035612 GGATGGAAAACCAAACATCATACTTC 58.964 38.462 0.00 0.00 41.03 3.01
1742 2283 6.256053 AGGATGGAAAACCAAACATCATACT 58.744 36.000 0.00 0.00 41.03 2.12
1747 2288 3.996363 GCAAGGATGGAAAACCAAACATC 59.004 43.478 0.00 0.00 39.11 3.06
1768 2309 4.435425 TGCTCAGATGCATAAATTTTGGC 58.565 39.130 0.00 1.20 38.12 4.52
1782 2323 0.683412 TATCGCTGGCATGCTCAGAT 59.317 50.000 29.21 23.11 34.36 2.90
1823 2364 5.178809 ACGAAACAGAGTAGTTAAATGGCAC 59.821 40.000 0.00 0.00 0.00 5.01
1844 2385 7.710907 CCAAGGTAATCAAGAATCTGAATACGA 59.289 37.037 0.00 0.00 34.02 3.43
1846 2387 7.283127 TGCCAAGGTAATCAAGAATCTGAATAC 59.717 37.037 0.00 0.00 32.94 1.89
1847 2388 7.345691 TGCCAAGGTAATCAAGAATCTGAATA 58.654 34.615 0.00 0.00 0.00 1.75
1868 2409 4.141846 GGATCACTATCAGAAGACTTGCCA 60.142 45.833 0.00 0.00 33.41 4.92
1874 2415 5.596361 TGAAGGAGGATCACTATCAGAAGAC 59.404 44.000 0.00 0.00 36.25 3.01
1925 2466 7.377766 TCACTATCAAACAAATGCTTACCTC 57.622 36.000 0.00 0.00 0.00 3.85
1940 2481 4.624913 AGGTGAAGGAGGATCACTATCAA 58.375 43.478 6.62 0.00 45.13 2.57
1979 2520 7.923414 AAAAGGTATCAGGCTAGTTAAACAG 57.077 36.000 0.00 0.00 0.00 3.16
2007 2548 5.461032 TCCGGCTGAAATAAACACAAAAT 57.539 34.783 0.00 0.00 0.00 1.82
2008 2549 4.920640 TCCGGCTGAAATAAACACAAAA 57.079 36.364 0.00 0.00 0.00 2.44
2009 2550 4.920640 TTCCGGCTGAAATAAACACAAA 57.079 36.364 0.00 0.00 0.00 2.83
2021 2562 2.459060 TATCAACGTTTTCCGGCTGA 57.541 45.000 0.00 0.00 42.24 4.26
2104 2646 4.262207 CCAGACTACACAGAACACACTCAT 60.262 45.833 0.00 0.00 0.00 2.90
2105 2647 3.068165 CCAGACTACACAGAACACACTCA 59.932 47.826 0.00 0.00 0.00 3.41
2119 2661 4.284746 CCATTATCCTTCCTCCCAGACTAC 59.715 50.000 0.00 0.00 0.00 2.73
2195 2738 2.683475 CCCCTTAGGCTGGTTGGG 59.317 66.667 0.00 3.06 37.68 4.12
2305 2848 2.079925 GAAAGGTACAGCTCTGCCAAG 58.920 52.381 0.00 0.00 0.00 3.61
2480 3024 4.579753 AGCCTCCGATAAGTAGTTGTCTAC 59.420 45.833 5.62 0.00 44.79 2.59
2615 3161 6.318648 AGTTGAGCAGTTGAGTGAAAACATAA 59.681 34.615 0.00 0.00 0.00 1.90
2655 3202 0.178990 GTGGTGGAAGGAAGCCAGTT 60.179 55.000 0.00 0.00 35.77 3.16
2660 3207 1.886886 TAAACGTGGTGGAAGGAAGC 58.113 50.000 0.00 0.00 0.00 3.86
2661 3208 4.035208 GCATATAAACGTGGTGGAAGGAAG 59.965 45.833 0.00 0.00 0.00 3.46
2667 3214 4.877251 GGTTAAGCATATAAACGTGGTGGA 59.123 41.667 0.00 0.00 0.00 4.02
2675 3222 8.903820 AGTCCAATTCAGGTTAAGCATATAAAC 58.096 33.333 7.52 0.00 0.00 2.01
2696 3243 2.237143 CCCAGAGCTGAACAATAGTCCA 59.763 50.000 0.00 0.00 0.00 4.02
2740 3287 5.717178 AGCTTTAGTCATACTGTCCAGAAGA 59.283 40.000 0.40 0.00 0.00 2.87
2796 3343 4.019860 AGGACTCTGCTATCTTTTCTGCAA 60.020 41.667 0.00 0.00 34.90 4.08
2798 3345 4.135747 AGGACTCTGCTATCTTTTCTGC 57.864 45.455 0.00 0.00 0.00 4.26
2807 3354 8.638629 AAACGTAGAATATAGGACTCTGCTAT 57.361 34.615 0.00 0.00 35.19 2.97
2808 3355 8.997323 GTAAACGTAGAATATAGGACTCTGCTA 58.003 37.037 0.00 0.00 0.00 3.49
2813 3360 9.962783 AATGTGTAAACGTAGAATATAGGACTC 57.037 33.333 0.00 0.00 0.00 3.36
2951 3498 6.530019 AAGTTCAATTCACACAAGGTTTCT 57.470 33.333 0.00 0.00 0.00 2.52
2958 3505 7.821652 TGAGTGTTTAAGTTCAATTCACACAA 58.178 30.769 0.00 0.00 36.36 3.33
2961 3508 7.857734 TCTGAGTGTTTAAGTTCAATTCACA 57.142 32.000 0.00 0.00 0.00 3.58
2962 3509 7.857885 CCTTCTGAGTGTTTAAGTTCAATTCAC 59.142 37.037 0.00 0.00 0.00 3.18
2978 3525 4.809958 CACATTAGAGCATCCTTCTGAGTG 59.190 45.833 0.00 0.00 33.66 3.51
2979 3526 4.469227 ACACATTAGAGCATCCTTCTGAGT 59.531 41.667 0.00 0.00 33.66 3.41
2981 3528 6.544928 TTACACATTAGAGCATCCTTCTGA 57.455 37.500 0.00 0.00 33.66 3.27
2982 3529 7.255035 CCATTTACACATTAGAGCATCCTTCTG 60.255 40.741 0.00 0.00 33.66 3.02
3020 3569 0.396435 TTCACCGACCATCTGCAAGT 59.604 50.000 0.00 0.00 33.76 3.16
3037 5380 5.996669 TCCGGTTGTAGAAGAAAAAGTTC 57.003 39.130 0.00 0.00 0.00 3.01
3117 5460 5.422331 TCCTCATACAGTGTTCTTCCTAAGG 59.578 44.000 0.00 0.00 0.00 2.69
3317 5660 5.691754 TCATACGAGCTGCATATTACACAAG 59.308 40.000 1.02 0.00 0.00 3.16
3341 5684 1.075482 TCCTACCGGGAACTGTCGT 59.925 57.895 6.32 0.00 41.91 4.34
3353 5696 2.544486 CCGCCATACGTAGTTTCCTACC 60.544 54.545 0.08 0.00 37.78 3.18
3403 5746 3.506810 CGCTCCAAACAGACAAACAAAA 58.493 40.909 0.00 0.00 0.00 2.44
3423 5768 1.453155 AGAGGCCAAAAGTGTATGCG 58.547 50.000 5.01 0.00 0.00 4.73
3479 5824 1.949525 TCAAGTTTGGCAGACTGAAGC 59.050 47.619 11.84 0.00 0.00 3.86
3523 5868 2.758736 ACATGTCTCCAGAGAGCAAC 57.241 50.000 0.00 0.00 40.22 4.17
3524 5869 3.557898 GGAAACATGTCTCCAGAGAGCAA 60.558 47.826 13.59 0.00 40.22 3.91
3527 5872 3.969287 TGGAAACATGTCTCCAGAGAG 57.031 47.619 17.20 0.00 36.79 3.20
3553 5898 2.283145 AGACTGCAAACTGAAGCCAT 57.717 45.000 0.00 0.00 0.00 4.40
3567 5912 8.627403 AGAATCCAATTTACATGCATAAGACTG 58.373 33.333 0.00 0.00 0.00 3.51
3584 5929 8.599792 AGAATGGTTCAAATTCAAGAATCCAAT 58.400 29.630 4.81 0.00 36.65 3.16
3634 5979 3.003689 GGCATTGCATACACAGATACACC 59.996 47.826 11.39 0.00 0.00 4.16
3635 5980 3.003689 GGGCATTGCATACACAGATACAC 59.996 47.826 11.39 0.00 0.00 2.90
3636 5981 3.117926 AGGGCATTGCATACACAGATACA 60.118 43.478 11.39 0.00 0.00 2.29
3637 5982 3.251729 CAGGGCATTGCATACACAGATAC 59.748 47.826 11.39 0.00 0.00 2.24
3638 5983 3.136260 TCAGGGCATTGCATACACAGATA 59.864 43.478 11.39 0.00 0.00 1.98
3639 5984 2.092267 TCAGGGCATTGCATACACAGAT 60.092 45.455 11.39 0.00 0.00 2.90
3640 5985 1.281577 TCAGGGCATTGCATACACAGA 59.718 47.619 11.39 0.00 0.00 3.41
3641 5986 1.753930 TCAGGGCATTGCATACACAG 58.246 50.000 11.39 0.00 0.00 3.66
3642 5987 2.440517 ATCAGGGCATTGCATACACA 57.559 45.000 11.39 0.00 0.00 3.72
3643 5988 4.637534 CCTATATCAGGGCATTGCATACAC 59.362 45.833 11.39 0.00 41.26 2.90
3644 5989 4.847198 CCTATATCAGGGCATTGCATACA 58.153 43.478 11.39 0.00 41.26 2.29
3655 6000 7.494212 AGCATGTCAGCAACCTATATCAGGG 62.494 48.000 0.00 0.00 42.54 4.45
3656 6001 4.504514 AGCATGTCAGCAACCTATATCAGG 60.505 45.833 0.00 0.00 43.35 3.86
3657 6002 4.639334 AGCATGTCAGCAACCTATATCAG 58.361 43.478 0.00 0.00 36.85 2.90
3658 6003 4.101430 TGAGCATGTCAGCAACCTATATCA 59.899 41.667 0.00 0.00 36.85 2.15
3659 6004 4.635223 TGAGCATGTCAGCAACCTATATC 58.365 43.478 0.00 0.00 36.85 1.63
3660 6005 4.639334 CTGAGCATGTCAGCAACCTATAT 58.361 43.478 10.89 0.00 46.41 0.86
3661 6006 4.063998 CTGAGCATGTCAGCAACCTATA 57.936 45.455 10.89 0.00 46.41 1.31
3662 6007 2.915349 CTGAGCATGTCAGCAACCTAT 58.085 47.619 10.89 0.00 46.41 2.57
3663 6008 2.391616 CTGAGCATGTCAGCAACCTA 57.608 50.000 10.89 0.00 46.41 3.08
3664 6009 3.244764 CTGAGCATGTCAGCAACCT 57.755 52.632 10.89 0.00 46.41 3.50
3694 6070 4.150098 CACCGTAAAAAGTCTCCTTTCGAG 59.850 45.833 0.00 0.00 40.01 4.04
3695 6071 4.053295 CACCGTAAAAAGTCTCCTTTCGA 58.947 43.478 0.00 0.00 40.01 3.71
3696 6072 3.363673 GCACCGTAAAAAGTCTCCTTTCG 60.364 47.826 0.00 0.00 40.01 3.46
3701 6077 2.418976 GGATGCACCGTAAAAAGTCTCC 59.581 50.000 0.00 0.00 0.00 3.71
3703 6079 3.418684 AGGATGCACCGTAAAAAGTCT 57.581 42.857 0.00 0.00 44.74 3.24
3704 6080 4.251268 AGTAGGATGCACCGTAAAAAGTC 58.749 43.478 0.00 0.00 44.74 3.01
3705 6081 4.281898 AGTAGGATGCACCGTAAAAAGT 57.718 40.909 0.00 0.00 44.74 2.66
3706 6082 4.569564 GGTAGTAGGATGCACCGTAAAAAG 59.430 45.833 0.00 0.00 44.74 2.27
3707 6083 4.506758 GGTAGTAGGATGCACCGTAAAAA 58.493 43.478 0.00 0.00 44.74 1.94
3708 6084 3.118665 GGGTAGTAGGATGCACCGTAAAA 60.119 47.826 0.00 0.00 44.74 1.52
3709 6085 2.431782 GGGTAGTAGGATGCACCGTAAA 59.568 50.000 0.00 0.00 44.74 2.01
3710 6086 2.034124 GGGTAGTAGGATGCACCGTAA 58.966 52.381 0.00 0.00 44.74 3.18
3711 6087 1.216175 AGGGTAGTAGGATGCACCGTA 59.784 52.381 0.00 0.00 44.74 4.02
3712 6088 0.032416 AGGGTAGTAGGATGCACCGT 60.032 55.000 0.00 0.00 44.74 4.83
3716 6092 4.288626 AGTTTCAAAGGGTAGTAGGATGCA 59.711 41.667 0.00 0.00 0.00 3.96
3718 6094 6.155393 AGAGAGTTTCAAAGGGTAGTAGGATG 59.845 42.308 0.00 0.00 0.00 3.51
3720 6096 5.652324 AGAGAGTTTCAAAGGGTAGTAGGA 58.348 41.667 0.00 0.00 0.00 2.94
3721 6097 6.361768 AAGAGAGTTTCAAAGGGTAGTAGG 57.638 41.667 0.00 0.00 0.00 3.18
3722 6098 7.672240 AGAAAGAGAGTTTCAAAGGGTAGTAG 58.328 38.462 0.68 0.00 0.00 2.57
3723 6099 7.613551 AGAAAGAGAGTTTCAAAGGGTAGTA 57.386 36.000 0.68 0.00 0.00 1.82
3725 6101 7.809546 AAAGAAAGAGAGTTTCAAAGGGTAG 57.190 36.000 0.68 0.00 0.00 3.18
3726 6102 7.012044 CGAAAAGAAAGAGAGTTTCAAAGGGTA 59.988 37.037 0.68 0.00 31.66 3.69
3741 6582 7.079182 TGCTAACAAGAAACGAAAAGAAAGA 57.921 32.000 0.00 0.00 0.00 2.52
3773 6617 3.005050 TCTCAAAGCACAAGCAAGAATGG 59.995 43.478 0.00 0.00 45.49 3.16
3780 6624 3.193267 ACAACTTTCTCAAAGCACAAGCA 59.807 39.130 0.00 0.00 45.49 3.91
3822 6666 0.674581 TCCTGCACAGCCGAGAAATG 60.675 55.000 0.00 0.00 0.00 2.32
3832 6676 2.809665 GCTCCCTTGATATCCTGCACAG 60.810 54.545 0.00 0.00 0.00 3.66
3842 6686 4.968719 TCATCTTTAGTGGCTCCCTTGATA 59.031 41.667 0.00 0.00 0.00 2.15
3887 6731 6.894339 TTGTCTTTCCACCTCCTAAAATTC 57.106 37.500 0.00 0.00 0.00 2.17
3893 6737 3.496160 GCACTTTGTCTTTCCACCTCCTA 60.496 47.826 0.00 0.00 0.00 2.94
3918 6762 7.533900 CACACGTATCTGAAAATACACCTTTTG 59.466 37.037 0.00 0.00 32.66 2.44
3971 6815 0.964358 ATGGCTTGCTCTGGCTGAAC 60.964 55.000 0.00 0.00 39.59 3.18
4001 6845 4.559153 CATGGCCTTTTAACAACTCAAGG 58.441 43.478 3.32 0.00 39.15 3.61
4039 6883 2.109126 GGATGAACCGGTGCTCAGC 61.109 63.158 15.35 15.01 0.00 4.26
4040 6884 0.460987 GAGGATGAACCGGTGCTCAG 60.461 60.000 15.35 0.00 44.74 3.35
4047 6891 1.961180 AAGCGGAGAGGATGAACCGG 61.961 60.000 0.00 0.00 44.61 5.28
4056 6900 2.266055 GGTGGTCAAGCGGAGAGG 59.734 66.667 0.00 0.00 0.00 3.69
4057 6901 1.079543 CTGGTGGTCAAGCGGAGAG 60.080 63.158 0.00 0.00 34.33 3.20
4072 6916 5.066893 CACTTCATATCATCCACCAAACTGG 59.933 44.000 0.00 0.00 45.02 4.00
4074 6918 5.819991 ACACTTCATATCATCCACCAAACT 58.180 37.500 0.00 0.00 0.00 2.66
4081 6925 6.652053 TCATGTCAACACTTCATATCATCCA 58.348 36.000 0.00 0.00 0.00 3.41
4087 6931 8.239314 GTGAAACATCATGTCAACACTTCATAT 58.761 33.333 11.98 0.00 36.32 1.78
4096 6940 3.820467 TGGGAGTGAAACATCATGTCAAC 59.180 43.478 0.00 0.00 41.43 3.18
4106 6950 5.780282 TCTTTAGATCTCTGGGAGTGAAACA 59.220 40.000 0.00 0.00 41.43 2.83
4130 6974 3.006537 ACATGTACTCGTTGGTAGCAACT 59.993 43.478 29.30 17.01 33.21 3.16
4133 6977 4.787260 TTACATGTACTCGTTGGTAGCA 57.213 40.909 4.68 0.00 0.00 3.49
4155 6999 6.092259 CACCGTTACTGCTAAAGATAAAAGCT 59.908 38.462 0.00 0.00 37.16 3.74
4170 7014 1.460743 CACATGCAGTCACCGTTACTG 59.539 52.381 8.28 8.28 45.80 2.74
4171 7015 1.608025 CCACATGCAGTCACCGTTACT 60.608 52.381 0.00 0.00 0.00 2.24
4172 7016 0.796312 CCACATGCAGTCACCGTTAC 59.204 55.000 0.00 0.00 0.00 2.50
4173 7017 0.394938 ACCACATGCAGTCACCGTTA 59.605 50.000 0.00 0.00 0.00 3.18
4174 7018 0.884704 GACCACATGCAGTCACCGTT 60.885 55.000 10.11 0.00 33.08 4.44
4175 7019 1.301716 GACCACATGCAGTCACCGT 60.302 57.895 10.11 0.00 33.08 4.83
4176 7020 2.034879 GGACCACATGCAGTCACCG 61.035 63.158 15.40 0.00 34.58 4.94
4177 7021 0.537143 TTGGACCACATGCAGTCACC 60.537 55.000 15.40 3.13 34.58 4.02
4178 7022 0.877071 CTTGGACCACATGCAGTCAC 59.123 55.000 15.40 7.36 34.58 3.67
4179 7023 0.250858 CCTTGGACCACATGCAGTCA 60.251 55.000 15.40 2.25 34.58 3.41
4180 7024 0.036732 TCCTTGGACCACATGCAGTC 59.963 55.000 0.00 7.09 0.00 3.51
4181 7025 0.037303 CTCCTTGGACCACATGCAGT 59.963 55.000 0.00 0.00 0.00 4.40
4182 7026 0.037303 ACTCCTTGGACCACATGCAG 59.963 55.000 0.00 0.00 0.00 4.41
4183 7027 0.478072 AACTCCTTGGACCACATGCA 59.522 50.000 0.00 0.00 0.00 3.96
4184 7028 1.270550 CAAACTCCTTGGACCACATGC 59.729 52.381 0.00 0.00 0.00 4.06
4185 7029 2.554032 GTCAAACTCCTTGGACCACATG 59.446 50.000 0.00 0.00 35.56 3.21
4186 7030 2.810400 CGTCAAACTCCTTGGACCACAT 60.810 50.000 0.00 0.00 35.56 3.21
4187 7031 1.474320 CGTCAAACTCCTTGGACCACA 60.474 52.381 0.00 0.00 35.56 4.17
4188 7032 1.202604 TCGTCAAACTCCTTGGACCAC 60.203 52.381 0.00 0.00 35.56 4.16
4189 7033 1.124780 TCGTCAAACTCCTTGGACCA 58.875 50.000 0.00 0.00 35.56 4.02
4190 7034 2.474410 ATCGTCAAACTCCTTGGACC 57.526 50.000 0.00 0.00 35.56 4.46
4191 7035 7.169982 CAGATAATATCGTCAAACTCCTTGGAC 59.830 40.741 0.00 0.00 35.56 4.02
4192 7036 7.069455 TCAGATAATATCGTCAAACTCCTTGGA 59.931 37.037 0.00 0.00 35.56 3.53
4193 7037 7.210174 TCAGATAATATCGTCAAACTCCTTGG 58.790 38.462 0.00 0.00 35.56 3.61
4194 7038 8.138074 TCTCAGATAATATCGTCAAACTCCTTG 58.862 37.037 0.00 0.00 36.25 3.61
4195 7039 8.239038 TCTCAGATAATATCGTCAAACTCCTT 57.761 34.615 0.00 0.00 0.00 3.36
4196 7040 7.825331 TCTCAGATAATATCGTCAAACTCCT 57.175 36.000 0.00 0.00 0.00 3.69
4197 7041 8.873215 TTTCTCAGATAATATCGTCAAACTCC 57.127 34.615 0.00 0.00 0.00 3.85
4199 7043 9.877178 AGTTTTCTCAGATAATATCGTCAAACT 57.123 29.630 10.47 10.47 0.00 2.66
4214 7058 8.950210 CCAAATTATTGCTAGAGTTTTCTCAGA 58.050 33.333 0.00 0.00 40.93 3.27
4215 7059 8.950210 TCCAAATTATTGCTAGAGTTTTCTCAG 58.050 33.333 0.00 0.00 40.93 3.35
4216 7060 8.730680 GTCCAAATTATTGCTAGAGTTTTCTCA 58.269 33.333 0.00 0.00 40.93 3.27
4217 7061 8.730680 TGTCCAAATTATTGCTAGAGTTTTCTC 58.269 33.333 0.00 0.00 39.88 2.87
4218 7062 8.635765 TGTCCAAATTATTGCTAGAGTTTTCT 57.364 30.769 0.00 0.00 35.10 2.52
4219 7063 8.515414 ACTGTCCAAATTATTGCTAGAGTTTTC 58.485 33.333 0.00 0.00 35.10 2.29
4220 7064 8.299570 CACTGTCCAAATTATTGCTAGAGTTTT 58.700 33.333 0.00 0.00 35.10 2.43
4221 7065 7.665559 TCACTGTCCAAATTATTGCTAGAGTTT 59.334 33.333 0.00 0.00 35.10 2.66
4222 7066 7.119846 GTCACTGTCCAAATTATTGCTAGAGTT 59.880 37.037 0.00 0.00 35.10 3.01
4223 7067 6.595716 GTCACTGTCCAAATTATTGCTAGAGT 59.404 38.462 0.00 0.00 35.10 3.24
4224 7068 6.037610 GGTCACTGTCCAAATTATTGCTAGAG 59.962 42.308 0.00 0.00 35.10 2.43
4225 7069 5.880332 GGTCACTGTCCAAATTATTGCTAGA 59.120 40.000 0.00 0.00 35.10 2.43
4226 7070 5.220662 CGGTCACTGTCCAAATTATTGCTAG 60.221 44.000 0.00 0.00 35.10 3.42
4227 7071 4.634004 CGGTCACTGTCCAAATTATTGCTA 59.366 41.667 0.00 0.00 35.10 3.49
4228 7072 3.440173 CGGTCACTGTCCAAATTATTGCT 59.560 43.478 0.00 0.00 35.10 3.91
4229 7073 3.438781 TCGGTCACTGTCCAAATTATTGC 59.561 43.478 0.00 0.00 35.10 3.56
4230 7074 4.695455 ACTCGGTCACTGTCCAAATTATTG 59.305 41.667 0.00 0.00 36.25 1.90
4231 7075 4.906618 ACTCGGTCACTGTCCAAATTATT 58.093 39.130 0.00 0.00 0.00 1.40
4232 7076 4.553330 ACTCGGTCACTGTCCAAATTAT 57.447 40.909 0.00 0.00 0.00 1.28
4233 7077 4.525487 AGTACTCGGTCACTGTCCAAATTA 59.475 41.667 0.00 0.00 0.00 1.40
4234 7078 2.930826 ACTCGGTCACTGTCCAAATT 57.069 45.000 0.00 0.00 0.00 1.82
4235 7079 2.897969 AGTACTCGGTCACTGTCCAAAT 59.102 45.455 0.00 0.00 0.00 2.32
4236 7080 2.313317 AGTACTCGGTCACTGTCCAAA 58.687 47.619 0.00 0.00 0.00 3.28
4237 7081 1.991121 AGTACTCGGTCACTGTCCAA 58.009 50.000 0.00 0.00 0.00 3.53
4238 7082 1.991121 AAGTACTCGGTCACTGTCCA 58.009 50.000 0.00 0.00 0.00 4.02
4239 7083 3.366781 GGTAAAGTACTCGGTCACTGTCC 60.367 52.174 0.00 0.00 0.00 4.02
4240 7084 3.669023 CGGTAAAGTACTCGGTCACTGTC 60.669 52.174 0.00 0.00 0.00 3.51
4241 7085 2.227388 CGGTAAAGTACTCGGTCACTGT 59.773 50.000 0.00 0.00 0.00 3.55
4242 7086 2.485426 TCGGTAAAGTACTCGGTCACTG 59.515 50.000 0.00 0.00 0.00 3.66
4243 7087 2.485814 GTCGGTAAAGTACTCGGTCACT 59.514 50.000 0.00 0.00 0.00 3.41
4244 7088 2.226437 TGTCGGTAAAGTACTCGGTCAC 59.774 50.000 0.00 0.00 0.00 3.67
4245 7089 2.503331 TGTCGGTAAAGTACTCGGTCA 58.497 47.619 0.00 0.00 0.00 4.02
4246 7090 3.189287 TCTTGTCGGTAAAGTACTCGGTC 59.811 47.826 0.00 0.00 0.00 4.79
4247 7091 3.149196 TCTTGTCGGTAAAGTACTCGGT 58.851 45.455 0.00 0.00 0.00 4.69
4248 7092 3.837213 TCTTGTCGGTAAAGTACTCGG 57.163 47.619 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.