Multiple sequence alignment - TraesCS3B01G061800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G061800 chr3B 100.000 3614 0 0 1 3614 34012226 34008613 0.000000e+00 6674.0
1 TraesCS3B01G061800 chr3B 93.190 1674 110 1 962 2631 34151525 34149852 0.000000e+00 2457.0
2 TraesCS3B01G061800 chr3B 92.712 1674 113 3 962 2631 34196432 34194764 0.000000e+00 2407.0
3 TraesCS3B01G061800 chr3B 98.309 828 8 3 114 936 34212780 34211954 0.000000e+00 1447.0
4 TraesCS3B01G061800 chr3B 98.529 612 9 0 114 725 34106057 34105446 0.000000e+00 1081.0
5 TraesCS3B01G061800 chr3B 98.754 562 7 0 114 675 34156924 34156363 0.000000e+00 1000.0
6 TraesCS3B01G061800 chr3B 85.879 779 101 7 1863 2640 34055241 34054471 0.000000e+00 821.0
7 TraesCS3B01G061800 chr3B 91.274 573 40 6 3012 3576 34149566 34148996 0.000000e+00 773.0
8 TraesCS3B01G061800 chr3B 90.977 532 39 5 3012 3535 34203430 34202900 0.000000e+00 708.0
9 TraesCS3B01G061800 chr3B 90.054 372 33 3 3245 3612 34053950 34053579 2.520000e-131 479.0
10 TraesCS3B01G061800 chr3B 97.619 210 4 1 728 936 34105182 34104973 3.430000e-95 359.0
11 TraesCS3B01G061800 chr3B 93.088 217 14 1 3026 3241 34054214 34053998 2.090000e-82 316.0
12 TraesCS3B01G061800 chr3B 89.494 257 11 4 2763 3011 34149776 34149528 9.740000e-81 311.0
13 TraesCS3B01G061800 chr3B 98.780 164 1 1 774 936 34156121 34155958 1.270000e-74 291.0
14 TraesCS3B01G061800 chr3B 87.940 199 15 4 2763 2959 34054404 34054213 3.630000e-55 226.0
15 TraesCS3B01G061800 chr3B 95.575 113 4 1 4 116 34158112 34158001 2.870000e-41 180.0
16 TraesCS3B01G061800 chr3B 95.575 113 4 1 4 116 34213991 34213880 2.870000e-41 180.0
17 TraesCS3B01G061800 chr3B 95.495 111 5 0 2901 3011 34203502 34203392 1.030000e-40 178.0
18 TraesCS3B01G061800 chr3B 94.737 114 4 2 4 116 34107270 34107158 3.710000e-40 176.0
19 TraesCS3B01G061800 chr3B 90.244 82 4 1 962 1039 34100512 34100431 1.770000e-18 104.0
20 TraesCS3B01G061800 chr3B 97.500 40 1 0 2972 3011 34009216 34009177 6.470000e-08 69.4
21 TraesCS3B01G061800 chr3B 97.500 40 1 0 3011 3050 34009255 34009216 6.470000e-08 69.4
22 TraesCS3B01G061800 chr3B 100.000 32 0 0 669 700 34011527 34011558 3.900000e-05 60.2
23 TraesCS3B01G061800 chr3B 100.000 32 0 0 669 700 34212194 34212225 3.900000e-05 60.2
24 TraesCS3B01G061800 chr3A 92.219 1645 126 2 1001 2644 28737991 28736348 0.000000e+00 2327.0
25 TraesCS3B01G061800 chr3A 92.036 1645 129 2 1001 2644 28628842 28627199 0.000000e+00 2311.0
26 TraesCS3B01G061800 chr3A 92.036 1645 130 1 1001 2644 28672382 28670738 0.000000e+00 2311.0
27 TraesCS3B01G061800 chr3A 93.564 606 36 2 3012 3614 28626927 28626322 0.000000e+00 900.0
28 TraesCS3B01G061800 chr3A 93.399 606 37 2 3012 3614 28670466 28669861 0.000000e+00 894.0
29 TraesCS3B01G061800 chr3A 93.399 606 35 4 3012 3614 28736077 28735474 0.000000e+00 893.0
30 TraesCS3B01G061800 chr3A 89.384 584 26 10 1 582 28878923 28878374 0.000000e+00 702.0
31 TraesCS3B01G061800 chr3A 89.105 257 12 2 2763 3011 28670676 28670428 4.530000e-79 305.0
32 TraesCS3B01G061800 chr3A 88.716 257 13 2 2763 3011 28627137 28626889 2.110000e-77 300.0
33 TraesCS3B01G061800 chr3A 87.938 257 14 3 2763 3011 28736286 28736039 1.640000e-73 287.0
34 TraesCS3B01G061800 chrUn 94.062 1061 63 0 1571 2631 366591618 366590558 0.000000e+00 1611.0
35 TraesCS3B01G061800 chrUn 90.977 532 39 5 3012 3535 366590272 366589742 0.000000e+00 708.0
36 TraesCS3B01G061800 chrUn 90.977 532 39 5 3012 3535 419984126 419984656 0.000000e+00 708.0
37 TraesCS3B01G061800 chrUn 92.202 436 34 0 2196 2631 419983405 419983840 5.130000e-173 617.0
38 TraesCS3B01G061800 chrUn 89.494 257 11 4 2763 3011 366590482 366590234 9.740000e-81 311.0
39 TraesCS3B01G061800 chrUn 89.494 257 11 4 2763 3011 419983916 419984164 9.740000e-81 311.0
40 TraesCS3B01G061800 chrUn 94.828 116 5 1 1 116 278731469 278731583 2.870000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G061800 chr3B 34008613 34012226 3613 True 2270.933333 6674 98.333333 1 3614 3 chr3B.!!$R3 3613
1 TraesCS3B01G061800 chr3B 34194764 34196432 1668 True 2407.000000 2407 92.712000 962 2631 1 chr3B.!!$R2 1669
2 TraesCS3B01G061800 chr3B 34148996 34151525 2529 True 1180.333333 2457 91.319333 962 3576 3 chr3B.!!$R6 2614
3 TraesCS3B01G061800 chr3B 34211954 34213991 2037 True 813.500000 1447 96.942000 4 936 2 chr3B.!!$R9 932
4 TraesCS3B01G061800 chr3B 34104973 34107270 2297 True 538.666667 1081 96.961667 4 936 3 chr3B.!!$R5 932
5 TraesCS3B01G061800 chr3B 34155958 34158112 2154 True 490.333333 1000 97.703000 4 936 3 chr3B.!!$R7 932
6 TraesCS3B01G061800 chr3B 34053579 34055241 1662 True 460.500000 821 89.240250 1863 3612 4 chr3B.!!$R4 1749
7 TraesCS3B01G061800 chr3B 34202900 34203502 602 True 443.000000 708 93.236000 2901 3535 2 chr3B.!!$R8 634
8 TraesCS3B01G061800 chr3A 28626322 28628842 2520 True 1170.333333 2311 91.438667 1001 3614 3 chr3A.!!$R2 2613
9 TraesCS3B01G061800 chr3A 28669861 28672382 2521 True 1170.000000 2311 91.513333 1001 3614 3 chr3A.!!$R3 2613
10 TraesCS3B01G061800 chr3A 28735474 28737991 2517 True 1169.000000 2327 91.185333 1001 3614 3 chr3A.!!$R4 2613
11 TraesCS3B01G061800 chr3A 28878374 28878923 549 True 702.000000 702 89.384000 1 582 1 chr3A.!!$R1 581
12 TraesCS3B01G061800 chrUn 366589742 366591618 1876 True 876.666667 1611 91.511000 1571 3535 3 chrUn.!!$R1 1964
13 TraesCS3B01G061800 chrUn 419983405 419984656 1251 False 545.333333 708 90.891000 2196 3535 3 chrUn.!!$F2 1339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
951 2322 0.03392 TAGGACTATACCGCGAGCGA 59.966 55.0 19.72 0.0 42.83 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2668 4099 0.112606 AGAGGACCTGACTGACGGAA 59.887 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 105 6.156256 ACCCAAAACATACAGCTCATCTACTA 59.844 38.462 0.00 0.00 0.00 1.82
112 115 6.830912 ACAGCTCATCTACTAATGGCATTAA 58.169 36.000 19.68 6.60 0.00 1.40
659 1765 4.467198 ACTAAATGACCACGGAGTTAGG 57.533 45.455 0.00 0.00 41.61 2.69
920 2291 3.191371 GCAAGGTCAACAAAATCTCCGAT 59.809 43.478 0.00 0.00 0.00 4.18
936 2307 7.798710 ATCTCCGATCTAATTTTCCATAGGA 57.201 36.000 0.00 0.00 0.00 2.94
937 2308 6.994221 TCTCCGATCTAATTTTCCATAGGAC 58.006 40.000 0.00 0.00 0.00 3.85
938 2309 6.782988 TCTCCGATCTAATTTTCCATAGGACT 59.217 38.462 0.00 0.00 0.00 3.85
939 2310 7.948447 TCTCCGATCTAATTTTCCATAGGACTA 59.052 37.037 0.00 0.00 0.00 2.59
940 2311 8.666129 TCCGATCTAATTTTCCATAGGACTAT 57.334 34.615 0.00 0.00 0.00 2.12
941 2312 9.763837 TCCGATCTAATTTTCCATAGGACTATA 57.236 33.333 0.00 0.00 0.00 1.31
942 2313 9.804758 CCGATCTAATTTTCCATAGGACTATAC 57.195 37.037 0.00 0.00 0.00 1.47
943 2314 9.804758 CGATCTAATTTTCCATAGGACTATACC 57.195 37.037 0.00 0.00 0.00 2.73
944 2315 9.804758 GATCTAATTTTCCATAGGACTATACCG 57.195 37.037 0.00 0.00 34.73 4.02
945 2316 7.609056 TCTAATTTTCCATAGGACTATACCGC 58.391 38.462 0.00 0.00 34.73 5.68
946 2317 3.928727 TTTCCATAGGACTATACCGCG 57.071 47.619 0.00 0.00 34.73 6.46
947 2318 2.865119 TCCATAGGACTATACCGCGA 57.135 50.000 8.23 0.00 34.73 5.87
948 2319 2.708051 TCCATAGGACTATACCGCGAG 58.292 52.381 8.23 0.00 34.73 5.03
949 2320 1.132643 CCATAGGACTATACCGCGAGC 59.867 57.143 8.23 0.00 34.73 5.03
950 2321 1.085091 ATAGGACTATACCGCGAGCG 58.915 55.000 8.23 10.86 39.44 5.03
951 2322 0.033920 TAGGACTATACCGCGAGCGA 59.966 55.000 19.72 0.00 42.83 4.93
952 2323 1.207085 GGACTATACCGCGAGCGAG 59.793 63.158 19.72 10.47 42.83 5.03
953 2324 1.505477 GGACTATACCGCGAGCGAGT 61.505 60.000 19.72 13.71 42.83 4.18
954 2325 0.307146 GACTATACCGCGAGCGAGTT 59.693 55.000 19.72 5.33 42.83 3.01
955 2326 0.737219 ACTATACCGCGAGCGAGTTT 59.263 50.000 19.72 11.95 42.83 2.66
956 2327 1.133790 ACTATACCGCGAGCGAGTTTT 59.866 47.619 19.72 8.67 42.83 2.43
957 2328 2.355756 ACTATACCGCGAGCGAGTTTTA 59.644 45.455 19.72 9.24 42.83 1.52
958 2329 1.836383 ATACCGCGAGCGAGTTTTAG 58.164 50.000 19.72 2.59 42.83 1.85
959 2330 0.799534 TACCGCGAGCGAGTTTTAGC 60.800 55.000 19.72 0.00 42.83 3.09
960 2331 2.695646 CGCGAGCGAGTTTTAGCC 59.304 61.111 12.58 0.00 42.83 3.93
991 2362 1.208614 CGGCTGCTGCTTTGAACTC 59.791 57.895 15.64 0.00 39.59 3.01
1035 2410 2.595238 GTCGATCCCACCCAGTACTAT 58.405 52.381 0.00 0.00 0.00 2.12
1149 2524 2.231380 CCACAGGTACAGGGGCCTT 61.231 63.158 0.84 0.00 31.73 4.35
1173 2548 2.427245 CGGGGAGAAGCTGGTCGAT 61.427 63.158 0.00 0.00 0.00 3.59
1253 2628 3.129502 CTACGACCTCCACCGCGA 61.130 66.667 8.23 0.00 0.00 5.87
1270 2645 3.240134 GACAGCGCCAAGGTCCAGA 62.240 63.158 2.29 0.00 0.00 3.86
1283 2658 2.501128 CCAGATCATGGCGGACGT 59.499 61.111 0.00 0.00 43.83 4.34
1305 2680 2.752238 ACCTCGGAGCTGGAGACG 60.752 66.667 11.95 0.00 33.27 4.18
1364 2739 3.749373 CGACGTCGTTGGCGTGTC 61.749 66.667 29.08 0.44 43.04 3.67
1425 2800 3.047877 CCTGCCCGGTTCGTTGTC 61.048 66.667 0.00 0.00 0.00 3.18
1476 2851 2.189521 CCGAATAGGCACCGGCTT 59.810 61.111 0.00 0.00 39.70 4.35
1478 2853 1.449601 CGAATAGGCACCGGCTTGT 60.450 57.895 0.00 0.00 39.70 3.16
1575 2950 1.269102 CGCCGACGATACCTTGATCTT 60.269 52.381 0.00 0.00 43.93 2.40
1662 3037 2.027625 CCTTGACGAGCGTGGGTTC 61.028 63.158 0.00 0.00 0.00 3.62
1690 3065 0.251916 GGACACCCCGATGATGAACA 59.748 55.000 0.00 0.00 0.00 3.18
1737 3112 1.827315 CGTTCGTCACGCACCACAAT 61.827 55.000 0.00 0.00 43.37 2.71
1821 3196 4.157120 GGGCTGGACCGCGTGTAT 62.157 66.667 4.92 0.00 40.62 2.29
2086 3461 2.300967 GGACTGGAGGACATGGCCA 61.301 63.158 22.78 8.56 0.00 5.36
2098 3473 3.567164 GGACATGGCCAATCTCAACATAG 59.433 47.826 14.59 0.00 0.00 2.23
2117 3492 1.791103 GCGGAGGAGGATCTGTCGAG 61.791 65.000 0.00 0.00 33.73 4.04
2133 3508 0.521867 CGAGCGACGATACCAACGAA 60.522 55.000 0.00 0.00 45.77 3.85
2232 3608 1.075601 TTGGGCACTTCTTGGAGGAT 58.924 50.000 0.00 0.00 0.00 3.24
2235 3611 1.473434 GGGCACTTCTTGGAGGATACG 60.473 57.143 0.00 0.00 46.39 3.06
2247 3623 1.812507 GGATACGTGCGTGAACCCC 60.813 63.158 7.55 0.00 0.00 4.95
2268 3644 3.273434 CACGTTCATCATCAACCATCCT 58.727 45.455 0.00 0.00 0.00 3.24
2382 3758 1.805945 CAACGCCTACACGGAGCTC 60.806 63.158 4.71 4.71 35.77 4.09
2394 3770 1.299976 GGAGCTCAATGACCCCGTT 59.700 57.895 17.19 0.00 0.00 4.44
2430 3806 1.548357 TTGAGGAGCAGCTCAGGGAC 61.548 60.000 24.09 6.13 31.08 4.46
2475 3851 1.209127 GGCCATGGACGAAACGTTG 59.791 57.895 18.40 0.00 41.37 4.10
2481 3857 1.019805 TGGACGAAACGTTGTGCACA 61.020 50.000 17.42 17.42 41.37 4.57
2553 3929 0.890542 GCCTCACCATGTTGCTGACA 60.891 55.000 0.00 0.00 43.71 3.58
2659 4090 7.093465 CCTTGTCTATGGTTTCCTAGTTCTGTA 60.093 40.741 0.00 0.00 0.00 2.74
2660 4091 7.166691 TGTCTATGGTTTCCTAGTTCTGTAC 57.833 40.000 0.00 0.00 0.00 2.90
2661 4092 6.154021 TGTCTATGGTTTCCTAGTTCTGTACC 59.846 42.308 0.00 0.00 0.00 3.34
2662 4093 6.380560 GTCTATGGTTTCCTAGTTCTGTACCT 59.619 42.308 0.00 0.00 0.00 3.08
2663 4094 6.958192 TCTATGGTTTCCTAGTTCTGTACCTT 59.042 38.462 0.00 0.00 0.00 3.50
2664 4095 5.479124 TGGTTTCCTAGTTCTGTACCTTC 57.521 43.478 0.00 0.00 0.00 3.46
2665 4096 5.152934 TGGTTTCCTAGTTCTGTACCTTCT 58.847 41.667 0.00 0.00 0.00 2.85
2666 4097 5.605488 TGGTTTCCTAGTTCTGTACCTTCTT 59.395 40.000 0.00 0.00 0.00 2.52
2667 4098 5.932883 GGTTTCCTAGTTCTGTACCTTCTTG 59.067 44.000 0.00 0.00 0.00 3.02
2668 4099 6.464039 GGTTTCCTAGTTCTGTACCTTCTTGT 60.464 42.308 0.00 0.00 0.00 3.16
2669 4100 6.742559 TTCCTAGTTCTGTACCTTCTTGTT 57.257 37.500 0.00 0.00 0.00 2.83
2670 4101 6.342338 TCCTAGTTCTGTACCTTCTTGTTC 57.658 41.667 0.00 0.00 0.00 3.18
2671 4102 5.245526 TCCTAGTTCTGTACCTTCTTGTTCC 59.754 44.000 0.00 0.00 0.00 3.62
2672 4103 3.991367 AGTTCTGTACCTTCTTGTTCCG 58.009 45.455 0.00 0.00 0.00 4.30
2673 4104 3.387050 AGTTCTGTACCTTCTTGTTCCGT 59.613 43.478 0.00 0.00 0.00 4.69
2674 4105 3.655276 TCTGTACCTTCTTGTTCCGTC 57.345 47.619 0.00 0.00 0.00 4.79
2675 4106 2.960384 TCTGTACCTTCTTGTTCCGTCA 59.040 45.455 0.00 0.00 0.00 4.35
2676 4107 3.005472 TCTGTACCTTCTTGTTCCGTCAG 59.995 47.826 0.00 0.00 0.00 3.51
2677 4108 2.696707 TGTACCTTCTTGTTCCGTCAGT 59.303 45.455 0.00 0.00 0.00 3.41
2678 4109 2.528041 ACCTTCTTGTTCCGTCAGTC 57.472 50.000 0.00 0.00 0.00 3.51
2679 4110 1.760613 ACCTTCTTGTTCCGTCAGTCA 59.239 47.619 0.00 0.00 0.00 3.41
2680 4111 2.224066 ACCTTCTTGTTCCGTCAGTCAG 60.224 50.000 0.00 0.00 0.00 3.51
2681 4112 2.408050 CTTCTTGTTCCGTCAGTCAGG 58.592 52.381 0.00 0.00 0.00 3.86
2682 4113 1.410004 TCTTGTTCCGTCAGTCAGGT 58.590 50.000 0.00 0.00 0.00 4.00
2683 4114 1.340248 TCTTGTTCCGTCAGTCAGGTC 59.660 52.381 0.00 0.00 0.00 3.85
2684 4115 0.391597 TTGTTCCGTCAGTCAGGTCC 59.608 55.000 0.00 0.00 0.00 4.46
2685 4116 0.469331 TGTTCCGTCAGTCAGGTCCT 60.469 55.000 0.00 0.00 0.00 3.85
2686 4117 0.244178 GTTCCGTCAGTCAGGTCCTC 59.756 60.000 0.00 0.00 0.00 3.71
2687 4118 0.112606 TTCCGTCAGTCAGGTCCTCT 59.887 55.000 0.00 0.00 0.00 3.69
2688 4119 0.322636 TCCGTCAGTCAGGTCCTCTC 60.323 60.000 0.00 0.00 0.00 3.20
2689 4120 0.322997 CCGTCAGTCAGGTCCTCTCT 60.323 60.000 0.00 0.00 0.00 3.10
2690 4121 1.065345 CCGTCAGTCAGGTCCTCTCTA 60.065 57.143 0.00 0.00 0.00 2.43
2691 4122 2.285083 CGTCAGTCAGGTCCTCTCTAG 58.715 57.143 0.00 0.00 0.00 2.43
2692 4123 2.355310 CGTCAGTCAGGTCCTCTCTAGT 60.355 54.545 0.00 0.00 0.00 2.57
2693 4124 3.118702 CGTCAGTCAGGTCCTCTCTAGTA 60.119 52.174 0.00 0.00 0.00 1.82
2694 4125 4.193865 GTCAGTCAGGTCCTCTCTAGTAC 58.806 52.174 0.00 0.00 0.00 2.73
2695 4126 4.080751 GTCAGTCAGGTCCTCTCTAGTACT 60.081 50.000 0.00 0.00 0.00 2.73
2696 4127 5.129155 GTCAGTCAGGTCCTCTCTAGTACTA 59.871 48.000 1.89 1.89 0.00 1.82
2697 4128 5.364446 TCAGTCAGGTCCTCTCTAGTACTAG 59.636 48.000 21.87 21.87 34.56 2.57
2698 4129 5.129815 CAGTCAGGTCCTCTCTAGTACTAGT 59.870 48.000 25.58 0.00 34.84 2.57
2699 4130 5.727766 AGTCAGGTCCTCTCTAGTACTAGTT 59.272 44.000 25.58 4.22 34.84 2.24
2700 4131 6.216046 AGTCAGGTCCTCTCTAGTACTAGTTT 59.784 42.308 25.58 5.08 34.84 2.66
2701 4132 6.316890 GTCAGGTCCTCTCTAGTACTAGTTTG 59.683 46.154 25.58 17.62 34.84 2.93
2702 4133 6.012683 TCAGGTCCTCTCTAGTACTAGTTTGT 60.013 42.308 25.58 5.10 34.84 2.83
2703 4134 7.181665 TCAGGTCCTCTCTAGTACTAGTTTGTA 59.818 40.741 25.58 8.61 34.84 2.41
2704 4135 7.828223 CAGGTCCTCTCTAGTACTAGTTTGTAA 59.172 40.741 25.58 7.95 34.84 2.41
2705 4136 7.828717 AGGTCCTCTCTAGTACTAGTTTGTAAC 59.171 40.741 25.58 17.61 34.84 2.50
2706 4137 7.609532 GGTCCTCTCTAGTACTAGTTTGTAACA 59.390 40.741 25.58 6.64 34.84 2.41
2707 4138 8.667463 GTCCTCTCTAGTACTAGTTTGTAACAG 58.333 40.741 25.58 14.87 34.84 3.16
2708 4139 8.600668 TCCTCTCTAGTACTAGTTTGTAACAGA 58.399 37.037 25.58 17.66 34.84 3.41
2709 4140 8.667463 CCTCTCTAGTACTAGTTTGTAACAGAC 58.333 40.741 25.58 0.00 34.84 3.51
2710 4141 9.217278 CTCTCTAGTACTAGTTTGTAACAGACA 57.783 37.037 25.58 4.71 33.80 3.41
2711 4142 9.565090 TCTCTAGTACTAGTTTGTAACAGACAA 57.435 33.333 25.58 4.32 38.71 3.18
2723 4154 7.867305 TTGTAACAGACAATGTGGTTTCTAA 57.133 32.000 5.53 0.00 43.30 2.10
2724 4155 8.458573 TTGTAACAGACAATGTGGTTTCTAAT 57.541 30.769 5.53 0.00 43.30 1.73
2725 4156 9.562408 TTGTAACAGACAATGTGGTTTCTAATA 57.438 29.630 5.53 0.00 43.30 0.98
2726 4157 9.733556 TGTAACAGACAATGTGGTTTCTAATAT 57.266 29.630 5.53 0.00 43.00 1.28
2742 4173 6.282199 TCTAATATAGAAATCGGACAGGCC 57.718 41.667 0.00 0.00 0.00 5.19
2758 4189 7.443259 GGACAGGCCGCTTTATTTATATAAA 57.557 36.000 10.27 10.27 35.48 1.40
2759 4190 7.878036 GGACAGGCCGCTTTATTTATATAAAA 58.122 34.615 11.80 0.00 36.16 1.52
2760 4191 8.354426 GGACAGGCCGCTTTATTTATATAAAAA 58.646 33.333 11.80 2.63 36.16 1.94
2812 4243 9.706691 ATTTCTGTACTTCGAGAAATAACAAGA 57.293 29.630 14.16 0.00 43.79 3.02
2813 4244 9.537192 TTTCTGTACTTCGAGAAATAACAAGAA 57.463 29.630 2.80 0.00 34.09 2.52
2814 4245 9.537192 TTCTGTACTTCGAGAAATAACAAGAAA 57.463 29.630 0.00 0.00 0.00 2.52
2815 4246 9.537192 TCTGTACTTCGAGAAATAACAAGAAAA 57.463 29.630 0.00 0.00 0.00 2.29
2816 4247 9.582223 CTGTACTTCGAGAAATAACAAGAAAAC 57.418 33.333 0.00 0.00 0.00 2.43
2817 4248 9.100554 TGTACTTCGAGAAATAACAAGAAAACA 57.899 29.630 0.00 0.00 0.00 2.83
2818 4249 9.925268 GTACTTCGAGAAATAACAAGAAAACAA 57.075 29.630 0.00 0.00 0.00 2.83
2864 4296 7.706179 TCTTATTTTAATGGACCGTAACTACCG 59.294 37.037 0.00 0.00 0.00 4.02
2983 4425 1.128200 CCGTCCCTGAATCCCACATA 58.872 55.000 0.00 0.00 0.00 2.29
2984 4426 1.202651 CCGTCCCTGAATCCCACATAC 60.203 57.143 0.00 0.00 0.00 2.39
2985 4427 1.484653 CGTCCCTGAATCCCACATACA 59.515 52.381 0.00 0.00 0.00 2.29
2986 4428 2.093181 CGTCCCTGAATCCCACATACAA 60.093 50.000 0.00 0.00 0.00 2.41
2987 4429 3.279434 GTCCCTGAATCCCACATACAAC 58.721 50.000 0.00 0.00 0.00 3.32
2988 4430 2.916269 TCCCTGAATCCCACATACAACA 59.084 45.455 0.00 0.00 0.00 3.33
2989 4431 3.332187 TCCCTGAATCCCACATACAACAA 59.668 43.478 0.00 0.00 0.00 2.83
2990 4432 3.696051 CCCTGAATCCCACATACAACAAG 59.304 47.826 0.00 0.00 0.00 3.16
2991 4433 4.567537 CCCTGAATCCCACATACAACAAGA 60.568 45.833 0.00 0.00 0.00 3.02
2992 4434 5.195940 CCTGAATCCCACATACAACAAGAT 58.804 41.667 0.00 0.00 0.00 2.40
2993 4435 5.066893 CCTGAATCCCACATACAACAAGATG 59.933 44.000 0.00 0.00 0.00 2.90
2994 4436 5.569355 TGAATCCCACATACAACAAGATGT 58.431 37.500 0.00 0.00 36.73 3.06
2995 4437 6.009589 TGAATCCCACATACAACAAGATGTT 58.990 36.000 0.00 0.00 42.08 2.71
2996 4438 6.493115 TGAATCCCACATACAACAAGATGTTT 59.507 34.615 0.00 0.00 38.77 2.83
2997 4439 5.957842 TCCCACATACAACAAGATGTTTC 57.042 39.130 0.00 0.00 38.77 2.78
2998 4440 5.630121 TCCCACATACAACAAGATGTTTCT 58.370 37.500 0.00 0.00 38.77 2.52
2999 4441 6.774673 TCCCACATACAACAAGATGTTTCTA 58.225 36.000 0.00 0.00 38.77 2.10
3000 4442 6.653320 TCCCACATACAACAAGATGTTTCTAC 59.347 38.462 0.00 0.00 38.77 2.59
3001 4443 6.655003 CCCACATACAACAAGATGTTTCTACT 59.345 38.462 0.00 0.00 38.77 2.57
3002 4444 7.148407 CCCACATACAACAAGATGTTTCTACTC 60.148 40.741 0.00 0.00 38.77 2.59
3003 4445 7.148407 CCACATACAACAAGATGTTTCTACTCC 60.148 40.741 0.00 0.00 38.77 3.85
3004 4446 7.387673 CACATACAACAAGATGTTTCTACTCCA 59.612 37.037 0.00 0.00 38.77 3.86
3005 4447 7.936847 ACATACAACAAGATGTTTCTACTCCAA 59.063 33.333 0.00 0.00 38.77 3.53
3006 4448 8.783093 CATACAACAAGATGTTTCTACTCCAAA 58.217 33.333 0.00 0.00 38.77 3.28
3007 4449 7.027778 ACAACAAGATGTTTCTACTCCAAAC 57.972 36.000 0.00 0.00 38.77 2.93
3008 4450 5.924475 ACAAGATGTTTCTACTCCAAACG 57.076 39.130 0.00 0.00 36.66 3.60
3009 4451 4.755123 ACAAGATGTTTCTACTCCAAACGG 59.245 41.667 0.00 0.00 36.66 4.44
3010 4452 4.618920 AGATGTTTCTACTCCAAACGGT 57.381 40.909 0.00 0.00 36.66 4.83
3011 4453 4.315803 AGATGTTTCTACTCCAAACGGTG 58.684 43.478 0.00 0.00 36.66 4.94
3012 4454 3.823281 TGTTTCTACTCCAAACGGTGA 57.177 42.857 0.00 0.00 36.66 4.02
3013 4455 4.139859 TGTTTCTACTCCAAACGGTGAA 57.860 40.909 0.00 0.00 36.66 3.18
3014 4456 4.710324 TGTTTCTACTCCAAACGGTGAAT 58.290 39.130 0.00 0.00 36.66 2.57
3015 4457 4.753107 TGTTTCTACTCCAAACGGTGAATC 59.247 41.667 0.00 0.00 36.66 2.52
3016 4458 3.604875 TCTACTCCAAACGGTGAATCC 57.395 47.619 0.00 0.00 0.00 3.01
3017 4459 2.235402 TCTACTCCAAACGGTGAATCCC 59.765 50.000 0.00 0.00 0.00 3.85
3018 4460 0.768622 ACTCCAAACGGTGAATCCCA 59.231 50.000 0.00 0.00 0.00 4.37
3019 4461 1.165270 CTCCAAACGGTGAATCCCAC 58.835 55.000 0.00 0.00 44.95 4.61
3077 4519 1.605058 AACATCTACACTCGCCGGCT 61.605 55.000 26.68 7.77 0.00 5.52
3145 4593 2.816087 AGTTGCTGTGATTTGCTACAGG 59.184 45.455 0.00 0.00 43.41 4.00
3189 4638 3.126858 TCATCGCATCCAACAAAGCTTAC 59.873 43.478 0.00 0.00 0.00 2.34
3233 4682 2.487934 AGTAGACGCAATGCCATCATC 58.512 47.619 0.00 0.00 31.27 2.92
3241 4690 2.793585 GCAATGCCATCATCACTCAACG 60.794 50.000 0.00 0.00 31.27 4.10
3252 4745 5.237815 TCATCACTCAACGTTAAGCAAGAT 58.762 37.500 0.00 0.00 0.00 2.40
3324 4819 7.926018 ACCCTTTTTAAACACTTGATGATGTTC 59.074 33.333 0.00 0.00 38.08 3.18
3421 4918 4.741321 TTCCAAGAATTGCATGGAATCC 57.259 40.909 13.26 0.00 46.35 3.01
3465 4962 5.237344 GCGAATAGAAGTTACAATCTGGCAT 59.763 40.000 0.00 0.00 0.00 4.40
3480 4977 5.268118 TCTGGCATACATCTACAAGTCAG 57.732 43.478 0.00 0.00 0.00 3.51
3487 4984 8.577296 GGCATACATCTACAAGTCAGATAGTAA 58.423 37.037 0.00 0.00 31.48 2.24
3526 5023 5.953183 TCAATTGATTTGCAGTGGACATAC 58.047 37.500 3.38 0.00 35.16 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
659 1765 3.030882 GCCGAGGTCGATTAGCGC 61.031 66.667 0.00 0.00 43.02 5.92
920 2291 7.576287 CGCGGTATAGTCCTATGGAAAATTAGA 60.576 40.741 0.00 0.00 31.38 2.10
936 2307 0.737219 AAACTCGCTCGCGGTATAGT 59.263 50.000 6.13 4.59 40.25 2.12
937 2308 1.836383 AAAACTCGCTCGCGGTATAG 58.164 50.000 6.13 3.94 40.25 1.31
938 2309 2.855953 GCTAAAACTCGCTCGCGGTATA 60.856 50.000 6.13 5.26 40.25 1.47
939 2310 1.836383 CTAAAACTCGCTCGCGGTAT 58.164 50.000 6.13 4.48 40.25 2.73
940 2311 0.799534 GCTAAAACTCGCTCGCGGTA 60.800 55.000 6.13 0.00 40.25 4.02
941 2312 2.092882 GCTAAAACTCGCTCGCGGT 61.093 57.895 6.13 5.60 40.25 5.68
942 2313 2.695646 GCTAAAACTCGCTCGCGG 59.304 61.111 6.13 4.97 40.25 6.46
943 2314 2.695646 GGCTAAAACTCGCTCGCG 59.304 61.111 0.00 0.00 41.35 5.87
944 2315 1.804326 TCGGCTAAAACTCGCTCGC 60.804 57.895 0.00 0.00 0.00 5.03
945 2316 1.730593 CGTCGGCTAAAACTCGCTCG 61.731 60.000 0.00 0.00 0.00 5.03
946 2317 1.989163 CGTCGGCTAAAACTCGCTC 59.011 57.895 0.00 0.00 0.00 5.03
947 2318 2.092882 GCGTCGGCTAAAACTCGCT 61.093 57.895 0.00 0.00 40.39 4.93
948 2319 2.377310 TGCGTCGGCTAAAACTCGC 61.377 57.895 0.00 0.00 43.14 5.03
949 2320 1.414897 GTGCGTCGGCTAAAACTCG 59.585 57.895 0.00 0.00 40.82 4.18
950 2321 1.414897 CGTGCGTCGGCTAAAACTC 59.585 57.895 0.00 0.00 40.82 3.01
951 2322 2.664436 GCGTGCGTCGGCTAAAACT 61.664 57.895 0.00 0.00 40.82 2.66
952 2323 2.202133 GCGTGCGTCGGCTAAAAC 60.202 61.111 0.00 0.00 40.82 2.43
991 2362 1.371022 CGTCCGCCATCGATCTCAG 60.371 63.158 0.00 0.00 38.10 3.35
1035 2410 2.047844 GCGCTGAGCCTGTTCTGA 60.048 61.111 0.00 0.00 40.81 3.27
1173 2548 3.311110 GCCAGGGACTCGGTGACA 61.311 66.667 0.00 0.00 34.60 3.58
1253 2628 2.527951 GATCTGGACCTTGGCGCTGT 62.528 60.000 7.64 0.00 0.00 4.40
1255 2630 1.630126 ATGATCTGGACCTTGGCGCT 61.630 55.000 7.64 0.00 0.00 5.92
1270 2645 4.221422 CCCGACGTCCGCCATGAT 62.221 66.667 10.58 0.00 36.84 2.45
1461 2836 2.098293 CACAAGCCGGTGCCTATTC 58.902 57.895 1.90 0.00 38.69 1.75
1563 2938 6.575244 TGGTTCACCATAAGATCAAGGTAT 57.425 37.500 0.00 0.00 42.01 2.73
1586 2961 2.564947 GTGAAGACAGACCTCACCTCAT 59.435 50.000 0.00 0.00 0.00 2.90
1618 2993 1.586564 GGATGAAGGAGACGACGCG 60.587 63.158 3.53 3.53 0.00 6.01
1620 2995 1.586564 GCGGATGAAGGAGACGACG 60.587 63.158 0.00 0.00 0.00 5.12
1821 3196 0.614697 TGAACTGCCTCCCGATCTCA 60.615 55.000 0.00 0.00 0.00 3.27
1998 3373 2.658422 GGCTTGTCGGTCCCGTTA 59.342 61.111 5.52 0.00 40.74 3.18
2046 3421 0.527385 TGATCATGTCGATTCGCGCA 60.527 50.000 8.75 3.52 40.61 6.09
2086 3461 2.366916 CCTCCTCCGCTATGTTGAGATT 59.633 50.000 0.00 0.00 0.00 2.40
2098 3473 1.791103 CTCGACAGATCCTCCTCCGC 61.791 65.000 0.00 0.00 0.00 5.54
2117 3492 2.724349 AGTATTCGTTGGTATCGTCGC 58.276 47.619 0.00 0.00 0.00 5.19
2125 3500 3.873910 CCTCCATCAAGTATTCGTTGGT 58.126 45.455 0.00 0.00 0.00 3.67
2133 3508 2.648059 GCACAAGCCTCCATCAAGTAT 58.352 47.619 0.00 0.00 33.58 2.12
2155 3530 1.141591 GGGCACGTAATGTCGTACCG 61.142 60.000 0.00 0.00 45.09 4.02
2205 3581 0.771127 AGAAGTGCCCAACCAGCTTA 59.229 50.000 0.00 0.00 0.00 3.09
2247 3623 3.064408 CAGGATGGTTGATGATGAACGTG 59.936 47.826 0.00 0.00 0.00 4.49
2268 3644 0.749049 CGAGTGGGCTCATGATCTCA 59.251 55.000 0.00 0.00 41.71 3.27
2340 3716 3.504906 ACACCTCATGCTTGTTGATGAAG 59.495 43.478 0.00 0.00 0.00 3.02
2382 3758 0.888736 TCTGCACAACGGGGTCATTG 60.889 55.000 0.00 0.00 0.00 2.82
2394 3770 3.772853 AAACCGCTGCCTCTGCACA 62.773 57.895 0.00 0.00 44.23 4.57
2475 3851 1.291877 CGTACTCAAGGGCTGTGCAC 61.292 60.000 10.75 10.75 0.00 4.57
2505 3881 4.658786 AGACCCCAGCCTCCGGTT 62.659 66.667 0.00 0.00 0.00 4.44
2523 3899 1.271127 TGGTGAGGCGATCAATCCCA 61.271 55.000 0.00 0.00 40.43 4.37
2553 3929 4.790790 ACCTCCTTTATGTTCTGGGAATCT 59.209 41.667 0.00 0.00 0.00 2.40
2631 4007 2.808906 AGGAAACCATAGACAAGGGC 57.191 50.000 0.00 0.00 0.00 5.19
2659 4090 1.760613 TGACTGACGGAACAAGAAGGT 59.239 47.619 0.00 0.00 0.00 3.50
2660 4091 2.408050 CTGACTGACGGAACAAGAAGG 58.592 52.381 0.00 0.00 0.00 3.46
2661 4092 2.224066 ACCTGACTGACGGAACAAGAAG 60.224 50.000 0.00 0.00 0.00 2.85
2662 4093 1.760613 ACCTGACTGACGGAACAAGAA 59.239 47.619 0.00 0.00 0.00 2.52
2663 4094 1.340248 GACCTGACTGACGGAACAAGA 59.660 52.381 0.00 0.00 0.00 3.02
2664 4095 1.605712 GGACCTGACTGACGGAACAAG 60.606 57.143 0.00 0.00 0.00 3.16
2665 4096 0.391597 GGACCTGACTGACGGAACAA 59.608 55.000 0.00 0.00 0.00 2.83
2666 4097 0.469331 AGGACCTGACTGACGGAACA 60.469 55.000 0.00 0.00 0.00 3.18
2667 4098 0.244178 GAGGACCTGACTGACGGAAC 59.756 60.000 0.00 0.00 0.00 3.62
2668 4099 0.112606 AGAGGACCTGACTGACGGAA 59.887 55.000 0.00 0.00 0.00 4.30
2669 4100 0.322636 GAGAGGACCTGACTGACGGA 60.323 60.000 0.00 0.00 0.00 4.69
2670 4101 0.322997 AGAGAGGACCTGACTGACGG 60.323 60.000 0.00 0.00 0.00 4.79
2671 4102 2.285083 CTAGAGAGGACCTGACTGACG 58.715 57.143 0.00 0.00 0.00 4.35
2672 4103 3.359695 ACTAGAGAGGACCTGACTGAC 57.640 52.381 0.00 0.00 0.00 3.51
2673 4104 4.105577 AGTACTAGAGAGGACCTGACTGA 58.894 47.826 0.00 0.00 37.20 3.41
2674 4105 4.497291 AGTACTAGAGAGGACCTGACTG 57.503 50.000 0.00 0.00 37.20 3.51
2675 4106 5.282946 ACTAGTACTAGAGAGGACCTGACT 58.717 45.833 31.93 6.02 37.20 3.41
2676 4107 5.619132 ACTAGTACTAGAGAGGACCTGAC 57.381 47.826 31.93 0.00 37.20 3.51
2677 4108 6.012683 ACAAACTAGTACTAGAGAGGACCTGA 60.013 42.308 31.93 0.00 37.20 3.86
2678 4109 6.181908 ACAAACTAGTACTAGAGAGGACCTG 58.818 44.000 31.93 18.20 37.20 4.00
2679 4110 6.391479 ACAAACTAGTACTAGAGAGGACCT 57.609 41.667 31.93 8.09 37.20 3.85
2680 4111 7.609532 TGTTACAAACTAGTACTAGAGAGGACC 59.390 40.741 31.93 16.29 37.20 4.46
2681 4112 8.558973 TGTTACAAACTAGTACTAGAGAGGAC 57.441 38.462 31.93 21.45 36.68 3.85
2682 4113 8.600668 TCTGTTACAAACTAGTACTAGAGAGGA 58.399 37.037 31.93 16.37 36.97 3.71
2683 4114 8.667463 GTCTGTTACAAACTAGTACTAGAGAGG 58.333 40.741 31.93 20.23 36.97 3.69
2684 4115 9.217278 TGTCTGTTACAAACTAGTACTAGAGAG 57.783 37.037 31.93 21.92 34.29 3.20
2685 4116 9.565090 TTGTCTGTTACAAACTAGTACTAGAGA 57.435 33.333 31.93 19.47 45.11 3.10
2700 4131 9.733556 ATATTAGAAACCACATTGTCTGTTACA 57.266 29.630 2.58 0.00 35.29 2.41
2718 4149 6.698380 GGCCTGTCCGATTTCTATATTAGAA 58.302 40.000 0.00 0.00 42.68 2.10
2719 4150 6.282199 GGCCTGTCCGATTTCTATATTAGA 57.718 41.667 0.00 0.00 0.00 2.10
2732 4163 7.955426 TTTATATAAATAAAGCGGCCTGTCCGA 60.955 37.037 0.00 0.00 44.55 4.55
2733 4164 6.148150 TTTATATAAATAAAGCGGCCTGTCCG 59.852 38.462 0.00 0.00 44.57 4.79
2734 4165 7.443259 TTTATATAAATAAAGCGGCCTGTCC 57.557 36.000 0.00 0.00 33.56 4.02
2815 4246 9.726438 AAGATAGAACTAGTTAACATTGCTTGT 57.274 29.630 8.42 0.00 41.53 3.16
2854 4286 5.104374 ACCATATTGACAACGGTAGTTACG 58.896 41.667 4.37 0.00 38.79 3.18
2861 4293 4.825085 ACAGAAAACCATATTGACAACGGT 59.175 37.500 0.00 0.00 0.00 4.83
2864 4296 8.816640 ATGAAACAGAAAACCATATTGACAAC 57.183 30.769 0.00 0.00 0.00 3.32
2971 4413 5.569355 ACATCTTGTTGTATGTGGGATTCA 58.431 37.500 0.00 0.00 35.06 2.57
2983 4425 6.238374 CGTTTGGAGTAGAAACATCTTGTTGT 60.238 38.462 0.00 0.00 40.14 3.32
2984 4426 6.136071 CGTTTGGAGTAGAAACATCTTGTTG 58.864 40.000 0.00 0.00 40.14 3.33
2985 4427 5.238650 CCGTTTGGAGTAGAAACATCTTGTT 59.761 40.000 0.00 0.00 39.06 2.83
2986 4428 4.755123 CCGTTTGGAGTAGAAACATCTTGT 59.245 41.667 0.00 0.00 37.49 3.16
2987 4429 4.755123 ACCGTTTGGAGTAGAAACATCTTG 59.245 41.667 0.00 0.00 39.21 3.02
2988 4430 4.755123 CACCGTTTGGAGTAGAAACATCTT 59.245 41.667 0.00 0.00 39.21 2.40
2989 4431 4.039973 TCACCGTTTGGAGTAGAAACATCT 59.960 41.667 0.00 0.00 39.21 2.90
2990 4432 4.312443 TCACCGTTTGGAGTAGAAACATC 58.688 43.478 0.00 0.00 39.21 3.06
2991 4433 4.345859 TCACCGTTTGGAGTAGAAACAT 57.654 40.909 0.00 0.00 39.21 2.71
2992 4434 3.823281 TCACCGTTTGGAGTAGAAACA 57.177 42.857 0.00 0.00 39.21 2.83
2993 4435 4.153655 GGATTCACCGTTTGGAGTAGAAAC 59.846 45.833 0.00 0.00 39.21 2.78
2994 4436 4.320870 GGATTCACCGTTTGGAGTAGAAA 58.679 43.478 0.00 0.00 39.21 2.52
2995 4437 3.307199 GGGATTCACCGTTTGGAGTAGAA 60.307 47.826 0.00 0.00 40.11 2.10
2996 4438 2.235402 GGGATTCACCGTTTGGAGTAGA 59.765 50.000 0.00 0.00 40.11 2.59
2997 4439 2.027561 TGGGATTCACCGTTTGGAGTAG 60.028 50.000 0.00 0.00 40.11 2.57
2998 4440 1.979308 TGGGATTCACCGTTTGGAGTA 59.021 47.619 0.00 0.00 40.11 2.59
2999 4441 0.768622 TGGGATTCACCGTTTGGAGT 59.231 50.000 0.00 0.00 40.11 3.85
3000 4442 1.165270 GTGGGATTCACCGTTTGGAG 58.835 55.000 0.00 0.00 40.39 3.86
3001 4443 0.474614 TGTGGGATTCACCGTTTGGA 59.525 50.000 0.00 0.00 45.48 3.53
3002 4444 1.544724 ATGTGGGATTCACCGTTTGG 58.455 50.000 0.00 0.00 45.48 3.28
3003 4445 3.078097 TGTATGTGGGATTCACCGTTTG 58.922 45.455 0.00 0.00 45.48 2.93
3004 4446 3.426787 TGTATGTGGGATTCACCGTTT 57.573 42.857 0.00 0.00 45.48 3.60
3005 4447 3.078837 GTTGTATGTGGGATTCACCGTT 58.921 45.455 0.00 0.00 45.48 4.44
3006 4448 2.039216 TGTTGTATGTGGGATTCACCGT 59.961 45.455 0.00 0.00 45.48 4.83
3007 4449 2.705730 TGTTGTATGTGGGATTCACCG 58.294 47.619 0.00 0.00 45.48 4.94
3008 4450 4.331968 TCTTGTTGTATGTGGGATTCACC 58.668 43.478 0.00 0.00 45.48 4.02
3009 4451 5.415701 ACATCTTGTTGTATGTGGGATTCAC 59.584 40.000 0.00 0.00 46.23 3.18
3010 4452 5.569355 ACATCTTGTTGTATGTGGGATTCA 58.431 37.500 0.00 0.00 35.06 2.57
3011 4453 6.515272 AACATCTTGTTGTATGTGGGATTC 57.485 37.500 0.00 0.00 39.45 2.52
3012 4454 6.721208 AGAAACATCTTGTTGTATGTGGGATT 59.279 34.615 0.00 0.00 40.14 3.01
3013 4455 6.151648 CAGAAACATCTTGTTGTATGTGGGAT 59.848 38.462 0.00 0.00 40.14 3.85
3014 4456 5.473162 CAGAAACATCTTGTTGTATGTGGGA 59.527 40.000 0.00 0.00 40.14 4.37
3015 4457 5.702865 CAGAAACATCTTGTTGTATGTGGG 58.297 41.667 0.00 0.00 40.14 4.61
3016 4458 5.048504 AGCAGAAACATCTTGTTGTATGTGG 60.049 40.000 0.00 0.00 40.14 4.17
3017 4459 6.005583 AGCAGAAACATCTTGTTGTATGTG 57.994 37.500 0.00 0.00 40.14 3.21
3018 4460 5.182001 GGAGCAGAAACATCTTGTTGTATGT 59.818 40.000 0.00 0.00 40.14 2.29
3019 4461 5.181811 TGGAGCAGAAACATCTTGTTGTATG 59.818 40.000 0.00 0.00 40.14 2.39
3020 4462 5.316167 TGGAGCAGAAACATCTTGTTGTAT 58.684 37.500 0.00 0.00 40.14 2.29
3021 4463 4.713553 TGGAGCAGAAACATCTTGTTGTA 58.286 39.130 0.00 0.00 40.14 2.41
3077 4519 0.518636 GTTTGCTCGCATCTGCTTCA 59.481 50.000 0.09 0.00 39.32 3.02
3171 4620 1.465689 CGGTAAGCTTTGTTGGATGCG 60.466 52.381 3.20 0.00 0.00 4.73
3189 4638 2.465860 TACTTGGACCAACACATCGG 57.534 50.000 1.69 0.00 0.00 4.18
3233 4682 5.668866 GCTGTATCTTGCTTAACGTTGAGTG 60.669 44.000 19.80 11.35 0.00 3.51
3241 4690 5.613358 ACTTGTGCTGTATCTTGCTTAAC 57.387 39.130 0.00 0.00 0.00 2.01
3324 4819 3.833070 ACTCCCTACAGTTGTTCCAGTAG 59.167 47.826 0.00 0.00 35.03 2.57
3337 4832 5.665360 TGATGTTTCCATATGACTCCCTACA 59.335 40.000 3.65 0.00 0.00 2.74
3444 4941 9.277783 GATGTATGCCAGATTGTAACTTCTATT 57.722 33.333 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.