Multiple sequence alignment - TraesCS3B01G061600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G061600 chr3B 100.000 2747 0 0 1 2747 33484378 33487124 0.000000e+00 5073
1 TraesCS3B01G061600 chr3B 95.014 1063 38 9 918 1968 33466238 33467297 0.000000e+00 1655
2 TraesCS3B01G061600 chr3B 97.358 492 11 2 1 491 33465621 33466111 0.000000e+00 835
3 TraesCS3B01G061600 chr3B 95.094 265 13 0 1968 2232 33467329 33467593 4.230000e-113 418
4 TraesCS3B01G061600 chr3B 96.257 187 6 1 2220 2405 33467616 33467802 3.440000e-79 305
5 TraesCS3B01G061600 chr3B 96.341 164 6 0 2582 2745 33467808 33467971 1.250000e-68 270
6 TraesCS3B01G061600 chr7A 90.262 1068 62 17 918 1968 64316488 64315446 0.000000e+00 1358
7 TraesCS3B01G061600 chr7A 88.468 555 34 18 2220 2744 64315120 64314566 0.000000e+00 643
8 TraesCS3B01G061600 chr7A 83.152 552 57 21 2217 2745 64200115 64200653 3.200000e-129 472
9 TraesCS3B01G061600 chr7A 93.916 263 16 0 1968 2230 64315407 64315145 5.510000e-107 398
10 TraesCS3B01G061600 chr7A 92.135 89 5 1 1833 1919 64199763 64199851 1.030000e-24 124
11 TraesCS3B01G061600 chr7D 84.824 850 117 3 999 1836 60078136 60077287 0.000000e+00 845
12 TraesCS3B01G061600 chr7B 82.104 827 131 7 982 1795 2480769 2479947 0.000000e+00 691
13 TraesCS3B01G061600 chr7B 82.630 806 90 32 1968 2745 2324338 2325121 0.000000e+00 667
14 TraesCS3B01G061600 chr7B 97.959 343 6 1 484 825 641147702 641148044 6.550000e-166 593
15 TraesCS3B01G061600 chr7B 84.762 525 50 18 2217 2713 1753650 1753128 1.470000e-137 499
16 TraesCS3B01G061600 chr7B 91.011 89 5 3 1833 1919 1754002 1753915 1.730000e-22 117
17 TraesCS3B01G061600 chr6A 98.529 340 4 1 489 827 472008193 472007854 1.410000e-167 599
18 TraesCS3B01G061600 chr4B 98.525 339 5 0 487 825 128541216 128540878 1.410000e-167 599
19 TraesCS3B01G061600 chr2B 98.521 338 5 0 488 825 575378443 575378106 5.060000e-167 597
20 TraesCS3B01G061600 chr5B 98.235 340 6 0 486 825 562221232 562221571 1.820000e-166 595
21 TraesCS3B01G061600 chr5B 98.521 338 4 1 492 829 595128820 595129156 1.820000e-166 595
22 TraesCS3B01G061600 chrUn 98.230 339 6 0 487 825 268571893 268572231 6.550000e-166 593
23 TraesCS3B01G061600 chrUn 97.414 348 6 3 489 836 8614473 8614817 8.470000e-165 590
24 TraesCS3B01G061600 chr2A 97.126 348 10 0 484 831 218142621 218142274 3.050000e-164 588


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G061600 chr3B 33484378 33487124 2746 False 5073.000000 5073 100.0000 1 2747 1 chr3B.!!$F1 2746
1 TraesCS3B01G061600 chr3B 33465621 33467971 2350 False 696.600000 1655 96.0128 1 2745 5 chr3B.!!$F2 2744
2 TraesCS3B01G061600 chr7A 64314566 64316488 1922 True 799.666667 1358 90.8820 918 2744 3 chr7A.!!$R1 1826
3 TraesCS3B01G061600 chr7A 64199763 64200653 890 False 298.000000 472 87.6435 1833 2745 2 chr7A.!!$F1 912
4 TraesCS3B01G061600 chr7D 60077287 60078136 849 True 845.000000 845 84.8240 999 1836 1 chr7D.!!$R1 837
5 TraesCS3B01G061600 chr7B 2479947 2480769 822 True 691.000000 691 82.1040 982 1795 1 chr7B.!!$R1 813
6 TraesCS3B01G061600 chr7B 2324338 2325121 783 False 667.000000 667 82.6300 1968 2745 1 chr7B.!!$F1 777
7 TraesCS3B01G061600 chr7B 1753128 1754002 874 True 308.000000 499 87.8865 1833 2713 2 chr7B.!!$R2 880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 637 0.039035 CCAAACCCTCCAATCCGGAA 59.961 55.0 9.01 0.0 45.75 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2462 2617 0.671781 GCAGCAGGACACGATTCAGT 60.672 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 176 0.600255 GTGATTGCGGCGCTAGGTAT 60.600 55.000 33.26 17.11 0.00 2.73
222 223 2.432628 CCAGCCCGACGACAACTC 60.433 66.667 0.00 0.00 0.00 3.01
418 419 7.695869 ACTACGTATTAAGCTGCTGTATTTC 57.304 36.000 1.35 0.00 0.00 2.17
429 430 7.408756 AGCTGCTGTATTTCAATCCATAAAA 57.591 32.000 0.00 0.00 0.00 1.52
478 479 2.675844 TGTGATTACTTCCGCGGATTTG 59.324 45.455 31.56 23.26 0.00 2.32
480 481 2.933906 TGATTACTTCCGCGGATTTGTC 59.066 45.455 31.56 22.07 0.00 3.18
498 499 1.575244 TCGCAAGACTATGAGCATGC 58.425 50.000 10.51 10.51 45.01 4.06
499 500 1.137675 TCGCAAGACTATGAGCATGCT 59.862 47.619 22.92 22.92 45.01 3.79
500 501 1.938577 CGCAAGACTATGAGCATGCTT 59.061 47.619 23.61 9.66 43.02 3.91
501 502 2.286242 CGCAAGACTATGAGCATGCTTG 60.286 50.000 23.61 14.30 43.02 4.01
502 503 2.033049 GCAAGACTATGAGCATGCTTGG 59.967 50.000 23.61 11.57 34.78 3.61
503 504 3.538591 CAAGACTATGAGCATGCTTGGA 58.461 45.455 23.61 9.60 31.60 3.53
504 505 4.135306 CAAGACTATGAGCATGCTTGGAT 58.865 43.478 23.61 16.11 31.60 3.41
505 506 5.303165 CAAGACTATGAGCATGCTTGGATA 58.697 41.667 23.61 16.36 31.60 2.59
506 507 4.892433 AGACTATGAGCATGCTTGGATAC 58.108 43.478 23.61 8.35 0.00 2.24
507 508 3.657634 ACTATGAGCATGCTTGGATACG 58.342 45.455 23.61 13.34 42.51 3.06
508 509 2.627515 ATGAGCATGCTTGGATACGT 57.372 45.000 23.61 6.17 42.51 3.57
509 510 2.401583 TGAGCATGCTTGGATACGTT 57.598 45.000 23.61 0.00 42.51 3.99
510 511 2.710377 TGAGCATGCTTGGATACGTTT 58.290 42.857 23.61 0.00 42.51 3.60
511 512 3.081061 TGAGCATGCTTGGATACGTTTT 58.919 40.909 23.61 0.00 42.51 2.43
512 513 4.257731 TGAGCATGCTTGGATACGTTTTA 58.742 39.130 23.61 0.00 42.51 1.52
513 514 4.332543 TGAGCATGCTTGGATACGTTTTAG 59.667 41.667 23.61 0.00 42.51 1.85
514 515 4.261801 AGCATGCTTGGATACGTTTTAGT 58.738 39.130 16.30 0.00 42.51 2.24
515 516 4.332819 AGCATGCTTGGATACGTTTTAGTC 59.667 41.667 16.30 0.00 42.51 2.59
516 517 4.495844 GCATGCTTGGATACGTTTTAGTCC 60.496 45.833 11.37 0.00 42.51 3.85
517 518 3.602483 TGCTTGGATACGTTTTAGTCCC 58.398 45.455 0.00 0.00 42.51 4.46
518 519 2.606272 GCTTGGATACGTTTTAGTCCCG 59.394 50.000 0.00 0.00 42.51 5.14
519 520 3.853475 CTTGGATACGTTTTAGTCCCGT 58.147 45.455 0.00 0.00 42.51 5.28
520 521 3.235157 TGGATACGTTTTAGTCCCGTG 57.765 47.619 0.00 0.00 42.51 4.94
521 522 2.824936 TGGATACGTTTTAGTCCCGTGA 59.175 45.455 0.00 0.00 42.51 4.35
522 523 3.182182 GGATACGTTTTAGTCCCGTGAC 58.818 50.000 0.00 0.00 42.09 3.67
524 525 6.323003 TGGATACGTTTTAGTCCCGTGACTA 61.323 44.000 3.43 3.43 45.97 2.59
534 535 3.582780 GTCCCGTGACTAAAAGTAGTGG 58.417 50.000 0.00 0.00 40.82 4.00
535 536 2.564062 TCCCGTGACTAAAAGTAGTGGG 59.436 50.000 2.70 2.70 40.82 4.61
536 537 2.564062 CCCGTGACTAAAAGTAGTGGGA 59.436 50.000 2.91 0.00 40.96 4.37
537 538 3.582780 CCGTGACTAAAAGTAGTGGGAC 58.417 50.000 0.00 0.00 40.82 4.46
538 539 3.257624 CCGTGACTAAAAGTAGTGGGACT 59.742 47.826 0.00 0.00 40.82 3.85
539 540 4.460382 CCGTGACTAAAAGTAGTGGGACTA 59.540 45.833 0.00 0.00 40.82 2.59
540 541 5.047802 CCGTGACTAAAAGTAGTGGGACTAA 60.048 44.000 0.00 0.00 40.82 2.24
541 542 6.449698 CGTGACTAAAAGTAGTGGGACTAAA 58.550 40.000 0.00 0.00 40.82 1.85
542 543 6.925165 CGTGACTAAAAGTAGTGGGACTAAAA 59.075 38.462 0.00 0.00 40.82 1.52
543 544 7.095899 CGTGACTAAAAGTAGTGGGACTAAAAC 60.096 40.741 0.00 0.00 40.82 2.43
544 545 7.930325 GTGACTAAAAGTAGTGGGACTAAAACT 59.070 37.037 0.00 0.00 40.82 2.66
545 546 8.488668 TGACTAAAAGTAGTGGGACTAAAACTT 58.511 33.333 0.00 0.00 40.82 2.66
546 547 8.672823 ACTAAAAGTAGTGGGACTAAAACTTG 57.327 34.615 0.00 0.00 39.20 3.16
547 548 6.387041 AAAAGTAGTGGGACTAAAACTTGC 57.613 37.500 0.00 0.00 31.62 4.01
548 549 4.976540 AGTAGTGGGACTAAAACTTGCT 57.023 40.909 0.00 0.00 31.62 3.91
549 550 6.429521 AAGTAGTGGGACTAAAACTTGCTA 57.570 37.500 0.00 0.00 31.62 3.49
550 551 6.038997 AGTAGTGGGACTAAAACTTGCTAG 57.961 41.667 0.00 0.00 31.62 3.42
551 552 4.976540 AGTGGGACTAAAACTTGCTAGT 57.023 40.909 0.00 0.00 35.68 2.57
552 553 4.895961 AGTGGGACTAAAACTTGCTAGTC 58.104 43.478 0.07 0.62 42.17 2.59
553 554 4.593634 AGTGGGACTAAAACTTGCTAGTCT 59.406 41.667 0.07 0.00 42.42 3.24
554 555 4.930405 GTGGGACTAAAACTTGCTAGTCTC 59.070 45.833 0.07 1.39 43.29 3.36
555 556 5.148651 GGGACTAAAACTTGCTAGTCTCA 57.851 43.478 0.07 0.00 42.76 3.27
556 557 4.930405 GGGACTAAAACTTGCTAGTCTCAC 59.070 45.833 0.07 0.00 42.76 3.51
557 558 4.930405 GGACTAAAACTTGCTAGTCTCACC 59.070 45.833 0.07 0.00 42.42 4.02
558 559 4.895961 ACTAAAACTTGCTAGTCTCACCC 58.104 43.478 0.07 0.00 31.99 4.61
559 560 3.857157 AAAACTTGCTAGTCTCACCCA 57.143 42.857 0.07 0.00 31.99 4.51
560 561 4.373156 AAAACTTGCTAGTCTCACCCAT 57.627 40.909 0.07 0.00 31.99 4.00
561 562 3.340814 AACTTGCTAGTCTCACCCATG 57.659 47.619 0.07 0.00 31.99 3.66
562 563 1.065854 ACTTGCTAGTCTCACCCATGC 60.066 52.381 0.00 0.00 0.00 4.06
563 564 1.209019 CTTGCTAGTCTCACCCATGCT 59.791 52.381 0.00 0.00 0.00 3.79
564 565 1.279496 TGCTAGTCTCACCCATGCTT 58.721 50.000 0.00 0.00 0.00 3.91
565 566 1.065926 TGCTAGTCTCACCCATGCTTG 60.066 52.381 0.00 0.00 0.00 4.01
566 567 1.745141 GCTAGTCTCACCCATGCTTGG 60.745 57.143 11.68 11.68 43.23 3.61
567 568 1.833630 CTAGTCTCACCCATGCTTGGA 59.166 52.381 19.85 0.00 46.92 3.53
568 569 1.293062 AGTCTCACCCATGCTTGGAT 58.707 50.000 19.85 0.00 46.92 3.41
569 570 1.211457 AGTCTCACCCATGCTTGGATC 59.789 52.381 19.85 3.99 46.92 3.36
570 571 0.548031 TCTCACCCATGCTTGGATCC 59.452 55.000 19.85 4.20 46.92 3.36
571 572 0.256752 CTCACCCATGCTTGGATCCA 59.743 55.000 19.85 11.44 46.92 3.41
572 573 0.703488 TCACCCATGCTTGGATCCAA 59.297 50.000 25.53 25.53 46.92 3.53
573 574 1.076841 TCACCCATGCTTGGATCCAAA 59.923 47.619 26.87 14.63 46.92 3.28
574 575 2.112998 CACCCATGCTTGGATCCAAAT 58.887 47.619 26.87 16.27 46.92 2.32
575 576 3.053019 TCACCCATGCTTGGATCCAAATA 60.053 43.478 26.87 18.63 46.92 1.40
576 577 3.068590 CACCCATGCTTGGATCCAAATAC 59.931 47.826 26.87 19.00 46.92 1.89
577 578 3.052642 ACCCATGCTTGGATCCAAATACT 60.053 43.478 26.87 10.16 46.92 2.12
578 579 4.167892 ACCCATGCTTGGATCCAAATACTA 59.832 41.667 26.87 12.31 46.92 1.82
579 580 5.139727 CCCATGCTTGGATCCAAATACTAA 58.860 41.667 26.87 10.11 46.92 2.24
580 581 5.598005 CCCATGCTTGGATCCAAATACTAAA 59.402 40.000 26.87 8.81 46.92 1.85
581 582 6.239120 CCCATGCTTGGATCCAAATACTAAAG 60.239 42.308 26.87 14.21 46.92 1.85
582 583 6.547141 CCATGCTTGGATCCAAATACTAAAGA 59.453 38.462 26.87 1.90 46.92 2.52
583 584 7.255381 CCATGCTTGGATCCAAATACTAAAGAG 60.255 40.741 26.87 12.80 46.92 2.85
584 585 6.957631 TGCTTGGATCCAAATACTAAAGAGA 58.042 36.000 26.87 1.15 35.33 3.10
585 586 6.823689 TGCTTGGATCCAAATACTAAAGAGAC 59.176 38.462 26.87 8.83 35.33 3.36
586 587 7.051000 GCTTGGATCCAAATACTAAAGAGACT 58.949 38.462 26.87 0.00 35.33 3.24
587 588 8.204836 GCTTGGATCCAAATACTAAAGAGACTA 58.795 37.037 26.87 0.00 35.33 2.59
620 621 9.866655 AGTTATTGAGCATTTATTATCCTCCAA 57.133 29.630 0.00 0.00 0.00 3.53
623 624 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
624 625 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
625 626 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
626 627 6.071320 AGCATTTATTATCCTCCAAACCCTC 58.929 40.000 0.00 0.00 0.00 4.30
627 628 5.243954 GCATTTATTATCCTCCAAACCCTCC 59.756 44.000 0.00 0.00 0.00 4.30
628 629 6.372931 CATTTATTATCCTCCAAACCCTCCA 58.627 40.000 0.00 0.00 0.00 3.86
629 630 6.410222 TTTATTATCCTCCAAACCCTCCAA 57.590 37.500 0.00 0.00 0.00 3.53
630 631 6.606241 TTATTATCCTCCAAACCCTCCAAT 57.394 37.500 0.00 0.00 0.00 3.16
631 632 4.519906 TTATCCTCCAAACCCTCCAATC 57.480 45.455 0.00 0.00 0.00 2.67
632 633 0.999712 TCCTCCAAACCCTCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
633 634 0.394352 CCTCCAAACCCTCCAATCCG 60.394 60.000 0.00 0.00 0.00 4.18
634 635 0.394352 CTCCAAACCCTCCAATCCGG 60.394 60.000 0.00 0.00 0.00 5.14
635 636 0.842905 TCCAAACCCTCCAATCCGGA 60.843 55.000 6.61 6.61 43.61 5.14
636 637 0.039035 CCAAACCCTCCAATCCGGAA 59.961 55.000 9.01 0.00 45.75 4.30
637 638 1.549037 CCAAACCCTCCAATCCGGAAA 60.549 52.381 9.01 0.00 45.75 3.13
638 639 2.456577 CAAACCCTCCAATCCGGAAAT 58.543 47.619 9.01 0.00 45.75 2.17
639 640 3.626222 CCAAACCCTCCAATCCGGAAATA 60.626 47.826 9.01 0.00 45.75 1.40
640 641 4.020543 CAAACCCTCCAATCCGGAAATAA 58.979 43.478 9.01 0.00 45.75 1.40
641 642 3.577805 ACCCTCCAATCCGGAAATAAG 57.422 47.619 9.01 4.14 45.75 1.73
642 643 2.174854 ACCCTCCAATCCGGAAATAAGG 59.825 50.000 9.01 13.55 45.75 2.69
643 644 2.441750 CCCTCCAATCCGGAAATAAGGA 59.558 50.000 21.56 16.61 45.75 3.36
644 645 3.117663 CCCTCCAATCCGGAAATAAGGAA 60.118 47.826 21.56 5.80 45.75 3.36
645 646 4.532834 CCTCCAATCCGGAAATAAGGAAA 58.467 43.478 9.01 0.00 45.75 3.13
646 647 4.580580 CCTCCAATCCGGAAATAAGGAAAG 59.419 45.833 9.01 2.69 45.75 2.62
647 648 4.532834 TCCAATCCGGAAATAAGGAAAGG 58.467 43.478 9.01 0.00 42.52 3.11
648 649 4.228666 TCCAATCCGGAAATAAGGAAAGGA 59.771 41.667 9.01 0.00 42.52 3.36
649 650 4.953579 CCAATCCGGAAATAAGGAAAGGAA 59.046 41.667 9.01 0.00 40.32 3.36
650 651 5.598417 CCAATCCGGAAATAAGGAAAGGAAT 59.402 40.000 9.01 0.00 40.32 3.01
651 652 6.098266 CCAATCCGGAAATAAGGAAAGGAATT 59.902 38.462 9.01 0.00 40.32 2.17
652 653 7.286775 CCAATCCGGAAATAAGGAAAGGAATTA 59.713 37.037 9.01 0.00 40.32 1.40
653 654 8.691797 CAATCCGGAAATAAGGAAAGGAATTAA 58.308 33.333 9.01 0.00 40.32 1.40
654 655 8.832458 ATCCGGAAATAAGGAAAGGAATTAAA 57.168 30.769 9.01 0.00 40.32 1.52
655 656 8.832458 TCCGGAAATAAGGAAAGGAATTAAAT 57.168 30.769 0.00 0.00 32.86 1.40
656 657 8.691797 TCCGGAAATAAGGAAAGGAATTAAATG 58.308 33.333 0.00 0.00 32.86 2.32
657 658 8.691797 CCGGAAATAAGGAAAGGAATTAAATGA 58.308 33.333 0.00 0.00 0.00 2.57
658 659 9.736023 CGGAAATAAGGAAAGGAATTAAATGAG 57.264 33.333 0.00 0.00 0.00 2.90
663 664 9.859152 ATAAGGAAAGGAATTAAATGAGGAGAG 57.141 33.333 0.00 0.00 0.00 3.20
664 665 7.516450 AGGAAAGGAATTAAATGAGGAGAGA 57.484 36.000 0.00 0.00 0.00 3.10
665 666 7.572814 AGGAAAGGAATTAAATGAGGAGAGAG 58.427 38.462 0.00 0.00 0.00 3.20
666 667 7.404396 AGGAAAGGAATTAAATGAGGAGAGAGA 59.596 37.037 0.00 0.00 0.00 3.10
667 668 7.714813 GGAAAGGAATTAAATGAGGAGAGAGAG 59.285 40.741 0.00 0.00 0.00 3.20
668 669 7.986553 AAGGAATTAAATGAGGAGAGAGAGA 57.013 36.000 0.00 0.00 0.00 3.10
669 670 7.601705 AGGAATTAAATGAGGAGAGAGAGAG 57.398 40.000 0.00 0.00 0.00 3.20
670 671 6.041979 AGGAATTAAATGAGGAGAGAGAGAGC 59.958 42.308 0.00 0.00 0.00 4.09
671 672 6.041979 GGAATTAAATGAGGAGAGAGAGAGCT 59.958 42.308 0.00 0.00 0.00 4.09
672 673 7.232534 GGAATTAAATGAGGAGAGAGAGAGCTA 59.767 40.741 0.00 0.00 0.00 3.32
673 674 8.546083 AATTAAATGAGGAGAGAGAGAGCTAA 57.454 34.615 0.00 0.00 0.00 3.09
674 675 8.725606 ATTAAATGAGGAGAGAGAGAGCTAAT 57.274 34.615 0.00 0.00 0.00 1.73
675 676 9.821240 ATTAAATGAGGAGAGAGAGAGCTAATA 57.179 33.333 0.00 0.00 0.00 0.98
676 677 7.524717 AAATGAGGAGAGAGAGAGCTAATAC 57.475 40.000 0.00 0.00 0.00 1.89
677 678 5.638530 TGAGGAGAGAGAGAGCTAATACA 57.361 43.478 0.00 0.00 0.00 2.29
678 679 6.199557 TGAGGAGAGAGAGAGCTAATACAT 57.800 41.667 0.00 0.00 0.00 2.29
679 680 7.323052 TGAGGAGAGAGAGAGCTAATACATA 57.677 40.000 0.00 0.00 0.00 2.29
680 681 7.927788 TGAGGAGAGAGAGAGCTAATACATAT 58.072 38.462 0.00 0.00 0.00 1.78
681 682 8.390143 TGAGGAGAGAGAGAGCTAATACATATT 58.610 37.037 0.00 0.00 0.00 1.28
682 683 9.243105 GAGGAGAGAGAGAGCTAATACATATTT 57.757 37.037 0.00 0.00 0.00 1.40
683 684 9.600432 AGGAGAGAGAGAGCTAATACATATTTT 57.400 33.333 0.00 0.00 0.00 1.82
700 701 8.747538 ACATATTTTAGTAGGTTTCCCATGAC 57.252 34.615 0.00 0.00 0.00 3.06
701 702 8.557450 ACATATTTTAGTAGGTTTCCCATGACT 58.443 33.333 0.00 0.00 0.00 3.41
705 706 9.816787 ATTTTAGTAGGTTTCCCATGACTAAAA 57.183 29.630 19.00 19.00 45.07 1.52
706 707 8.857694 TTTAGTAGGTTTCCCATGACTAAAAG 57.142 34.615 8.74 0.00 38.44 2.27
707 708 6.697641 AGTAGGTTTCCCATGACTAAAAGA 57.302 37.500 0.00 0.00 0.00 2.52
708 709 7.272144 AGTAGGTTTCCCATGACTAAAAGAT 57.728 36.000 0.00 0.00 0.00 2.40
709 710 7.699878 AGTAGGTTTCCCATGACTAAAAGATT 58.300 34.615 0.00 0.00 0.00 2.40
710 711 8.170730 AGTAGGTTTCCCATGACTAAAAGATTT 58.829 33.333 0.00 0.00 0.00 2.17
711 712 7.855784 AGGTTTCCCATGACTAAAAGATTTT 57.144 32.000 0.00 0.00 0.00 1.82
712 713 8.950007 AGGTTTCCCATGACTAAAAGATTTTA 57.050 30.769 0.00 0.00 0.00 1.52
726 727 9.660180 CTAAAAGATTTTAGCCTCAAGACTAGT 57.340 33.333 11.10 0.00 41.97 2.57
727 728 8.554835 AAAAGATTTTAGCCTCAAGACTAGTC 57.445 34.615 15.41 15.41 0.00 2.59
728 729 6.228616 AGATTTTAGCCTCAAGACTAGTCC 57.771 41.667 19.38 2.89 0.00 3.85
729 730 5.961421 AGATTTTAGCCTCAAGACTAGTCCT 59.039 40.000 19.38 10.36 0.00 3.85
730 731 7.126733 AGATTTTAGCCTCAAGACTAGTCCTA 58.873 38.462 19.38 9.39 0.00 2.94
731 732 6.777213 TTTTAGCCTCAAGACTAGTCCTAG 57.223 41.667 19.38 13.33 39.04 3.02
732 733 2.661718 AGCCTCAAGACTAGTCCTAGC 58.338 52.381 19.38 14.54 36.66 3.42
733 734 1.684450 GCCTCAAGACTAGTCCTAGCC 59.316 57.143 19.38 0.89 36.66 3.93
734 735 2.688515 GCCTCAAGACTAGTCCTAGCCT 60.689 54.545 19.38 0.00 36.66 4.58
735 736 3.219281 CCTCAAGACTAGTCCTAGCCTC 58.781 54.545 19.38 0.00 36.66 4.70
736 737 3.117663 CCTCAAGACTAGTCCTAGCCTCT 60.118 52.174 19.38 0.00 36.66 3.69
737 738 4.134563 CTCAAGACTAGTCCTAGCCTCTC 58.865 52.174 19.38 0.00 36.66 3.20
738 739 3.783642 TCAAGACTAGTCCTAGCCTCTCT 59.216 47.826 19.38 0.00 36.66 3.10
739 740 4.228666 TCAAGACTAGTCCTAGCCTCTCTT 59.771 45.833 19.38 0.17 36.66 2.85
740 741 4.873724 AGACTAGTCCTAGCCTCTCTTT 57.126 45.455 19.38 0.00 36.66 2.52
741 742 5.979656 AGACTAGTCCTAGCCTCTCTTTA 57.020 43.478 19.38 0.00 36.66 1.85
742 743 5.937111 AGACTAGTCCTAGCCTCTCTTTAG 58.063 45.833 19.38 0.00 36.66 1.85
743 744 5.430745 AGACTAGTCCTAGCCTCTCTTTAGT 59.569 44.000 19.38 0.00 36.66 2.24
744 745 5.687780 ACTAGTCCTAGCCTCTCTTTAGTC 58.312 45.833 1.22 0.00 36.66 2.59
745 746 4.594675 AGTCCTAGCCTCTCTTTAGTCA 57.405 45.455 0.00 0.00 0.00 3.41
746 747 4.532834 AGTCCTAGCCTCTCTTTAGTCAG 58.467 47.826 0.00 0.00 0.00 3.51
747 748 3.634910 GTCCTAGCCTCTCTTTAGTCAGG 59.365 52.174 0.00 0.00 0.00 3.86
748 749 2.962421 CCTAGCCTCTCTTTAGTCAGGG 59.038 54.545 0.00 0.00 0.00 4.45
749 750 1.872773 AGCCTCTCTTTAGTCAGGGG 58.127 55.000 0.00 0.00 0.00 4.79
750 751 1.079658 AGCCTCTCTTTAGTCAGGGGT 59.920 52.381 0.00 0.00 0.00 4.95
751 752 1.208293 GCCTCTCTTTAGTCAGGGGTG 59.792 57.143 0.00 0.00 0.00 4.61
752 753 1.208293 CCTCTCTTTAGTCAGGGGTGC 59.792 57.143 0.00 0.00 0.00 5.01
753 754 2.183679 CTCTCTTTAGTCAGGGGTGCT 58.816 52.381 0.00 0.00 0.00 4.40
754 755 2.569404 CTCTCTTTAGTCAGGGGTGCTT 59.431 50.000 0.00 0.00 0.00 3.91
755 756 2.303022 TCTCTTTAGTCAGGGGTGCTTG 59.697 50.000 0.00 0.00 0.00 4.01
756 757 1.351017 TCTTTAGTCAGGGGTGCTTGG 59.649 52.381 0.00 0.00 0.00 3.61
757 758 1.351017 CTTTAGTCAGGGGTGCTTGGA 59.649 52.381 0.00 0.00 0.00 3.53
758 759 1.440618 TTAGTCAGGGGTGCTTGGAA 58.559 50.000 0.00 0.00 0.00 3.53
759 760 0.690762 TAGTCAGGGGTGCTTGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
760 761 1.062488 AGTCAGGGGTGCTTGGAACT 61.062 55.000 0.00 0.00 0.00 3.01
761 762 0.178990 GTCAGGGGTGCTTGGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
762 763 0.555769 TCAGGGGTGCTTGGAACTTT 59.444 50.000 0.00 0.00 0.00 2.66
763 764 1.777878 TCAGGGGTGCTTGGAACTTTA 59.222 47.619 0.00 0.00 0.00 1.85
764 765 2.162681 CAGGGGTGCTTGGAACTTTAG 58.837 52.381 0.00 0.00 0.00 1.85
765 766 0.888619 GGGGTGCTTGGAACTTTAGC 59.111 55.000 0.00 0.00 35.50 3.09
766 767 0.888619 GGGTGCTTGGAACTTTAGCC 59.111 55.000 0.00 0.00 34.03 3.93
767 768 1.547901 GGGTGCTTGGAACTTTAGCCT 60.548 52.381 0.00 0.00 34.03 4.58
768 769 1.813178 GGTGCTTGGAACTTTAGCCTC 59.187 52.381 0.00 0.00 34.03 4.70
769 770 2.553247 GGTGCTTGGAACTTTAGCCTCT 60.553 50.000 0.00 0.00 34.03 3.69
770 771 3.307480 GGTGCTTGGAACTTTAGCCTCTA 60.307 47.826 0.00 0.00 34.03 2.43
771 772 4.324267 GTGCTTGGAACTTTAGCCTCTAA 58.676 43.478 0.00 0.00 34.03 2.10
772 773 4.760204 GTGCTTGGAACTTTAGCCTCTAAA 59.240 41.667 0.00 0.00 34.03 1.85
773 774 5.240844 GTGCTTGGAACTTTAGCCTCTAAAA 59.759 40.000 0.00 0.00 34.03 1.52
774 775 5.473504 TGCTTGGAACTTTAGCCTCTAAAAG 59.526 40.000 0.00 0.00 38.41 2.27
775 776 5.705905 GCTTGGAACTTTAGCCTCTAAAAGA 59.294 40.000 2.08 0.00 36.43 2.52
776 777 6.128145 GCTTGGAACTTTAGCCTCTAAAAGAG 60.128 42.308 2.08 0.00 41.96 2.85
777 778 6.681729 TGGAACTTTAGCCTCTAAAAGAGA 57.318 37.500 5.50 0.00 45.07 3.10
778 779 6.465084 TGGAACTTTAGCCTCTAAAAGAGAC 58.535 40.000 5.50 0.00 45.07 3.36
779 780 6.270231 TGGAACTTTAGCCTCTAAAAGAGACT 59.730 38.462 5.50 1.89 45.07 3.24
780 781 7.453752 TGGAACTTTAGCCTCTAAAAGAGACTA 59.546 37.037 5.50 0.91 45.07 2.59
781 782 8.479689 GGAACTTTAGCCTCTAAAAGAGACTAT 58.520 37.037 5.50 0.00 45.07 2.12
782 783 9.878667 GAACTTTAGCCTCTAAAAGAGACTATT 57.121 33.333 5.50 0.00 45.07 1.73
789 790 9.878667 AGCCTCTAAAAGAGACTATTTTTAGTC 57.121 33.333 12.70 5.24 45.07 2.59
790 791 9.654663 GCCTCTAAAAGAGACTATTTTTAGTCA 57.345 33.333 12.70 4.01 45.07 3.41
809 810 9.720769 TTTAGTCAGACTAAAAATAGTCCCTTG 57.279 33.333 26.93 5.29 44.84 3.61
810 811 7.317722 AGTCAGACTAAAAATAGTCCCTTGT 57.682 36.000 0.00 0.00 45.66 3.16
811 812 8.431910 AGTCAGACTAAAAATAGTCCCTTGTA 57.568 34.615 0.00 0.00 45.66 2.41
812 813 9.047947 AGTCAGACTAAAAATAGTCCCTTGTAT 57.952 33.333 0.00 0.00 45.66 2.29
813 814 9.315525 GTCAGACTAAAAATAGTCCCTTGTATC 57.684 37.037 11.35 0.00 45.66 2.24
814 815 8.483758 TCAGACTAAAAATAGTCCCTTGTATCC 58.516 37.037 11.35 0.00 45.66 2.59
815 816 8.265055 CAGACTAAAAATAGTCCCTTGTATCCA 58.735 37.037 11.35 0.00 45.66 3.41
816 817 8.832735 AGACTAAAAATAGTCCCTTGTATCCAA 58.167 33.333 11.35 0.00 45.66 3.53
817 818 9.110502 GACTAAAAATAGTCCCTTGTATCCAAG 57.889 37.037 4.96 0.00 40.86 3.61
818 819 6.775594 AAAAATAGTCCCTTGTATCCAAGC 57.224 37.500 0.00 0.00 45.57 4.01
819 820 5.450818 AAATAGTCCCTTGTATCCAAGCA 57.549 39.130 0.00 0.00 45.57 3.91
820 821 2.789409 AGTCCCTTGTATCCAAGCAC 57.211 50.000 0.00 0.00 45.57 4.40
821 822 1.282157 AGTCCCTTGTATCCAAGCACC 59.718 52.381 0.00 0.00 45.57 5.01
822 823 0.623723 TCCCTTGTATCCAAGCACCC 59.376 55.000 0.00 0.00 45.57 4.61
823 824 0.625849 CCCTTGTATCCAAGCACCCT 59.374 55.000 0.00 0.00 45.57 4.34
824 825 1.408822 CCCTTGTATCCAAGCACCCTC 60.409 57.143 0.00 0.00 45.57 4.30
825 826 1.281867 CCTTGTATCCAAGCACCCTCA 59.718 52.381 0.00 0.00 45.57 3.86
826 827 2.092212 CCTTGTATCCAAGCACCCTCAT 60.092 50.000 0.00 0.00 45.57 2.90
834 835 6.959606 ATCCAAGCACCCTCATTATATACT 57.040 37.500 0.00 0.00 0.00 2.12
839 840 7.819900 CCAAGCACCCTCATTATATACTTACTC 59.180 40.741 0.00 0.00 0.00 2.59
865 866 9.019764 CAACCAAAAGACAAGTGTACTAATTTG 57.980 33.333 0.00 0.00 0.00 2.32
888 889 5.935206 TGAGCGATGTTAATTAAACCAGACA 59.065 36.000 0.00 0.00 37.27 3.41
894 895 7.957484 CGATGTTAATTAAACCAGACAGTCTTG 59.043 37.037 0.00 0.00 37.27 3.02
939 977 7.552687 AGGTTCGATCTGCTGTGAAATTATTTA 59.447 33.333 0.00 0.00 0.00 1.40
973 1011 2.705730 TGCCCTTCAATCGATCGAAAA 58.294 42.857 23.50 15.12 0.00 2.29
987 1025 7.245419 TCGATCGAAAATTGCTGATATTTGA 57.755 32.000 16.99 0.00 0.00 2.69
997 1035 2.288729 GCTGATATTTGATGCGTGCAGA 59.711 45.455 0.00 0.00 0.00 4.26
1197 1236 3.267483 CGGTATTGACAAGGAATCCGTT 58.733 45.455 0.00 0.00 33.39 4.44
1253 1292 2.611292 GACCGATGCAAATCTTCCTGAG 59.389 50.000 0.00 0.00 0.00 3.35
1377 1416 2.683933 GCCCTCCTCCTTGACGGA 60.684 66.667 0.00 0.00 40.30 4.69
1490 1529 1.483827 CATCTCTGTCAGGCTGCCTAA 59.516 52.381 22.90 3.27 29.64 2.69
1554 1593 3.914966 CAGATACCGTCGACATATTCAGC 59.085 47.826 17.16 1.46 0.00 4.26
1634 1673 4.528674 CCAGCTGAAGGATGGTCG 57.471 61.111 17.39 0.00 45.66 4.79
1720 1776 1.112315 AAATTGCCCTGGTTGTGCGA 61.112 50.000 0.00 0.00 0.00 5.10
1756 1812 7.135467 GGAAGAAGTTGACTGAAGCTTAAAAG 58.865 38.462 0.00 0.00 0.00 2.27
1801 1857 1.953686 GAGGCGTTCTCATCTCTAGCT 59.046 52.381 0.00 0.00 42.02 3.32
1813 1869 6.887002 TCTCATCTCTAGCTGTGAAGAGTAAA 59.113 38.462 10.35 0.00 40.17 2.01
1824 1880 7.171678 AGCTGTGAAGAGTAAATTGTTGAGTAC 59.828 37.037 0.00 0.00 0.00 2.73
1826 1882 7.506114 TGTGAAGAGTAAATTGTTGAGTACCT 58.494 34.615 0.00 0.00 0.00 3.08
1957 2019 6.096987 AGACACTGTCCAATATAGTACTGTGG 59.903 42.308 5.39 7.90 42.58 4.17
1982 2085 3.061161 GCTGTTTTGCTCTTGTGTGTTTG 59.939 43.478 0.00 0.00 0.00 2.93
2023 2126 6.411376 TGTGGTAATGTACTTGGACCATTAG 58.589 40.000 15.05 0.00 41.98 1.73
2025 2128 5.433526 GGTAATGTACTTGGACCATTAGCA 58.566 41.667 13.08 0.00 43.67 3.49
2083 2186 1.538047 TAAGCAAGCCAAGGAAGCTG 58.462 50.000 0.00 0.00 40.49 4.24
2123 2226 1.272807 AGCAGGCCAAATTTCAGCAT 58.727 45.000 5.01 2.17 0.00 3.79
2124 2227 1.066430 AGCAGGCCAAATTTCAGCATG 60.066 47.619 16.25 16.25 41.02 4.06
2305 2451 1.986575 GCGAGACAGAAAGGGCATGC 61.987 60.000 9.90 9.90 0.00 4.06
2434 2589 4.302067 AGAAAGGATCTGAAGCATAGGGA 58.698 43.478 0.00 0.00 36.88 4.20
2438 2593 4.302067 AGGATCTGAAGCATAGGGAGAAA 58.698 43.478 0.00 0.00 0.00 2.52
2439 2594 4.347583 AGGATCTGAAGCATAGGGAGAAAG 59.652 45.833 0.00 0.00 0.00 2.62
2442 2597 4.104086 TCTGAAGCATAGGGAGAAAGGAA 58.896 43.478 0.00 0.00 0.00 3.36
2443 2598 4.080863 TCTGAAGCATAGGGAGAAAGGAAC 60.081 45.833 0.00 0.00 0.00 3.62
2445 2600 3.922171 AGCATAGGGAGAAAGGAACTG 57.078 47.619 0.00 0.00 40.86 3.16
2446 2601 3.454858 AGCATAGGGAGAAAGGAACTGA 58.545 45.455 0.00 0.00 40.86 3.41
2447 2602 3.846588 AGCATAGGGAGAAAGGAACTGAA 59.153 43.478 0.00 0.00 40.86 3.02
2449 2604 2.869101 AGGGAGAAAGGAACTGAAGC 57.131 50.000 0.00 0.00 40.86 3.86
2451 2606 2.646798 AGGGAGAAAGGAACTGAAGCAT 59.353 45.455 0.00 0.00 40.86 3.79
2452 2607 3.846588 AGGGAGAAAGGAACTGAAGCATA 59.153 43.478 0.00 0.00 40.86 3.14
2453 2608 4.080638 AGGGAGAAAGGAACTGAAGCATAG 60.081 45.833 0.00 0.00 40.86 2.23
2454 2609 4.195416 GGAGAAAGGAACTGAAGCATAGG 58.805 47.826 0.00 0.00 40.86 2.57
2455 2610 4.195416 GAGAAAGGAACTGAAGCATAGGG 58.805 47.826 0.00 0.00 40.86 3.53
2456 2611 3.846588 AGAAAGGAACTGAAGCATAGGGA 59.153 43.478 0.00 0.00 40.86 4.20
2458 2613 3.121929 AGGAACTGAAGCATAGGGAGA 57.878 47.619 0.00 0.00 37.18 3.71
2459 2614 3.454858 AGGAACTGAAGCATAGGGAGAA 58.545 45.455 0.00 0.00 37.18 2.87
2462 2617 4.080863 GGAACTGAAGCATAGGGAGAAAGA 60.081 45.833 0.00 0.00 0.00 2.52
2470 2648 4.054671 GCATAGGGAGAAAGACTGAATCG 58.945 47.826 0.00 0.00 0.00 3.34
2504 2682 3.890926 GCCATACTCCCCCAGGGC 61.891 72.222 0.00 0.00 43.94 5.19
2592 2773 2.428890 CTGGATCTTAGCCTCGACACTT 59.571 50.000 0.00 0.00 0.00 3.16
2672 2853 9.614792 TTTAACTAAGATTAGCATCTTCCTTCC 57.385 33.333 2.73 0.00 45.26 3.46
2727 2908 5.503819 TCATCCTCAATGCCGTAATCAACG 61.504 45.833 0.00 0.00 41.63 4.10
2745 2926 4.221924 TCAACGACAGTTAATCCATCCTCA 59.778 41.667 0.00 0.00 38.79 3.86
2746 2927 4.819105 ACGACAGTTAATCCATCCTCAA 57.181 40.909 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 0.458025 CGCCCCTGTACTCTTCGTTC 60.458 60.000 0.00 0.00 0.00 3.95
69 70 1.183676 ACGCCCCTGTACTCTTCGTT 61.184 55.000 0.00 0.00 0.00 3.85
175 176 2.037251 GCAGGAGATGCGAGGGTAATTA 59.963 50.000 0.00 0.00 46.99 1.40
222 223 0.094730 GGAATTGAAGGAACGCGTCG 59.905 55.000 14.44 0.00 0.00 5.12
335 336 3.519579 GTCCTAGATCGATGCATCATGG 58.480 50.000 25.70 16.14 0.00 3.66
343 344 6.904498 AGAGATAAAACGTCCTAGATCGATG 58.096 40.000 0.54 0.00 0.00 3.84
418 419 3.100817 CGCTTGACGCTTTTATGGATTG 58.899 45.455 0.00 0.00 36.13 2.67
478 479 1.260033 GCATGCTCATAGTCTTGCGAC 59.740 52.381 11.37 0.00 40.54 5.19
480 481 1.579698 AGCATGCTCATAGTCTTGCG 58.420 50.000 16.30 0.00 38.09 4.85
490 491 2.401583 AACGTATCCAAGCATGCTCA 57.598 45.000 22.93 8.62 0.00 4.26
491 492 3.764885 AAAACGTATCCAAGCATGCTC 57.235 42.857 22.93 6.18 0.00 4.26
492 493 4.261801 ACTAAAACGTATCCAAGCATGCT 58.738 39.130 16.30 16.30 0.00 3.79
493 494 4.495844 GGACTAAAACGTATCCAAGCATGC 60.496 45.833 10.51 10.51 0.00 4.06
494 495 4.035208 GGGACTAAAACGTATCCAAGCATG 59.965 45.833 0.00 0.00 32.45 4.06
495 496 4.196971 GGGACTAAAACGTATCCAAGCAT 58.803 43.478 0.00 0.00 32.45 3.79
496 497 3.602483 GGGACTAAAACGTATCCAAGCA 58.398 45.455 0.00 0.00 32.45 3.91
497 498 2.606272 CGGGACTAAAACGTATCCAAGC 59.394 50.000 0.00 0.00 32.45 4.01
498 499 3.615496 CACGGGACTAAAACGTATCCAAG 59.385 47.826 0.00 0.00 39.02 3.61
499 500 3.257873 TCACGGGACTAAAACGTATCCAA 59.742 43.478 0.00 0.00 39.02 3.53
500 501 2.824936 TCACGGGACTAAAACGTATCCA 59.175 45.455 0.00 0.00 39.02 3.41
501 502 3.182182 GTCACGGGACTAAAACGTATCC 58.818 50.000 11.49 0.00 40.99 2.59
513 514 3.582780 CCACTACTTTTAGTCACGGGAC 58.417 50.000 10.64 10.64 44.66 4.46
514 515 2.564062 CCCACTACTTTTAGTCACGGGA 59.436 50.000 0.00 0.00 39.78 5.14
515 516 2.564062 TCCCACTACTTTTAGTCACGGG 59.436 50.000 0.00 0.00 39.17 5.28
516 517 3.257624 AGTCCCACTACTTTTAGTCACGG 59.742 47.826 0.00 0.00 36.31 4.94
517 518 4.516365 AGTCCCACTACTTTTAGTCACG 57.484 45.455 0.00 0.00 36.31 4.35
518 519 7.930325 AGTTTTAGTCCCACTACTTTTAGTCAC 59.070 37.037 0.00 0.00 36.31 3.67
519 520 8.026396 AGTTTTAGTCCCACTACTTTTAGTCA 57.974 34.615 0.00 0.00 36.31 3.41
520 521 8.771766 CAAGTTTTAGTCCCACTACTTTTAGTC 58.228 37.037 0.00 0.00 36.31 2.59
521 522 7.228108 GCAAGTTTTAGTCCCACTACTTTTAGT 59.772 37.037 0.00 0.00 39.30 2.24
522 523 7.444487 AGCAAGTTTTAGTCCCACTACTTTTAG 59.556 37.037 0.00 0.00 28.93 1.85
523 524 7.284820 AGCAAGTTTTAGTCCCACTACTTTTA 58.715 34.615 0.00 0.00 28.93 1.52
524 525 6.127101 AGCAAGTTTTAGTCCCACTACTTTT 58.873 36.000 0.00 0.00 28.93 2.27
525 526 5.691896 AGCAAGTTTTAGTCCCACTACTTT 58.308 37.500 0.00 0.00 28.93 2.66
526 527 5.306114 AGCAAGTTTTAGTCCCACTACTT 57.694 39.130 0.00 0.00 28.93 2.24
527 528 4.976540 AGCAAGTTTTAGTCCCACTACT 57.023 40.909 0.00 0.00 28.93 2.57
528 529 5.791666 ACTAGCAAGTTTTAGTCCCACTAC 58.208 41.667 0.00 0.00 27.15 2.73
529 530 5.778750 AGACTAGCAAGTTTTAGTCCCACTA 59.221 40.000 15.72 0.00 44.32 2.74
530 531 4.593634 AGACTAGCAAGTTTTAGTCCCACT 59.406 41.667 15.72 1.62 44.32 4.00
531 532 4.895961 AGACTAGCAAGTTTTAGTCCCAC 58.104 43.478 15.72 0.00 44.32 4.61
532 533 4.591498 TGAGACTAGCAAGTTTTAGTCCCA 59.409 41.667 15.72 10.61 44.32 4.37
533 534 4.930405 GTGAGACTAGCAAGTTTTAGTCCC 59.070 45.833 15.72 8.76 44.32 4.46
534 535 4.930405 GGTGAGACTAGCAAGTTTTAGTCC 59.070 45.833 15.72 10.59 44.32 3.85
535 536 4.930405 GGGTGAGACTAGCAAGTTTTAGTC 59.070 45.833 13.08 13.08 43.83 2.59
536 537 4.347000 TGGGTGAGACTAGCAAGTTTTAGT 59.653 41.667 0.00 0.00 35.56 2.24
537 538 4.894784 TGGGTGAGACTAGCAAGTTTTAG 58.105 43.478 0.00 0.00 35.56 1.85
538 539 4.967084 TGGGTGAGACTAGCAAGTTTTA 57.033 40.909 0.00 0.00 35.56 1.52
539 540 3.857157 TGGGTGAGACTAGCAAGTTTT 57.143 42.857 0.00 0.00 35.56 2.43
540 541 3.679389 CATGGGTGAGACTAGCAAGTTT 58.321 45.455 0.00 0.00 35.56 2.66
541 542 2.616510 GCATGGGTGAGACTAGCAAGTT 60.617 50.000 0.00 0.00 35.56 2.66
542 543 1.065854 GCATGGGTGAGACTAGCAAGT 60.066 52.381 0.00 0.00 39.21 3.16
543 544 1.209019 AGCATGGGTGAGACTAGCAAG 59.791 52.381 0.00 0.00 0.00 4.01
544 545 1.279496 AGCATGGGTGAGACTAGCAA 58.721 50.000 0.00 0.00 0.00 3.91
545 546 1.065926 CAAGCATGGGTGAGACTAGCA 60.066 52.381 0.00 0.00 0.00 3.49
546 547 1.661341 CAAGCATGGGTGAGACTAGC 58.339 55.000 0.00 0.00 0.00 3.42
547 548 2.322355 CCAAGCATGGGTGAGACTAG 57.678 55.000 0.00 0.00 43.51 2.57
558 559 7.500227 TCTCTTTAGTATTTGGATCCAAGCATG 59.500 37.037 25.69 12.43 37.24 4.06
559 560 7.500559 GTCTCTTTAGTATTTGGATCCAAGCAT 59.499 37.037 25.69 19.69 37.24 3.79
560 561 6.823689 GTCTCTTTAGTATTTGGATCCAAGCA 59.176 38.462 25.69 14.00 37.24 3.91
561 562 7.051000 AGTCTCTTTAGTATTTGGATCCAAGC 58.949 38.462 25.69 19.18 37.24 4.01
594 595 9.866655 TTGGAGGATAATAAATGCTCAATAACT 57.133 29.630 8.48 0.00 38.10 2.24
597 598 9.077885 GGTTTGGAGGATAATAAATGCTCAATA 57.922 33.333 8.48 0.00 38.10 1.90
598 599 7.015584 GGGTTTGGAGGATAATAAATGCTCAAT 59.984 37.037 8.48 0.00 38.10 2.57
599 600 6.323739 GGGTTTGGAGGATAATAAATGCTCAA 59.676 38.462 8.48 0.00 38.10 3.02
600 601 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
601 602 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
602 603 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
603 604 5.243954 GGAGGGTTTGGAGGATAATAAATGC 59.756 44.000 0.00 0.00 0.00 3.56
604 605 6.372931 TGGAGGGTTTGGAGGATAATAAATG 58.627 40.000 0.00 0.00 0.00 2.32
605 606 6.606241 TGGAGGGTTTGGAGGATAATAAAT 57.394 37.500 0.00 0.00 0.00 1.40
606 607 6.410222 TTGGAGGGTTTGGAGGATAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
607 608 6.411554 GGATTGGAGGGTTTGGAGGATAATAA 60.412 42.308 0.00 0.00 0.00 1.40
608 609 5.074515 GGATTGGAGGGTTTGGAGGATAATA 59.925 44.000 0.00 0.00 0.00 0.98
609 610 4.140924 GGATTGGAGGGTTTGGAGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
610 611 3.204382 GGATTGGAGGGTTTGGAGGATAA 59.796 47.826 0.00 0.00 0.00 1.75
611 612 2.783510 GGATTGGAGGGTTTGGAGGATA 59.216 50.000 0.00 0.00 0.00 2.59
612 613 1.570979 GGATTGGAGGGTTTGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
613 614 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
614 615 0.394352 CGGATTGGAGGGTTTGGAGG 60.394 60.000 0.00 0.00 0.00 4.30
615 616 0.394352 CCGGATTGGAGGGTTTGGAG 60.394 60.000 0.00 0.00 42.00 3.86
616 617 0.842905 TCCGGATTGGAGGGTTTGGA 60.843 55.000 0.00 0.00 43.74 3.53
617 618 1.688811 TCCGGATTGGAGGGTTTGG 59.311 57.895 0.00 0.00 43.74 3.28
626 627 4.532834 TCCTTTCCTTATTTCCGGATTGG 58.467 43.478 4.15 3.59 40.09 3.16
627 628 6.715347 ATTCCTTTCCTTATTTCCGGATTG 57.285 37.500 4.15 0.00 0.00 2.67
628 629 8.832458 TTAATTCCTTTCCTTATTTCCGGATT 57.168 30.769 4.15 0.00 0.00 3.01
629 630 8.832458 TTTAATTCCTTTCCTTATTTCCGGAT 57.168 30.769 4.15 0.00 0.00 4.18
630 631 8.691797 CATTTAATTCCTTTCCTTATTTCCGGA 58.308 33.333 0.00 0.00 0.00 5.14
631 632 8.691797 TCATTTAATTCCTTTCCTTATTTCCGG 58.308 33.333 0.00 0.00 0.00 5.14
632 633 9.736023 CTCATTTAATTCCTTTCCTTATTTCCG 57.264 33.333 0.00 0.00 0.00 4.30
637 638 9.859152 CTCTCCTCATTTAATTCCTTTCCTTAT 57.141 33.333 0.00 0.00 0.00 1.73
638 639 9.057911 TCTCTCCTCATTTAATTCCTTTCCTTA 57.942 33.333 0.00 0.00 0.00 2.69
639 640 7.933223 TCTCTCCTCATTTAATTCCTTTCCTT 58.067 34.615 0.00 0.00 0.00 3.36
640 641 7.404396 TCTCTCTCCTCATTTAATTCCTTTCCT 59.596 37.037 0.00 0.00 0.00 3.36
641 642 7.569240 TCTCTCTCCTCATTTAATTCCTTTCC 58.431 38.462 0.00 0.00 0.00 3.13
642 643 8.482128 TCTCTCTCTCCTCATTTAATTCCTTTC 58.518 37.037 0.00 0.00 0.00 2.62
643 644 8.386012 TCTCTCTCTCCTCATTTAATTCCTTT 57.614 34.615 0.00 0.00 0.00 3.11
644 645 7.418942 GCTCTCTCTCTCCTCATTTAATTCCTT 60.419 40.741 0.00 0.00 0.00 3.36
645 646 6.041979 GCTCTCTCTCTCCTCATTTAATTCCT 59.958 42.308 0.00 0.00 0.00 3.36
646 647 6.041979 AGCTCTCTCTCTCCTCATTTAATTCC 59.958 42.308 0.00 0.00 0.00 3.01
647 648 7.054491 AGCTCTCTCTCTCCTCATTTAATTC 57.946 40.000 0.00 0.00 0.00 2.17
648 649 8.546083 TTAGCTCTCTCTCTCCTCATTTAATT 57.454 34.615 0.00 0.00 0.00 1.40
649 650 8.725606 ATTAGCTCTCTCTCTCCTCATTTAAT 57.274 34.615 0.00 0.00 0.00 1.40
650 651 9.073475 GTATTAGCTCTCTCTCTCCTCATTTAA 57.927 37.037 0.00 0.00 0.00 1.52
651 652 8.221251 TGTATTAGCTCTCTCTCTCCTCATTTA 58.779 37.037 0.00 0.00 0.00 1.40
652 653 7.066142 TGTATTAGCTCTCTCTCTCCTCATTT 58.934 38.462 0.00 0.00 0.00 2.32
653 654 6.609876 TGTATTAGCTCTCTCTCTCCTCATT 58.390 40.000 0.00 0.00 0.00 2.57
654 655 6.199557 TGTATTAGCTCTCTCTCTCCTCAT 57.800 41.667 0.00 0.00 0.00 2.90
655 656 5.638530 TGTATTAGCTCTCTCTCTCCTCA 57.361 43.478 0.00 0.00 0.00 3.86
656 657 8.807948 AATATGTATTAGCTCTCTCTCTCCTC 57.192 38.462 0.00 0.00 0.00 3.71
657 658 9.600432 AAAATATGTATTAGCTCTCTCTCTCCT 57.400 33.333 0.00 0.00 0.00 3.69
687 688 9.025041 CTAAAATCTTTTAGTCATGGGAAACCT 57.975 33.333 12.31 0.00 45.91 3.50
701 702 9.654663 GACTAGTCTTGAGGCTAAAATCTTTTA 57.345 33.333 15.91 0.00 0.00 1.52
702 703 7.608376 GGACTAGTCTTGAGGCTAAAATCTTTT 59.392 37.037 21.88 0.00 0.00 2.27
703 704 7.037945 AGGACTAGTCTTGAGGCTAAAATCTTT 60.038 37.037 21.88 0.00 0.00 2.52
704 705 6.442244 AGGACTAGTCTTGAGGCTAAAATCTT 59.558 38.462 21.88 0.00 0.00 2.40
705 706 5.961421 AGGACTAGTCTTGAGGCTAAAATCT 59.039 40.000 21.88 3.06 0.00 2.40
706 707 6.228616 AGGACTAGTCTTGAGGCTAAAATC 57.771 41.667 21.88 0.73 0.00 2.17
707 708 6.183360 GCTAGGACTAGTCTTGAGGCTAAAAT 60.183 42.308 21.88 0.00 35.65 1.82
708 709 5.127356 GCTAGGACTAGTCTTGAGGCTAAAA 59.873 44.000 21.88 0.00 35.65 1.52
709 710 4.645588 GCTAGGACTAGTCTTGAGGCTAAA 59.354 45.833 21.88 0.00 35.65 1.85
710 711 4.208746 GCTAGGACTAGTCTTGAGGCTAA 58.791 47.826 21.88 0.00 35.65 3.09
711 712 3.435313 GGCTAGGACTAGTCTTGAGGCTA 60.435 52.174 24.87 16.06 35.06 3.93
712 713 2.661718 GCTAGGACTAGTCTTGAGGCT 58.338 52.381 21.88 11.79 35.65 4.58
713 714 1.684450 GGCTAGGACTAGTCTTGAGGC 59.316 57.143 21.88 21.38 35.06 4.70
714 715 3.306472 AGGCTAGGACTAGTCTTGAGG 57.694 52.381 21.88 10.56 45.03 3.86
720 721 5.687780 ACTAAAGAGAGGCTAGGACTAGTC 58.312 45.833 14.87 14.87 38.03 2.59
721 722 5.192121 TGACTAAAGAGAGGCTAGGACTAGT 59.808 44.000 0.00 0.00 35.65 2.57
722 723 5.686753 TGACTAAAGAGAGGCTAGGACTAG 58.313 45.833 1.98 1.98 36.29 2.57
723 724 5.398126 CCTGACTAAAGAGAGGCTAGGACTA 60.398 48.000 0.00 0.00 29.08 2.59
724 725 4.532834 CTGACTAAAGAGAGGCTAGGACT 58.467 47.826 0.00 0.00 0.00 3.85
725 726 3.634910 CCTGACTAAAGAGAGGCTAGGAC 59.365 52.174 0.00 0.00 29.08 3.85
726 727 3.373220 CCCTGACTAAAGAGAGGCTAGGA 60.373 52.174 0.00 0.00 29.08 2.94
727 728 2.962421 CCCTGACTAAAGAGAGGCTAGG 59.038 54.545 0.00 0.00 0.00 3.02
728 729 2.962421 CCCCTGACTAAAGAGAGGCTAG 59.038 54.545 0.00 0.00 0.00 3.42
729 730 2.315155 ACCCCTGACTAAAGAGAGGCTA 59.685 50.000 0.00 0.00 0.00 3.93
730 731 1.079658 ACCCCTGACTAAAGAGAGGCT 59.920 52.381 0.00 0.00 0.00 4.58
731 732 1.208293 CACCCCTGACTAAAGAGAGGC 59.792 57.143 0.00 0.00 0.00 4.70
732 733 1.208293 GCACCCCTGACTAAAGAGAGG 59.792 57.143 0.00 0.00 0.00 3.69
733 734 2.183679 AGCACCCCTGACTAAAGAGAG 58.816 52.381 0.00 0.00 0.00 3.20
734 735 2.303022 CAAGCACCCCTGACTAAAGAGA 59.697 50.000 0.00 0.00 0.00 3.10
735 736 2.616510 CCAAGCACCCCTGACTAAAGAG 60.617 54.545 0.00 0.00 0.00 2.85
736 737 1.351017 CCAAGCACCCCTGACTAAAGA 59.649 52.381 0.00 0.00 0.00 2.52
737 738 1.351017 TCCAAGCACCCCTGACTAAAG 59.649 52.381 0.00 0.00 0.00 1.85
738 739 1.440618 TCCAAGCACCCCTGACTAAA 58.559 50.000 0.00 0.00 0.00 1.85
739 740 1.073284 GTTCCAAGCACCCCTGACTAA 59.927 52.381 0.00 0.00 0.00 2.24
740 741 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.000 0.00 0.00 0.00 2.59
741 742 1.062488 AGTTCCAAGCACCCCTGACT 61.062 55.000 0.00 0.00 0.00 3.41
742 743 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.000 0.00 0.00 0.00 3.51
743 744 0.555769 AAAGTTCCAAGCACCCCTGA 59.444 50.000 0.00 0.00 0.00 3.86
744 745 2.162681 CTAAAGTTCCAAGCACCCCTG 58.837 52.381 0.00 0.00 0.00 4.45
745 746 1.547901 GCTAAAGTTCCAAGCACCCCT 60.548 52.381 0.00 0.00 36.26 4.79
746 747 0.888619 GCTAAAGTTCCAAGCACCCC 59.111 55.000 0.00 0.00 36.26 4.95
747 748 0.888619 GGCTAAAGTTCCAAGCACCC 59.111 55.000 7.02 0.00 38.01 4.61
748 749 1.813178 GAGGCTAAAGTTCCAAGCACC 59.187 52.381 0.00 0.00 38.01 5.01
749 750 2.784347 AGAGGCTAAAGTTCCAAGCAC 58.216 47.619 0.00 2.09 38.01 4.40
750 751 4.634012 TTAGAGGCTAAAGTTCCAAGCA 57.366 40.909 0.00 0.00 38.01 3.91
751 752 5.705905 TCTTTTAGAGGCTAAAGTTCCAAGC 59.294 40.000 7.84 0.00 33.97 4.01
752 753 7.118535 GTCTCTTTTAGAGGCTAAAGTTCCAAG 59.881 40.741 7.84 0.00 43.38 3.61
753 754 6.935208 GTCTCTTTTAGAGGCTAAAGTTCCAA 59.065 38.462 7.84 0.00 43.38 3.53
754 755 6.465084 GTCTCTTTTAGAGGCTAAAGTTCCA 58.535 40.000 7.84 0.00 43.38 3.53
755 756 6.971527 GTCTCTTTTAGAGGCTAAAGTTCC 57.028 41.667 7.84 0.00 43.38 3.62
764 765 9.654663 TGACTAAAAATAGTCTCTTTTAGAGGC 57.345 33.333 22.30 14.20 46.94 4.70
783 784 9.720769 CAAGGGACTATTTTTAGTCTGACTAAA 57.279 33.333 29.65 29.65 42.90 1.85
784 785 8.877195 ACAAGGGACTATTTTTAGTCTGACTAA 58.123 33.333 22.80 22.80 44.35 2.24
785 786 8.431910 ACAAGGGACTATTTTTAGTCTGACTA 57.568 34.615 13.34 13.34 44.35 2.59
786 787 7.317722 ACAAGGGACTATTTTTAGTCTGACT 57.682 36.000 15.57 15.57 44.35 3.41
787 788 9.315525 GATACAAGGGACTATTTTTAGTCTGAC 57.684 37.037 11.69 0.00 44.35 3.51
788 789 8.483758 GGATACAAGGGACTATTTTTAGTCTGA 58.516 37.037 11.69 0.00 44.35 3.27
789 790 8.664211 GGATACAAGGGACTATTTTTAGTCTG 57.336 38.462 11.69 6.32 44.35 3.51
809 810 7.852263 AGTATATAATGAGGGTGCTTGGATAC 58.148 38.462 0.00 0.00 0.00 2.24
810 811 8.449423 AAGTATATAATGAGGGTGCTTGGATA 57.551 34.615 0.00 0.00 0.00 2.59
811 812 6.959606 AGTATATAATGAGGGTGCTTGGAT 57.040 37.500 0.00 0.00 0.00 3.41
812 813 6.763715 AAGTATATAATGAGGGTGCTTGGA 57.236 37.500 0.00 0.00 0.00 3.53
813 814 7.680730 AGTAAGTATATAATGAGGGTGCTTGG 58.319 38.462 0.00 0.00 0.00 3.61
814 815 8.367911 TGAGTAAGTATATAATGAGGGTGCTTG 58.632 37.037 0.00 0.00 0.00 4.01
815 816 8.492415 TGAGTAAGTATATAATGAGGGTGCTT 57.508 34.615 0.00 0.00 0.00 3.91
816 817 8.368668 GTTGAGTAAGTATATAATGAGGGTGCT 58.631 37.037 0.00 0.00 0.00 4.40
817 818 7.603024 GGTTGAGTAAGTATATAATGAGGGTGC 59.397 40.741 0.00 0.00 0.00 5.01
818 819 8.647796 TGGTTGAGTAAGTATATAATGAGGGTG 58.352 37.037 0.00 0.00 0.00 4.61
819 820 8.792830 TGGTTGAGTAAGTATATAATGAGGGT 57.207 34.615 0.00 0.00 0.00 4.34
834 835 7.107542 AGTACACTTGTCTTTTGGTTGAGTAA 58.892 34.615 0.00 0.00 0.00 2.24
839 840 9.019764 CAAATTAGTACACTTGTCTTTTGGTTG 57.980 33.333 0.00 0.00 0.00 3.77
865 866 6.092259 ACTGTCTGGTTTAATTAACATCGCTC 59.908 38.462 0.00 0.00 38.55 5.03
894 895 4.553323 ACCTACGTGTATGTTGTTCAGAC 58.447 43.478 0.00 0.00 38.58 3.51
939 977 0.472734 AGGGCAACAGAGGAGACAGT 60.473 55.000 0.00 0.00 39.74 3.55
973 1011 3.067040 TGCACGCATCAAATATCAGCAAT 59.933 39.130 0.00 0.00 0.00 3.56
997 1035 3.817647 GTCCTCACAAAGAGTTGCATCTT 59.182 43.478 0.00 0.00 43.12 2.40
1179 1218 4.258543 GGACAACGGATTCCTTGTCAATA 58.741 43.478 29.10 0.00 45.48 1.90
1197 1236 1.671742 GAGAAGGGCGAGTTGGACA 59.328 57.895 0.00 0.00 0.00 4.02
1369 1408 0.532573 TCTAGCTGCCTTCCGTCAAG 59.467 55.000 0.00 0.00 0.00 3.02
1377 1416 1.704007 GCCCATCCTCTAGCTGCCTT 61.704 60.000 0.00 0.00 0.00 4.35
1490 1529 1.932156 TATGGGGTTCTTGCGGGCAT 61.932 55.000 0.00 0.00 0.00 4.40
1554 1593 2.680312 TCAATTCCTGGAGCTTCTCG 57.320 50.000 0.00 0.00 0.00 4.04
1634 1673 1.819632 CCACATTCCGCTAGGGTGC 60.820 63.158 6.02 0.00 38.33 5.01
1720 1776 2.607750 TTCTTCCCCTCGCTGCCT 60.608 61.111 0.00 0.00 0.00 4.75
1756 1812 7.277098 TCAAAAGCGTATACCAATAGACAAGAC 59.723 37.037 0.00 0.00 0.00 3.01
1786 1842 5.125417 ACTCTTCACAGCTAGAGATGAGAAC 59.875 44.000 16.45 0.00 39.70 3.01
1801 1857 7.506114 AGGTACTCAACAATTTACTCTTCACA 58.494 34.615 0.00 0.00 0.00 3.58
1813 1869 7.796054 AGCATGATACTTAGGTACTCAACAAT 58.204 34.615 0.00 0.00 41.75 2.71
1824 1880 3.892918 GCAGCAAGCATGATACTTAGG 57.107 47.619 0.00 0.00 44.79 2.69
1957 2019 0.936297 CACAAGAGCAAAACAGCGCC 60.936 55.000 2.29 0.00 40.15 6.53
1982 2085 5.695851 ACCACATTCACTCAGAATTTCAC 57.304 39.130 0.00 0.00 44.48 3.18
2042 2145 1.448985 TTGCTCGAGGGTATTGCAAC 58.551 50.000 15.58 0.00 38.49 4.17
2083 2186 7.206981 TGCTAATTTCTTTATAGCATGGAGC 57.793 36.000 2.79 0.00 45.10 4.70
2124 2227 3.111098 CAAAGAAGAATTATGCGGCTGC 58.889 45.455 11.65 11.65 43.20 5.25
2305 2451 8.818141 ACAATCAGTATACTCGAAATGTATGG 57.182 34.615 1.26 0.00 33.32 2.74
2431 2586 2.568623 TGCTTCAGTTCCTTTCTCCC 57.431 50.000 0.00 0.00 0.00 4.30
2432 2587 4.195416 CCTATGCTTCAGTTCCTTTCTCC 58.805 47.826 0.00 0.00 0.00 3.71
2434 2589 3.846588 TCCCTATGCTTCAGTTCCTTTCT 59.153 43.478 0.00 0.00 0.00 2.52
2438 2593 3.121929 TCTCCCTATGCTTCAGTTCCT 57.878 47.619 0.00 0.00 0.00 3.36
2439 2594 3.914426 TTCTCCCTATGCTTCAGTTCC 57.086 47.619 0.00 0.00 0.00 3.62
2442 2597 4.081198 CAGTCTTTCTCCCTATGCTTCAGT 60.081 45.833 0.00 0.00 0.00 3.41
2443 2598 4.161189 TCAGTCTTTCTCCCTATGCTTCAG 59.839 45.833 0.00 0.00 0.00 3.02
2444 2599 4.096681 TCAGTCTTTCTCCCTATGCTTCA 58.903 43.478 0.00 0.00 0.00 3.02
2445 2600 4.744795 TCAGTCTTTCTCCCTATGCTTC 57.255 45.455 0.00 0.00 0.00 3.86
2446 2601 5.679601 GATTCAGTCTTTCTCCCTATGCTT 58.320 41.667 0.00 0.00 0.00 3.91
2447 2602 4.202202 CGATTCAGTCTTTCTCCCTATGCT 60.202 45.833 0.00 0.00 0.00 3.79
2449 2604 5.046529 CACGATTCAGTCTTTCTCCCTATG 58.953 45.833 0.00 0.00 0.00 2.23
2451 2606 4.087182 ACACGATTCAGTCTTTCTCCCTA 58.913 43.478 0.00 0.00 0.00 3.53
2452 2607 2.900546 ACACGATTCAGTCTTTCTCCCT 59.099 45.455 0.00 0.00 0.00 4.20
2453 2608 3.254892 GACACGATTCAGTCTTTCTCCC 58.745 50.000 0.00 0.00 0.00 4.30
2454 2609 3.056465 AGGACACGATTCAGTCTTTCTCC 60.056 47.826 0.00 0.00 35.18 3.71
2455 2610 3.923461 CAGGACACGATTCAGTCTTTCTC 59.077 47.826 0.00 0.00 35.18 2.87
2456 2611 3.862642 GCAGGACACGATTCAGTCTTTCT 60.863 47.826 0.00 0.00 35.18 2.52
2458 2613 2.037772 AGCAGGACACGATTCAGTCTTT 59.962 45.455 0.00 0.00 35.18 2.52
2459 2614 1.620819 AGCAGGACACGATTCAGTCTT 59.379 47.619 0.00 0.00 35.18 3.01
2462 2617 0.671781 GCAGCAGGACACGATTCAGT 60.672 55.000 0.00 0.00 0.00 3.41
2470 2648 3.248029 CGTCAAGCAGCAGGACAC 58.752 61.111 14.60 0.00 0.00 3.67
2508 2686 3.003480 CGGGAAACAGATGGAAGACTTC 58.997 50.000 6.66 6.66 0.00 3.01
2565 2743 2.168521 CGAGGCTAAGATCCAGGTTGAA 59.831 50.000 0.00 0.00 0.00 2.69
2592 2773 2.981805 CGATAACGTGGAAACAGTCGAA 59.018 45.455 0.00 0.00 44.46 3.71
2672 2853 3.643595 TTTGATCTGCGGCCCCAGG 62.644 63.158 17.38 0.00 33.64 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.