Multiple sequence alignment - TraesCS3B01G061000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G061000 chr3B 100.000 3138 0 0 1 3138 32750412 32747275 0.000000e+00 5795
1 TraesCS3B01G061000 chr3B 100.000 589 0 0 3337 3925 32747076 32746488 0.000000e+00 1088
2 TraesCS3B01G061000 chr3B 81.623 887 141 15 1039 1920 23032898 23032029 0.000000e+00 715
3 TraesCS3B01G061000 chr3D 93.931 2175 110 13 978 3138 20347802 20345636 0.000000e+00 3265
4 TraesCS3B01G061000 chr3D 87.892 446 40 10 3373 3813 20345628 20345192 2.700000e-141 512
5 TraesCS3B01G061000 chr3D 92.593 162 9 1 1 159 20348259 20348098 3.050000e-56 230
6 TraesCS3B01G061000 chr3A 90.925 1708 104 21 355 2040 28128515 28126837 0.000000e+00 2248
7 TraesCS3B01G061000 chr3A 92.685 1121 62 9 2032 3138 28126655 28125541 0.000000e+00 1598
8 TraesCS3B01G061000 chr3A 81.769 927 147 15 1000 1920 20491933 20492843 0.000000e+00 756
9 TraesCS3B01G061000 chr3A 89.032 465 36 8 3357 3813 28125533 28125076 2.650000e-156 562
10 TraesCS3B01G061000 chr3A 88.211 475 36 10 55 528 28130184 28129729 2.060000e-152 549
11 TraesCS3B01G061000 chr1D 91.008 923 81 2 999 1920 446647550 446646629 0.000000e+00 1243
12 TraesCS3B01G061000 chr1D 86.050 638 85 3 2291 2925 446644341 446643705 0.000000e+00 682
13 TraesCS3B01G061000 chr1A 90.368 924 85 4 999 1920 542371352 542370431 0.000000e+00 1210
14 TraesCS3B01G061000 chr1B 89.677 930 92 4 993 1920 611675890 611676817 0.000000e+00 1182
15 TraesCS3B01G061000 chr1B 86.635 636 83 2 2291 2925 611680706 611681340 0.000000e+00 702
16 TraesCS3B01G061000 chr1B 79.302 860 155 18 1010 1848 363480620 363479763 7.310000e-162 580
17 TraesCS3B01G061000 chr2A 78.935 883 167 12 993 1861 6267914 6268791 2.030000e-162 582
18 TraesCS3B01G061000 chr2D 76.895 831 167 18 1107 1918 589318430 589317606 7.740000e-122 448


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G061000 chr3B 32746488 32750412 3924 True 3441.500000 5795 100.00000 1 3925 2 chr3B.!!$R2 3924
1 TraesCS3B01G061000 chr3B 23032029 23032898 869 True 715.000000 715 81.62300 1039 1920 1 chr3B.!!$R1 881
2 TraesCS3B01G061000 chr3D 20345192 20348259 3067 True 1335.666667 3265 91.47200 1 3813 3 chr3D.!!$R1 3812
3 TraesCS3B01G061000 chr3A 28125076 28130184 5108 True 1239.250000 2248 90.21325 55 3813 4 chr3A.!!$R1 3758
4 TraesCS3B01G061000 chr3A 20491933 20492843 910 False 756.000000 756 81.76900 1000 1920 1 chr3A.!!$F1 920
5 TraesCS3B01G061000 chr1D 446643705 446647550 3845 True 962.500000 1243 88.52900 999 2925 2 chr1D.!!$R1 1926
6 TraesCS3B01G061000 chr1A 542370431 542371352 921 True 1210.000000 1210 90.36800 999 1920 1 chr1A.!!$R1 921
7 TraesCS3B01G061000 chr1B 611675890 611681340 5450 False 942.000000 1182 88.15600 993 2925 2 chr1B.!!$F1 1932
8 TraesCS3B01G061000 chr1B 363479763 363480620 857 True 580.000000 580 79.30200 1010 1848 1 chr1B.!!$R1 838
9 TraesCS3B01G061000 chr2A 6267914 6268791 877 False 582.000000 582 78.93500 993 1861 1 chr2A.!!$F1 868
10 TraesCS3B01G061000 chr2D 589317606 589318430 824 True 448.000000 448 76.89500 1107 1918 1 chr2D.!!$R1 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
760 2139 0.319125 TAGTTCACGTGTGATGCGCA 60.319 50.000 14.96 14.96 39.64 6.09 F
863 2251 0.460311 AGGAAATAGTCGGCCTCGTG 59.540 55.000 0.00 0.00 37.69 4.35 F
2459 8278 1.002544 CTCGACAAGCTCCCTTTCCTT 59.997 52.381 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2459 8278 1.592400 CCTCCTTGACGACGCACCTA 61.592 60.000 0.00 0.0 0.00 3.08 R
2801 8620 2.032528 CCGTCAGGCAGCTTCCAA 59.967 61.111 4.85 0.0 0.00 3.53 R
3881 9721 0.325577 GGTGGGGGATGCTCCAAAAT 60.326 55.000 7.71 0.0 38.64 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.357402 GTTGAAACCTAAGTTTAATGTCCACAT 58.643 33.333 0.00 0.00 46.25 3.21
41 42 0.874390 ATGTCCACATGTTCACGTGC 59.126 50.000 11.67 0.00 36.36 5.34
50 51 5.334491 CCACATGTTCACGTGCTATAAAACA 60.334 40.000 17.25 17.25 36.36 2.83
51 52 6.139435 CACATGTTCACGTGCTATAAAACAA 58.861 36.000 18.39 6.34 36.36 2.83
52 53 6.801377 CACATGTTCACGTGCTATAAAACAAT 59.199 34.615 18.39 9.82 36.36 2.71
53 54 7.325821 CACATGTTCACGTGCTATAAAACAATT 59.674 33.333 18.39 8.61 36.36 2.32
63 64 9.982291 CGTGCTATAAAACAATTAACATACACT 57.018 29.630 0.00 0.00 0.00 3.55
108 1300 5.045578 TGAAAGGTGCTTAGCTAGAAATCCT 60.046 40.000 5.60 0.00 0.00 3.24
123 1315 4.397417 AGAAATCCTCAATACACTGCTTGC 59.603 41.667 0.00 0.00 0.00 4.01
141 1336 7.280205 ACTGCTTGCGTTATAGCTTACTAATTT 59.720 33.333 0.00 0.00 38.22 1.82
167 1362 2.689983 CGCTTAGCTTGAAATCCCCAAT 59.310 45.455 1.76 0.00 0.00 3.16
218 1420 6.791867 TGCTGACTGGACATATATATACCC 57.208 41.667 12.61 9.41 0.00 3.69
228 1430 5.709594 ACATATATATACCCTCCCCCGTAC 58.290 45.833 0.00 0.00 0.00 3.67
271 1473 2.270352 TGCTAACAACTCCACCCAAG 57.730 50.000 0.00 0.00 0.00 3.61
272 1474 1.771854 TGCTAACAACTCCACCCAAGA 59.228 47.619 0.00 0.00 0.00 3.02
274 1476 3.219281 GCTAACAACTCCACCCAAGAAA 58.781 45.455 0.00 0.00 0.00 2.52
277 1479 4.513406 AACAACTCCACCCAAGAAACTA 57.487 40.909 0.00 0.00 0.00 2.24
307 1523 8.447924 AAACTTAAAAGAACCCTCAACTACTC 57.552 34.615 0.00 0.00 0.00 2.59
323 1539 7.044181 TCAACTACTCATCTAAGGCATCAAAG 58.956 38.462 0.00 0.00 0.00 2.77
324 1540 6.798427 ACTACTCATCTAAGGCATCAAAGA 57.202 37.500 0.00 0.00 0.00 2.52
336 1552 7.770366 AAGGCATCAAAGAATATATCATGCA 57.230 32.000 0.00 0.00 37.49 3.96
338 1554 6.717997 AGGCATCAAAGAATATATCATGCACA 59.282 34.615 0.00 0.00 37.49 4.57
339 1555 6.805271 GGCATCAAAGAATATATCATGCACAC 59.195 38.462 0.00 0.00 37.49 3.82
340 1556 6.805271 GCATCAAAGAATATATCATGCACACC 59.195 38.462 0.00 0.00 36.11 4.16
356 1572 8.970020 TCATGCACACCTTCTTTTATGAATTAT 58.030 29.630 0.00 0.00 0.00 1.28
478 1856 1.067295 TTCTTGGTCCAGGCTCATGT 58.933 50.000 0.00 0.00 0.00 3.21
483 1861 1.222936 GTCCAGGCTCATGTGAGGG 59.777 63.158 11.66 5.07 42.29 4.30
524 1902 7.612633 ACGGAAATAGCCAATTTAAGGTTCTTA 59.387 33.333 0.00 0.00 37.93 2.10
578 1956 4.630069 AGGTACTTTGCGTAAATACAGCAG 59.370 41.667 0.00 0.00 37.17 4.24
586 1964 5.047847 TGCGTAAATACAGCAGGAGAATAC 58.952 41.667 6.17 0.00 33.94 1.89
589 1967 6.362820 GCGTAAATACAGCAGGAGAATACTAC 59.637 42.308 0.00 0.00 0.00 2.73
644 2022 5.713025 AGCGTGCATGTTGATATTTTTCTT 58.287 33.333 7.93 0.00 0.00 2.52
651 2029 9.585099 TGCATGTTGATATTTTTCTTGATAACC 57.415 29.630 0.00 0.00 0.00 2.85
662 2040 8.519799 TTTTTCTTGATAACCAGAGTCAAACT 57.480 30.769 0.00 0.00 32.08 2.66
678 2056 9.952188 AGAGTCAAACTTAAAAATCAAGTAAGC 57.048 29.630 0.00 0.00 35.19 3.09
695 2074 8.682936 CAAGTAAGCCTTGTATAAATCCATCT 57.317 34.615 0.00 0.00 44.64 2.90
721 2100 8.224025 TGGAGGGAGTATTAATTATTTGATGCA 58.776 33.333 0.00 0.00 0.00 3.96
737 2116 7.754069 TTTGATGCAAAAACAGAAACACTAG 57.246 32.000 0.00 0.00 29.89 2.57
740 2119 5.888691 TGCAAAAACAGAAACACTAGTGA 57.111 34.783 29.30 0.00 0.00 3.41
759 2138 0.999406 ATAGTTCACGTGTGATGCGC 59.001 50.000 16.51 0.00 39.64 6.09
760 2139 0.319125 TAGTTCACGTGTGATGCGCA 60.319 50.000 14.96 14.96 39.64 6.09
782 2161 2.595386 GGCGTGCAAGTGGAATAAAAG 58.405 47.619 0.59 0.00 0.00 2.27
786 2165 4.742659 GCGTGCAAGTGGAATAAAAGAAAA 59.257 37.500 0.59 0.00 0.00 2.29
787 2166 5.332280 GCGTGCAAGTGGAATAAAAGAAAAC 60.332 40.000 0.59 0.00 0.00 2.43
789 2168 6.291585 CGTGCAAGTGGAATAAAAGAAAACAC 60.292 38.462 0.00 0.00 0.00 3.32
791 2170 6.127196 TGCAAGTGGAATAAAAGAAAACACCT 60.127 34.615 0.00 0.00 0.00 4.00
793 2172 7.488322 CAAGTGGAATAAAAGAAAACACCTCA 58.512 34.615 0.00 0.00 0.00 3.86
794 2173 7.039313 AGTGGAATAAAAGAAAACACCTCAC 57.961 36.000 0.00 0.00 0.00 3.51
796 2175 5.303333 TGGAATAAAAGAAAACACCTCACCC 59.697 40.000 0.00 0.00 0.00 4.61
797 2176 5.303333 GGAATAAAAGAAAACACCTCACCCA 59.697 40.000 0.00 0.00 0.00 4.51
863 2251 0.460311 AGGAAATAGTCGGCCTCGTG 59.540 55.000 0.00 0.00 37.69 4.35
908 2298 5.005971 GTGACGCTACTGTTTTTCAACTACA 59.994 40.000 0.00 0.00 33.58 2.74
916 2306 6.358118 CTGTTTTTCAACTACAGTAGCACA 57.642 37.500 7.57 0.00 35.65 4.57
917 2307 6.358118 TGTTTTTCAACTACAGTAGCACAG 57.642 37.500 7.57 0.00 33.58 3.66
932 2323 7.042335 CAGTAGCACAGTATATATAAAGGCCC 58.958 42.308 0.00 0.00 0.00 5.80
944 2335 2.458969 AAAGGCCCCATGCATCCACA 62.459 55.000 0.00 0.00 43.89 4.17
945 2336 2.836360 GGCCCCATGCATCCACAG 60.836 66.667 0.00 0.00 43.89 3.66
991 2396 3.928343 GCTAGTGCTCGATCGTTCT 57.072 52.632 15.94 11.26 36.03 3.01
997 2402 2.860735 AGTGCTCGATCGTTCTTATTGC 59.139 45.455 15.94 8.23 0.00 3.56
1482 2904 3.149648 GAAGGGTACGGGGCGCTA 61.150 66.667 7.64 0.00 0.00 4.26
1783 3223 1.077212 CACATGAGGAGGGGCAAGG 60.077 63.158 0.00 0.00 0.00 3.61
1949 6847 5.593679 TTTGCTGTACTGGTATACTCTCC 57.406 43.478 2.25 0.00 0.00 3.71
1966 6868 2.972021 TCTCCCTGTTCACACATCTCAA 59.028 45.455 0.00 0.00 30.39 3.02
1975 6877 5.294306 TGTTCACACATCTCAAGAACTTCAC 59.706 40.000 0.00 0.00 39.33 3.18
1984 7037 6.174720 TCTCAAGAACTTCACTTGGTACAT 57.825 37.500 0.00 0.00 43.11 2.29
2048 7292 7.389884 TGCGAGGGAGTACTACTAATACTAATG 59.610 40.741 4.77 0.00 32.93 1.90
2079 7824 3.306641 GCATGGCAAGTATTTTGGAACCA 60.307 43.478 0.00 0.00 0.00 3.67
2091 7836 4.463050 TTTGGAACCAAGGGAGTACAAT 57.537 40.909 6.39 0.00 37.24 2.71
2092 7837 4.463050 TTGGAACCAAGGGAGTACAATT 57.537 40.909 1.83 0.00 0.00 2.32
2120 7866 9.909644 TTTTAAGATAGCTAACGTCTATCCATC 57.090 33.333 15.48 4.25 41.93 3.51
2231 7987 7.118496 ACTGGTATATGACTTCCTGAAAGAG 57.882 40.000 0.00 0.00 38.44 2.85
2242 7998 9.046846 TGACTTCCTGAAAGAGAAGGAATATTA 57.953 33.333 4.69 0.00 46.48 0.98
2459 8278 1.002544 CTCGACAAGCTCCCTTTCCTT 59.997 52.381 0.00 0.00 0.00 3.36
2553 8372 1.302192 GTTGTTGGCGGCTACTCCA 60.302 57.895 22.55 5.94 34.01 3.86
2581 8400 2.047274 CTCCCGCGTGTTGGTCAT 60.047 61.111 4.92 0.00 0.00 3.06
2801 8620 1.216178 GCTGGCGCATGGTTTCAAT 59.784 52.632 10.83 0.00 35.78 2.57
2813 8632 1.620323 GGTTTCAATTGGAAGCTGCCT 59.380 47.619 19.35 0.00 36.97 4.75
2970 8791 1.066858 CAGTGCCCACAGAGACGTAAT 60.067 52.381 0.82 0.00 0.00 1.89
2973 8794 3.068307 AGTGCCCACAGAGACGTAATATC 59.932 47.826 0.82 0.00 0.00 1.63
3052 8874 4.713792 AACTATAATTCTCTGCCCCCTG 57.286 45.455 0.00 0.00 0.00 4.45
3115 8946 5.050490 GTGACAAGCATAACATATCCGACT 58.950 41.667 0.00 0.00 0.00 4.18
3436 9267 9.467258 CATATTTGGTCTTACAATAAATGCTGG 57.533 33.333 0.00 0.00 0.00 4.85
3457 9289 7.598493 TGCTGGTCTTCTTGTTTATTATTTTGC 59.402 33.333 0.00 0.00 0.00 3.68
3473 9305 2.132740 TTGCAATGTTTGACTTCGGC 57.867 45.000 0.00 0.00 0.00 5.54
3474 9306 1.317613 TGCAATGTTTGACTTCGGCT 58.682 45.000 0.00 0.00 0.00 5.52
3487 9320 9.865484 GTTTGACTTCGGCTAAAAGATATAATC 57.135 33.333 1.24 0.00 0.00 1.75
3574 9407 2.087646 TGGCATTGCGCACAAGTATAA 58.912 42.857 11.12 0.00 45.17 0.98
3588 9421 6.109359 CACAAGTATAAGAGCTGGCTAAAGT 58.891 40.000 0.00 0.00 0.00 2.66
3590 9423 6.595716 ACAAGTATAAGAGCTGGCTAAAGTTG 59.404 38.462 0.00 0.00 0.00 3.16
3592 9425 2.206576 AAGAGCTGGCTAAAGTTGGG 57.793 50.000 0.00 0.00 0.00 4.12
3593 9426 1.362224 AGAGCTGGCTAAAGTTGGGA 58.638 50.000 0.00 0.00 0.00 4.37
3594 9427 1.705186 AGAGCTGGCTAAAGTTGGGAA 59.295 47.619 0.00 0.00 0.00 3.97
3623 9460 2.496070 TGGAGGAGTTCAAGTCATACCG 59.504 50.000 0.00 0.00 0.00 4.02
3641 9478 2.167900 ACCGGAACCTAAAATCTCCTCG 59.832 50.000 9.46 0.00 0.00 4.63
3683 9520 9.965824 GAAAAATCTTCTCCACAGACAAAATTA 57.034 29.630 0.00 0.00 0.00 1.40
3703 9540 7.786178 AATTAACATGTGAGCGAGCTATAAA 57.214 32.000 0.00 0.00 0.00 1.40
3710 9547 2.956333 TGAGCGAGCTATAAACCTGCTA 59.044 45.455 0.00 0.00 37.16 3.49
3729 9566 8.082852 ACCTGCTATTGTATTTACTCTGATACG 58.917 37.037 0.00 0.00 32.65 3.06
3731 9568 7.658261 TGCTATTGTATTTACTCTGATACGCT 58.342 34.615 0.00 0.00 32.65 5.07
3740 9578 4.300189 ACTCTGATACGCTGATGACTTC 57.700 45.455 0.00 0.00 0.00 3.01
3745 9583 3.128764 TGATACGCTGATGACTTCGACTT 59.871 43.478 0.00 0.00 0.00 3.01
3754 9592 0.250513 GACTTCGACTTGGGGAGCAT 59.749 55.000 0.00 0.00 0.00 3.79
3773 9611 4.164087 ACCGCGACCACCACACAA 62.164 61.111 8.23 0.00 0.00 3.33
3784 9622 0.106268 ACCACACAATGCCCAAGACA 60.106 50.000 0.00 0.00 0.00 3.41
3791 9629 2.102925 ACAATGCCCAAGACAAAACTGG 59.897 45.455 0.00 0.00 0.00 4.00
3817 9657 2.034066 CCAACTGGGCGTCCACAT 59.966 61.111 3.51 0.00 38.32 3.21
3818 9658 2.040544 CCAACTGGGCGTCCACATC 61.041 63.158 3.51 0.00 38.32 3.06
3819 9659 1.003355 CAACTGGGCGTCCACATCT 60.003 57.895 3.51 0.00 38.32 2.90
3820 9660 1.021390 CAACTGGGCGTCCACATCTC 61.021 60.000 3.51 0.00 38.32 2.75
3821 9661 2.185310 AACTGGGCGTCCACATCTCC 62.185 60.000 3.51 0.00 38.32 3.71
3822 9662 2.284625 TGGGCGTCCACATCTCCT 60.285 61.111 3.51 0.00 38.32 3.69
3823 9663 1.001120 TGGGCGTCCACATCTCCTA 59.999 57.895 3.51 0.00 38.32 2.94
3824 9664 1.043116 TGGGCGTCCACATCTCCTAG 61.043 60.000 3.51 0.00 38.32 3.02
3825 9665 1.742768 GGCGTCCACATCTCCTAGG 59.257 63.158 0.82 0.82 0.00 3.02
3826 9666 1.068250 GCGTCCACATCTCCTAGGC 59.932 63.158 2.96 0.00 0.00 3.93
3827 9667 1.360551 CGTCCACATCTCCTAGGCG 59.639 63.158 2.96 0.00 0.00 5.52
3828 9668 1.384989 CGTCCACATCTCCTAGGCGT 61.385 60.000 2.96 0.00 0.00 5.68
3829 9669 0.103208 GTCCACATCTCCTAGGCGTG 59.897 60.000 2.96 8.52 0.00 5.34
3830 9670 1.227380 CCACATCTCCTAGGCGTGC 60.227 63.158 2.96 0.00 0.00 5.34
3831 9671 1.227380 CACATCTCCTAGGCGTGCC 60.227 63.158 2.96 1.67 0.00 5.01
3832 9672 1.685765 ACATCTCCTAGGCGTGCCA 60.686 57.895 14.29 0.00 38.92 4.92
3833 9673 1.227380 CATCTCCTAGGCGTGCCAC 60.227 63.158 14.29 0.00 38.92 5.01
3834 9674 1.685765 ATCTCCTAGGCGTGCCACA 60.686 57.895 14.29 0.00 38.92 4.17
3835 9675 1.050988 ATCTCCTAGGCGTGCCACAT 61.051 55.000 14.29 0.00 38.92 3.21
3836 9676 1.522355 CTCCTAGGCGTGCCACATG 60.522 63.158 14.29 0.00 38.92 3.21
3837 9677 1.960040 CTCCTAGGCGTGCCACATGA 61.960 60.000 14.29 3.21 38.92 3.07
3838 9678 1.522355 CCTAGGCGTGCCACATGAG 60.522 63.158 14.29 0.00 38.92 2.90
3839 9679 2.125147 TAGGCGTGCCACATGAGC 60.125 61.111 14.29 2.13 38.92 4.26
3842 9682 3.857854 GCGTGCCACATGAGCGAG 61.858 66.667 0.00 1.42 0.00 5.03
3843 9683 3.857854 CGTGCCACATGAGCGAGC 61.858 66.667 0.00 0.00 0.00 5.03
3844 9684 2.435586 GTGCCACATGAGCGAGCT 60.436 61.111 0.00 0.00 0.00 4.09
3845 9685 2.125391 TGCCACATGAGCGAGCTC 60.125 61.111 17.42 17.42 43.01 4.09
3846 9686 3.260483 GCCACATGAGCGAGCTCG 61.260 66.667 31.37 31.37 45.48 5.03
3847 9687 2.182791 CCACATGAGCGAGCTCGT 59.817 61.111 34.46 22.24 45.48 4.18
3848 9688 1.875813 CCACATGAGCGAGCTCGTC 60.876 63.158 34.46 28.03 45.48 4.20
3849 9689 1.153958 CACATGAGCGAGCTCGTCA 60.154 57.895 34.46 31.78 45.48 4.35
3850 9690 1.138459 ACATGAGCGAGCTCGTCAG 59.862 57.895 34.46 26.05 45.48 3.51
3851 9691 1.588403 CATGAGCGAGCTCGTCAGG 60.588 63.158 34.46 29.66 45.48 3.86
3852 9692 2.049185 ATGAGCGAGCTCGTCAGGT 61.049 57.895 34.46 19.45 45.48 4.00
3853 9693 0.748367 ATGAGCGAGCTCGTCAGGTA 60.748 55.000 34.46 16.89 45.48 3.08
3854 9694 0.748367 TGAGCGAGCTCGTCAGGTAT 60.748 55.000 34.46 13.74 45.48 2.73
3855 9695 1.227639 GAGCGAGCTCGTCAGGTATA 58.772 55.000 34.46 0.00 42.22 1.47
3856 9696 1.807742 GAGCGAGCTCGTCAGGTATAT 59.192 52.381 34.46 11.16 42.22 0.86
3857 9697 3.001414 GAGCGAGCTCGTCAGGTATATA 58.999 50.000 34.46 0.00 42.22 0.86
3858 9698 3.611970 AGCGAGCTCGTCAGGTATATAT 58.388 45.455 34.46 7.50 42.22 0.86
3859 9699 4.767478 AGCGAGCTCGTCAGGTATATATA 58.233 43.478 34.46 0.00 42.22 0.86
3860 9700 4.571580 AGCGAGCTCGTCAGGTATATATAC 59.428 45.833 34.46 13.60 42.22 1.47
3861 9701 4.331992 GCGAGCTCGTCAGGTATATATACA 59.668 45.833 34.46 1.81 42.22 2.29
3862 9702 5.007823 GCGAGCTCGTCAGGTATATATACAT 59.992 44.000 34.46 13.84 42.22 2.29
3863 9703 6.202379 GCGAGCTCGTCAGGTATATATACATA 59.798 42.308 34.46 6.18 42.22 2.29
3864 9704 7.095144 GCGAGCTCGTCAGGTATATATACATAT 60.095 40.741 34.46 6.88 42.22 1.78
3865 9705 9.420551 CGAGCTCGTCAGGTATATATACATATA 57.579 37.037 27.79 6.47 33.20 0.86
3881 9721 7.849322 ATACATATACCATACCACACTGTCA 57.151 36.000 0.00 0.00 0.00 3.58
3882 9722 6.747414 ACATATACCATACCACACTGTCAT 57.253 37.500 0.00 0.00 0.00 3.06
3883 9723 7.136822 ACATATACCATACCACACTGTCATT 57.863 36.000 0.00 0.00 0.00 2.57
3884 9724 7.573710 ACATATACCATACCACACTGTCATTT 58.426 34.615 0.00 0.00 0.00 2.32
3885 9725 8.052748 ACATATACCATACCACACTGTCATTTT 58.947 33.333 0.00 0.00 0.00 1.82
3886 9726 6.757897 ATACCATACCACACTGTCATTTTG 57.242 37.500 0.00 0.00 0.00 2.44
3887 9727 3.826157 ACCATACCACACTGTCATTTTGG 59.174 43.478 0.00 0.00 0.00 3.28
3888 9728 4.078537 CCATACCACACTGTCATTTTGGA 58.921 43.478 2.59 0.00 0.00 3.53
3889 9729 4.156556 CCATACCACACTGTCATTTTGGAG 59.843 45.833 2.59 0.00 0.00 3.86
3890 9730 1.956477 ACCACACTGTCATTTTGGAGC 59.044 47.619 2.59 0.00 0.00 4.70
3891 9731 1.955778 CCACACTGTCATTTTGGAGCA 59.044 47.619 0.00 0.00 0.00 4.26
3892 9732 2.559668 CCACACTGTCATTTTGGAGCAT 59.440 45.455 0.00 0.00 0.00 3.79
3893 9733 3.366679 CCACACTGTCATTTTGGAGCATC 60.367 47.826 0.00 0.00 0.00 3.91
3904 9744 4.129148 GAGCATCCCCCACCACCC 62.129 72.222 0.00 0.00 0.00 4.61
3906 9746 4.759205 GCATCCCCCACCACCCAC 62.759 72.222 0.00 0.00 0.00 4.61
3907 9747 2.941025 CATCCCCCACCACCCACT 60.941 66.667 0.00 0.00 0.00 4.00
3908 9748 2.941025 ATCCCCCACCACCCACTG 60.941 66.667 0.00 0.00 0.00 3.66
3916 9756 4.225860 CCACCCACTGGTCCAGTA 57.774 61.111 24.31 0.00 45.57 2.74
3917 9757 2.458892 CCACCCACTGGTCCAGTAA 58.541 57.895 24.31 0.00 45.57 2.24
3918 9758 0.768622 CCACCCACTGGTCCAGTAAA 59.231 55.000 24.31 0.00 45.57 2.01
3919 9759 1.354368 CCACCCACTGGTCCAGTAAAT 59.646 52.381 24.31 9.52 45.57 1.40
3920 9760 2.618045 CCACCCACTGGTCCAGTAAATC 60.618 54.545 24.31 0.00 45.57 2.17
3921 9761 1.633945 ACCCACTGGTCCAGTAAATCC 59.366 52.381 24.31 0.00 43.06 3.01
3922 9762 1.633432 CCCACTGGTCCAGTAAATCCA 59.367 52.381 24.31 0.00 43.43 3.41
3923 9763 2.356125 CCCACTGGTCCAGTAAATCCAG 60.356 54.545 24.31 9.99 43.43 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.343366 TGTTAATTGTTTTATAGCACGTGAACA 58.657 29.630 22.23 16.44 0.00 3.18
63 64 5.304778 TCAATTAGTAAGCTGTCACAAGCA 58.695 37.500 0.00 0.00 46.08 3.91
71 72 5.316987 AGCACCTTTCAATTAGTAAGCTGT 58.683 37.500 0.00 0.00 0.00 4.40
108 1300 4.270084 GCTATAACGCAAGCAGTGTATTGA 59.730 41.667 12.65 0.00 40.86 2.57
123 1315 9.178427 AGCGACTTAAATTAGTAAGCTATAACG 57.822 33.333 8.31 0.00 39.14 3.18
141 1336 4.189231 GGGATTTCAAGCTAAGCGACTTA 58.811 43.478 0.00 0.00 0.00 2.24
145 1340 1.280710 TGGGGATTTCAAGCTAAGCGA 59.719 47.619 0.00 0.00 0.00 4.93
167 1362 3.009033 AGCTTGTGTAGTGCTCCCAATAA 59.991 43.478 0.00 0.00 30.41 1.40
184 1379 5.787380 TGTCCAGTCAGCATATATAGCTTG 58.213 41.667 0.00 4.56 41.14 4.01
218 1420 1.896122 GAGTTGGTGGTACGGGGGAG 61.896 65.000 0.00 0.00 0.00 4.30
253 1455 2.561478 TCTTGGGTGGAGTTGTTAGC 57.439 50.000 0.00 0.00 0.00 3.09
285 1487 8.097662 AGATGAGTAGTTGAGGGTTCTTTTAAG 58.902 37.037 0.00 0.00 0.00 1.85
286 1488 7.974504 AGATGAGTAGTTGAGGGTTCTTTTAA 58.025 34.615 0.00 0.00 0.00 1.52
294 1510 3.707102 GCCTTAGATGAGTAGTTGAGGGT 59.293 47.826 0.00 0.00 0.00 4.34
300 1516 7.187824 TCTTTGATGCCTTAGATGAGTAGTT 57.812 36.000 0.00 0.00 0.00 2.24
301 1517 6.798427 TCTTTGATGCCTTAGATGAGTAGT 57.202 37.500 0.00 0.00 0.00 2.73
438 1816 9.199982 CAAGAATAATCAACAGATGCTTTTGTT 57.800 29.630 3.00 3.00 37.99 2.83
446 1824 6.039047 CCTGGACCAAGAATAATCAACAGATG 59.961 42.308 0.00 0.00 0.00 2.90
478 1856 1.562672 GCTTGGGAGCCTTACCCTCA 61.563 60.000 0.00 0.00 46.82 3.86
507 1885 9.582431 GATAAACCTTAAGAACCTTAAATTGGC 57.418 33.333 3.36 0.00 0.00 4.52
609 1987 6.038050 TCAACATGCACGCTATCAAATCAATA 59.962 34.615 0.00 0.00 0.00 1.90
615 1993 6.375945 AATATCAACATGCACGCTATCAAA 57.624 33.333 0.00 0.00 0.00 2.69
677 2055 5.006386 CCTCCAGATGGATTTATACAAGGC 58.994 45.833 1.15 0.00 44.46 4.35
678 2056 5.310594 TCCCTCCAGATGGATTTATACAAGG 59.689 44.000 1.15 0.00 44.46 3.61
684 2063 8.757307 TTAATACTCCCTCCAGATGGATTTAT 57.243 34.615 1.15 0.00 44.46 1.40
685 2064 8.757307 ATTAATACTCCCTCCAGATGGATTTA 57.243 34.615 1.15 0.00 44.46 1.40
689 2068 8.757307 AATAATTAATACTCCCTCCAGATGGA 57.243 34.615 0.79 0.79 43.08 3.41
695 2074 8.224025 TGCATCAAATAATTAATACTCCCTCCA 58.776 33.333 0.00 0.00 0.00 3.86
721 2100 9.391006 TGAACTATCACTAGTGTTTCTGTTTTT 57.609 29.630 21.99 5.11 38.23 1.94
740 2119 0.999406 GCGCATCACACGTGAACTAT 59.001 50.000 25.01 6.71 43.58 2.12
759 2138 0.676466 TATTCCACTTGCACGCCCTG 60.676 55.000 0.00 0.00 0.00 4.45
760 2139 0.037590 TTATTCCACTTGCACGCCCT 59.962 50.000 0.00 0.00 0.00 5.19
782 2161 2.650322 TCTTGTGGGTGAGGTGTTTTC 58.350 47.619 0.00 0.00 0.00 2.29
786 2165 2.818751 TTTTCTTGTGGGTGAGGTGT 57.181 45.000 0.00 0.00 0.00 4.16
835 2223 5.538813 AGGCCGACTATTTCCTTTTCTTTTT 59.461 36.000 0.00 0.00 0.00 1.94
836 2224 5.077564 AGGCCGACTATTTCCTTTTCTTTT 58.922 37.500 0.00 0.00 0.00 2.27
837 2225 4.663334 AGGCCGACTATTTCCTTTTCTTT 58.337 39.130 0.00 0.00 0.00 2.52
838 2226 4.262617 GAGGCCGACTATTTCCTTTTCTT 58.737 43.478 0.00 0.00 0.00 2.52
839 2227 3.679083 CGAGGCCGACTATTTCCTTTTCT 60.679 47.826 0.00 0.00 38.22 2.52
840 2228 2.608090 CGAGGCCGACTATTTCCTTTTC 59.392 50.000 0.00 0.00 38.22 2.29
841 2229 2.027469 ACGAGGCCGACTATTTCCTTTT 60.027 45.455 0.00 0.00 39.50 2.27
842 2230 1.553704 ACGAGGCCGACTATTTCCTTT 59.446 47.619 0.00 0.00 39.50 3.11
843 2231 1.134788 CACGAGGCCGACTATTTCCTT 60.135 52.381 0.00 0.00 39.50 3.36
844 2232 0.460311 CACGAGGCCGACTATTTCCT 59.540 55.000 0.00 0.00 39.50 3.36
845 2233 0.175073 ACACGAGGCCGACTATTTCC 59.825 55.000 0.00 0.00 39.50 3.13
846 2234 1.278238 CACACGAGGCCGACTATTTC 58.722 55.000 0.00 0.00 39.50 2.17
847 2235 0.739813 GCACACGAGGCCGACTATTT 60.740 55.000 0.00 0.00 39.50 1.40
863 2251 1.066002 ACCGCATGATAGCAATTGCAC 59.934 47.619 30.89 20.83 45.16 4.57
908 2298 6.156429 GGGGCCTTTATATATACTGTGCTACT 59.844 42.308 0.84 0.00 0.00 2.57
913 2303 5.590259 GCATGGGGCCTTTATATATACTGTG 59.410 44.000 0.84 0.00 36.11 3.66
916 2306 6.410853 GGATGCATGGGGCCTTTATATATACT 60.411 42.308 2.46 0.00 43.89 2.12
917 2307 5.770162 GGATGCATGGGGCCTTTATATATAC 59.230 44.000 2.46 0.00 43.89 1.47
944 2335 2.188817 AGAAACTCCGCTGTAATCCCT 58.811 47.619 0.00 0.00 0.00 4.20
945 2336 2.678336 CAAGAAACTCCGCTGTAATCCC 59.322 50.000 0.00 0.00 0.00 3.85
950 2341 3.799366 TCAAACAAGAAACTCCGCTGTA 58.201 40.909 0.00 0.00 0.00 2.74
997 2402 0.033228 TTTGCAAAGGTCGCCATTGG 59.967 50.000 8.05 0.00 33.44 3.16
1304 2726 3.755628 CCGGGCGGTTCGAGAAGA 61.756 66.667 0.00 0.00 0.00 2.87
1949 6847 4.384056 AGTTCTTGAGATGTGTGAACAGG 58.616 43.478 0.00 0.00 39.33 4.00
2048 7292 7.148590 CCAAAATACTTGCCATGCTTTTAGTTC 60.149 37.037 0.00 0.00 0.00 3.01
2060 7805 3.323403 CCTTGGTTCCAAAATACTTGCCA 59.677 43.478 5.76 0.00 0.00 4.92
2062 7807 3.576550 TCCCTTGGTTCCAAAATACTTGC 59.423 43.478 5.76 0.00 0.00 4.01
2108 7854 9.996554 TTAACATTTCATATGATGGATAGACGT 57.003 29.630 6.17 0.00 0.00 4.34
2254 8010 3.388024 AGATAGCCACGTCACCACAATAT 59.612 43.478 0.00 0.00 0.00 1.28
2459 8278 1.592400 CCTCCTTGACGACGCACCTA 61.592 60.000 0.00 0.00 0.00 3.08
2581 8400 2.331893 CGGTTGATCGCCCAAGCAA 61.332 57.895 15.38 0.00 42.73 3.91
2801 8620 2.032528 CCGTCAGGCAGCTTCCAA 59.967 61.111 4.85 0.00 0.00 3.53
2970 8791 8.108999 AGGTGTAGCATTATTGGCAATATGATA 58.891 33.333 19.88 17.78 0.00 2.15
2973 8794 6.579666 AGGTGTAGCATTATTGGCAATATG 57.420 37.500 19.88 18.59 0.00 1.78
3025 8847 6.551227 GGGGGCAGAGAATTATAGTTTGAAAT 59.449 38.462 0.00 0.00 0.00 2.17
3336 9167 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3337 9168 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3338 9169 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3339 9170 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3340 9171 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3341 9172 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3342 9173 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3343 9174 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3344 9175 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3345 9176 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3346 9177 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3347 9178 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3348 9179 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3349 9180 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3350 9181 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3351 9182 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3352 9183 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3353 9184 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3354 9185 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3355 9186 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3457 9289 5.757886 TCTTTTAGCCGAAGTCAAACATTG 58.242 37.500 0.00 0.00 0.00 2.82
3574 9407 1.362224 TCCCAACTTTAGCCAGCTCT 58.638 50.000 0.00 0.00 0.00 4.09
3588 9421 4.047166 ACTCCTCCATATCACATTCCCAA 58.953 43.478 0.00 0.00 0.00 4.12
3590 9423 4.103153 TGAACTCCTCCATATCACATTCCC 59.897 45.833 0.00 0.00 0.00 3.97
3592 9425 6.352516 ACTTGAACTCCTCCATATCACATTC 58.647 40.000 0.00 0.00 0.00 2.67
3593 9426 6.070021 TGACTTGAACTCCTCCATATCACATT 60.070 38.462 0.00 0.00 0.00 2.71
3594 9427 5.426509 TGACTTGAACTCCTCCATATCACAT 59.573 40.000 0.00 0.00 0.00 3.21
3623 9460 4.467198 TGTCGAGGAGATTTTAGGTTCC 57.533 45.455 0.00 0.00 0.00 3.62
3683 9520 3.871594 GGTTTATAGCTCGCTCACATGTT 59.128 43.478 0.00 0.00 0.00 2.71
3703 9540 8.082852 CGTATCAGAGTAAATACAATAGCAGGT 58.917 37.037 0.00 0.00 0.00 4.00
3710 9547 8.360390 TCATCAGCGTATCAGAGTAAATACAAT 58.640 33.333 0.00 0.00 0.00 2.71
3727 9564 1.670087 CCAAGTCGAAGTCATCAGCGT 60.670 52.381 0.00 0.00 0.00 5.07
3729 9566 1.363744 CCCAAGTCGAAGTCATCAGC 58.636 55.000 0.00 0.00 0.00 4.26
3731 9568 1.550524 CTCCCCAAGTCGAAGTCATCA 59.449 52.381 0.00 0.00 0.00 3.07
3740 9578 1.450312 GGTCATGCTCCCCAAGTCG 60.450 63.158 0.00 0.00 0.00 4.18
3754 9592 4.595538 GTGTGGTGGTCGCGGTCA 62.596 66.667 6.13 1.58 0.00 4.02
3773 9611 1.963515 GACCAGTTTTGTCTTGGGCAT 59.036 47.619 0.00 0.00 0.00 4.40
3784 9622 3.502211 CAGTTGGCTAATCGACCAGTTTT 59.498 43.478 0.00 0.00 37.24 2.43
3813 9653 1.227380 GGCACGCCTAGGAGATGTG 60.227 63.158 20.46 17.45 0.00 3.21
3814 9654 1.685765 TGGCACGCCTAGGAGATGT 60.686 57.895 20.46 5.05 36.94 3.06
3815 9655 1.227380 GTGGCACGCCTAGGAGATG 60.227 63.158 20.46 13.99 36.94 2.90
3816 9656 1.050988 ATGTGGCACGCCTAGGAGAT 61.051 55.000 20.46 0.44 38.60 2.75
3817 9657 1.685765 ATGTGGCACGCCTAGGAGA 60.686 57.895 20.46 0.00 38.60 3.71
3818 9658 1.522355 CATGTGGCACGCCTAGGAG 60.522 63.158 14.75 12.99 38.60 3.69
3819 9659 1.960040 CTCATGTGGCACGCCTAGGA 61.960 60.000 14.75 1.36 38.60 2.94
3820 9660 1.522355 CTCATGTGGCACGCCTAGG 60.522 63.158 13.77 3.67 38.60 3.02
3821 9661 2.176273 GCTCATGTGGCACGCCTAG 61.176 63.158 13.77 8.73 38.60 3.02
3822 9662 2.125147 GCTCATGTGGCACGCCTA 60.125 61.111 13.77 0.00 38.60 3.93
3825 9665 3.857854 CTCGCTCATGTGGCACGC 61.858 66.667 13.77 9.12 40.62 5.34
3826 9666 3.857854 GCTCGCTCATGTGGCACG 61.858 66.667 13.77 0.00 0.00 5.34
3827 9667 2.435586 AGCTCGCTCATGTGGCAC 60.436 61.111 11.55 11.55 0.00 5.01
3828 9668 2.125391 GAGCTCGCTCATGTGGCA 60.125 61.111 13.69 0.00 42.31 4.92
3829 9669 3.260483 CGAGCTCGCTCATGTGGC 61.260 66.667 25.07 0.00 42.86 5.01
3830 9670 1.875813 GACGAGCTCGCTCATGTGG 60.876 63.158 34.83 6.98 42.86 4.17
3831 9671 1.138636 CTGACGAGCTCGCTCATGTG 61.139 60.000 34.83 19.67 42.86 3.21
3832 9672 1.138459 CTGACGAGCTCGCTCATGT 59.862 57.895 34.83 15.48 42.86 3.21
3833 9673 1.588403 CCTGACGAGCTCGCTCATG 60.588 63.158 34.83 25.79 42.86 3.07
3834 9674 0.748367 TACCTGACGAGCTCGCTCAT 60.748 55.000 34.83 22.40 42.86 2.90
3835 9675 0.748367 ATACCTGACGAGCTCGCTCA 60.748 55.000 34.83 30.44 42.86 4.26
3836 9676 1.227639 TATACCTGACGAGCTCGCTC 58.772 55.000 34.83 27.97 44.43 5.03
3837 9677 1.898902 ATATACCTGACGAGCTCGCT 58.101 50.000 34.83 21.95 44.43 4.93
3838 9678 4.331992 TGTATATATACCTGACGAGCTCGC 59.668 45.833 34.83 26.13 36.24 5.03
3839 9679 6.606234 ATGTATATATACCTGACGAGCTCG 57.394 41.667 33.45 33.45 37.65 5.03
3855 9695 9.541884 TGACAGTGTGGTATGGTATATGTATAT 57.458 33.333 0.00 0.00 0.00 0.86
3856 9696 8.943594 TGACAGTGTGGTATGGTATATGTATA 57.056 34.615 0.00 0.00 0.00 1.47
3857 9697 7.849322 TGACAGTGTGGTATGGTATATGTAT 57.151 36.000 0.00 0.00 0.00 2.29
3858 9698 7.849322 ATGACAGTGTGGTATGGTATATGTA 57.151 36.000 0.00 0.00 0.00 2.29
3859 9699 6.747414 ATGACAGTGTGGTATGGTATATGT 57.253 37.500 0.00 0.00 0.00 2.29
3860 9700 8.344831 CAAAATGACAGTGTGGTATGGTATATG 58.655 37.037 0.00 0.00 0.00 1.78
3861 9701 7.502226 CCAAAATGACAGTGTGGTATGGTATAT 59.498 37.037 0.00 0.00 0.00 0.86
3862 9702 6.826231 CCAAAATGACAGTGTGGTATGGTATA 59.174 38.462 0.00 0.00 0.00 1.47
3863 9703 5.652014 CCAAAATGACAGTGTGGTATGGTAT 59.348 40.000 0.00 0.00 0.00 2.73
3864 9704 5.007034 CCAAAATGACAGTGTGGTATGGTA 58.993 41.667 0.00 0.00 0.00 3.25
3865 9705 3.826157 CCAAAATGACAGTGTGGTATGGT 59.174 43.478 0.00 0.00 0.00 3.55
3866 9706 4.078537 TCCAAAATGACAGTGTGGTATGG 58.921 43.478 11.77 2.92 0.00 2.74
3867 9707 4.379813 GCTCCAAAATGACAGTGTGGTATG 60.380 45.833 11.77 5.35 0.00 2.39
3868 9708 3.758554 GCTCCAAAATGACAGTGTGGTAT 59.241 43.478 11.77 0.00 0.00 2.73
3869 9709 3.146066 GCTCCAAAATGACAGTGTGGTA 58.854 45.455 11.77 0.00 0.00 3.25
3870 9710 1.956477 GCTCCAAAATGACAGTGTGGT 59.044 47.619 11.77 0.00 0.00 4.16
3871 9711 1.955778 TGCTCCAAAATGACAGTGTGG 59.044 47.619 5.71 5.71 0.00 4.17
3872 9712 3.366679 GGATGCTCCAAAATGACAGTGTG 60.367 47.826 0.00 0.00 36.28 3.82
3873 9713 2.821969 GGATGCTCCAAAATGACAGTGT 59.178 45.455 0.00 0.00 36.28 3.55
3874 9714 2.165030 GGGATGCTCCAAAATGACAGTG 59.835 50.000 4.85 0.00 38.64 3.66
3875 9715 2.450476 GGGATGCTCCAAAATGACAGT 58.550 47.619 4.85 0.00 38.64 3.55
3876 9716 1.753073 GGGGATGCTCCAAAATGACAG 59.247 52.381 4.85 0.00 38.64 3.51
3877 9717 1.619432 GGGGGATGCTCCAAAATGACA 60.619 52.381 0.00 0.00 38.64 3.58
3878 9718 1.114627 GGGGGATGCTCCAAAATGAC 58.885 55.000 0.00 0.00 38.64 3.06
3879 9719 0.709397 TGGGGGATGCTCCAAAATGA 59.291 50.000 1.85 0.00 38.64 2.57
3880 9720 0.826062 GTGGGGGATGCTCCAAAATG 59.174 55.000 7.71 0.00 38.64 2.32
3881 9721 0.325577 GGTGGGGGATGCTCCAAAAT 60.326 55.000 7.71 0.00 38.64 1.82
3882 9722 1.078347 GGTGGGGGATGCTCCAAAA 59.922 57.895 7.71 0.00 38.64 2.44
3883 9723 2.166346 TGGTGGGGGATGCTCCAAA 61.166 57.895 7.71 0.00 38.64 3.28
3884 9724 2.534011 TGGTGGGGGATGCTCCAA 60.534 61.111 7.71 0.00 38.64 3.53
3885 9725 3.338250 GTGGTGGGGGATGCTCCA 61.338 66.667 0.00 0.00 38.64 3.86
3886 9726 4.129148 GGTGGTGGGGGATGCTCC 62.129 72.222 0.00 0.00 35.23 4.70
3887 9727 4.129148 GGGTGGTGGGGGATGCTC 62.129 72.222 0.00 0.00 0.00 4.26
3889 9729 4.759205 GTGGGTGGTGGGGGATGC 62.759 72.222 0.00 0.00 0.00 3.91
3890 9730 2.941025 AGTGGGTGGTGGGGGATG 60.941 66.667 0.00 0.00 0.00 3.51
3891 9731 2.941025 CAGTGGGTGGTGGGGGAT 60.941 66.667 0.00 0.00 0.00 3.85
3902 9742 1.633432 TGGATTTACTGGACCAGTGGG 59.367 52.381 33.24 7.16 45.01 4.61
3903 9743 2.991250 CTGGATTTACTGGACCAGTGG 58.009 52.381 33.24 7.91 45.01 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.