Multiple sequence alignment - TraesCS3B01G060900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G060900 chr3B 100.000 2456 0 0 1 2456 32734399 32731944 0.000000e+00 4536.0
1 TraesCS3B01G060900 chr3B 94.393 321 11 5 16 329 823186201 823185881 1.020000e-133 486.0
2 TraesCS3B01G060900 chr3B 94.393 107 6 0 330 436 785751598 785751704 5.430000e-37 165.0
3 TraesCS3B01G060900 chr3B 93.578 109 7 0 330 438 578397248 578397140 1.950000e-36 163.0
4 TraesCS3B01G060900 chr3B 93.684 95 6 0 1660 1754 33332704 33332610 2.550000e-30 143.0
5 TraesCS3B01G060900 chr3B 76.277 274 38 13 1503 1752 33298610 33298340 1.190000e-23 121.0
6 TraesCS3B01G060900 chr3B 83.065 124 19 2 2139 2261 32538848 32538726 7.180000e-21 111.0
7 TraesCS3B01G060900 chr3B 83.065 124 19 2 2139 2261 32595980 32595858 7.180000e-21 111.0
8 TraesCS3B01G060900 chr3B 97.727 44 1 0 1755 1798 225456458 225456501 2.620000e-10 76.8
9 TraesCS3B01G060900 chr3B 100.000 35 0 0 892 926 32948913 32948879 5.670000e-07 65.8
10 TraesCS3B01G060900 chr3D 89.663 832 75 6 988 1811 20333661 20332833 0.000000e+00 1050.0
11 TraesCS3B01G060900 chr3D 89.262 447 45 2 440 886 20334824 20334381 7.670000e-155 556.0
12 TraesCS3B01G060900 chr3D 91.304 161 14 0 2133 2293 20332502 20332342 1.140000e-53 220.0
13 TraesCS3B01G060900 chr3D 92.667 150 11 0 2307 2456 20332355 20332206 1.480000e-52 217.0
14 TraesCS3B01G060900 chr3D 89.571 163 8 6 1974 2135 20332693 20332539 5.360000e-47 198.0
15 TraesCS3B01G060900 chr3D 83.721 129 18 1 1297 1425 20325711 20325586 4.290000e-23 119.0
16 TraesCS3B01G060900 chr3D 85.714 112 13 2 1245 1353 20697113 20697002 5.550000e-22 115.0
17 TraesCS3B01G060900 chr3D 88.172 93 10 1 2177 2269 20016981 20016890 2.580000e-20 110.0
18 TraesCS3B01G060900 chr3D 85.294 102 14 1 2155 2256 20617565 20617465 1.200000e-18 104.0
19 TraesCS3B01G060900 chr3D 88.710 62 4 3 996 1054 20142248 20142187 3.390000e-09 73.1
20 TraesCS3B01G060900 chr3D 92.308 52 3 1 886 936 20333714 20333663 3.390000e-09 73.1
21 TraesCS3B01G060900 chr3D 94.872 39 1 1 1809 1847 20232270 20232233 2.640000e-05 60.2
22 TraesCS3B01G060900 chr3D 100.000 30 0 0 2379 2408 20212323 20212294 3.410000e-04 56.5
23 TraesCS3B01G060900 chr3A 89.023 665 45 10 1104 1761 28057251 28056608 0.000000e+00 798.0
24 TraesCS3B01G060900 chr3A 92.576 229 14 3 1835 2063 28056557 28056332 2.360000e-85 326.0
25 TraesCS3B01G060900 chr3A 94.410 161 9 0 2133 2293 28055920 28055760 5.240000e-62 248.0
26 TraesCS3B01G060900 chr3A 93.333 150 10 0 2307 2456 28055773 28055624 3.180000e-54 222.0
27 TraesCS3B01G060900 chr3A 95.522 134 6 0 753 886 28065291 28065158 5.320000e-52 215.0
28 TraesCS3B01G060900 chr3A 80.597 268 32 13 969 1216 27877079 27876812 3.220000e-44 189.0
29 TraesCS3B01G060900 chr3A 79.273 275 30 13 1502 1752 28390850 28390579 1.510000e-37 167.0
30 TraesCS3B01G060900 chr3A 88.073 109 12 1 2161 2269 27765485 27765378 7.130000e-26 128.0
31 TraesCS3B01G060900 chr3A 87.879 66 4 4 996 1058 27798333 27798269 9.420000e-10 75.0
32 TraesCS3B01G060900 chr3A 81.818 88 11 3 2369 2454 27882575 27882491 4.380000e-08 69.4
33 TraesCS3B01G060900 chr3A 97.436 39 0 1 1809 1847 27908978 27908941 5.670000e-07 65.8
34 TraesCS3B01G060900 chr2B 96.049 329 11 2 1 329 491069970 491070296 3.590000e-148 534.0
35 TraesCS3B01G060900 chr2B 96.907 291 4 2 39 329 769891032 769890747 1.320000e-132 483.0
36 TraesCS3B01G060900 chr2B 93.353 331 9 5 1 331 716645474 716645157 6.140000e-131 477.0
37 TraesCS3B01G060900 chr2B 94.167 120 6 1 330 449 769890200 769890082 5.400000e-42 182.0
38 TraesCS3B01G060900 chr2B 94.340 106 6 0 330 435 7844803 7844908 1.950000e-36 163.0
39 TraesCS3B01G060900 chr2B 93.396 106 7 0 330 435 491070814 491070919 9.090000e-35 158.0
40 TraesCS3B01G060900 chr2B 95.918 49 2 0 1756 1804 52717927 52717975 2.020000e-11 80.5
41 TraesCS3B01G060900 chr2B 92.308 52 4 0 1756 1807 113599165 113599216 9.420000e-10 75.0
42 TraesCS3B01G060900 chr7B 96.024 327 9 1 1 327 404188632 404188310 1.670000e-146 529.0
43 TraesCS3B01G060900 chr7B 96.203 316 9 2 17 329 146975828 146976143 4.680000e-142 514.0
44 TraesCS3B01G060900 chr7B 94.545 110 5 1 330 439 180041476 180041368 4.200000e-38 169.0
45 TraesCS3B01G060900 chr7B 95.050 101 5 0 335 435 404187759 404187659 2.530000e-35 159.0
46 TraesCS3B01G060900 chr1B 93.656 331 15 5 1 329 592548984 592549310 7.890000e-135 490.0
47 TraesCS3B01G060900 chr6B 92.401 329 19 2 1 329 478481484 478481806 4.780000e-127 464.0
48 TraesCS3B01G060900 chr6B 96.364 110 4 0 330 439 692034409 692034518 5.400000e-42 182.0
49 TraesCS3B01G060900 chr6B 84.507 71 9 2 1754 1823 64320385 64320454 4.380000e-08 69.4
50 TraesCS3B01G060900 chr7A 93.082 318 16 5 12 329 119291491 119291180 6.190000e-126 460.0
51 TraesCS3B01G060900 chr5B 92.174 115 8 1 330 443 351279151 351279037 7.030000e-36 161.0
52 TraesCS3B01G060900 chr5A 92.208 77 5 1 2381 2456 616789776 616789852 9.290000e-20 108.0
53 TraesCS3B01G060900 chr5A 90.909 77 6 1 2381 2456 582940932 582941008 4.320000e-18 102.0
54 TraesCS3B01G060900 chr4A 92.208 77 5 1 2381 2456 90328446 90328522 9.290000e-20 108.0
55 TraesCS3B01G060900 chr4A 90.541 74 6 1 2384 2456 95387939 95387866 2.010000e-16 97.1
56 TraesCS3B01G060900 chr6D 97.872 47 1 0 1756 1802 465968920 465968966 5.630000e-12 82.4
57 TraesCS3B01G060900 chr2D 100.000 44 0 0 1757 1800 116513258 116513215 5.630000e-12 82.4
58 TraesCS3B01G060900 chr1D 94.231 52 3 0 1756 1807 473539165 473539114 2.020000e-11 80.5
59 TraesCS3B01G060900 chr6A 94.118 51 2 1 1754 1804 181020905 181020856 2.620000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G060900 chr3B 32731944 32734399 2455 True 4536.000000 4536 100.000000 1 2456 1 chr3B.!!$R3 2455
1 TraesCS3B01G060900 chr3D 20332206 20334824 2618 True 385.683333 1050 90.795833 440 2456 6 chr3D.!!$R8 2016
2 TraesCS3B01G060900 chr3A 28055624 28057251 1627 True 398.500000 798 92.335500 1104 2456 4 chr3A.!!$R8 1352
3 TraesCS3B01G060900 chr2B 491069970 491070919 949 False 346.000000 534 94.722500 1 435 2 chr2B.!!$F4 434
4 TraesCS3B01G060900 chr2B 769890082 769891032 950 True 332.500000 483 95.537000 39 449 2 chr2B.!!$R2 410
5 TraesCS3B01G060900 chr7B 404187659 404188632 973 True 344.000000 529 95.537000 1 435 2 chr7B.!!$R2 434

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 939 0.106167 TCGGGAGAAGTGGATCGGAT 60.106 55.0 0.0 0.0 34.75 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2294 3993 0.037512 CAATGCATGACCCCGCAAAA 60.038 50.0 0.0 0.0 42.37 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
242 243 1.070914 TGGTAAATGTGGCGACTGTGA 59.929 47.619 0.00 0.00 0.00 3.58
246 247 0.667487 AATGTGGCGACTGTGACGAG 60.667 55.000 0.00 0.00 0.00 4.18
247 248 2.430921 GTGGCGACTGTGACGAGG 60.431 66.667 0.00 0.00 0.00 4.63
248 249 3.680786 TGGCGACTGTGACGAGGG 61.681 66.667 0.00 0.00 0.00 4.30
249 250 4.436998 GGCGACTGTGACGAGGGG 62.437 72.222 0.00 0.00 0.00 4.79
250 251 3.681835 GCGACTGTGACGAGGGGT 61.682 66.667 0.00 0.00 0.00 4.95
384 939 0.106167 TCGGGAGAAGTGGATCGGAT 60.106 55.000 0.00 0.00 34.75 4.18
413 968 3.412386 GATCTGTTGCTAACCACCAGTT 58.588 45.455 0.00 0.00 42.83 3.16
414 969 3.290948 TCTGTTGCTAACCACCAGTTT 57.709 42.857 0.00 0.00 40.05 2.66
476 1031 5.890334 TGTTTTGAAGGTGTTGATGTCTTC 58.110 37.500 0.00 0.00 36.93 2.87
482 1037 4.713792 AGGTGTTGATGTCTTCTTCCTT 57.286 40.909 0.00 0.00 0.00 3.36
485 1040 4.023707 GGTGTTGATGTCTTCTTCCTTGTG 60.024 45.833 0.00 0.00 0.00 3.33
497 1052 1.813753 CCTTGTGTATCCACCGGCG 60.814 63.158 0.00 0.00 41.09 6.46
499 1054 3.318006 TTGTGTATCCACCGGCGGG 62.318 63.158 31.78 18.68 41.09 6.13
513 1068 4.180946 CGGGAGGTCGCGTGAGAG 62.181 72.222 5.77 0.00 45.50 3.20
522 1077 0.110328 TCGCGTGAGAGAACTCGTTC 60.110 55.000 5.77 1.62 45.25 3.95
558 1113 2.374184 CATCTCAGGTCCGACTTCTCT 58.626 52.381 0.00 0.00 0.00 3.10
569 1124 2.354510 CCGACTTCTCTGCAACAAACAA 59.645 45.455 0.00 0.00 0.00 2.83
577 1132 4.335315 TCTCTGCAACAAACAACTCGAAAT 59.665 37.500 0.00 0.00 0.00 2.17
584 1139 6.677913 CAACAAACAACTCGAAATAATCCCT 58.322 36.000 0.00 0.00 0.00 4.20
587 1142 6.488683 ACAAACAACTCGAAATAATCCCTTGA 59.511 34.615 0.00 0.00 0.00 3.02
590 1145 6.238648 ACAACTCGAAATAATCCCTTGAACT 58.761 36.000 0.00 0.00 0.00 3.01
591 1146 6.371825 ACAACTCGAAATAATCCCTTGAACTC 59.628 38.462 0.00 0.00 0.00 3.01
593 1148 3.869246 TCGAAATAATCCCTTGAACTCGC 59.131 43.478 0.00 0.00 0.00 5.03
596 1151 3.644966 ATAATCCCTTGAACTCGCCAA 57.355 42.857 0.00 0.00 0.00 4.52
599 1154 0.762418 TCCCTTGAACTCGCCAAAGA 59.238 50.000 0.00 0.00 0.00 2.52
600 1155 1.160137 CCCTTGAACTCGCCAAAGAG 58.840 55.000 0.00 0.00 43.56 2.85
617 1172 1.623811 AGAGTCACCTAACGCAACCAT 59.376 47.619 0.00 0.00 0.00 3.55
630 1185 2.142356 CAACCATTGCCATGACCCTA 57.858 50.000 0.00 0.00 31.07 3.53
635 1190 3.033184 CCATTGCCATGACCCTAACATT 58.967 45.455 0.00 0.00 31.07 2.71
639 1194 1.406539 GCCATGACCCTAACATTGCTG 59.593 52.381 0.00 0.00 34.84 4.41
684 1239 1.966451 GAAGCCCCGACACCACAAG 60.966 63.158 0.00 0.00 0.00 3.16
700 1255 4.949856 ACCACAAGTGTCTTCTTCAACAAT 59.050 37.500 0.00 0.00 0.00 2.71
709 1264 9.213799 AGTGTCTTCTTCAACAATTCTATCTTC 57.786 33.333 0.00 0.00 0.00 2.87
711 1266 8.378565 TGTCTTCTTCAACAATTCTATCTTCCT 58.621 33.333 0.00 0.00 0.00 3.36
727 1282 2.409870 CCTGATGCCCCGCTTCAAC 61.410 63.158 4.12 0.00 41.04 3.18
729 1284 1.651240 CTGATGCCCCGCTTCAACAG 61.651 60.000 4.12 0.00 41.04 3.16
738 1293 3.143675 GCTTCAACAGCGATCCTCA 57.856 52.632 0.00 0.00 39.29 3.86
756 1311 2.947652 CTCAGATTCCGATGTTTGCCAT 59.052 45.455 0.00 0.00 36.13 4.40
775 1330 3.679980 CCATGACAAGACTTAACAGACGG 59.320 47.826 0.00 0.00 0.00 4.79
777 1332 2.067013 GACAAGACTTAACAGACGGCC 58.933 52.381 0.00 0.00 0.00 6.13
780 1335 2.457366 AGACTTAACAGACGGCCAAG 57.543 50.000 2.24 0.00 0.00 3.61
814 1369 8.524487 TCAAGTTCTACCTGTCTAGAAGAAATC 58.476 37.037 5.57 0.00 34.14 2.17
924 2146 3.815401 GGAGCATCAACAACAACACTAGT 59.185 43.478 0.00 0.00 36.25 2.57
926 2148 4.450976 AGCATCAACAACAACACTAGTCA 58.549 39.130 0.00 0.00 0.00 3.41
929 2151 4.875544 TCAACAACAACACTAGTCAAGC 57.124 40.909 0.00 0.00 0.00 4.01
932 2154 5.356751 TCAACAACAACACTAGTCAAGCAAT 59.643 36.000 0.00 0.00 0.00 3.56
933 2155 5.424121 ACAACAACACTAGTCAAGCAATC 57.576 39.130 0.00 0.00 0.00 2.67
935 2157 4.085357 ACAACACTAGTCAAGCAATCCA 57.915 40.909 0.00 0.00 0.00 3.41
936 2158 4.067896 ACAACACTAGTCAAGCAATCCAG 58.932 43.478 0.00 0.00 0.00 3.86
938 2160 3.931578 ACACTAGTCAAGCAATCCAGAC 58.068 45.455 0.00 0.00 0.00 3.51
939 2161 3.324846 ACACTAGTCAAGCAATCCAGACA 59.675 43.478 0.00 0.00 33.56 3.41
940 2162 3.931468 CACTAGTCAAGCAATCCAGACAG 59.069 47.826 0.00 0.00 33.56 3.51
941 2163 3.580458 ACTAGTCAAGCAATCCAGACAGT 59.420 43.478 0.00 0.00 33.56 3.55
942 2164 4.772624 ACTAGTCAAGCAATCCAGACAGTA 59.227 41.667 0.00 0.00 33.56 2.74
943 2165 4.623932 AGTCAAGCAATCCAGACAGTAA 57.376 40.909 0.00 0.00 33.56 2.24
944 2166 4.973168 AGTCAAGCAATCCAGACAGTAAA 58.027 39.130 0.00 0.00 33.56 2.01
945 2167 4.999950 AGTCAAGCAATCCAGACAGTAAAG 59.000 41.667 0.00 0.00 33.56 1.85
946 2168 3.753272 TCAAGCAATCCAGACAGTAAAGC 59.247 43.478 0.00 0.00 0.00 3.51
947 2169 2.716217 AGCAATCCAGACAGTAAAGCC 58.284 47.619 0.00 0.00 0.00 4.35
948 2170 2.307098 AGCAATCCAGACAGTAAAGCCT 59.693 45.455 0.00 0.00 0.00 4.58
949 2171 2.680339 GCAATCCAGACAGTAAAGCCTC 59.320 50.000 0.00 0.00 0.00 4.70
950 2172 3.274288 CAATCCAGACAGTAAAGCCTCC 58.726 50.000 0.00 0.00 0.00 4.30
951 2173 2.327325 TCCAGACAGTAAAGCCTCCT 57.673 50.000 0.00 0.00 0.00 3.69
952 2174 2.180276 TCCAGACAGTAAAGCCTCCTC 58.820 52.381 0.00 0.00 0.00 3.71
953 2175 1.134965 CCAGACAGTAAAGCCTCCTCG 60.135 57.143 0.00 0.00 0.00 4.63
954 2176 1.134965 CAGACAGTAAAGCCTCCTCGG 60.135 57.143 0.00 0.00 0.00 4.63
955 2177 0.175989 GACAGTAAAGCCTCCTCGGG 59.824 60.000 0.00 0.00 0.00 5.14
963 2185 2.501610 CCTCCTCGGGCAGTTAGC 59.498 66.667 0.00 0.00 44.65 3.09
977 2199 4.954875 GCAGTTAGCAATCCAGATAGTCT 58.045 43.478 0.00 0.00 44.79 3.24
978 2200 6.090483 GCAGTTAGCAATCCAGATAGTCTA 57.910 41.667 0.00 0.00 44.79 2.59
979 2201 6.155827 GCAGTTAGCAATCCAGATAGTCTAG 58.844 44.000 0.00 0.00 44.79 2.43
980 2202 6.239176 GCAGTTAGCAATCCAGATAGTCTAGT 60.239 42.308 0.00 0.00 44.79 2.57
981 2203 7.367285 CAGTTAGCAATCCAGATAGTCTAGTC 58.633 42.308 0.00 0.00 0.00 2.59
982 2204 6.205853 AGTTAGCAATCCAGATAGTCTAGTCG 59.794 42.308 0.00 0.00 0.00 4.18
983 2205 3.823873 AGCAATCCAGATAGTCTAGTCGG 59.176 47.826 0.00 0.00 0.00 4.79
984 2206 3.612955 GCAATCCAGATAGTCTAGTCGGC 60.613 52.174 0.00 0.00 0.00 5.54
985 2207 3.510531 ATCCAGATAGTCTAGTCGGCA 57.489 47.619 0.00 0.00 0.00 5.69
986 2208 2.852449 TCCAGATAGTCTAGTCGGCAG 58.148 52.381 0.00 0.00 0.00 4.85
1026 2248 0.179067 TGGAGTTCGGCTCGTGTTTT 60.179 50.000 2.71 0.00 45.03 2.43
1035 2257 2.203084 TCGTGTTTTGGCGGCAGA 60.203 55.556 12.87 4.48 0.00 4.26
1217 2439 4.509737 GGCCTACCACGACGGCTC 62.510 72.222 0.00 0.00 43.29 4.70
1289 2518 2.331451 GCAACACAAGGCCGACAC 59.669 61.111 0.00 0.00 0.00 3.67
1309 2538 0.677731 CGAGATGCCAAAGCTTCCCA 60.678 55.000 0.00 0.00 42.66 4.37
1329 2558 1.822186 GTGGCACAACAAGGTCGGT 60.822 57.895 13.86 0.00 44.16 4.69
1376 2605 3.307674 GAGAAGCTGCTGATACTGATCG 58.692 50.000 0.00 0.00 34.49 3.69
1423 2652 1.024271 CCAATATCCAACCAGCACCG 58.976 55.000 0.00 0.00 0.00 4.94
1429 2658 2.498056 CCAACCAGCACCGCCTTTT 61.498 57.895 0.00 0.00 0.00 2.27
1432 2661 0.109723 AACCAGCACCGCCTTTTCTA 59.890 50.000 0.00 0.00 0.00 2.10
1443 2672 5.015515 ACCGCCTTTTCTACTACTACTCTT 58.984 41.667 0.00 0.00 0.00 2.85
1462 2691 4.794334 TCTTGGAAGGTACTAGCTAGAGG 58.206 47.826 27.45 1.98 38.49 3.69
1487 2716 2.035449 TCAACGTTAGCTATGCGGCTAT 59.965 45.455 18.26 0.00 43.21 2.97
1498 2727 2.882927 TGCGGCTATTACACCACTAG 57.117 50.000 0.00 0.00 0.00 2.57
1499 2728 2.104967 TGCGGCTATTACACCACTAGT 58.895 47.619 0.00 0.00 0.00 2.57
1500 2729 2.100252 TGCGGCTATTACACCACTAGTC 59.900 50.000 0.00 0.00 0.00 2.59
1501 2730 2.100252 GCGGCTATTACACCACTAGTCA 59.900 50.000 0.00 0.00 0.00 3.41
1502 2731 3.429822 GCGGCTATTACACCACTAGTCAA 60.430 47.826 0.00 0.00 0.00 3.18
1503 2732 4.360563 CGGCTATTACACCACTAGTCAAG 58.639 47.826 0.00 0.00 0.00 3.02
1504 2733 4.694339 GGCTATTACACCACTAGTCAAGG 58.306 47.826 0.00 0.00 0.00 3.61
1505 2734 4.161754 GGCTATTACACCACTAGTCAAGGT 59.838 45.833 0.00 0.00 35.65 3.50
1515 2750 4.100189 CCACTAGTCAAGGTTAGCTAGCAT 59.900 45.833 18.83 4.67 35.58 3.79
1532 2767 2.029623 GCATGGCAGTTCATCAATCCT 58.970 47.619 0.00 0.00 0.00 3.24
1566 2801 2.888212 ACACTTCCTCTGCTTCTCTCT 58.112 47.619 0.00 0.00 0.00 3.10
1598 2833 6.263168 TCTGTTTTTCCTCTGTTTTCTCATCC 59.737 38.462 0.00 0.00 0.00 3.51
1606 2841 3.005554 CTGTTTTCTCATCCGCTGACAT 58.994 45.455 0.00 0.00 0.00 3.06
1624 2859 2.629617 ACATTGAAAAGGCACCTGGAAG 59.370 45.455 0.00 0.00 0.00 3.46
1627 2862 0.884514 GAAAAGGCACCTGGAAGAGC 59.115 55.000 0.00 0.00 34.07 4.09
1658 2893 1.489560 GCGAACCAGGGGGCCTATAT 61.490 60.000 0.84 0.00 37.90 0.86
1758 2993 7.594714 TCTGTTTCTGTAGTTGCTTCTACTAG 58.405 38.462 15.71 12.30 40.39 2.57
1787 3022 6.771188 AGTTGAGACACTTATTTTGAGACG 57.229 37.500 0.00 0.00 0.00 4.18
1789 3024 5.462530 TGAGACACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 0.00 4.69
1790 3025 5.470368 TGAGACACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
1804 3039 3.619419 AGACGGAGGGAGTACTACTTTC 58.381 50.000 4.77 3.46 0.00 2.62
1831 3098 5.766670 TGTGAAAGAAAGCATTGTGAGATCT 59.233 36.000 0.00 0.00 0.00 2.75
1866 3133 5.295152 CCATTTCTGCTTTCTTCTTGCTTT 58.705 37.500 0.00 0.00 0.00 3.51
1873 3140 3.636381 CTTTCTTCTTGCTTTGCTGTCC 58.364 45.455 0.00 0.00 0.00 4.02
1920 3187 6.724263 TGTGTAGTTGCTTGTGATTTAGTTG 58.276 36.000 0.00 0.00 0.00 3.16
1933 3200 4.391830 TGATTTAGTTGTAGCTGCTTTCGG 59.608 41.667 7.79 0.00 0.00 4.30
1944 3211 2.351738 GCTGCTTTCGGCTTGTATTGTT 60.352 45.455 0.00 0.00 41.36 2.83
1954 3221 9.562583 TTTCGGCTTGTATTGTTTATAATCAAC 57.437 29.630 10.43 2.29 0.00 3.18
2070 3337 3.118847 TCACTTGCCAAGCATGTTTTTGA 60.119 39.130 3.88 0.00 42.78 2.69
2073 3340 4.099266 ACTTGCCAAGCATGTTTTTGACTA 59.901 37.500 3.88 0.00 42.78 2.59
2080 3347 3.636300 AGCATGTTTTTGACTAGTTGGCA 59.364 39.130 0.00 0.00 0.00 4.92
2081 3348 3.735746 GCATGTTTTTGACTAGTTGGCAC 59.264 43.478 0.00 0.00 30.21 5.01
2082 3349 4.499696 GCATGTTTTTGACTAGTTGGCACT 60.500 41.667 0.00 0.00 36.99 4.40
2083 3350 5.591099 CATGTTTTTGACTAGTTGGCACTT 58.409 37.500 0.00 0.00 34.06 3.16
2084 3351 4.992688 TGTTTTTGACTAGTTGGCACTTG 58.007 39.130 0.00 0.00 34.06 3.16
2085 3352 4.142271 TGTTTTTGACTAGTTGGCACTTGG 60.142 41.667 0.00 0.00 34.06 3.61
2086 3353 1.604604 TTGACTAGTTGGCACTTGGC 58.395 50.000 0.00 0.00 43.74 4.52
2093 3360 2.437449 TGGCACTTGGCAGCTCAT 59.563 55.556 0.49 0.00 46.12 2.90
2100 3367 1.905215 ACTTGGCAGCTCATCTACTGT 59.095 47.619 0.00 0.00 36.26 3.55
2102 3369 2.391616 TGGCAGCTCATCTACTGTTG 57.608 50.000 0.00 0.00 36.26 3.33
2103 3370 1.012841 GGCAGCTCATCTACTGTTGC 58.987 55.000 0.00 0.00 36.26 4.17
2126 3393 2.560542 ACAGAACTCAGCACGATCTTCT 59.439 45.455 0.00 0.00 0.00 2.85
2130 3397 4.095782 AGAACTCAGCACGATCTTCTACTC 59.904 45.833 0.00 0.00 0.00 2.59
2189 3888 5.653769 CCAAAGATAATGACTGTTCACCCAT 59.346 40.000 0.00 0.00 33.38 4.00
2192 3891 7.865706 AAGATAATGACTGTTCACCCATTAC 57.134 36.000 0.00 0.00 35.23 1.89
2261 3960 2.046892 ATGCACGAGAAAGCCGCT 60.047 55.556 0.00 0.00 0.00 5.52
2269 3968 1.201343 GAGAAAGCCGCTCATACGTC 58.799 55.000 0.00 0.00 32.67 4.34
2278 3977 1.787155 CGCTCATACGTCTATGCAACC 59.213 52.381 0.00 0.00 31.18 3.77
2310 4009 3.862142 TTTTTGCGGGGTCATGCA 58.138 50.000 0.00 0.00 39.81 3.96
2311 4010 2.360138 TTTTTGCGGGGTCATGCAT 58.640 47.368 0.00 0.00 41.42 3.96
2312 4011 0.683973 TTTTTGCGGGGTCATGCATT 59.316 45.000 0.00 0.00 41.42 3.56
2313 4012 0.037512 TTTTGCGGGGTCATGCATTG 60.038 50.000 0.00 0.00 41.42 2.82
2314 4013 1.886253 TTTGCGGGGTCATGCATTGG 61.886 55.000 0.00 0.00 41.42 3.16
2315 4014 2.440065 GCGGGGTCATGCATTGGA 60.440 61.111 0.00 0.00 0.00 3.53
2316 4015 2.051518 GCGGGGTCATGCATTGGAA 61.052 57.895 0.00 0.00 0.00 3.53
2317 4016 1.394266 GCGGGGTCATGCATTGGAAT 61.394 55.000 0.00 0.00 0.00 3.01
2318 4017 1.113788 CGGGGTCATGCATTGGAATT 58.886 50.000 0.00 0.00 0.00 2.17
2319 4018 1.481772 CGGGGTCATGCATTGGAATTT 59.518 47.619 0.00 0.00 0.00 1.82
2320 4019 2.093553 CGGGGTCATGCATTGGAATTTT 60.094 45.455 0.00 0.00 0.00 1.82
2329 4028 5.987777 TGCATTGGAATTTTGACAACAAG 57.012 34.783 0.00 0.00 37.32 3.16
2330 4029 5.426504 TGCATTGGAATTTTGACAACAAGT 58.573 33.333 0.00 0.00 37.32 3.16
2351 4050 0.888619 GGGGTTAAAAGCAGCCAGAC 59.111 55.000 0.00 0.00 33.04 3.51
2376 4075 6.599244 CACCCTAGATAGACAAATTTTCTGCA 59.401 38.462 11.04 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.966543 CAACAACTCCCCCGCCCT 61.967 66.667 0.00 0.00 0.00 5.19
8 9 1.616159 ATGTTTCAACAACTCCCCCG 58.384 50.000 0.00 0.00 43.03 5.73
192 193 6.040166 CGGGTACATAAGTTATCAGGTGTACT 59.960 42.308 17.19 0.00 40.82 2.73
260 265 7.994334 TGCTATTTACATAGAAATTACCGGGTT 59.006 33.333 4.31 0.00 35.20 4.11
384 939 0.245266 TAGCAACAGATCCGCACGAA 59.755 50.000 0.00 0.00 0.00 3.85
413 968 2.038033 GGACTGTGCTAACCACCAGTAA 59.962 50.000 0.00 0.00 44.01 2.24
414 969 1.621814 GGACTGTGCTAACCACCAGTA 59.378 52.381 0.00 0.00 44.01 2.74
445 1000 6.446318 TCAACACCTTCAAAACATAGAATGC 58.554 36.000 0.00 0.00 0.00 3.56
451 1006 7.502226 AGAAGACATCAACACCTTCAAAACATA 59.498 33.333 0.00 0.00 37.92 2.29
459 1014 4.646572 AGGAAGAAGACATCAACACCTTC 58.353 43.478 0.00 0.00 36.26 3.46
460 1015 4.713792 AGGAAGAAGACATCAACACCTT 57.286 40.909 0.00 0.00 0.00 3.50
461 1016 4.141390 ACAAGGAAGAAGACATCAACACCT 60.141 41.667 0.00 0.00 0.00 4.00
485 1040 3.925090 CCTCCCGCCGGTGGATAC 61.925 72.222 35.83 0.00 44.43 2.24
497 1052 2.341101 TTCTCTCACGCGACCTCCC 61.341 63.158 15.93 0.00 0.00 4.30
499 1054 0.179184 GAGTTCTCTCACGCGACCTC 60.179 60.000 15.93 1.82 40.18 3.85
505 1060 0.733223 GGGAACGAGTTCTCTCACGC 60.733 60.000 14.62 0.00 40.44 5.34
537 1092 0.820871 AGAAGTCGGACCTGAGATGC 59.179 55.000 4.14 0.00 0.00 3.91
558 1113 5.918011 GGATTATTTCGAGTTGTTTGTTGCA 59.082 36.000 0.00 0.00 0.00 4.08
569 1124 5.109903 CGAGTTCAAGGGATTATTTCGAGT 58.890 41.667 0.00 0.00 0.00 4.18
577 1132 3.008594 TCTTTGGCGAGTTCAAGGGATTA 59.991 43.478 0.00 0.00 0.00 1.75
584 1139 2.210116 GTGACTCTTTGGCGAGTTCAA 58.790 47.619 0.00 0.00 43.91 2.69
587 1142 0.759346 AGGTGACTCTTTGGCGAGTT 59.241 50.000 0.00 0.00 43.91 3.01
590 1145 1.336517 CGTTAGGTGACTCTTTGGCGA 60.337 52.381 0.00 0.00 43.67 5.54
591 1146 1.068474 CGTTAGGTGACTCTTTGGCG 58.932 55.000 0.00 0.00 43.67 5.69
593 1148 2.163818 TGCGTTAGGTGACTCTTTGG 57.836 50.000 0.00 0.00 43.67 3.28
596 1151 1.414919 TGGTTGCGTTAGGTGACTCTT 59.585 47.619 0.00 0.00 43.67 2.85
600 1155 2.611974 CAATGGTTGCGTTAGGTGAC 57.388 50.000 0.00 0.00 0.00 3.67
617 1172 1.824230 GCAATGTTAGGGTCATGGCAA 59.176 47.619 0.00 0.00 40.69 4.52
639 1194 4.778143 AATGGCCGGGTCAGCGAC 62.778 66.667 7.67 0.79 0.00 5.19
684 1239 8.447053 GGAAGATAGAATTGTTGAAGAAGACAC 58.553 37.037 0.00 0.00 0.00 3.67
687 1242 8.597167 TCAGGAAGATAGAATTGTTGAAGAAGA 58.403 33.333 0.00 0.00 0.00 2.87
692 1247 6.319658 GGCATCAGGAAGATAGAATTGTTGAA 59.680 38.462 0.00 0.00 34.43 2.69
695 1250 5.136105 GGGCATCAGGAAGATAGAATTGTT 58.864 41.667 0.00 0.00 34.43 2.83
700 1255 1.694150 CGGGGCATCAGGAAGATAGAA 59.306 52.381 0.00 0.00 34.43 2.10
709 1264 2.045045 TTGAAGCGGGGCATCAGG 60.045 61.111 0.00 0.00 37.56 3.86
711 1266 1.675310 CTGTTGAAGCGGGGCATCA 60.675 57.895 0.00 0.00 34.44 3.07
727 1282 0.670706 TCGGAATCTGAGGATCGCTG 59.329 55.000 0.00 0.00 38.61 5.18
729 1284 1.000283 ACATCGGAATCTGAGGATCGC 60.000 52.381 10.96 0.00 38.61 4.58
738 1293 2.684881 GTCATGGCAAACATCGGAATCT 59.315 45.455 0.00 0.00 37.84 2.40
756 1311 2.547218 GGCCGTCTGTTAAGTCTTGTCA 60.547 50.000 0.00 0.00 0.00 3.58
814 1369 0.673985 TCACAGACTCCTGGAACACG 59.326 55.000 0.00 0.00 44.60 4.49
865 1420 3.516578 GCAGACGGCAAGACTAACT 57.483 52.632 0.00 0.00 43.97 2.24
924 2146 3.753272 GCTTTACTGTCTGGATTGCTTGA 59.247 43.478 0.00 0.00 0.00 3.02
926 2148 3.084786 GGCTTTACTGTCTGGATTGCTT 58.915 45.455 0.00 0.00 0.00 3.91
929 2151 3.054802 AGGAGGCTTTACTGTCTGGATTG 60.055 47.826 0.00 0.00 0.00 2.67
932 2154 2.180276 GAGGAGGCTTTACTGTCTGGA 58.820 52.381 0.00 0.00 0.00 3.86
933 2155 1.134965 CGAGGAGGCTTTACTGTCTGG 60.135 57.143 0.00 0.00 0.00 3.86
935 2157 1.187087 CCGAGGAGGCTTTACTGTCT 58.813 55.000 0.00 0.00 0.00 3.41
936 2158 0.175989 CCCGAGGAGGCTTTACTGTC 59.824 60.000 0.00 0.00 39.21 3.51
946 2168 1.899437 TTGCTAACTGCCCGAGGAGG 61.899 60.000 0.00 0.00 42.00 4.30
947 2169 0.179000 ATTGCTAACTGCCCGAGGAG 59.821 55.000 0.00 0.00 42.00 3.69
948 2170 0.178068 GATTGCTAACTGCCCGAGGA 59.822 55.000 0.00 0.00 42.00 3.71
949 2171 0.815615 GGATTGCTAACTGCCCGAGG 60.816 60.000 0.00 0.00 42.00 4.63
950 2172 0.107703 TGGATTGCTAACTGCCCGAG 60.108 55.000 0.00 0.00 42.00 4.63
951 2173 0.107703 CTGGATTGCTAACTGCCCGA 60.108 55.000 0.00 0.00 42.00 5.14
952 2174 0.107703 TCTGGATTGCTAACTGCCCG 60.108 55.000 0.00 0.00 42.00 6.13
953 2175 2.355010 ATCTGGATTGCTAACTGCCC 57.645 50.000 0.00 0.00 42.00 5.36
954 2176 4.061596 GACTATCTGGATTGCTAACTGCC 58.938 47.826 0.00 0.00 42.00 4.85
955 2177 4.954875 AGACTATCTGGATTGCTAACTGC 58.045 43.478 0.00 0.00 43.25 4.40
956 2178 7.283625 ACTAGACTATCTGGATTGCTAACTG 57.716 40.000 0.00 0.00 0.00 3.16
957 2179 6.205853 CGACTAGACTATCTGGATTGCTAACT 59.794 42.308 0.00 0.00 0.00 2.24
958 2180 6.375377 CGACTAGACTATCTGGATTGCTAAC 58.625 44.000 0.00 0.00 0.00 2.34
959 2181 5.473846 CCGACTAGACTATCTGGATTGCTAA 59.526 44.000 0.00 0.00 0.00 3.09
960 2182 5.004448 CCGACTAGACTATCTGGATTGCTA 58.996 45.833 0.00 0.00 0.00 3.49
961 2183 3.823873 CCGACTAGACTATCTGGATTGCT 59.176 47.826 0.00 0.00 0.00 3.91
962 2184 3.612955 GCCGACTAGACTATCTGGATTGC 60.613 52.174 0.00 0.00 0.00 3.56
963 2185 3.570125 TGCCGACTAGACTATCTGGATTG 59.430 47.826 0.00 0.00 0.00 2.67
964 2186 3.823873 CTGCCGACTAGACTATCTGGATT 59.176 47.826 0.00 0.00 0.00 3.01
965 2187 3.417101 CTGCCGACTAGACTATCTGGAT 58.583 50.000 0.00 0.00 0.00 3.41
966 2188 2.852449 CTGCCGACTAGACTATCTGGA 58.148 52.381 0.00 0.00 0.00 3.86
967 2189 1.268352 GCTGCCGACTAGACTATCTGG 59.732 57.143 0.00 0.00 0.00 3.86
968 2190 2.031245 CAGCTGCCGACTAGACTATCTG 60.031 54.545 0.00 0.00 0.00 2.90
969 2191 2.226330 CAGCTGCCGACTAGACTATCT 58.774 52.381 0.00 0.00 0.00 1.98
970 2192 1.950909 ACAGCTGCCGACTAGACTATC 59.049 52.381 15.27 0.00 0.00 2.08
971 2193 1.950909 GACAGCTGCCGACTAGACTAT 59.049 52.381 15.27 0.00 0.00 2.12
972 2194 1.339727 TGACAGCTGCCGACTAGACTA 60.340 52.381 15.27 0.00 0.00 2.59
973 2195 0.609406 TGACAGCTGCCGACTAGACT 60.609 55.000 15.27 0.00 0.00 3.24
974 2196 0.456995 GTGACAGCTGCCGACTAGAC 60.457 60.000 15.27 0.00 0.00 2.59
975 2197 1.595993 GGTGACAGCTGCCGACTAGA 61.596 60.000 15.27 0.00 0.00 2.43
976 2198 1.153745 GGTGACAGCTGCCGACTAG 60.154 63.158 15.27 0.00 0.00 2.57
977 2199 1.468506 TTGGTGACAGCTGCCGACTA 61.469 55.000 15.27 2.80 44.54 2.59
978 2200 2.324014 TTTGGTGACAGCTGCCGACT 62.324 55.000 15.27 0.00 44.54 4.18
979 2201 1.845809 CTTTGGTGACAGCTGCCGAC 61.846 60.000 15.27 7.74 44.54 4.79
980 2202 1.597854 CTTTGGTGACAGCTGCCGA 60.598 57.895 15.27 3.94 44.54 5.54
981 2203 1.165907 TTCTTTGGTGACAGCTGCCG 61.166 55.000 15.27 0.00 44.54 5.69
982 2204 1.068055 CATTCTTTGGTGACAGCTGCC 60.068 52.381 15.27 7.86 44.54 4.85
983 2205 1.610522 ACATTCTTTGGTGACAGCTGC 59.389 47.619 15.27 7.45 44.54 5.25
984 2206 2.606308 GCACATTCTTTGGTGACAGCTG 60.606 50.000 13.48 13.48 44.54 4.24
985 2207 1.610522 GCACATTCTTTGGTGACAGCT 59.389 47.619 6.17 0.00 44.54 4.24
986 2208 1.610522 AGCACATTCTTTGGTGACAGC 59.389 47.619 0.00 0.00 44.54 4.40
1035 2257 4.107051 CCGCCGTAGTCGTCCGTT 62.107 66.667 0.00 0.00 35.01 4.44
1060 2282 1.298014 GCTCCTCCCTGTGGTTGAG 59.702 63.158 0.00 0.00 35.09 3.02
1061 2283 1.461268 TGCTCCTCCCTGTGGTTGA 60.461 57.895 0.00 0.00 0.00 3.18
1106 2328 3.692406 GGTTCCCTCTGCGGTCGT 61.692 66.667 0.00 0.00 0.00 4.34
1135 2357 2.671619 CGGTTTGTGGCCATCGGT 60.672 61.111 9.72 0.00 0.00 4.69
1216 2438 4.150994 GTGGTTGGCTTTCCACGA 57.849 55.556 9.59 0.00 43.33 4.35
1219 2441 2.192861 CAGCGTGGTTGGCTTTCCA 61.193 57.895 0.00 0.00 39.08 3.53
1289 2518 1.379642 GGGAAGCTTTGGCATCTCGG 61.380 60.000 0.00 0.00 41.70 4.63
1309 2538 2.177580 CGACCTTGTTGTGCCACGT 61.178 57.895 0.00 0.00 0.00 4.49
1329 2558 4.771356 GCTGCGTAGGCGTCGTCA 62.771 66.667 1.76 4.53 44.10 4.35
1342 2571 4.742201 TTCTCGGAGGCACGCTGC 62.742 66.667 4.96 1.92 44.08 5.25
1355 2584 3.243367 ACGATCAGTATCAGCAGCTTCTC 60.243 47.826 0.00 0.00 31.93 2.87
1376 2605 1.743995 ATGGCGGCGTTGTTCCTAC 60.744 57.895 9.37 0.00 0.00 3.18
1407 2636 1.152963 GGCGGTGCTGGTTGGATAT 60.153 57.895 0.00 0.00 0.00 1.63
1423 2652 6.527057 TCCAAGAGTAGTAGTAGAAAAGGC 57.473 41.667 0.00 0.00 0.00 4.35
1429 2658 7.507797 AGTACCTTCCAAGAGTAGTAGTAGA 57.492 40.000 0.00 0.00 0.00 2.59
1432 2661 6.069498 AGCTAGTACCTTCCAAGAGTAGTAGT 60.069 42.308 18.85 7.93 37.62 2.73
1443 2672 4.725810 ACTACCTCTAGCTAGTACCTTCCA 59.274 45.833 20.10 0.00 0.00 3.53
1462 2691 2.787680 CCGCATAGCTAACGTTGACTAC 59.212 50.000 11.99 1.21 0.00 2.73
1487 2716 4.836736 AGCTAACCTTGACTAGTGGTGTAA 59.163 41.667 0.00 0.00 33.89 2.41
1498 2727 1.943340 GCCATGCTAGCTAACCTTGAC 59.057 52.381 17.23 0.00 0.00 3.18
1499 2728 1.559219 TGCCATGCTAGCTAACCTTGA 59.441 47.619 17.23 0.00 0.00 3.02
1500 2729 1.945394 CTGCCATGCTAGCTAACCTTG 59.055 52.381 17.23 4.14 0.00 3.61
1501 2730 1.561542 ACTGCCATGCTAGCTAACCTT 59.438 47.619 17.23 0.00 0.00 3.50
1502 2731 1.207791 ACTGCCATGCTAGCTAACCT 58.792 50.000 17.23 0.00 0.00 3.50
1503 2732 1.943340 GAACTGCCATGCTAGCTAACC 59.057 52.381 17.23 2.80 0.00 2.85
1504 2733 2.632377 TGAACTGCCATGCTAGCTAAC 58.368 47.619 17.23 3.53 0.00 2.34
1505 2734 3.118298 TGATGAACTGCCATGCTAGCTAA 60.118 43.478 17.23 0.00 0.00 3.09
1515 2750 2.621407 GGGAAGGATTGATGAACTGCCA 60.621 50.000 0.00 0.00 29.64 4.92
1532 2767 2.374170 GGAAGTGTTTAGGGACAGGGAA 59.626 50.000 0.00 0.00 0.00 3.97
1566 2801 3.391296 ACAGAGGAAAAACAGAGCTACCA 59.609 43.478 0.00 0.00 0.00 3.25
1598 2833 1.666888 GGTGCCTTTTCAATGTCAGCG 60.667 52.381 0.00 0.00 0.00 5.18
1606 2841 2.586425 CTCTTCCAGGTGCCTTTTCAA 58.414 47.619 0.00 0.00 0.00 2.69
1627 2862 2.442188 GGTTCGCGGCTCTTACACG 61.442 63.158 6.13 0.00 0.00 4.49
1640 2875 1.946984 TATATAGGCCCCCTGGTTCG 58.053 55.000 0.00 0.00 34.61 3.95
1652 2887 7.768120 GTGGAGGCTCTGATCAAAATATATAGG 59.232 40.741 15.23 0.00 0.00 2.57
1658 2893 3.197766 ACGTGGAGGCTCTGATCAAAATA 59.802 43.478 15.23 0.00 0.00 1.40
1787 3022 2.099427 CAGCGAAAGTAGTACTCCCTCC 59.901 54.545 2.58 0.00 0.00 4.30
1789 3024 2.492484 CACAGCGAAAGTAGTACTCCCT 59.508 50.000 2.58 0.00 0.00 4.20
1790 3025 2.490903 TCACAGCGAAAGTAGTACTCCC 59.509 50.000 2.58 0.00 0.00 4.30
1804 3039 2.722629 CACAATGCTTTCTTTCACAGCG 59.277 45.455 0.00 0.00 36.24 5.18
1831 3098 3.091545 GCAGAAATGGGGACTCATTTGA 58.908 45.455 14.41 0.00 44.48 2.69
1880 3147 6.229936 ACTACACAAACAGACTGGTAAGAA 57.770 37.500 7.51 0.00 0.00 2.52
1881 3148 5.864418 ACTACACAAACAGACTGGTAAGA 57.136 39.130 7.51 0.00 0.00 2.10
1882 3149 5.277345 GCAACTACACAAACAGACTGGTAAG 60.277 44.000 7.51 0.00 0.00 2.34
1941 3208 9.677567 GTGCTTTCTTTGAGTTGATTATAAACA 57.322 29.630 0.00 0.00 0.00 2.83
1944 3211 9.066892 ACAGTGCTTTCTTTGAGTTGATTATAA 57.933 29.630 0.00 0.00 0.00 0.98
1954 3221 6.069684 AGATTTGACAGTGCTTTCTTTGAG 57.930 37.500 0.00 0.00 0.00 3.02
1958 3225 5.371526 TCTGAGATTTGACAGTGCTTTCTT 58.628 37.500 0.00 0.00 35.84 2.52
2018 3285 9.046296 GTGATTGAACTAAAGAAGTCAGAGAAA 57.954 33.333 0.00 0.00 37.50 2.52
2070 3337 0.890996 GCTGCCAAGTGCCAACTAGT 60.891 55.000 0.00 0.00 40.16 2.57
2073 3340 1.900498 GAGCTGCCAAGTGCCAACT 60.900 57.895 0.00 0.00 40.16 3.16
2080 3347 1.905215 ACAGTAGATGAGCTGCCAAGT 59.095 47.619 0.00 0.00 36.26 3.16
2081 3348 2.676839 CAACAGTAGATGAGCTGCCAAG 59.323 50.000 0.00 0.00 36.26 3.61
2082 3349 2.703416 CAACAGTAGATGAGCTGCCAA 58.297 47.619 0.00 0.00 36.26 4.52
2083 3350 1.676916 GCAACAGTAGATGAGCTGCCA 60.677 52.381 0.00 0.00 36.26 4.92
2084 3351 1.012841 GCAACAGTAGATGAGCTGCC 58.987 55.000 0.00 0.00 36.26 4.85
2085 3352 2.021355 AGCAACAGTAGATGAGCTGC 57.979 50.000 0.00 0.00 40.52 5.25
2086 3353 4.111198 CTGTAGCAACAGTAGATGAGCTG 58.889 47.826 0.00 0.00 46.76 4.24
2087 3354 4.383850 CTGTAGCAACAGTAGATGAGCT 57.616 45.455 0.00 0.00 46.76 4.09
2102 3369 2.159310 AGATCGTGCTGAGTTCTGTAGC 60.159 50.000 0.00 0.00 37.93 3.58
2103 3370 3.773860 AGATCGTGCTGAGTTCTGTAG 57.226 47.619 0.00 0.00 0.00 2.74
2114 3381 4.155099 CCATATCGAGTAGAAGATCGTGCT 59.845 45.833 0.00 0.00 39.86 4.40
2159 3858 8.564574 GTGAACAGTCATTATCTTTGGTAAACA 58.435 33.333 0.00 0.00 35.80 2.83
2172 3871 7.148323 CGAAATGTAATGGGTGAACAGTCATTA 60.148 37.037 0.00 0.00 35.80 1.90
2293 3992 0.683973 AATGCATGACCCCGCAAAAA 59.316 45.000 0.00 0.00 42.37 1.94
2294 3993 0.037512 CAATGCATGACCCCGCAAAA 60.038 50.000 0.00 0.00 42.37 2.44
2295 3994 1.590665 CAATGCATGACCCCGCAAA 59.409 52.632 0.00 0.00 42.37 3.68
2296 3995 2.349672 CCAATGCATGACCCCGCAA 61.350 57.895 0.00 0.00 42.37 4.85
2297 3996 2.755064 CCAATGCATGACCCCGCA 60.755 61.111 0.00 0.00 43.45 5.69
2298 3997 1.394266 ATTCCAATGCATGACCCCGC 61.394 55.000 0.00 0.00 0.00 6.13
2299 3998 1.113788 AATTCCAATGCATGACCCCG 58.886 50.000 0.00 0.00 0.00 5.73
2300 3999 3.055240 TCAAAATTCCAATGCATGACCCC 60.055 43.478 0.00 0.00 0.00 4.95
2301 4000 3.934579 GTCAAAATTCCAATGCATGACCC 59.065 43.478 0.00 0.00 31.81 4.46
2302 4001 4.567971 TGTCAAAATTCCAATGCATGACC 58.432 39.130 0.00 0.00 35.91 4.02
2303 4002 5.466058 TGTTGTCAAAATTCCAATGCATGAC 59.534 36.000 0.00 1.76 36.97 3.06
2304 4003 5.608449 TGTTGTCAAAATTCCAATGCATGA 58.392 33.333 0.00 0.00 0.00 3.07
2305 4004 5.926214 TGTTGTCAAAATTCCAATGCATG 57.074 34.783 0.00 0.00 0.00 4.06
2306 4005 6.056884 ACTTGTTGTCAAAATTCCAATGCAT 58.943 32.000 0.00 0.00 32.87 3.96
2307 4006 5.426504 ACTTGTTGTCAAAATTCCAATGCA 58.573 33.333 0.00 0.00 32.87 3.96
2308 4007 5.989551 ACTTGTTGTCAAAATTCCAATGC 57.010 34.783 0.00 0.00 32.87 3.56
2309 4008 6.238429 CCCAACTTGTTGTCAAAATTCCAATG 60.238 38.462 11.82 0.00 32.87 2.82
2310 4009 5.821995 CCCAACTTGTTGTCAAAATTCCAAT 59.178 36.000 11.82 0.00 32.87 3.16
2311 4010 5.181748 CCCAACTTGTTGTCAAAATTCCAA 58.818 37.500 11.82 0.00 32.87 3.53
2312 4011 4.383552 CCCCAACTTGTTGTCAAAATTCCA 60.384 41.667 11.82 0.00 32.87 3.53
2313 4012 4.126437 CCCCAACTTGTTGTCAAAATTCC 58.874 43.478 11.82 0.00 32.87 3.01
2314 4013 4.765273 ACCCCAACTTGTTGTCAAAATTC 58.235 39.130 11.82 0.00 32.87 2.17
2315 4014 4.835284 ACCCCAACTTGTTGTCAAAATT 57.165 36.364 11.82 0.00 32.87 1.82
2316 4015 4.835284 AACCCCAACTTGTTGTCAAAAT 57.165 36.364 11.82 0.00 32.87 1.82
2317 4016 5.740290 TTAACCCCAACTTGTTGTCAAAA 57.260 34.783 11.82 0.00 32.87 2.44
2318 4017 5.740290 TTTAACCCCAACTTGTTGTCAAA 57.260 34.783 11.82 3.19 32.87 2.69
2319 4018 5.725362 CTTTTAACCCCAACTTGTTGTCAA 58.275 37.500 11.82 0.00 0.00 3.18
2320 4019 4.382147 GCTTTTAACCCCAACTTGTTGTCA 60.382 41.667 11.82 0.00 0.00 3.58
2329 4028 1.000843 CTGGCTGCTTTTAACCCCAAC 59.999 52.381 0.00 0.00 0.00 3.77
2330 4029 1.133325 TCTGGCTGCTTTTAACCCCAA 60.133 47.619 0.00 0.00 0.00 4.12
2351 4050 6.599244 TGCAGAAAATTTGTCTATCTAGGGTG 59.401 38.462 0.00 0.00 0.00 4.61
2376 4075 8.103305 TCTGTCACTTTATTCTCTAATTTGCCT 58.897 33.333 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.