Multiple sequence alignment - TraesCS3B01G059900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G059900 chr3B 100.000 2594 0 0 1 2594 31787992 31790585 0.000000e+00 4791.0
1 TraesCS3B01G059900 chr3B 92.466 146 11 0 293 438 506156974 506156829 2.620000e-50 209.0
2 TraesCS3B01G059900 chr3D 89.351 1587 108 26 437 1975 19840379 19841952 0.000000e+00 1938.0
3 TraesCS3B01G059900 chr3D 86.887 938 75 11 1690 2594 19863669 19864591 0.000000e+00 1007.0
4 TraesCS3B01G059900 chr3D 90.587 733 56 7 971 1692 19861093 19861823 0.000000e+00 959.0
5 TraesCS3B01G059900 chr3D 91.315 403 35 0 2013 2415 19842261 19842663 3.770000e-153 551.0
6 TraesCS3B01G059900 chr3D 90.625 288 23 2 1 285 19840101 19840387 1.880000e-101 379.0
7 TraesCS3B01G059900 chr3D 84.247 146 20 3 2041 2185 19865162 19865305 3.480000e-29 139.0
8 TraesCS3B01G059900 chr3D 81.119 143 23 3 2043 2185 19842696 19842834 7.590000e-21 111.0
9 TraesCS3B01G059900 chr3A 91.454 1369 78 18 437 1772 27532009 27533371 0.000000e+00 1844.0
10 TraesCS3B01G059900 chr3A 91.197 284 22 3 3 285 27531736 27532017 1.460000e-102 383.0
11 TraesCS3B01G059900 chr5A 96.178 157 6 0 284 440 654424990 654424834 9.210000e-65 257.0
12 TraesCS3B01G059900 chr7A 91.892 111 9 0 318 428 19699061 19699171 3.460000e-34 156.0
13 TraesCS3B01G059900 chrUn 82.576 132 21 2 130 261 26729534 26729663 5.870000e-22 115.0
14 TraesCS3B01G059900 chr1A 86.364 88 12 0 136 223 507973429 507973516 2.120000e-16 97.1
15 TraesCS3B01G059900 chr6A 100.000 28 0 0 1124 1151 396962063 396962036 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G059900 chr3B 31787992 31790585 2593 False 4791.000000 4791 100.000000 1 2594 1 chr3B.!!$F1 2593
1 TraesCS3B01G059900 chr3D 19840101 19842834 2733 False 744.750000 1938 88.102500 1 2415 4 chr3D.!!$F1 2414
2 TraesCS3B01G059900 chr3D 19861093 19865305 4212 False 701.666667 1007 87.240333 971 2594 3 chr3D.!!$F2 1623
3 TraesCS3B01G059900 chr3A 27531736 27533371 1635 False 1113.500000 1844 91.325500 3 1772 2 chr3A.!!$F1 1769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 347 0.174845 CGAACGATACTGCCTTCCCA 59.825 55.0 0.0 0.0 0.0 4.37 F
432 437 0.247934 TCGTCGTGTGTATAGCAGCG 60.248 55.0 0.0 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1572 1629 0.035739 AAGGGTTTGCGTCACCGTAT 59.964 50.0 0.00 0.0 34.79 3.06 R
1723 3629 0.244178 TCCGCGTTACATAGCACACA 59.756 50.0 4.92 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.312079 ACTAGAAGCATTTCTCAAACTGCT 58.688 37.500 0.00 0.00 46.41 4.24
43 44 0.884704 AAACTGCTTGCACCGACGAT 60.885 50.000 0.00 0.00 0.00 3.73
64 65 0.523966 AAGAACGAGTCAGAGCTCCG 59.476 55.000 10.93 9.00 32.11 4.63
105 109 3.262915 AGCTCATGTGCTTCTAGGAACTT 59.737 43.478 16.33 0.00 40.93 2.66
129 134 8.574251 TTAGTACGTAGGAACACCAGTATTAA 57.426 34.615 0.00 0.00 0.00 1.40
179 184 1.813728 TTTCGGCCAATGCATGCACA 61.814 50.000 25.37 0.00 40.13 4.57
197 202 3.372206 GCACAACACTAGCTAATCACTGG 59.628 47.826 0.00 0.00 0.00 4.00
219 224 6.806217 TGGTGGATTAAATTCCTCCCTAAAA 58.194 36.000 11.84 0.00 45.12 1.52
253 258 0.462581 CCTACCATCGTGCACATGCT 60.463 55.000 18.64 9.47 42.66 3.79
264 269 1.814394 TGCACATGCTGTCCAGAAATC 59.186 47.619 5.31 0.00 42.66 2.17
276 281 2.693591 TCCAGAAATCGAGCTATTCCGT 59.306 45.455 0.00 0.00 0.00 4.69
277 282 3.132289 TCCAGAAATCGAGCTATTCCGTT 59.868 43.478 0.00 0.00 0.00 4.44
278 283 4.340097 TCCAGAAATCGAGCTATTCCGTTA 59.660 41.667 0.00 0.00 0.00 3.18
279 284 5.047847 CCAGAAATCGAGCTATTCCGTTAA 58.952 41.667 0.00 0.00 0.00 2.01
280 285 5.696724 CCAGAAATCGAGCTATTCCGTTAAT 59.303 40.000 0.00 0.00 0.00 1.40
281 286 6.128795 CCAGAAATCGAGCTATTCCGTTAATC 60.129 42.308 0.00 0.00 0.00 1.75
282 287 6.642950 CAGAAATCGAGCTATTCCGTTAATCT 59.357 38.462 0.00 0.00 0.00 2.40
283 288 7.808381 CAGAAATCGAGCTATTCCGTTAATCTA 59.192 37.037 0.00 0.00 0.00 1.98
284 289 8.358148 AGAAATCGAGCTATTCCGTTAATCTAA 58.642 33.333 0.00 0.00 0.00 2.10
285 290 7.870588 AATCGAGCTATTCCGTTAATCTAAC 57.129 36.000 0.00 0.00 35.37 2.34
300 305 8.369462 GTTAATCTAACGAAATTGCTTCACAG 57.631 34.615 0.00 0.00 33.17 3.66
301 306 6.801539 AATCTAACGAAATTGCTTCACAGA 57.198 33.333 0.00 0.00 33.17 3.41
302 307 5.591643 TCTAACGAAATTGCTTCACAGAC 57.408 39.130 0.00 0.00 33.17 3.51
303 308 2.949714 ACGAAATTGCTTCACAGACG 57.050 45.000 0.00 0.00 33.17 4.18
304 309 2.479837 ACGAAATTGCTTCACAGACGA 58.520 42.857 0.00 0.00 33.17 4.20
305 310 3.067106 ACGAAATTGCTTCACAGACGAT 58.933 40.909 0.00 0.00 33.17 3.73
306 311 3.498397 ACGAAATTGCTTCACAGACGATT 59.502 39.130 0.00 0.00 33.17 3.34
307 312 3.842428 CGAAATTGCTTCACAGACGATTG 59.158 43.478 0.00 0.00 33.17 2.67
308 313 4.611355 CGAAATTGCTTCACAGACGATTGT 60.611 41.667 0.00 0.00 33.17 2.71
309 314 4.836125 AATTGCTTCACAGACGATTGTT 57.164 36.364 0.00 0.00 0.00 2.83
310 315 3.878086 TTGCTTCACAGACGATTGTTC 57.122 42.857 0.00 0.00 0.00 3.18
311 316 2.143122 TGCTTCACAGACGATTGTTCC 58.857 47.619 0.00 0.00 0.00 3.62
312 317 1.126846 GCTTCACAGACGATTGTTCCG 59.873 52.381 0.00 0.00 0.00 4.30
313 318 1.126846 CTTCACAGACGATTGTTCCGC 59.873 52.381 0.00 0.00 0.00 5.54
314 319 0.669318 TCACAGACGATTGTTCCGCC 60.669 55.000 0.00 0.00 0.00 6.13
315 320 0.948623 CACAGACGATTGTTCCGCCA 60.949 55.000 0.00 0.00 0.00 5.69
316 321 0.949105 ACAGACGATTGTTCCGCCAC 60.949 55.000 0.00 0.00 0.00 5.01
317 322 1.736645 AGACGATTGTTCCGCCACG 60.737 57.895 0.00 0.00 0.00 4.94
318 323 1.735198 GACGATTGTTCCGCCACGA 60.735 57.895 0.00 0.00 0.00 4.35
319 324 1.952266 GACGATTGTTCCGCCACGAC 61.952 60.000 0.00 0.00 0.00 4.34
320 325 2.736682 CGATTGTTCCGCCACGACC 61.737 63.158 0.00 0.00 0.00 4.79
321 326 1.375523 GATTGTTCCGCCACGACCT 60.376 57.895 0.00 0.00 0.00 3.85
322 327 1.359459 GATTGTTCCGCCACGACCTC 61.359 60.000 0.00 0.00 0.00 3.85
323 328 2.798148 ATTGTTCCGCCACGACCTCC 62.798 60.000 0.00 0.00 0.00 4.30
329 334 4.047059 GCCACGACCTCCGAACGA 62.047 66.667 0.00 0.00 41.76 3.85
330 335 2.882876 CCACGACCTCCGAACGAT 59.117 61.111 0.00 0.00 41.76 3.73
331 336 1.996786 GCCACGACCTCCGAACGATA 61.997 60.000 0.00 0.00 41.76 2.92
332 337 0.248377 CCACGACCTCCGAACGATAC 60.248 60.000 0.00 0.00 41.76 2.24
333 338 0.731417 CACGACCTCCGAACGATACT 59.269 55.000 0.00 0.00 41.76 2.12
334 339 0.731417 ACGACCTCCGAACGATACTG 59.269 55.000 0.00 0.00 41.76 2.74
335 340 0.591741 CGACCTCCGAACGATACTGC 60.592 60.000 0.00 0.00 41.76 4.40
336 341 0.248949 GACCTCCGAACGATACTGCC 60.249 60.000 0.00 0.00 0.00 4.85
337 342 0.683504 ACCTCCGAACGATACTGCCT 60.684 55.000 0.00 0.00 0.00 4.75
338 343 0.460311 CCTCCGAACGATACTGCCTT 59.540 55.000 0.00 0.00 0.00 4.35
339 344 1.536284 CCTCCGAACGATACTGCCTTC 60.536 57.143 0.00 0.00 0.00 3.46
340 345 0.458669 TCCGAACGATACTGCCTTCC 59.541 55.000 0.00 0.00 0.00 3.46
341 346 0.529992 CCGAACGATACTGCCTTCCC 60.530 60.000 0.00 0.00 0.00 3.97
342 347 0.174845 CGAACGATACTGCCTTCCCA 59.825 55.000 0.00 0.00 0.00 4.37
343 348 1.404986 CGAACGATACTGCCTTCCCAA 60.405 52.381 0.00 0.00 0.00 4.12
344 349 2.280628 GAACGATACTGCCTTCCCAAG 58.719 52.381 0.00 0.00 0.00 3.61
345 350 1.276622 ACGATACTGCCTTCCCAAGT 58.723 50.000 0.00 0.00 0.00 3.16
346 351 1.066143 ACGATACTGCCTTCCCAAGTG 60.066 52.381 0.00 0.00 0.00 3.16
347 352 1.383523 GATACTGCCTTCCCAAGTGC 58.616 55.000 0.00 0.00 0.00 4.40
348 353 0.392998 ATACTGCCTTCCCAAGTGCG 60.393 55.000 0.00 0.00 0.00 5.34
349 354 3.741476 CTGCCTTCCCAAGTGCGC 61.741 66.667 0.00 0.00 0.00 6.09
350 355 4.269523 TGCCTTCCCAAGTGCGCT 62.270 61.111 9.73 0.00 0.00 5.92
351 356 3.435186 GCCTTCCCAAGTGCGCTC 61.435 66.667 9.73 4.74 0.00 5.03
352 357 2.747855 CCTTCCCAAGTGCGCTCC 60.748 66.667 9.73 0.00 0.00 4.70
353 358 2.348998 CTTCCCAAGTGCGCTCCT 59.651 61.111 9.73 0.76 0.00 3.69
354 359 2.032528 TTCCCAAGTGCGCTCCTG 59.967 61.111 9.73 4.79 0.00 3.86
355 360 4.704833 TCCCAAGTGCGCTCCTGC 62.705 66.667 9.73 0.00 0.00 4.85
362 367 4.710167 TGCGCTCCTGCATGCACT 62.710 61.111 18.46 0.00 40.62 4.40
363 368 3.873883 GCGCTCCTGCATGCACTC 61.874 66.667 18.46 5.02 39.64 3.51
364 369 2.125229 CGCTCCTGCATGCACTCT 60.125 61.111 18.46 0.00 39.64 3.24
365 370 1.744368 CGCTCCTGCATGCACTCTT 60.744 57.895 18.46 0.00 39.64 2.85
366 371 1.801332 GCTCCTGCATGCACTCTTG 59.199 57.895 18.46 6.59 39.41 3.02
367 372 2.267681 GCTCCTGCATGCACTCTTGC 62.268 60.000 18.46 12.83 43.50 4.01
375 380 4.144681 GCACTCTTGCTGCTCGCG 62.145 66.667 0.00 0.00 46.17 5.87
376 381 4.144681 CACTCTTGCTGCTCGCGC 62.145 66.667 0.00 0.00 43.27 6.86
377 382 4.370066 ACTCTTGCTGCTCGCGCT 62.370 61.111 5.56 0.00 43.27 5.92
378 383 3.851077 CTCTTGCTGCTCGCGCTG 61.851 66.667 5.56 0.00 43.27 5.18
390 395 3.186047 GCGCTGCCACGTACGAAT 61.186 61.111 24.41 0.00 34.88 3.34
391 396 2.995482 CGCTGCCACGTACGAATC 59.005 61.111 24.41 10.14 0.00 2.52
392 397 2.845739 CGCTGCCACGTACGAATCG 61.846 63.158 24.41 11.76 0.00 3.34
393 398 1.804326 GCTGCCACGTACGAATCGT 60.804 57.895 24.41 14.28 44.35 3.73
398 403 4.470876 ACGTACGAATCGTGCTGG 57.529 55.556 24.41 7.84 41.39 4.85
399 404 1.804326 ACGTACGAATCGTGCTGGC 60.804 57.895 24.41 2.71 41.39 4.85
400 405 1.803922 CGTACGAATCGTGCTGGCA 60.804 57.895 19.42 0.00 41.39 4.92
401 406 1.145759 CGTACGAATCGTGCTGGCAT 61.146 55.000 19.42 0.00 41.39 4.40
402 407 0.577269 GTACGAATCGTGCTGGCATC 59.423 55.000 19.42 0.00 41.39 3.91
403 408 0.869880 TACGAATCGTGCTGGCATCG 60.870 55.000 19.42 12.65 41.39 3.84
404 409 2.874694 CGAATCGTGCTGGCATCGG 61.875 63.158 13.89 2.68 0.00 4.18
405 410 3.173390 GAATCGTGCTGGCATCGGC 62.173 63.158 13.89 0.00 45.23 5.54
415 420 3.017323 GCATCGGCCACAGATTCG 58.983 61.111 2.24 0.00 0.00 3.34
416 421 1.815421 GCATCGGCCACAGATTCGT 60.815 57.895 2.24 0.00 0.00 3.85
417 422 1.766143 GCATCGGCCACAGATTCGTC 61.766 60.000 2.24 0.00 0.00 4.20
418 423 1.226974 ATCGGCCACAGATTCGTCG 60.227 57.895 2.24 0.00 0.00 5.12
419 424 1.945354 ATCGGCCACAGATTCGTCGT 61.945 55.000 2.24 0.00 0.00 4.34
420 425 2.444624 CGGCCACAGATTCGTCGTG 61.445 63.158 2.24 0.00 0.00 4.35
421 426 1.374252 GGCCACAGATTCGTCGTGT 60.374 57.895 0.00 0.00 0.00 4.49
422 427 1.626654 GGCCACAGATTCGTCGTGTG 61.627 60.000 0.00 6.71 41.09 3.82
423 428 0.944311 GCCACAGATTCGTCGTGTGT 60.944 55.000 11.38 0.00 40.02 3.72
424 429 1.667756 GCCACAGATTCGTCGTGTGTA 60.668 52.381 11.38 0.00 40.02 2.90
425 430 2.876091 CCACAGATTCGTCGTGTGTAT 58.124 47.619 11.38 0.00 40.02 2.29
426 431 3.732774 GCCACAGATTCGTCGTGTGTATA 60.733 47.826 11.38 0.00 40.02 1.47
427 432 4.035684 CCACAGATTCGTCGTGTGTATAG 58.964 47.826 11.38 0.00 40.02 1.31
428 433 3.482472 CACAGATTCGTCGTGTGTATAGC 59.518 47.826 5.74 0.00 37.41 2.97
429 434 3.128068 ACAGATTCGTCGTGTGTATAGCA 59.872 43.478 0.00 0.00 0.00 3.49
430 435 3.726235 CAGATTCGTCGTGTGTATAGCAG 59.274 47.826 0.00 0.00 0.00 4.24
431 436 1.904144 TTCGTCGTGTGTATAGCAGC 58.096 50.000 0.00 0.00 0.00 5.25
432 437 0.247934 TCGTCGTGTGTATAGCAGCG 60.248 55.000 0.00 0.00 0.00 5.18
433 438 1.798368 CGTCGTGTGTATAGCAGCGC 61.798 60.000 0.00 0.00 0.00 5.92
434 439 0.525668 GTCGTGTGTATAGCAGCGCT 60.526 55.000 2.64 2.64 43.41 5.92
435 440 0.248498 TCGTGTGTATAGCAGCGCTC 60.248 55.000 7.13 2.24 40.44 5.03
541 547 8.031277 GCAAGATCATACAGGATTTTCTTTTGT 58.969 33.333 0.00 0.00 0.00 2.83
581 587 5.477607 TGCCTTACATGCGGTATACTTAT 57.522 39.130 2.25 0.00 0.00 1.73
670 677 8.284945 AGTGACATTAAGTGCACAATATCAAT 57.715 30.769 21.04 12.01 37.34 2.57
716 724 3.428180 CGATCAATCACGTGAGGAAGTCT 60.428 47.826 24.41 8.72 0.00 3.24
729 737 1.201880 GGAAGTCTTAAGTCGTCGCCT 59.798 52.381 1.63 0.00 0.00 5.52
831 852 2.307768 TCCGATCACATCTACTGTCCC 58.692 52.381 0.00 0.00 35.29 4.46
981 1017 4.156556 GCAATCTCTTGTTTAGCACCATCA 59.843 41.667 0.00 0.00 34.69 3.07
1014 1064 6.262944 ACTGATTCACAATGTCTTGCACTAAA 59.737 34.615 0.00 0.00 35.69 1.85
1041 1091 0.391263 CGCTTACCCTGGTTGTCCTC 60.391 60.000 0.00 0.00 34.23 3.71
1059 1109 5.126067 GTCCTCTTTAGCATTGGATTAGCA 58.874 41.667 0.00 0.00 0.00 3.49
1107 1158 2.840753 TTCCCAGGGAACAGGCACC 61.841 63.158 18.05 0.00 36.71 5.01
1215 1269 1.001764 CCATGCAAGTGCTGGAGGA 60.002 57.895 13.39 0.00 39.83 3.71
1252 1306 2.560981 GGTTGGTCAGGGTTTAATGGTG 59.439 50.000 0.00 0.00 0.00 4.17
1263 1317 3.361786 GTTTAATGGTGCTGGGTATGGT 58.638 45.455 0.00 0.00 0.00 3.55
1344 1398 1.628846 GGTGATGGTGGGAGTACAAGT 59.371 52.381 0.00 0.00 0.00 3.16
1411 1468 3.941657 GACGACTGCCCTGCTGACC 62.942 68.421 0.00 0.00 0.00 4.02
1470 1527 1.344438 TCCAGCGAGGCGAATAATGAT 59.656 47.619 0.00 0.00 37.29 2.45
1503 1560 4.523943 TCCTACACAAATGCAAATGCTTCT 59.476 37.500 6.97 0.00 42.66 2.85
1572 1629 1.227823 CACAGGCAGTGGAAACGGA 60.228 57.895 1.52 0.00 44.69 4.69
1723 3629 8.724310 ACTAATAAAGGGCTTCATTACATAGGT 58.276 33.333 0.00 0.00 0.00 3.08
1730 3636 3.941483 GCTTCATTACATAGGTGTGTGCT 59.059 43.478 0.00 0.00 39.39 4.40
1732 3638 5.760253 GCTTCATTACATAGGTGTGTGCTAT 59.240 40.000 0.00 0.00 39.39 2.97
1738 3644 4.430007 ACATAGGTGTGTGCTATGTAACG 58.570 43.478 0.00 0.00 40.99 3.18
1749 3655 2.547211 GCTATGTAACGCGGAGACTAGA 59.453 50.000 12.47 0.00 0.00 2.43
1808 3737 4.462483 TCCAACCTTTCATTCCATGCTTAC 59.538 41.667 0.00 0.00 0.00 2.34
1816 3745 3.056179 TCATTCCATGCTTACTGTGTCGA 60.056 43.478 0.00 0.00 0.00 4.20
1837 3766 8.899771 TGTCGATGAGATAACACTAAACTATCA 58.100 33.333 0.00 0.00 0.00 2.15
1878 3807 7.380602 GCCATCTATATTGAACTCATTTGTTGC 59.619 37.037 0.00 0.00 0.00 4.17
1882 3811 3.731652 TTGAACTCATTTGTTGCAGGG 57.268 42.857 0.00 0.00 0.00 4.45
1938 3867 2.766345 ATTGCGGCAAAATGGTGATT 57.234 40.000 20.48 0.00 0.00 2.57
1939 3868 3.883830 ATTGCGGCAAAATGGTGATTA 57.116 38.095 20.48 0.00 0.00 1.75
1948 3877 5.510520 GGCAAAATGGTGATTAAACTGGTCA 60.511 40.000 0.00 0.00 0.00 4.02
1975 3904 2.092267 TGGCTGCACATATGTCCTTGAT 60.092 45.455 5.07 0.00 0.00 2.57
1993 3922 2.100584 TGATGTGGTTGGCAAAGTTGAC 59.899 45.455 0.00 0.00 36.50 3.18
2008 3937 2.450886 AGTTGACTTCCCAAATTCCCCT 59.549 45.455 0.00 0.00 0.00 4.79
2020 4220 5.189180 CCAAATTCCCCTCAAACAAAAACA 58.811 37.500 0.00 0.00 0.00 2.83
2085 4286 9.956720 AAGATGAGTTACACAAAGAAAAATCAG 57.043 29.630 0.00 0.00 30.58 2.90
2095 4296 8.196771 ACACAAAGAAAAATCAGAAATAGCACA 58.803 29.630 0.00 0.00 0.00 4.57
2197 4402 3.767673 ACTCCCTATTTGTGAGCGTAGAA 59.232 43.478 0.00 0.00 0.00 2.10
2242 4447 1.228245 TGAGTCCAGTGGCTTTGGC 60.228 57.895 3.51 0.00 35.62 4.52
2277 4482 3.808466 CAGATCTGGATTGAACGAGGA 57.192 47.619 15.38 0.00 0.00 3.71
2313 4518 5.242393 GTGATGCCTCCTATACAAATGCAAT 59.758 40.000 0.00 0.00 0.00 3.56
2321 4526 4.442073 CCTATACAAATGCAATTGCTTCGC 59.558 41.667 29.37 4.82 42.66 4.70
2358 4563 1.536943 GGCGGTGGTAAAAATGGCCA 61.537 55.000 8.56 8.56 38.88 5.36
2362 4567 2.224066 CGGTGGTAAAAATGGCCAAACA 60.224 45.455 10.96 0.00 33.66 2.83
2365 4570 3.041946 TGGTAAAAATGGCCAAACAGGT 58.958 40.909 10.96 0.00 40.61 4.00
2399 4604 0.668096 TGCGAACGGTTACTGCGATT 60.668 50.000 4.17 0.00 0.00 3.34
2434 4639 3.430895 GCCTCATTGTGCAATCAAAACAG 59.569 43.478 0.00 0.00 0.00 3.16
2504 4711 7.679638 GCATTTATCTGTTCTTACGCTTCCATT 60.680 37.037 0.00 0.00 0.00 3.16
2508 4715 6.662414 TCTGTTCTTACGCTTCCATTTATG 57.338 37.500 0.00 0.00 0.00 1.90
2525 4732 8.491045 CCATTTATGGGGGACAACTAATAAAT 57.509 34.615 0.56 0.00 44.31 1.40
2529 4736 3.270960 TGGGGGACAACTAATAAATGGCT 59.729 43.478 0.00 0.00 0.00 4.75
2581 4788 5.652518 GGAGACTACCTATTTCACTGTGAC 58.347 45.833 10.56 0.00 0.00 3.67
2584 4791 6.634805 AGACTACCTATTTCACTGTGACATG 58.365 40.000 17.35 6.29 0.00 3.21
2586 4793 3.002791 ACCTATTTCACTGTGACATGCG 58.997 45.455 17.35 10.35 0.00 4.73
2590 4797 3.773860 TTTCACTGTGACATGCGTTTT 57.226 38.095 10.56 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.144969 GTTCTTGATCGTCGGTGCAA 58.855 50.000 0.00 0.00 0.00 4.08
43 44 1.542030 GGAGCTCTGACTCGTTCTTGA 59.458 52.381 14.64 0.00 37.57 3.02
64 65 4.133796 GCCTGGCATGCGGAAACC 62.134 66.667 15.17 0.00 0.00 3.27
105 109 8.623903 CATTAATACTGGTGTTCCTACGTACTA 58.376 37.037 0.00 0.00 34.23 1.82
129 134 3.854666 CTGTGTAGCACTGCTCTTACAT 58.145 45.455 6.86 0.00 40.44 2.29
179 184 3.838317 TCCACCAGTGATTAGCTAGTGTT 59.162 43.478 0.00 0.00 0.00 3.32
219 224 6.156429 ACGATGGTAGGATCTTTAGTTCCTTT 59.844 38.462 13.17 0.03 40.39 3.11
228 233 2.236146 TGTGCACGATGGTAGGATCTTT 59.764 45.455 13.13 0.00 0.00 2.52
253 258 3.490933 CGGAATAGCTCGATTTCTGGACA 60.491 47.826 0.00 0.00 0.00 4.02
276 281 8.227791 GTCTGTGAAGCAATTTCGTTAGATTAA 58.772 33.333 0.00 0.00 38.71 1.40
277 282 7.411480 CGTCTGTGAAGCAATTTCGTTAGATTA 60.411 37.037 0.00 0.00 38.71 1.75
278 283 6.603095 GTCTGTGAAGCAATTTCGTTAGATT 58.397 36.000 0.00 0.00 38.71 2.40
279 284 5.163953 CGTCTGTGAAGCAATTTCGTTAGAT 60.164 40.000 0.00 0.00 38.71 1.98
280 285 4.149922 CGTCTGTGAAGCAATTTCGTTAGA 59.850 41.667 0.00 0.00 38.71 2.10
281 286 4.149922 TCGTCTGTGAAGCAATTTCGTTAG 59.850 41.667 0.00 0.00 38.71 2.34
282 287 4.052608 TCGTCTGTGAAGCAATTTCGTTA 58.947 39.130 0.00 0.00 38.71 3.18
283 288 2.869801 TCGTCTGTGAAGCAATTTCGTT 59.130 40.909 0.00 0.00 38.71 3.85
284 289 2.479837 TCGTCTGTGAAGCAATTTCGT 58.520 42.857 0.00 0.00 38.71 3.85
285 290 3.729526 ATCGTCTGTGAAGCAATTTCG 57.270 42.857 0.00 0.00 38.71 3.46
286 291 4.787598 ACAATCGTCTGTGAAGCAATTTC 58.212 39.130 0.00 0.00 36.29 2.17
287 292 4.836125 ACAATCGTCTGTGAAGCAATTT 57.164 36.364 0.00 0.00 0.00 1.82
288 293 4.320494 GGAACAATCGTCTGTGAAGCAATT 60.320 41.667 0.00 0.00 0.00 2.32
289 294 3.189287 GGAACAATCGTCTGTGAAGCAAT 59.811 43.478 0.00 0.00 0.00 3.56
290 295 2.548057 GGAACAATCGTCTGTGAAGCAA 59.452 45.455 0.00 0.00 0.00 3.91
291 296 2.143122 GGAACAATCGTCTGTGAAGCA 58.857 47.619 0.00 0.00 0.00 3.91
292 297 1.126846 CGGAACAATCGTCTGTGAAGC 59.873 52.381 0.00 0.00 0.00 3.86
293 298 1.126846 GCGGAACAATCGTCTGTGAAG 59.873 52.381 0.00 0.00 0.00 3.02
294 299 1.144969 GCGGAACAATCGTCTGTGAA 58.855 50.000 0.00 0.00 0.00 3.18
295 300 0.669318 GGCGGAACAATCGTCTGTGA 60.669 55.000 0.00 0.00 0.00 3.58
296 301 0.948623 TGGCGGAACAATCGTCTGTG 60.949 55.000 0.00 0.00 32.95 3.66
297 302 0.949105 GTGGCGGAACAATCGTCTGT 60.949 55.000 0.00 0.00 32.95 3.41
298 303 1.787847 GTGGCGGAACAATCGTCTG 59.212 57.895 0.00 0.00 32.95 3.51
299 304 1.736645 CGTGGCGGAACAATCGTCT 60.737 57.895 0.00 0.00 32.95 4.18
300 305 1.735198 TCGTGGCGGAACAATCGTC 60.735 57.895 0.00 0.00 0.00 4.20
301 306 2.025418 GTCGTGGCGGAACAATCGT 61.025 57.895 0.00 0.00 0.00 3.73
302 307 2.736682 GGTCGTGGCGGAACAATCG 61.737 63.158 0.00 0.00 0.00 3.34
303 308 1.359459 GAGGTCGTGGCGGAACAATC 61.359 60.000 0.00 0.00 0.00 2.67
304 309 1.375523 GAGGTCGTGGCGGAACAAT 60.376 57.895 0.00 0.00 0.00 2.71
305 310 2.029964 GAGGTCGTGGCGGAACAA 59.970 61.111 0.00 0.00 0.00 2.83
306 311 3.998672 GGAGGTCGTGGCGGAACA 61.999 66.667 0.00 0.00 0.00 3.18
312 317 1.996786 TATCGTTCGGAGGTCGTGGC 61.997 60.000 0.00 0.00 40.32 5.01
313 318 0.248377 GTATCGTTCGGAGGTCGTGG 60.248 60.000 0.00 0.00 40.32 4.94
314 319 0.731417 AGTATCGTTCGGAGGTCGTG 59.269 55.000 0.00 0.00 40.32 4.35
315 320 0.731417 CAGTATCGTTCGGAGGTCGT 59.269 55.000 0.00 0.00 40.32 4.34
316 321 0.591741 GCAGTATCGTTCGGAGGTCG 60.592 60.000 0.00 0.00 40.90 4.79
317 322 0.248949 GGCAGTATCGTTCGGAGGTC 60.249 60.000 0.00 0.00 0.00 3.85
318 323 0.683504 AGGCAGTATCGTTCGGAGGT 60.684 55.000 0.00 0.00 0.00 3.85
319 324 0.460311 AAGGCAGTATCGTTCGGAGG 59.540 55.000 0.00 0.00 0.00 4.30
320 325 1.536284 GGAAGGCAGTATCGTTCGGAG 60.536 57.143 0.00 0.00 33.14 4.63
321 326 0.458669 GGAAGGCAGTATCGTTCGGA 59.541 55.000 0.00 0.00 33.14 4.55
322 327 0.529992 GGGAAGGCAGTATCGTTCGG 60.530 60.000 0.00 0.00 33.14 4.30
323 328 0.174845 TGGGAAGGCAGTATCGTTCG 59.825 55.000 0.00 0.00 33.14 3.95
324 329 2.280628 CTTGGGAAGGCAGTATCGTTC 58.719 52.381 0.00 0.00 0.00 3.95
325 330 1.628846 ACTTGGGAAGGCAGTATCGTT 59.371 47.619 0.00 0.00 0.00 3.85
326 331 1.066143 CACTTGGGAAGGCAGTATCGT 60.066 52.381 0.00 0.00 0.00 3.73
327 332 1.656652 CACTTGGGAAGGCAGTATCG 58.343 55.000 0.00 0.00 0.00 2.92
328 333 1.383523 GCACTTGGGAAGGCAGTATC 58.616 55.000 0.00 0.00 0.00 2.24
329 334 0.392998 CGCACTTGGGAAGGCAGTAT 60.393 55.000 0.00 0.00 0.00 2.12
330 335 1.003839 CGCACTTGGGAAGGCAGTA 60.004 57.895 0.00 0.00 0.00 2.74
331 336 2.281761 CGCACTTGGGAAGGCAGT 60.282 61.111 0.00 0.00 0.00 4.40
332 337 3.741476 GCGCACTTGGGAAGGCAG 61.741 66.667 0.30 0.00 0.00 4.85
333 338 4.269523 AGCGCACTTGGGAAGGCA 62.270 61.111 11.47 0.00 0.00 4.75
334 339 3.435186 GAGCGCACTTGGGAAGGC 61.435 66.667 11.47 0.00 0.00 4.35
335 340 2.747855 GGAGCGCACTTGGGAAGG 60.748 66.667 11.47 0.00 0.00 3.46
336 341 2.037136 CAGGAGCGCACTTGGGAAG 61.037 63.158 11.47 0.00 0.00 3.46
337 342 2.032528 CAGGAGCGCACTTGGGAA 59.967 61.111 11.47 0.00 0.00 3.97
338 343 4.704833 GCAGGAGCGCACTTGGGA 62.705 66.667 17.85 0.00 0.00 4.37
340 345 2.749044 ATGCAGGAGCGCACTTGG 60.749 61.111 17.85 3.20 46.56 3.61
341 346 2.483745 CATGCAGGAGCGCACTTG 59.516 61.111 11.47 12.07 46.56 3.16
342 347 3.437795 GCATGCAGGAGCGCACTT 61.438 61.111 14.21 0.00 46.56 3.16
343 348 4.710167 TGCATGCAGGAGCGCACT 62.710 61.111 18.46 4.05 46.56 4.40
344 349 4.471726 GTGCATGCAGGAGCGCAC 62.472 66.667 23.41 1.97 46.56 5.34
346 351 3.873883 GAGTGCATGCAGGAGCGC 61.874 66.667 23.41 8.26 46.23 5.92
347 352 1.744368 AAGAGTGCATGCAGGAGCG 60.744 57.895 23.41 0.00 46.23 5.03
348 353 1.801332 CAAGAGTGCATGCAGGAGC 59.199 57.895 23.41 9.52 42.57 4.70
373 378 3.139118 GATTCGTACGTGGCAGCGC 62.139 63.158 16.05 0.00 34.88 5.92
374 379 2.845739 CGATTCGTACGTGGCAGCG 61.846 63.158 16.05 8.75 37.94 5.18
375 380 1.804326 ACGATTCGTACGTGGCAGC 60.804 57.895 16.05 0.16 42.37 5.25
376 381 4.470876 ACGATTCGTACGTGGCAG 57.529 55.556 16.05 7.02 42.37 4.85
381 386 1.804326 GCCAGCACGATTCGTACGT 60.804 57.895 16.05 0.00 44.83 3.57
382 387 1.145759 ATGCCAGCACGATTCGTACG 61.146 55.000 11.99 9.53 38.32 3.67
383 388 0.577269 GATGCCAGCACGATTCGTAC 59.423 55.000 11.99 6.33 38.32 3.67
384 389 0.869880 CGATGCCAGCACGATTCGTA 60.870 55.000 11.99 0.00 38.32 3.43
385 390 2.167219 CGATGCCAGCACGATTCGT 61.167 57.895 5.75 5.75 42.36 3.85
386 391 2.622629 CGATGCCAGCACGATTCG 59.377 61.111 4.14 4.14 0.00 3.34
387 392 3.017323 CCGATGCCAGCACGATTC 58.983 61.111 13.59 0.00 0.00 2.52
388 393 3.204827 GCCGATGCCAGCACGATT 61.205 61.111 13.59 0.00 0.00 3.34
398 403 1.766143 GACGAATCTGTGGCCGATGC 61.766 60.000 0.00 0.00 0.00 3.91
399 404 1.482621 CGACGAATCTGTGGCCGATG 61.483 60.000 0.00 0.00 0.00 3.84
400 405 1.226974 CGACGAATCTGTGGCCGAT 60.227 57.895 0.00 0.00 0.00 4.18
401 406 2.180769 CGACGAATCTGTGGCCGA 59.819 61.111 0.00 0.00 0.00 5.54
402 407 2.126071 ACGACGAATCTGTGGCCG 60.126 61.111 0.00 0.00 0.00 6.13
403 408 1.374252 ACACGACGAATCTGTGGCC 60.374 57.895 0.00 0.00 35.20 5.36
404 409 0.944311 ACACACGACGAATCTGTGGC 60.944 55.000 17.35 0.00 37.85 5.01
405 410 2.341318 TACACACGACGAATCTGTGG 57.659 50.000 17.35 3.79 37.85 4.17
406 411 3.482472 GCTATACACACGACGAATCTGTG 59.518 47.826 13.04 13.04 38.70 3.66
407 412 3.128068 TGCTATACACACGACGAATCTGT 59.872 43.478 0.00 0.00 0.00 3.41
408 413 3.691498 TGCTATACACACGACGAATCTG 58.309 45.455 0.00 0.00 0.00 2.90
409 414 3.792459 GCTGCTATACACACGACGAATCT 60.792 47.826 0.00 0.00 0.00 2.40
410 415 2.468040 GCTGCTATACACACGACGAATC 59.532 50.000 0.00 0.00 0.00 2.52
411 416 2.460918 GCTGCTATACACACGACGAAT 58.539 47.619 0.00 0.00 0.00 3.34
412 417 1.792632 CGCTGCTATACACACGACGAA 60.793 52.381 0.00 0.00 0.00 3.85
413 418 0.247934 CGCTGCTATACACACGACGA 60.248 55.000 0.00 0.00 0.00 4.20
414 419 1.798368 GCGCTGCTATACACACGACG 61.798 60.000 0.00 0.00 0.00 5.12
415 420 0.525668 AGCGCTGCTATACACACGAC 60.526 55.000 10.39 0.00 36.99 4.34
416 421 0.248498 GAGCGCTGCTATACACACGA 60.248 55.000 18.48 0.00 39.88 4.35
417 422 0.248661 AGAGCGCTGCTATACACACG 60.249 55.000 18.48 0.00 39.88 4.49
418 423 1.927895 AAGAGCGCTGCTATACACAC 58.072 50.000 18.48 0.00 39.88 3.82
419 424 3.793797 TTAAGAGCGCTGCTATACACA 57.206 42.857 18.48 0.00 39.88 3.72
420 425 4.051922 ACATTAAGAGCGCTGCTATACAC 58.948 43.478 18.48 0.00 39.88 2.90
421 426 4.322080 ACATTAAGAGCGCTGCTATACA 57.678 40.909 18.48 0.00 39.88 2.29
422 427 6.670927 GCATTACATTAAGAGCGCTGCTATAC 60.671 42.308 18.48 0.00 39.88 1.47
423 428 5.348724 GCATTACATTAAGAGCGCTGCTATA 59.651 40.000 18.48 0.00 39.88 1.31
424 429 4.153117 GCATTACATTAAGAGCGCTGCTAT 59.847 41.667 18.48 0.00 39.88 2.97
425 430 3.494626 GCATTACATTAAGAGCGCTGCTA 59.505 43.478 18.48 2.01 39.88 3.49
426 431 2.289002 GCATTACATTAAGAGCGCTGCT 59.711 45.455 18.48 9.38 43.88 4.24
427 432 2.032054 TGCATTACATTAAGAGCGCTGC 59.968 45.455 18.48 9.04 0.00 5.25
428 433 3.950087 TGCATTACATTAAGAGCGCTG 57.050 42.857 18.48 1.49 0.00 5.18
429 434 4.129380 TGATGCATTACATTAAGAGCGCT 58.871 39.130 11.27 11.27 39.84 5.92
430 435 4.472691 TGATGCATTACATTAAGAGCGC 57.527 40.909 0.00 0.00 39.84 5.92
431 436 4.849926 GCATGATGCATTACATTAAGAGCG 59.150 41.667 13.36 0.00 44.26 5.03
469 475 1.000274 TCGACACATGGACAGTGAGTG 60.000 52.381 0.00 0.24 40.16 3.51
471 477 2.438868 TTCGACACATGGACAGTGAG 57.561 50.000 0.00 0.00 40.16 3.51
541 547 7.608376 TGTAAGGCATGTGTTACTGCTAATTAA 59.392 33.333 15.87 0.00 38.45 1.40
670 677 0.982852 AGGCGATCACAGGGAATCCA 60.983 55.000 0.09 0.00 34.83 3.41
716 724 1.080093 CTGCCAGGCGACGACTTAA 60.080 57.895 0.00 0.00 0.00 1.85
729 737 1.079127 GCTTAGTTCGAGCCTGCCA 60.079 57.895 0.00 0.00 34.06 4.92
772 780 4.024218 GCAGCAACTGGAGCTTCTATAATG 60.024 45.833 0.00 0.00 41.14 1.90
831 852 1.610038 TGGACTTTGATGCAGCAACTG 59.390 47.619 18.52 15.35 34.12 3.16
934 968 1.202927 GGCATTTATAGGGCTGGCTCA 60.203 52.381 0.00 0.00 0.00 4.26
960 996 5.182001 GTGTGATGGTGCTAAACAAGAGATT 59.818 40.000 0.00 0.00 0.00 2.40
981 1017 3.947196 ACATTGTGAATCAGTGTGTGTGT 59.053 39.130 0.00 0.00 43.57 3.72
1014 1064 2.679082 ACCAGGGTAAGCGATATGAGT 58.321 47.619 0.00 0.00 0.00 3.41
1041 1091 4.285292 CGCTTGCTAATCCAATGCTAAAG 58.715 43.478 0.00 0.00 0.00 1.85
1059 1109 2.158505 TCTAGATACCCTACCAGCGCTT 60.159 50.000 7.50 0.00 0.00 4.68
1113 1164 2.766229 GCTCCTCCACCCTCTCCC 60.766 72.222 0.00 0.00 0.00 4.30
1252 1306 2.124151 CCCAGCACCATACCCAGC 60.124 66.667 0.00 0.00 0.00 4.85
1344 1398 4.263572 CCACCGGAACCACCTGCA 62.264 66.667 9.46 0.00 36.31 4.41
1392 1449 2.917227 TCAGCAGGGCAGTCGTCA 60.917 61.111 0.00 0.00 0.00 4.35
1470 1527 1.357137 TTGTGTAGGAGGCATCACCA 58.643 50.000 0.00 0.00 43.14 4.17
1503 1560 3.673956 CTCGCCGCCACCATTACCA 62.674 63.158 0.00 0.00 0.00 3.25
1548 1605 4.584518 CCACTGCCTGTGCCACCA 62.585 66.667 0.00 0.00 44.92 4.17
1572 1629 0.035739 AAGGGTTTGCGTCACCGTAT 59.964 50.000 0.00 0.00 34.79 3.06
1723 3629 0.244178 TCCGCGTTACATAGCACACA 59.756 50.000 4.92 0.00 0.00 3.72
1730 3636 7.173735 TGAAATATCTAGTCTCCGCGTTACATA 59.826 37.037 4.92 0.00 0.00 2.29
1732 3638 5.297527 TGAAATATCTAGTCTCCGCGTTACA 59.702 40.000 4.92 0.00 0.00 2.41
1738 3644 4.979197 CACAGTGAAATATCTAGTCTCCGC 59.021 45.833 0.00 0.00 0.00 5.54
1808 3737 7.030165 AGTTTAGTGTTATCTCATCGACACAG 58.970 38.462 8.02 0.00 43.56 3.66
1846 3775 5.758296 TGAGTTCAATATAGATGGCGGAAAC 59.242 40.000 0.00 0.00 0.00 2.78
1848 3777 5.545063 TGAGTTCAATATAGATGGCGGAA 57.455 39.130 0.00 0.00 0.00 4.30
1849 3778 5.745312 ATGAGTTCAATATAGATGGCGGA 57.255 39.130 0.00 0.00 0.00 5.54
1908 3837 5.392767 TTTTGCCGCAATACTAATTTCCA 57.607 34.783 6.64 0.00 0.00 3.53
1924 3853 4.893608 ACCAGTTTAATCACCATTTTGCC 58.106 39.130 0.00 0.00 0.00 4.52
1938 3867 3.756434 GCAGCCAGTAATTGACCAGTTTA 59.244 43.478 0.00 0.00 0.00 2.01
1939 3868 2.558359 GCAGCCAGTAATTGACCAGTTT 59.442 45.455 0.00 0.00 0.00 2.66
1948 3877 3.885297 GGACATATGTGCAGCCAGTAATT 59.115 43.478 21.16 0.00 36.33 1.40
1975 3904 1.846007 AGTCAACTTTGCCAACCACA 58.154 45.000 0.00 0.00 0.00 4.17
1993 3922 3.238597 TGTTTGAGGGGAATTTGGGAAG 58.761 45.455 0.00 0.00 0.00 3.46
2008 3937 6.370166 GGGAAACTTGTGATGTTTTTGTTTGA 59.630 34.615 0.00 0.00 37.70 2.69
2020 4220 4.277476 TGTTGTTGAGGGAAACTTGTGAT 58.723 39.130 0.00 0.00 0.00 3.06
2153 4354 7.280205 GGAGTTAAGGTCATGTCGATTAAACAT 59.720 37.037 0.00 0.00 37.85 2.71
2197 4402 0.883814 AGTCTTCGTCGTCGTCCACT 60.884 55.000 1.33 0.00 38.33 4.00
2258 4463 3.636679 TCTCCTCGTTCAATCCAGATCT 58.363 45.455 0.00 0.00 0.00 2.75
2271 4476 5.545588 CATCACCATCATTATTCTCCTCGT 58.454 41.667 0.00 0.00 0.00 4.18
2277 4482 4.353191 AGGAGGCATCACCATCATTATTCT 59.647 41.667 0.00 0.00 43.14 2.40
2333 4538 0.885596 TTTTTACCACCGCCCTCACG 60.886 55.000 0.00 0.00 0.00 4.35
2358 4563 2.113139 CTCCGCCACCACCTGTTT 59.887 61.111 0.00 0.00 0.00 2.83
2378 4583 2.019951 CGCAGTAACCGTTCGCACT 61.020 57.895 0.00 0.00 0.00 4.40
2382 4587 1.342555 TGAATCGCAGTAACCGTTCG 58.657 50.000 0.00 0.00 0.00 3.95
2383 4588 3.476181 GTTTGAATCGCAGTAACCGTTC 58.524 45.455 0.00 0.00 0.00 3.95
2399 4604 2.892852 CAATGAGGCTTCAAGGGTTTGA 59.107 45.455 1.33 0.00 41.44 2.69
2460 4665 6.573617 AAATGCAAAGAGAAAAACAAGACG 57.426 33.333 0.00 0.00 0.00 4.18
2461 4666 9.468532 AGATAAATGCAAAGAGAAAAACAAGAC 57.531 29.630 0.00 0.00 0.00 3.01
2463 4668 9.252962 ACAGATAAATGCAAAGAGAAAAACAAG 57.747 29.630 0.00 0.00 0.00 3.16
2504 4711 5.836358 GCCATTTATTAGTTGTCCCCCATAA 59.164 40.000 0.00 0.00 0.00 1.90
2508 4715 3.910989 AGCCATTTATTAGTTGTCCCCC 58.089 45.455 0.00 0.00 0.00 5.40
2509 4716 4.953579 TGAAGCCATTTATTAGTTGTCCCC 59.046 41.667 0.00 0.00 0.00 4.81
2555 4762 2.694109 AGTGAAATAGGTAGTCTCCGCC 59.306 50.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.