Multiple sequence alignment - TraesCS3B01G059800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G059800 chr3B 100.000 2459 0 0 1 2459 31296540 31298998 0.000000e+00 4542
1 TraesCS3B01G059800 chr3B 87.519 649 68 6 1 637 31550643 31551290 0.000000e+00 737
2 TraesCS3B01G059800 chr3B 87.403 643 65 8 1 629 31532906 31533546 0.000000e+00 725
3 TraesCS3B01G059800 chr3B 86.798 659 70 7 1 642 31189020 31189678 0.000000e+00 719
4 TraesCS3B01G059800 chr3B 90.019 521 43 2 15 527 31519078 31519597 0.000000e+00 665
5 TraesCS3B01G059800 chr7B 97.963 1816 32 5 648 2459 716003590 716005404 0.000000e+00 3144
6 TraesCS3B01G059800 chr7B 96.861 1816 31 9 648 2459 684309171 684310964 0.000000e+00 3014
7 TraesCS3B01G059800 chr7B 96.368 1817 36 14 648 2459 697603941 697602150 0.000000e+00 2963
8 TraesCS3B01G059800 chr6B 96.973 1817 31 8 648 2459 22001270 21999473 0.000000e+00 3029
9 TraesCS3B01G059800 chr6B 96.798 1655 30 6 809 2459 22075157 22073522 0.000000e+00 2741
10 TraesCS3B01G059800 chr6B 93.788 1819 75 22 648 2459 64305158 64303371 0.000000e+00 2699
11 TraesCS3B01G059800 chr6A 96.423 1817 35 14 648 2459 593775859 593774068 0.000000e+00 2968
12 TraesCS3B01G059800 chr2B 96.421 1816 33 13 648 2459 53975963 53977750 0.000000e+00 2964
13 TraesCS3B01G059800 chr7A 96.417 1814 36 12 647 2456 40032043 40033831 0.000000e+00 2963
14 TraesCS3B01G059800 chr4B 96.419 1815 34 13 648 2456 437234399 437236188 0.000000e+00 2963
15 TraesCS3B01G059800 chr4B 94.717 1817 62 13 647 2459 460863606 460861820 0.000000e+00 2793
16 TraesCS3B01G059800 chr4B 89.572 537 11 11 1941 2459 669849039 669848530 7.410000e-180 640
17 TraesCS3B01G059800 chr4A 96.417 1814 35 13 648 2456 724630114 724631902 0.000000e+00 2963
18 TraesCS3B01G059800 chr5B 95.350 1828 45 13 647 2459 593500287 593498485 0.000000e+00 2868
19 TraesCS3B01G059800 chr5B 95.215 1818 55 15 647 2459 557255419 557257209 0.000000e+00 2846
20 TraesCS3B01G059800 chr3D 88.849 556 59 2 1 554 19625664 19626218 0.000000e+00 680
21 TraesCS3B01G059800 chr3A 87.103 504 59 3 111 608 27098423 27098926 1.280000e-157 566
22 TraesCS3B01G059800 chr3A 87.103 504 59 3 111 608 27233754 27234257 1.280000e-157 566
23 TraesCS3B01G059800 chr3A 86.508 504 62 3 111 608 27187404 27187907 1.290000e-152 549
24 TraesCS3B01G059800 chr3A 93.443 122 8 0 1 122 27146858 27146979 5.400000e-42 182
25 TraesCS3B01G059800 chr3A 93.443 122 8 0 1 122 27185813 27185934 5.400000e-42 182
26 TraesCS3B01G059800 chr3A 92.623 122 9 0 1 122 27096512 27096633 2.510000e-40 176
27 TraesCS3B01G059800 chr3A 91.803 122 10 0 1 122 27231724 27231845 1.170000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G059800 chr3B 31296540 31298998 2458 False 4542.0 4542 100.0000 1 2459 1 chr3B.!!$F2 2458
1 TraesCS3B01G059800 chr3B 31550643 31551290 647 False 737.0 737 87.5190 1 637 1 chr3B.!!$F5 636
2 TraesCS3B01G059800 chr3B 31532906 31533546 640 False 725.0 725 87.4030 1 629 1 chr3B.!!$F4 628
3 TraesCS3B01G059800 chr3B 31189020 31189678 658 False 719.0 719 86.7980 1 642 1 chr3B.!!$F1 641
4 TraesCS3B01G059800 chr3B 31519078 31519597 519 False 665.0 665 90.0190 15 527 1 chr3B.!!$F3 512
5 TraesCS3B01G059800 chr7B 716003590 716005404 1814 False 3144.0 3144 97.9630 648 2459 1 chr7B.!!$F2 1811
6 TraesCS3B01G059800 chr7B 684309171 684310964 1793 False 3014.0 3014 96.8610 648 2459 1 chr7B.!!$F1 1811
7 TraesCS3B01G059800 chr7B 697602150 697603941 1791 True 2963.0 2963 96.3680 648 2459 1 chr7B.!!$R1 1811
8 TraesCS3B01G059800 chr6B 21999473 22001270 1797 True 3029.0 3029 96.9730 648 2459 1 chr6B.!!$R1 1811
9 TraesCS3B01G059800 chr6B 22073522 22075157 1635 True 2741.0 2741 96.7980 809 2459 1 chr6B.!!$R2 1650
10 TraesCS3B01G059800 chr6B 64303371 64305158 1787 True 2699.0 2699 93.7880 648 2459 1 chr6B.!!$R3 1811
11 TraesCS3B01G059800 chr6A 593774068 593775859 1791 True 2968.0 2968 96.4230 648 2459 1 chr6A.!!$R1 1811
12 TraesCS3B01G059800 chr2B 53975963 53977750 1787 False 2964.0 2964 96.4210 648 2459 1 chr2B.!!$F1 1811
13 TraesCS3B01G059800 chr7A 40032043 40033831 1788 False 2963.0 2963 96.4170 647 2456 1 chr7A.!!$F1 1809
14 TraesCS3B01G059800 chr4B 437234399 437236188 1789 False 2963.0 2963 96.4190 648 2456 1 chr4B.!!$F1 1808
15 TraesCS3B01G059800 chr4B 460861820 460863606 1786 True 2793.0 2793 94.7170 647 2459 1 chr4B.!!$R1 1812
16 TraesCS3B01G059800 chr4B 669848530 669849039 509 True 640.0 640 89.5720 1941 2459 1 chr4B.!!$R2 518
17 TraesCS3B01G059800 chr4A 724630114 724631902 1788 False 2963.0 2963 96.4170 648 2456 1 chr4A.!!$F1 1808
18 TraesCS3B01G059800 chr5B 593498485 593500287 1802 True 2868.0 2868 95.3500 647 2459 1 chr5B.!!$R1 1812
19 TraesCS3B01G059800 chr5B 557255419 557257209 1790 False 2846.0 2846 95.2150 647 2459 1 chr5B.!!$F1 1812
20 TraesCS3B01G059800 chr3D 19625664 19626218 554 False 680.0 680 88.8490 1 554 1 chr3D.!!$F1 553
21 TraesCS3B01G059800 chr3A 27096512 27098926 2414 False 371.0 566 89.8630 1 608 2 chr3A.!!$F2 607
22 TraesCS3B01G059800 chr3A 27231724 27234257 2533 False 368.5 566 89.4530 1 608 2 chr3A.!!$F4 607
23 TraesCS3B01G059800 chr3A 27185813 27187907 2094 False 365.5 549 89.9755 1 608 2 chr3A.!!$F3 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
621 2553 0.106619 TTGGCCCCACTAACGTGTTT 60.107 50.0 0.0 0.0 39.55 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1871 3913 1.304134 GGGCCCATTTTCTCACGGT 60.304 57.895 19.95 0.0 0.0 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.185511 AGGACTCATGATTTCACATGTTCAT 58.814 36.000 5.14 5.14 45.21 2.57
123 2046 4.227538 GAGCTGATGCATGATGTAATTGC 58.772 43.478 2.46 0.00 42.74 3.56
182 2105 3.546617 CGTAGTAGTCTGCTCTTATGCG 58.453 50.000 0.00 0.00 35.36 4.73
202 2125 2.363038 CGTAGTGGGATACGGGATTGAA 59.637 50.000 0.00 0.00 43.70 2.69
272 2204 4.499188 GCTATATGGCCTACATCGCGAATA 60.499 45.833 15.24 8.19 41.03 1.75
302 2234 2.005451 CATGGAAGCCTCTGAAGAACG 58.995 52.381 0.00 0.00 0.00 3.95
340 2272 3.374220 TTTGGATGTTGCAAAGAGCTG 57.626 42.857 0.00 0.00 45.94 4.24
341 2273 2.275134 TGGATGTTGCAAAGAGCTGA 57.725 45.000 0.00 0.00 45.94 4.26
379 2311 5.978814 AGCACGAGTAGGTGATAGATTTTT 58.021 37.500 0.00 0.00 40.38 1.94
383 2315 6.477033 CACGAGTAGGTGATAGATTTTTCCAG 59.523 42.308 0.00 0.00 40.38 3.86
391 2323 8.772250 AGGTGATAGATTTTTCCAGTGATCTAA 58.228 33.333 0.00 0.00 35.45 2.10
401 2333 6.899393 TTCCAGTGATCTAATGCTTGTTTT 57.101 33.333 0.00 0.00 0.00 2.43
446 2378 3.126858 ACATGTTGTTGGCATACATCGTC 59.873 43.478 0.00 0.61 30.45 4.20
452 2384 3.128415 TGTTGGCATACATCGTCCATTTG 59.872 43.478 0.00 0.00 0.00 2.32
453 2385 1.675483 TGGCATACATCGTCCATTTGC 59.325 47.619 0.00 0.00 0.00 3.68
454 2386 1.675483 GGCATACATCGTCCATTTGCA 59.325 47.619 0.00 0.00 0.00 4.08
455 2387 2.541588 GGCATACATCGTCCATTTGCAC 60.542 50.000 0.00 0.00 0.00 4.57
456 2388 2.355756 GCATACATCGTCCATTTGCACT 59.644 45.455 0.00 0.00 0.00 4.40
457 2389 3.181497 GCATACATCGTCCATTTGCACTT 60.181 43.478 0.00 0.00 0.00 3.16
458 2390 4.675146 GCATACATCGTCCATTTGCACTTT 60.675 41.667 0.00 0.00 0.00 2.66
459 2391 5.448496 GCATACATCGTCCATTTGCACTTTA 60.448 40.000 0.00 0.00 0.00 1.85
460 2392 4.419522 ACATCGTCCATTTGCACTTTAC 57.580 40.909 0.00 0.00 0.00 2.01
461 2393 3.818210 ACATCGTCCATTTGCACTTTACA 59.182 39.130 0.00 0.00 0.00 2.41
462 2394 4.458989 ACATCGTCCATTTGCACTTTACAT 59.541 37.500 0.00 0.00 0.00 2.29
463 2395 5.048083 ACATCGTCCATTTGCACTTTACATT 60.048 36.000 0.00 0.00 0.00 2.71
464 2396 4.793071 TCGTCCATTTGCACTTTACATTG 58.207 39.130 0.00 0.00 0.00 2.82
465 2397 4.517075 TCGTCCATTTGCACTTTACATTGA 59.483 37.500 0.00 0.00 0.00 2.57
466 2398 4.616802 CGTCCATTTGCACTTTACATTGAC 59.383 41.667 0.00 0.00 0.00 3.18
467 2399 5.527951 GTCCATTTGCACTTTACATTGACA 58.472 37.500 0.00 0.00 0.00 3.58
468 2400 5.402270 GTCCATTTGCACTTTACATTGACAC 59.598 40.000 0.00 0.00 0.00 3.67
469 2401 5.068329 TCCATTTGCACTTTACATTGACACA 59.932 36.000 0.00 0.00 0.00 3.72
470 2402 5.175491 CCATTTGCACTTTACATTGACACAC 59.825 40.000 0.00 0.00 0.00 3.82
471 2403 4.972514 TTGCACTTTACATTGACACACA 57.027 36.364 0.00 0.00 0.00 3.72
472 2404 5.512753 TTGCACTTTACATTGACACACAT 57.487 34.783 0.00 0.00 0.00 3.21
473 2405 6.625873 TTGCACTTTACATTGACACACATA 57.374 33.333 0.00 0.00 0.00 2.29
474 2406 6.816134 TGCACTTTACATTGACACACATAT 57.184 33.333 0.00 0.00 0.00 1.78
475 2407 7.913674 TGCACTTTACATTGACACACATATA 57.086 32.000 0.00 0.00 0.00 0.86
476 2408 8.504812 TGCACTTTACATTGACACACATATAT 57.495 30.769 0.00 0.00 0.00 0.86
477 2409 9.606631 TGCACTTTACATTGACACACATATATA 57.393 29.630 0.00 0.00 0.00 0.86
504 2436 9.456147 AGTAAATATATGTGTTACCAAAGTGCA 57.544 29.630 3.27 0.00 0.00 4.57
507 2439 9.988815 AAATATATGTGTTACCAAAGTGCAAAA 57.011 25.926 0.00 0.00 0.00 2.44
510 2442 8.900983 ATATGTGTTACCAAAGTGCAAAATTT 57.099 26.923 0.00 0.00 0.00 1.82
511 2443 7.622893 ATGTGTTACCAAAGTGCAAAATTTT 57.377 28.000 0.00 0.00 0.00 1.82
512 2444 6.835914 TGTGTTACCAAAGTGCAAAATTTTG 58.164 32.000 23.74 23.74 41.03 2.44
513 2445 6.650807 TGTGTTACCAAAGTGCAAAATTTTGA 59.349 30.769 30.40 14.99 37.61 2.69
514 2446 7.335422 TGTGTTACCAAAGTGCAAAATTTTGAT 59.665 29.630 30.40 14.69 37.61 2.57
515 2447 8.821894 GTGTTACCAAAGTGCAAAATTTTGATA 58.178 29.630 30.40 17.18 37.61 2.15
516 2448 9.383519 TGTTACCAAAGTGCAAAATTTTGATAA 57.616 25.926 30.40 14.44 37.61 1.75
517 2449 9.862585 GTTACCAAAGTGCAAAATTTTGATAAG 57.137 29.630 30.40 15.31 37.61 1.73
518 2450 9.606631 TTACCAAAGTGCAAAATTTTGATAAGT 57.393 25.926 30.40 18.99 37.61 2.24
520 2452 9.606631 ACCAAAGTGCAAAATTTTGATAAGTAA 57.393 25.926 30.40 6.94 37.61 2.24
525 2457 9.643693 AGTGCAAAATTTTGATAAGTAAGATGG 57.356 29.630 30.40 3.32 40.55 3.51
526 2458 8.872845 GTGCAAAATTTTGATAAGTAAGATGGG 58.127 33.333 30.40 2.71 40.55 4.00
527 2459 8.040132 TGCAAAATTTTGATAAGTAAGATGGGG 58.960 33.333 30.40 2.36 40.55 4.96
528 2460 8.257306 GCAAAATTTTGATAAGTAAGATGGGGA 58.743 33.333 30.40 0.00 40.55 4.81
531 2463 9.547279 AAATTTTGATAAGTAAGATGGGGAAGT 57.453 29.630 0.00 0.00 0.00 3.01
532 2464 8.753497 ATTTTGATAAGTAAGATGGGGAAGTC 57.247 34.615 0.00 0.00 0.00 3.01
533 2465 7.510675 TTTGATAAGTAAGATGGGGAAGTCT 57.489 36.000 0.00 0.00 0.00 3.24
534 2466 7.510675 TTGATAAGTAAGATGGGGAAGTCTT 57.489 36.000 0.00 0.00 38.22 3.01
535 2467 6.889198 TGATAAGTAAGATGGGGAAGTCTTG 58.111 40.000 0.00 0.00 36.23 3.02
536 2468 3.636153 AGTAAGATGGGGAAGTCTTGC 57.364 47.619 0.00 0.00 37.34 4.01
537 2469 3.185455 AGTAAGATGGGGAAGTCTTGCT 58.815 45.455 3.94 0.81 40.86 3.91
538 2470 2.797177 AAGATGGGGAAGTCTTGCTC 57.203 50.000 3.94 0.00 33.64 4.26
539 2471 0.915364 AGATGGGGAAGTCTTGCTCC 59.085 55.000 0.96 3.43 0.00 4.70
540 2472 0.462759 GATGGGGAAGTCTTGCTCCG 60.463 60.000 0.96 0.00 0.00 4.63
541 2473 0.909610 ATGGGGAAGTCTTGCTCCGA 60.910 55.000 0.96 0.00 0.00 4.55
542 2474 0.909610 TGGGGAAGTCTTGCTCCGAT 60.910 55.000 0.96 0.00 0.00 4.18
543 2475 0.462759 GGGGAAGTCTTGCTCCGATG 60.463 60.000 3.94 0.00 0.00 3.84
544 2476 0.462759 GGGAAGTCTTGCTCCGATGG 60.463 60.000 3.94 0.00 0.00 3.51
545 2477 0.537188 GGAAGTCTTGCTCCGATGGA 59.463 55.000 0.00 0.00 0.00 3.41
553 2485 4.302622 CTCCGATGGAGGTGGGAT 57.697 61.111 4.89 0.00 45.43 3.85
554 2486 1.750930 CTCCGATGGAGGTGGGATG 59.249 63.158 4.89 0.00 45.43 3.51
555 2487 1.762522 CTCCGATGGAGGTGGGATGG 61.763 65.000 4.89 0.00 45.43 3.51
556 2488 2.072487 CCGATGGAGGTGGGATGGT 61.072 63.158 0.00 0.00 0.00 3.55
557 2489 0.762842 CCGATGGAGGTGGGATGGTA 60.763 60.000 0.00 0.00 0.00 3.25
558 2490 1.352083 CGATGGAGGTGGGATGGTAT 58.648 55.000 0.00 0.00 0.00 2.73
559 2491 2.536066 CGATGGAGGTGGGATGGTATA 58.464 52.381 0.00 0.00 0.00 1.47
560 2492 3.107601 CGATGGAGGTGGGATGGTATAT 58.892 50.000 0.00 0.00 0.00 0.86
561 2493 4.286707 CGATGGAGGTGGGATGGTATATA 58.713 47.826 0.00 0.00 0.00 0.86
562 2494 4.901849 CGATGGAGGTGGGATGGTATATAT 59.098 45.833 0.00 0.00 0.00 0.86
563 2495 6.075315 CGATGGAGGTGGGATGGTATATATA 58.925 44.000 0.00 0.00 0.00 0.86
564 2496 6.209589 CGATGGAGGTGGGATGGTATATATAG 59.790 46.154 0.00 0.00 0.00 1.31
565 2497 5.788430 TGGAGGTGGGATGGTATATATAGG 58.212 45.833 0.00 0.00 0.00 2.57
566 2498 5.502081 TGGAGGTGGGATGGTATATATAGGA 59.498 44.000 0.00 0.00 0.00 2.94
567 2499 6.078664 GGAGGTGGGATGGTATATATAGGAG 58.921 48.000 0.00 0.00 0.00 3.69
568 2500 6.125860 GGAGGTGGGATGGTATATATAGGAGA 60.126 46.154 0.00 0.00 0.00 3.71
569 2501 7.312162 AGGTGGGATGGTATATATAGGAGAA 57.688 40.000 0.00 0.00 0.00 2.87
570 2502 7.729350 AGGTGGGATGGTATATATAGGAGAAA 58.271 38.462 0.00 0.00 0.00 2.52
571 2503 7.846823 AGGTGGGATGGTATATATAGGAGAAAG 59.153 40.741 0.00 0.00 0.00 2.62
572 2504 7.071321 GGTGGGATGGTATATATAGGAGAAAGG 59.929 44.444 0.00 0.00 0.00 3.11
573 2505 7.071321 GTGGGATGGTATATATAGGAGAAAGGG 59.929 44.444 0.00 0.00 0.00 3.95
574 2506 7.034649 TGGGATGGTATATATAGGAGAAAGGGA 60.035 40.741 0.00 0.00 0.00 4.20
575 2507 7.849904 GGGATGGTATATATAGGAGAAAGGGAA 59.150 40.741 0.00 0.00 0.00 3.97
576 2508 8.929487 GGATGGTATATATAGGAGAAAGGGAAG 58.071 40.741 0.00 0.00 0.00 3.46
577 2509 9.716556 GATGGTATATATAGGAGAAAGGGAAGA 57.283 37.037 0.00 0.00 0.00 2.87
579 2511 9.907819 TGGTATATATAGGAGAAAGGGAAGAAA 57.092 33.333 0.00 0.00 0.00 2.52
581 2513 9.878667 GTATATATAGGAGAAAGGGAAGAAAGC 57.121 37.037 0.00 0.00 0.00 3.51
582 2514 6.831664 ATATAGGAGAAAGGGAAGAAAGCA 57.168 37.500 0.00 0.00 0.00 3.91
583 2515 3.147553 AGGAGAAAGGGAAGAAAGCAC 57.852 47.619 0.00 0.00 0.00 4.40
584 2516 2.713708 AGGAGAAAGGGAAGAAAGCACT 59.286 45.455 0.00 0.00 0.00 4.40
585 2517 3.910627 AGGAGAAAGGGAAGAAAGCACTA 59.089 43.478 0.00 0.00 0.00 2.74
586 2518 4.351111 AGGAGAAAGGGAAGAAAGCACTAA 59.649 41.667 0.00 0.00 0.00 2.24
587 2519 5.070685 GGAGAAAGGGAAGAAAGCACTAAA 58.929 41.667 0.00 0.00 0.00 1.85
588 2520 5.048643 GGAGAAAGGGAAGAAAGCACTAAAC 60.049 44.000 0.00 0.00 0.00 2.01
589 2521 5.696030 AGAAAGGGAAGAAAGCACTAAACT 58.304 37.500 0.00 0.00 0.00 2.66
590 2522 6.838382 AGAAAGGGAAGAAAGCACTAAACTA 58.162 36.000 0.00 0.00 0.00 2.24
591 2523 6.711194 AGAAAGGGAAGAAAGCACTAAACTAC 59.289 38.462 0.00 0.00 0.00 2.73
592 2524 5.562298 AGGGAAGAAAGCACTAAACTACA 57.438 39.130 0.00 0.00 0.00 2.74
593 2525 6.128138 AGGGAAGAAAGCACTAAACTACAT 57.872 37.500 0.00 0.00 0.00 2.29
594 2526 5.940470 AGGGAAGAAAGCACTAAACTACATG 59.060 40.000 0.00 0.00 0.00 3.21
595 2527 5.938125 GGGAAGAAAGCACTAAACTACATGA 59.062 40.000 0.00 0.00 0.00 3.07
596 2528 6.092807 GGGAAGAAAGCACTAAACTACATGAG 59.907 42.308 0.00 0.00 0.00 2.90
597 2529 6.402658 GGAAGAAAGCACTAAACTACATGAGC 60.403 42.308 0.00 0.00 0.00 4.26
598 2530 5.799213 AGAAAGCACTAAACTACATGAGCT 58.201 37.500 0.00 0.00 0.00 4.09
599 2531 5.641209 AGAAAGCACTAAACTACATGAGCTG 59.359 40.000 0.00 0.00 0.00 4.24
600 2532 4.808414 AGCACTAAACTACATGAGCTGA 57.192 40.909 0.00 0.00 0.00 4.26
601 2533 4.753233 AGCACTAAACTACATGAGCTGAG 58.247 43.478 0.00 0.00 0.00 3.35
602 2534 4.221703 AGCACTAAACTACATGAGCTGAGT 59.778 41.667 0.00 0.00 0.00 3.41
603 2535 4.932200 GCACTAAACTACATGAGCTGAGTT 59.068 41.667 0.00 0.00 33.60 3.01
604 2536 5.163913 GCACTAAACTACATGAGCTGAGTTG 60.164 44.000 0.00 0.00 32.57 3.16
605 2537 5.349817 CACTAAACTACATGAGCTGAGTTGG 59.650 44.000 0.00 1.61 32.57 3.77
606 2538 2.393271 ACTACATGAGCTGAGTTGGC 57.607 50.000 0.00 0.00 0.00 4.52
607 2539 1.065854 ACTACATGAGCTGAGTTGGCC 60.066 52.381 0.00 0.00 0.00 5.36
608 2540 0.253044 TACATGAGCTGAGTTGGCCC 59.747 55.000 0.00 0.00 0.00 5.80
609 2541 1.751927 CATGAGCTGAGTTGGCCCC 60.752 63.158 0.00 0.00 0.00 5.80
610 2542 2.233566 ATGAGCTGAGTTGGCCCCA 61.234 57.895 0.00 0.00 0.00 4.96
611 2543 2.360475 GAGCTGAGTTGGCCCCAC 60.360 66.667 0.00 0.00 0.00 4.61
612 2544 2.856000 AGCTGAGTTGGCCCCACT 60.856 61.111 0.00 1.30 0.00 4.00
613 2545 1.538876 AGCTGAGTTGGCCCCACTA 60.539 57.895 0.00 0.00 0.00 2.74
614 2546 1.133809 AGCTGAGTTGGCCCCACTAA 61.134 55.000 0.00 0.00 0.00 2.24
615 2547 0.960861 GCTGAGTTGGCCCCACTAAC 60.961 60.000 0.00 0.00 39.91 2.34
616 2548 0.673644 CTGAGTTGGCCCCACTAACG 60.674 60.000 0.00 0.00 44.04 3.18
617 2549 1.373812 GAGTTGGCCCCACTAACGT 59.626 57.895 0.00 0.00 44.04 3.99
618 2550 0.953960 GAGTTGGCCCCACTAACGTG 60.954 60.000 0.00 0.00 44.04 4.49
619 2551 1.228033 GTTGGCCCCACTAACGTGT 60.228 57.895 0.00 0.00 39.55 4.49
620 2552 0.820482 GTTGGCCCCACTAACGTGTT 60.820 55.000 0.00 0.00 39.55 3.32
621 2553 0.106619 TTGGCCCCACTAACGTGTTT 60.107 50.000 0.00 0.00 39.55 2.83
622 2554 0.820074 TGGCCCCACTAACGTGTTTG 60.820 55.000 0.00 0.00 39.55 2.93
623 2555 0.820482 GGCCCCACTAACGTGTTTGT 60.820 55.000 0.00 0.00 39.55 2.83
624 2556 0.589708 GCCCCACTAACGTGTTTGTC 59.410 55.000 0.00 0.00 39.55 3.18
625 2557 1.232119 CCCCACTAACGTGTTTGTCC 58.768 55.000 0.00 0.00 39.55 4.02
626 2558 0.863144 CCCACTAACGTGTTTGTCCG 59.137 55.000 0.00 0.00 39.55 4.79
627 2559 1.574134 CCACTAACGTGTTTGTCCGT 58.426 50.000 0.00 0.00 39.55 4.69
628 2560 1.259507 CCACTAACGTGTTTGTCCGTG 59.740 52.381 0.00 0.00 39.55 4.94
629 2561 0.932399 ACTAACGTGTTTGTCCGTGC 59.068 50.000 0.00 0.00 37.38 5.34
630 2562 0.111442 CTAACGTGTTTGTCCGTGCG 60.111 55.000 0.00 0.00 37.38 5.34
631 2563 0.805322 TAACGTGTTTGTCCGTGCGT 60.805 50.000 0.00 0.00 37.38 5.24
632 2564 2.053465 CGTGTTTGTCCGTGCGTG 60.053 61.111 0.00 0.00 0.00 5.34
633 2565 2.351888 GTGTTTGTCCGTGCGTGC 60.352 61.111 0.00 0.00 0.00 5.34
634 2566 2.512745 TGTTTGTCCGTGCGTGCT 60.513 55.556 0.00 0.00 0.00 4.40
635 2567 2.248431 GTTTGTCCGTGCGTGCTC 59.752 61.111 0.00 0.00 0.00 4.26
636 2568 2.970324 TTTGTCCGTGCGTGCTCC 60.970 61.111 0.00 0.00 0.00 4.70
637 2569 3.741830 TTTGTCCGTGCGTGCTCCA 62.742 57.895 0.00 0.00 0.00 3.86
638 2570 3.529341 TTGTCCGTGCGTGCTCCAT 62.529 57.895 0.00 0.00 0.00 3.41
639 2571 3.490759 GTCCGTGCGTGCTCCATG 61.491 66.667 0.00 0.00 0.00 3.66
640 2572 3.690280 TCCGTGCGTGCTCCATGA 61.690 61.111 0.00 0.00 0.00 3.07
641 2573 3.490759 CCGTGCGTGCTCCATGAC 61.491 66.667 0.00 0.00 0.00 3.06
642 2574 2.433145 CGTGCGTGCTCCATGACT 60.433 61.111 0.00 0.00 0.00 3.41
643 2575 2.733671 CGTGCGTGCTCCATGACTG 61.734 63.158 0.00 0.00 0.00 3.51
644 2576 2.743538 TGCGTGCTCCATGACTGC 60.744 61.111 0.00 0.00 0.00 4.40
645 2577 2.435586 GCGTGCTCCATGACTGCT 60.436 61.111 0.00 0.00 0.00 4.24
715 2647 2.048498 CGACGTTGTTCGAGTGAATGA 58.952 47.619 0.00 0.00 41.78 2.57
927 2861 4.835456 AGCCCGCCCCCTCCATTA 62.835 66.667 0.00 0.00 0.00 1.90
1273 3208 1.299976 GTGGATCTGGGTGGTGGAC 59.700 63.158 0.00 0.00 0.00 4.02
1274 3209 1.151921 TGGATCTGGGTGGTGGACA 60.152 57.895 0.00 0.00 0.00 4.02
1871 3913 1.475034 GGCTGCCGAATAGATGTTGGA 60.475 52.381 1.35 0.00 0.00 3.53
2225 4305 6.690530 CCAATATTTTGAAGATGGTGTGTGT 58.309 36.000 0.00 0.00 34.60 3.72
2226 4306 6.587226 CCAATATTTTGAAGATGGTGTGTGTG 59.413 38.462 0.00 0.00 34.60 3.82
2227 4307 6.899393 ATATTTTGAAGATGGTGTGTGTGT 57.101 33.333 0.00 0.00 0.00 3.72
2228 4308 4.368874 TTTTGAAGATGGTGTGTGTGTG 57.631 40.909 0.00 0.00 0.00 3.82
2416 4523 5.861727 AGTTCCACGATAACCTTACAACTT 58.138 37.500 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 2059 6.128309 GGCGCAAATTGATTTGGAAGTAAAAT 60.128 34.615 10.83 0.00 45.44 1.82
145 2068 2.184448 CTACGGCGCAAATTGATTTGG 58.816 47.619 10.83 8.75 45.44 3.28
182 2105 3.387050 AGTTCAATCCCGTATCCCACTAC 59.613 47.826 0.00 0.00 0.00 2.73
202 2125 0.747255 ACTTGCGTGTCAGTCTGAGT 59.253 50.000 1.75 0.00 0.00 3.41
240 2172 0.391130 GGCCATATAGCGATGCGGAA 60.391 55.000 0.00 0.00 0.00 4.30
272 2204 2.887152 GAGGCTTCCATGTTTGACTGTT 59.113 45.455 0.00 0.00 0.00 3.16
302 2234 6.861065 TCCAAATGTTGTTTAGACTGTCTC 57.139 37.500 14.62 0.53 0.00 3.36
329 2261 3.130280 TCATCTTGTCAGCTCTTTGCA 57.870 42.857 0.00 0.00 45.94 4.08
340 2272 2.019984 GTGCTTGGGGATCATCTTGTC 58.980 52.381 0.00 0.00 0.00 3.18
341 2273 1.679944 CGTGCTTGGGGATCATCTTGT 60.680 52.381 0.00 0.00 0.00 3.16
379 2311 6.899393 AAAAACAAGCATTAGATCACTGGA 57.101 33.333 0.00 0.00 0.00 3.86
401 2333 7.136885 TGTAGGAATAAGAGACATAGGGGAAA 58.863 38.462 0.00 0.00 0.00 3.13
404 2336 6.498651 ACATGTAGGAATAAGAGACATAGGGG 59.501 42.308 0.00 0.00 0.00 4.79
408 2340 9.599866 CAACAACATGTAGGAATAAGAGACATA 57.400 33.333 0.00 0.00 0.00 2.29
446 2378 5.175491 GTGTGTCAATGTAAAGTGCAAATGG 59.825 40.000 0.00 0.00 0.00 3.16
487 2419 7.335422 TCAAAATTTTGCACTTTGGTAACACAT 59.665 29.630 23.36 0.00 41.87 3.21
488 2420 6.650807 TCAAAATTTTGCACTTTGGTAACACA 59.349 30.769 23.36 0.56 41.87 3.72
489 2421 7.066374 TCAAAATTTTGCACTTTGGTAACAC 57.934 32.000 23.36 0.00 41.87 3.32
490 2422 7.856145 ATCAAAATTTTGCACTTTGGTAACA 57.144 28.000 23.36 4.59 40.97 2.41
491 2423 9.862585 CTTATCAAAATTTTGCACTTTGGTAAC 57.137 29.630 23.36 0.00 33.07 2.50
492 2424 9.606631 ACTTATCAAAATTTTGCACTTTGGTAA 57.393 25.926 23.36 7.50 34.72 2.85
494 2426 9.606631 TTACTTATCAAAATTTTGCACTTTGGT 57.393 25.926 23.36 16.34 38.05 3.67
499 2431 9.643693 CCATCTTACTTATCAAAATTTTGCACT 57.356 29.630 23.36 13.72 38.05 4.40
500 2432 8.872845 CCCATCTTACTTATCAAAATTTTGCAC 58.127 33.333 23.36 0.00 38.05 4.57
501 2433 8.040132 CCCCATCTTACTTATCAAAATTTTGCA 58.960 33.333 23.36 13.90 38.05 4.08
502 2434 8.257306 TCCCCATCTTACTTATCAAAATTTTGC 58.743 33.333 23.36 0.00 38.05 3.68
505 2437 9.547279 ACTTCCCCATCTTACTTATCAAAATTT 57.453 29.630 0.00 0.00 0.00 1.82
506 2438 9.190317 GACTTCCCCATCTTACTTATCAAAATT 57.810 33.333 0.00 0.00 0.00 1.82
507 2439 8.560903 AGACTTCCCCATCTTACTTATCAAAAT 58.439 33.333 0.00 0.00 0.00 1.82
508 2440 7.928873 AGACTTCCCCATCTTACTTATCAAAA 58.071 34.615 0.00 0.00 0.00 2.44
509 2441 7.510675 AGACTTCCCCATCTTACTTATCAAA 57.489 36.000 0.00 0.00 0.00 2.69
510 2442 7.338710 CAAGACTTCCCCATCTTACTTATCAA 58.661 38.462 0.00 0.00 33.35 2.57
511 2443 6.632672 GCAAGACTTCCCCATCTTACTTATCA 60.633 42.308 0.00 0.00 33.35 2.15
512 2444 5.760743 GCAAGACTTCCCCATCTTACTTATC 59.239 44.000 0.00 0.00 33.35 1.75
513 2445 5.430089 AGCAAGACTTCCCCATCTTACTTAT 59.570 40.000 0.00 0.00 33.35 1.73
514 2446 4.783227 AGCAAGACTTCCCCATCTTACTTA 59.217 41.667 0.00 0.00 33.35 2.24
515 2447 3.589288 AGCAAGACTTCCCCATCTTACTT 59.411 43.478 0.00 0.00 33.35 2.24
516 2448 3.185455 AGCAAGACTTCCCCATCTTACT 58.815 45.455 0.00 0.00 33.35 2.24
517 2449 3.536570 GAGCAAGACTTCCCCATCTTAC 58.463 50.000 0.00 0.00 33.35 2.34
518 2450 2.505819 GGAGCAAGACTTCCCCATCTTA 59.494 50.000 0.00 0.00 33.35 2.10
519 2451 1.283321 GGAGCAAGACTTCCCCATCTT 59.717 52.381 0.00 0.00 35.51 2.40
520 2452 0.915364 GGAGCAAGACTTCCCCATCT 59.085 55.000 0.00 0.00 0.00 2.90
521 2453 0.462759 CGGAGCAAGACTTCCCCATC 60.463 60.000 0.00 0.00 0.00 3.51
522 2454 0.909610 TCGGAGCAAGACTTCCCCAT 60.910 55.000 0.00 0.00 0.00 4.00
523 2455 0.909610 ATCGGAGCAAGACTTCCCCA 60.910 55.000 0.00 0.00 0.00 4.96
524 2456 0.462759 CATCGGAGCAAGACTTCCCC 60.463 60.000 0.00 0.00 0.00 4.81
525 2457 0.462759 CCATCGGAGCAAGACTTCCC 60.463 60.000 0.00 0.00 0.00 3.97
526 2458 0.537188 TCCATCGGAGCAAGACTTCC 59.463 55.000 0.00 0.00 0.00 3.46
527 2459 1.933247 CTCCATCGGAGCAAGACTTC 58.067 55.000 0.00 0.00 43.29 3.01
537 2469 1.766059 CCATCCCACCTCCATCGGA 60.766 63.158 0.00 0.00 0.00 4.55
538 2470 0.762842 TACCATCCCACCTCCATCGG 60.763 60.000 0.00 0.00 0.00 4.18
539 2471 1.352083 ATACCATCCCACCTCCATCG 58.648 55.000 0.00 0.00 0.00 3.84
540 2472 6.498651 CCTATATATACCATCCCACCTCCATC 59.501 46.154 0.00 0.00 0.00 3.51
541 2473 6.165862 TCCTATATATACCATCCCACCTCCAT 59.834 42.308 0.00 0.00 0.00 3.41
542 2474 5.502081 TCCTATATATACCATCCCACCTCCA 59.498 44.000 0.00 0.00 0.00 3.86
543 2475 6.039415 TCCTATATATACCATCCCACCTCC 57.961 45.833 0.00 0.00 0.00 4.30
544 2476 6.923670 TCTCCTATATATACCATCCCACCTC 58.076 44.000 0.00 0.00 0.00 3.85
545 2477 6.945322 TCTCCTATATATACCATCCCACCT 57.055 41.667 0.00 0.00 0.00 4.00
546 2478 7.071321 CCTTTCTCCTATATATACCATCCCACC 59.929 44.444 0.00 0.00 0.00 4.61
547 2479 7.071321 CCCTTTCTCCTATATATACCATCCCAC 59.929 44.444 0.00 0.00 0.00 4.61
548 2480 7.034649 TCCCTTTCTCCTATATATACCATCCCA 60.035 40.741 0.00 0.00 0.00 4.37
549 2481 7.371043 TCCCTTTCTCCTATATATACCATCCC 58.629 42.308 0.00 0.00 0.00 3.85
550 2482 8.855804 TTCCCTTTCTCCTATATATACCATCC 57.144 38.462 0.00 0.00 0.00 3.51
551 2483 9.716556 TCTTCCCTTTCTCCTATATATACCATC 57.283 37.037 0.00 0.00 0.00 3.51
553 2485 9.907819 TTTCTTCCCTTTCTCCTATATATACCA 57.092 33.333 0.00 0.00 0.00 3.25
555 2487 9.878667 GCTTTCTTCCCTTTCTCCTATATATAC 57.121 37.037 0.00 0.00 0.00 1.47
556 2488 9.615660 TGCTTTCTTCCCTTTCTCCTATATATA 57.384 33.333 0.00 0.00 0.00 0.86
557 2489 8.379331 GTGCTTTCTTCCCTTTCTCCTATATAT 58.621 37.037 0.00 0.00 0.00 0.86
558 2490 7.569111 AGTGCTTTCTTCCCTTTCTCCTATATA 59.431 37.037 0.00 0.00 0.00 0.86
559 2491 6.388394 AGTGCTTTCTTCCCTTTCTCCTATAT 59.612 38.462 0.00 0.00 0.00 0.86
560 2492 5.726793 AGTGCTTTCTTCCCTTTCTCCTATA 59.273 40.000 0.00 0.00 0.00 1.31
561 2493 4.538089 AGTGCTTTCTTCCCTTTCTCCTAT 59.462 41.667 0.00 0.00 0.00 2.57
562 2494 3.910627 AGTGCTTTCTTCCCTTTCTCCTA 59.089 43.478 0.00 0.00 0.00 2.94
563 2495 2.713708 AGTGCTTTCTTCCCTTTCTCCT 59.286 45.455 0.00 0.00 0.00 3.69
564 2496 3.147553 AGTGCTTTCTTCCCTTTCTCC 57.852 47.619 0.00 0.00 0.00 3.71
565 2497 5.765677 AGTTTAGTGCTTTCTTCCCTTTCTC 59.234 40.000 0.00 0.00 0.00 2.87
566 2498 5.696030 AGTTTAGTGCTTTCTTCCCTTTCT 58.304 37.500 0.00 0.00 0.00 2.52
567 2499 6.485648 TGTAGTTTAGTGCTTTCTTCCCTTTC 59.514 38.462 0.00 0.00 0.00 2.62
568 2500 6.362248 TGTAGTTTAGTGCTTTCTTCCCTTT 58.638 36.000 0.00 0.00 0.00 3.11
569 2501 5.937111 TGTAGTTTAGTGCTTTCTTCCCTT 58.063 37.500 0.00 0.00 0.00 3.95
570 2502 5.562298 TGTAGTTTAGTGCTTTCTTCCCT 57.438 39.130 0.00 0.00 0.00 4.20
571 2503 5.938125 TCATGTAGTTTAGTGCTTTCTTCCC 59.062 40.000 0.00 0.00 0.00 3.97
572 2504 6.402658 GCTCATGTAGTTTAGTGCTTTCTTCC 60.403 42.308 0.00 0.00 0.00 3.46
573 2505 6.370166 AGCTCATGTAGTTTAGTGCTTTCTTC 59.630 38.462 0.00 0.00 0.00 2.87
574 2506 6.148480 CAGCTCATGTAGTTTAGTGCTTTCTT 59.852 38.462 0.00 0.00 0.00 2.52
575 2507 5.641209 CAGCTCATGTAGTTTAGTGCTTTCT 59.359 40.000 0.00 0.00 0.00 2.52
576 2508 5.639506 TCAGCTCATGTAGTTTAGTGCTTTC 59.360 40.000 0.00 0.00 0.00 2.62
577 2509 5.551233 TCAGCTCATGTAGTTTAGTGCTTT 58.449 37.500 0.00 0.00 0.00 3.51
578 2510 5.152623 TCAGCTCATGTAGTTTAGTGCTT 57.847 39.130 0.00 0.00 0.00 3.91
579 2511 4.221703 ACTCAGCTCATGTAGTTTAGTGCT 59.778 41.667 0.00 0.00 0.00 4.40
580 2512 4.499183 ACTCAGCTCATGTAGTTTAGTGC 58.501 43.478 0.00 0.00 0.00 4.40
581 2513 5.349817 CCAACTCAGCTCATGTAGTTTAGTG 59.650 44.000 0.00 0.00 31.23 2.74
582 2514 5.482908 CCAACTCAGCTCATGTAGTTTAGT 58.517 41.667 0.00 0.00 31.23 2.24
583 2515 4.331168 GCCAACTCAGCTCATGTAGTTTAG 59.669 45.833 0.00 0.00 31.23 1.85
584 2516 4.253685 GCCAACTCAGCTCATGTAGTTTA 58.746 43.478 0.00 0.00 31.23 2.01
585 2517 3.077359 GCCAACTCAGCTCATGTAGTTT 58.923 45.455 0.00 0.00 31.23 2.66
586 2518 2.616510 GGCCAACTCAGCTCATGTAGTT 60.617 50.000 0.00 0.00 32.76 2.24
587 2519 1.065854 GGCCAACTCAGCTCATGTAGT 60.066 52.381 0.00 0.00 0.00 2.73
588 2520 1.661341 GGCCAACTCAGCTCATGTAG 58.339 55.000 0.00 0.00 0.00 2.74
589 2521 0.253044 GGGCCAACTCAGCTCATGTA 59.747 55.000 4.39 0.00 0.00 2.29
590 2522 1.001641 GGGCCAACTCAGCTCATGT 60.002 57.895 4.39 0.00 0.00 3.21
591 2523 1.751927 GGGGCCAACTCAGCTCATG 60.752 63.158 4.39 0.00 29.87 3.07
592 2524 2.233566 TGGGGCCAACTCAGCTCAT 61.234 57.895 4.39 0.00 29.87 2.90
593 2525 2.853542 TGGGGCCAACTCAGCTCA 60.854 61.111 4.39 0.00 29.87 4.26
594 2526 1.553690 TAGTGGGGCCAACTCAGCTC 61.554 60.000 19.17 0.00 0.00 4.09
595 2527 1.133809 TTAGTGGGGCCAACTCAGCT 61.134 55.000 19.17 0.00 0.00 4.24
596 2528 0.960861 GTTAGTGGGGCCAACTCAGC 60.961 60.000 19.17 5.23 0.00 4.26
597 2529 0.673644 CGTTAGTGGGGCCAACTCAG 60.674 60.000 19.17 6.39 0.00 3.35
598 2530 1.373435 CGTTAGTGGGGCCAACTCA 59.627 57.895 19.17 3.11 0.00 3.41
599 2531 0.953960 CACGTTAGTGGGGCCAACTC 60.954 60.000 19.17 2.84 44.34 3.01
600 2532 1.072505 CACGTTAGTGGGGCCAACT 59.927 57.895 19.57 19.57 44.34 3.16
601 2533 3.663202 CACGTTAGTGGGGCCAAC 58.337 61.111 1.60 1.60 44.34 3.77
610 2542 0.932399 GCACGGACAAACACGTTAGT 59.068 50.000 0.00 0.00 42.04 2.24
611 2543 0.111442 CGCACGGACAAACACGTTAG 60.111 55.000 0.00 0.00 42.04 2.34
612 2544 0.805322 ACGCACGGACAAACACGTTA 60.805 50.000 0.00 0.00 42.04 3.18
613 2545 2.101835 ACGCACGGACAAACACGTT 61.102 52.632 0.00 0.00 42.04 3.99
614 2546 2.509786 ACGCACGGACAAACACGT 60.510 55.556 0.00 0.00 45.25 4.49
615 2547 2.053465 CACGCACGGACAAACACG 60.053 61.111 0.00 0.00 0.00 4.49
616 2548 2.351888 GCACGCACGGACAAACAC 60.352 61.111 0.00 0.00 0.00 3.32
617 2549 2.512745 AGCACGCACGGACAAACA 60.513 55.556 0.00 0.00 0.00 2.83
618 2550 2.248431 GAGCACGCACGGACAAAC 59.752 61.111 0.00 0.00 0.00 2.93
619 2551 2.970324 GGAGCACGCACGGACAAA 60.970 61.111 0.00 0.00 0.00 2.83
620 2552 3.529341 ATGGAGCACGCACGGACAA 62.529 57.895 0.00 0.00 0.00 3.18
621 2553 4.002506 ATGGAGCACGCACGGACA 62.003 61.111 0.00 0.00 0.00 4.02
622 2554 3.490759 CATGGAGCACGCACGGAC 61.491 66.667 0.00 0.00 0.00 4.79
623 2555 3.690280 TCATGGAGCACGCACGGA 61.690 61.111 0.00 0.00 0.00 4.69
624 2556 3.490759 GTCATGGAGCACGCACGG 61.491 66.667 0.00 0.00 0.00 4.94
625 2557 2.433145 AGTCATGGAGCACGCACG 60.433 61.111 0.00 0.00 0.00 5.34
626 2558 3.031964 GCAGTCATGGAGCACGCAC 62.032 63.158 0.00 0.00 0.00 5.34
627 2559 2.743538 GCAGTCATGGAGCACGCA 60.744 61.111 0.00 0.00 0.00 5.24
628 2560 2.435586 AGCAGTCATGGAGCACGC 60.436 61.111 7.49 1.00 0.00 5.34
629 2561 2.163390 CGAGCAGTCATGGAGCACG 61.163 63.158 9.33 9.33 36.19 5.34
630 2562 1.812922 CCGAGCAGTCATGGAGCAC 60.813 63.158 7.49 1.33 0.00 4.40
631 2563 2.580815 CCGAGCAGTCATGGAGCA 59.419 61.111 7.49 0.00 0.00 4.26
632 2564 2.202987 CCCGAGCAGTCATGGAGC 60.203 66.667 0.00 0.00 0.00 4.70
633 2565 2.202987 GCCCGAGCAGTCATGGAG 60.203 66.667 0.00 0.00 39.53 3.86
634 2566 3.785859 GGCCCGAGCAGTCATGGA 61.786 66.667 0.00 0.00 42.56 3.41
635 2567 2.898920 ATTGGCCCGAGCAGTCATGG 62.899 60.000 0.00 0.00 42.56 3.66
636 2568 0.179048 TATTGGCCCGAGCAGTCATG 60.179 55.000 0.00 0.00 42.56 3.07
637 2569 0.107456 CTATTGGCCCGAGCAGTCAT 59.893 55.000 0.00 0.00 42.56 3.06
638 2570 1.522092 CTATTGGCCCGAGCAGTCA 59.478 57.895 0.00 0.00 42.56 3.41
639 2571 1.889573 GCTATTGGCCCGAGCAGTC 60.890 63.158 14.08 0.00 42.56 3.51
640 2572 2.190578 GCTATTGGCCCGAGCAGT 59.809 61.111 14.08 0.00 42.56 4.40
641 2573 1.596477 GAGCTATTGGCCCGAGCAG 60.596 63.158 19.44 3.51 42.56 4.24
642 2574 2.505982 GAGCTATTGGCCCGAGCA 59.494 61.111 19.44 0.00 42.56 4.26
643 2575 2.281139 GGAGCTATTGGCCCGAGC 60.281 66.667 11.67 11.67 43.05 5.03
644 2576 1.070445 CAGGAGCTATTGGCCCGAG 59.930 63.158 0.00 0.00 43.05 4.63
645 2577 1.689233 ACAGGAGCTATTGGCCCGA 60.689 57.895 0.00 0.00 43.05 5.14
927 2861 0.477795 AGGAAAGGGGCAGGGTAAGT 60.478 55.000 0.00 0.00 0.00 2.24
1273 3208 1.499056 GCGGCGCATGAATCCTATG 59.501 57.895 29.21 0.00 0.00 2.23
1274 3209 1.672356 GGCGGCGCATGAATCCTAT 60.672 57.895 34.36 0.00 0.00 2.57
1325 3261 1.741706 CATCGAGCCACTCAAAATGCT 59.258 47.619 0.00 0.00 36.62 3.79
1871 3913 1.304134 GGGCCCATTTTCTCACGGT 60.304 57.895 19.95 0.00 0.00 4.83
1960 4003 2.625282 AGTTAGAGGTGGGCTAGTGT 57.375 50.000 0.00 0.00 0.00 3.55
2225 4305 1.768275 ACCTCAATCTCACCACACACA 59.232 47.619 0.00 0.00 0.00 3.72
2226 4306 2.146342 CACCTCAATCTCACCACACAC 58.854 52.381 0.00 0.00 0.00 3.82
2227 4307 1.768275 ACACCTCAATCTCACCACACA 59.232 47.619 0.00 0.00 0.00 3.72
2228 4308 2.550830 ACACCTCAATCTCACCACAC 57.449 50.000 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.