Multiple sequence alignment - TraesCS3B01G058400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G058400 chr3B 100.000 2840 0 0 2595 5434 30408903 30411742 0.000000e+00 5245.0
1 TraesCS3B01G058400 chr3B 100.000 2257 0 0 1 2257 30406309 30408565 0.000000e+00 4169.0
2 TraesCS3B01G058400 chr3B 95.387 1886 79 6 3127 5009 30091189 30089309 0.000000e+00 2994.0
3 TraesCS3B01G058400 chr3B 94.685 1844 94 4 3127 4968 29592466 29590625 0.000000e+00 2859.0
4 TraesCS3B01G058400 chr3B 91.601 1643 91 7 638 2257 29594620 29593002 0.000000e+00 2226.0
5 TraesCS3B01G058400 chr3B 89.005 1628 126 26 2898 4507 29379793 29381385 0.000000e+00 1965.0
6 TraesCS3B01G058400 chr3B 89.763 1309 84 16 677 1958 30093339 30092054 0.000000e+00 1629.0
7 TraesCS3B01G058400 chr3B 89.432 880 66 13 905 1768 29640843 29641711 0.000000e+00 1085.0
8 TraesCS3B01G058400 chr3B 92.751 538 39 0 2595 3132 29592965 29592428 0.000000e+00 778.0
9 TraesCS3B01G058400 chr3B 83.715 829 82 31 4201 5009 29787730 29788525 0.000000e+00 734.0
10 TraesCS3B01G058400 chr3B 91.367 417 34 2 5020 5434 30089248 30088832 2.200000e-158 569.0
11 TraesCS3B01G058400 chr3B 88.960 471 36 4 2660 3127 30091613 30091156 7.900000e-158 568.0
12 TraesCS3B01G058400 chr3B 93.750 336 20 1 306 641 29595666 29595332 2.260000e-138 503.0
13 TraesCS3B01G058400 chr3B 93.155 336 22 1 306 641 30095729 30095395 4.890000e-135 492.0
14 TraesCS3B01G058400 chr3B 82.660 421 59 10 5020 5434 29590535 29590123 1.440000e-95 361.0
15 TraesCS3B01G058400 chr3B 86.620 284 35 3 3981 4262 29354645 29354363 1.470000e-80 311.0
16 TraesCS3B01G058400 chr3B 92.377 223 9 3 2035 2257 669905237 669905451 1.470000e-80 311.0
17 TraesCS3B01G058400 chr3B 92.857 196 14 0 568 763 29640649 29640844 8.910000e-73 285.0
18 TraesCS3B01G058400 chr3B 72.173 787 161 41 1063 1821 29528900 29528144 2.580000e-43 187.0
19 TraesCS3B01G058400 chr3B 93.694 111 7 0 306 416 30454409 30454299 3.370000e-37 167.0
20 TraesCS3B01G058400 chr3B 100.000 46 0 0 1 46 30454451 30454406 9.700000e-13 86.1
21 TraesCS3B01G058400 chr3B 93.478 46 3 0 1 46 29595708 29595663 9.770000e-08 69.4
22 TraesCS3B01G058400 chr3B 91.304 46 4 0 1 46 30095771 30095726 4.540000e-06 63.9
23 TraesCS3B01G058400 chr3D 94.854 1885 93 2 3127 5009 18659806 18661688 0.000000e+00 2940.0
24 TraesCS3B01G058400 chr3D 92.597 1567 87 8 3127 4675 18926846 18928401 0.000000e+00 2224.0
25 TraesCS3B01G058400 chr3D 92.737 1308 66 14 632 1912 18657742 18659047 0.000000e+00 1862.0
26 TraesCS3B01G058400 chr3D 92.634 1086 66 6 899 1976 18911024 18912103 0.000000e+00 1550.0
27 TraesCS3B01G058400 chr3D 90.909 539 47 2 2595 3132 18659307 18659844 0.000000e+00 723.0
28 TraesCS3B01G058400 chr3D 92.016 501 36 4 1475 1973 18739710 18740208 0.000000e+00 701.0
29 TraesCS3B01G058400 chr3D 91.342 462 36 4 356 816 18910556 18911014 3.570000e-176 628.0
30 TraesCS3B01G058400 chr3D 88.981 481 51 2 2654 3132 18740571 18741051 1.300000e-165 593.0
31 TraesCS3B01G058400 chr3D 92.328 378 27 1 2755 3132 18926509 18926884 2.230000e-148 536.0
32 TraesCS3B01G058400 chr3D 88.278 418 45 4 5020 5434 18661749 18662165 1.050000e-136 497.0
33 TraesCS3B01G058400 chr3D 92.617 298 22 0 356 653 18657430 18657727 3.890000e-116 429.0
34 TraesCS3B01G058400 chr3D 95.276 127 6 0 3127 3253 18741013 18741139 9.230000e-48 202.0
35 TraesCS3B01G058400 chr3D 90.647 139 10 2 1899 2034 18659140 18659278 1.200000e-41 182.0
36 TraesCS3B01G058400 chr3D 97.500 40 0 1 305 344 331016699 331016661 3.510000e-07 67.6
37 TraesCS3B01G058400 chr3A 94.796 1422 72 2 3127 4547 26195966 26197386 0.000000e+00 2215.0
38 TraesCS3B01G058400 chr3A 89.801 1657 111 7 356 1985 26193846 26195471 0.000000e+00 2071.0
39 TraesCS3B01G058400 chr3A 92.688 1395 80 10 3127 4507 26141756 26143142 0.000000e+00 1991.0
40 TraesCS3B01G058400 chr3A 89.083 458 44 2 2675 3132 26195553 26196004 1.020000e-156 564.0
41 TraesCS3B01G058400 chr3A 92.609 230 16 1 2898 3127 26141561 26141789 4.060000e-86 329.0
42 TraesCS3B01G058400 chr3A 80.000 235 36 4 1062 1286 26247052 26247285 4.360000e-36 163.0
43 TraesCS3B01G058400 chr6B 93.818 275 15 2 41 314 182268782 182268509 3.920000e-111 412.0
44 TraesCS3B01G058400 chr5B 94.636 261 14 0 44 304 474569926 474569666 6.550000e-109 405.0
45 TraesCS3B01G058400 chr7B 94.275 262 13 2 45 305 692674979 692674719 3.050000e-107 399.0
46 TraesCS3B01G058400 chr7B 92.086 278 20 2 41 317 287654140 287653864 1.840000e-104 390.0
47 TraesCS3B01G058400 chr7B 92.377 223 9 2 2035 2257 698133190 698132976 1.470000e-80 311.0
48 TraesCS3B01G058400 chr7B 91.928 223 10 2 2035 2257 742930906 742931120 6.840000e-79 305.0
49 TraesCS3B01G058400 chr7D 93.609 266 17 0 44 309 611484782 611485047 1.100000e-106 398.0
50 TraesCS3B01G058400 chr7D 92.364 275 21 0 31 305 186447301 186447575 5.100000e-105 392.0
51 TraesCS3B01G058400 chr2B 94.275 262 12 3 45 305 206682374 206682115 1.100000e-106 398.0
52 TraesCS3B01G058400 chr4A 93.015 272 17 2 36 305 654066880 654066609 3.940000e-106 396.0
53 TraesCS3B01G058400 chr1A 92.701 274 15 5 37 309 492022040 492022309 1.840000e-104 390.0
54 TraesCS3B01G058400 chr1A 100.000 37 0 0 305 341 257557174 257557138 9.770000e-08 69.4
55 TraesCS3B01G058400 chr1A 100.000 37 0 0 306 342 350014329 350014365 9.770000e-08 69.4
56 TraesCS3B01G058400 chrUn 92.825 223 9 1 2035 2257 246703575 246703360 3.160000e-82 316.0
57 TraesCS3B01G058400 chrUn 92.825 223 9 1 2035 2257 266183732 266183517 3.160000e-82 316.0
58 TraesCS3B01G058400 chrUn 80.723 166 32 0 1512 1677 282462319 282462154 4.420000e-26 130.0
59 TraesCS3B01G058400 chrUn 80.723 166 32 0 1512 1677 337593320 337593155 4.420000e-26 130.0
60 TraesCS3B01G058400 chr2D 92.377 223 9 2 2035 2257 18020268 18020054 1.470000e-80 311.0
61 TraesCS3B01G058400 chr2D 80.374 107 21 0 2598 2704 174392186 174392080 1.250000e-11 82.4
62 TraesCS3B01G058400 chr7A 91.928 223 10 2 2035 2257 200013553 200013339 6.840000e-79 305.0
63 TraesCS3B01G058400 chr6A 91.928 223 10 6 2035 2257 597222127 597222341 6.840000e-79 305.0
64 TraesCS3B01G058400 chr6A 95.652 46 1 1 5379 5424 71954909 71954865 7.550000e-09 73.1
65 TraesCS3B01G058400 chr6D 100.000 37 0 0 305 341 109893762 109893798 9.770000e-08 69.4
66 TraesCS3B01G058400 chr4D 100.000 37 0 0 305 341 54795969 54796005 9.770000e-08 69.4
67 TraesCS3B01G058400 chr4D 100.000 37 0 0 305 341 482703606 482703570 9.770000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G058400 chr3B 30406309 30411742 5433 False 4707.000000 5245 100.000000 1 5434 2 chr3B.!!$F5 5433
1 TraesCS3B01G058400 chr3B 29379793 29381385 1592 False 1965.000000 1965 89.005000 2898 4507 1 chr3B.!!$F1 1609
2 TraesCS3B01G058400 chr3B 29590123 29595708 5585 True 1132.733333 2859 91.487500 1 5434 6 chr3B.!!$R3 5433
3 TraesCS3B01G058400 chr3B 30088832 30095771 6939 True 1052.650000 2994 91.656000 1 5434 6 chr3B.!!$R4 5433
4 TraesCS3B01G058400 chr3B 29787730 29788525 795 False 734.000000 734 83.715000 4201 5009 1 chr3B.!!$F2 808
5 TraesCS3B01G058400 chr3B 29640649 29641711 1062 False 685.000000 1085 91.144500 568 1768 2 chr3B.!!$F4 1200
6 TraesCS3B01G058400 chr3D 18926509 18928401 1892 False 1380.000000 2224 92.462500 2755 4675 2 chr3D.!!$F4 1920
7 TraesCS3B01G058400 chr3D 18657430 18662165 4735 False 1105.500000 2940 91.673667 356 5434 6 chr3D.!!$F1 5078
8 TraesCS3B01G058400 chr3D 18910556 18912103 1547 False 1089.000000 1550 91.988000 356 1976 2 chr3D.!!$F3 1620
9 TraesCS3B01G058400 chr3D 18739710 18741139 1429 False 498.666667 701 92.091000 1475 3253 3 chr3D.!!$F2 1778
10 TraesCS3B01G058400 chr3A 26193846 26197386 3540 False 1616.666667 2215 91.226667 356 4547 3 chr3A.!!$F3 4191
11 TraesCS3B01G058400 chr3A 26141561 26143142 1581 False 1160.000000 1991 92.648500 2898 4507 2 chr3A.!!$F2 1609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.249489 GCCCGGTGCATGTAGACTAG 60.249 60.000 9.72 0.0 40.77 2.57 F
427 430 0.391130 TCCGTCCGCCTCAAGATTTG 60.391 55.000 0.00 0.0 0.00 2.32 F
1044 3165 0.400213 TCTTCATCGGGGTTTGCTGT 59.600 50.000 0.00 0.0 0.00 4.40 F
1521 3665 1.153127 GTGGGTGGTGTTTGTCCGA 60.153 57.895 0.00 0.0 0.00 4.55 F
2650 4964 0.816018 TGATGGCAAAACACGTCCGT 60.816 50.000 0.00 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1610 3754 1.954146 GCGTTCGTCTTGCCTGACA 60.954 57.895 6.93 0.00 36.82 3.58 R
2134 4448 0.907230 AAGCTTCCTCCCTTCGCTCT 60.907 55.000 0.00 0.00 0.00 4.09 R
2609 4923 0.611200 CACGGTCCTGTATTGGTCCA 59.389 55.000 0.00 0.00 35.48 4.02 R
2848 5174 0.801872 AATGCACGCGACATAAGCAA 59.198 45.000 15.93 0.00 38.85 3.91 R
4524 6927 0.710567 GACACGATGCAACGTCTGAG 59.289 55.000 19.84 10.81 44.76 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
45 46 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
46 47 2.584064 CAGCCCGGTGCATGTAGA 59.416 61.111 15.92 0.00 44.83 2.59
47 48 1.815421 CAGCCCGGTGCATGTAGAC 60.815 63.158 15.92 0.00 44.83 2.59
48 49 1.990060 AGCCCGGTGCATGTAGACT 60.990 57.895 15.92 0.00 44.83 3.24
49 50 0.686441 AGCCCGGTGCATGTAGACTA 60.686 55.000 15.92 0.00 44.83 2.59
50 51 0.249489 GCCCGGTGCATGTAGACTAG 60.249 60.000 9.72 0.00 40.77 2.57
51 52 0.249489 CCCGGTGCATGTAGACTAGC 60.249 60.000 0.00 0.00 0.00 3.42
52 53 0.249489 CCGGTGCATGTAGACTAGCC 60.249 60.000 0.00 0.00 0.00 3.93
53 54 0.459899 CGGTGCATGTAGACTAGCCA 59.540 55.000 0.00 0.00 0.00 4.75
54 55 1.802880 CGGTGCATGTAGACTAGCCAC 60.803 57.143 0.00 0.00 0.00 5.01
55 56 1.207089 GGTGCATGTAGACTAGCCACA 59.793 52.381 0.00 0.00 0.00 4.17
56 57 2.354704 GGTGCATGTAGACTAGCCACAA 60.355 50.000 0.00 0.00 0.00 3.33
57 58 3.535561 GTGCATGTAGACTAGCCACAAT 58.464 45.455 0.00 0.00 0.00 2.71
58 59 4.442893 GGTGCATGTAGACTAGCCACAATA 60.443 45.833 0.00 0.00 0.00 1.90
59 60 5.116180 GTGCATGTAGACTAGCCACAATAA 58.884 41.667 0.00 0.00 0.00 1.40
60 61 5.760253 GTGCATGTAGACTAGCCACAATAAT 59.240 40.000 0.00 0.00 0.00 1.28
61 62 5.759763 TGCATGTAGACTAGCCACAATAATG 59.240 40.000 0.00 0.00 0.00 1.90
62 63 5.991606 GCATGTAGACTAGCCACAATAATGA 59.008 40.000 0.00 0.00 0.00 2.57
63 64 6.146837 GCATGTAGACTAGCCACAATAATGAG 59.853 42.308 0.00 0.00 0.00 2.90
64 65 6.791867 TGTAGACTAGCCACAATAATGAGT 57.208 37.500 0.00 0.00 0.00 3.41
65 66 7.891498 TGTAGACTAGCCACAATAATGAGTA 57.109 36.000 0.00 0.00 0.00 2.59
66 67 8.301252 TGTAGACTAGCCACAATAATGAGTAA 57.699 34.615 0.00 0.00 0.00 2.24
67 68 8.195436 TGTAGACTAGCCACAATAATGAGTAAC 58.805 37.037 0.00 0.00 0.00 2.50
68 69 7.182817 AGACTAGCCACAATAATGAGTAACA 57.817 36.000 0.00 0.00 0.00 2.41
69 70 7.796054 AGACTAGCCACAATAATGAGTAACAT 58.204 34.615 0.00 0.00 41.45 2.71
70 71 8.924303 AGACTAGCCACAATAATGAGTAACATA 58.076 33.333 0.00 0.00 38.38 2.29
71 72 8.888579 ACTAGCCACAATAATGAGTAACATAC 57.111 34.615 0.00 0.00 38.38 2.39
72 73 8.705594 ACTAGCCACAATAATGAGTAACATACT 58.294 33.333 0.00 0.00 42.86 2.12
108 109 8.798402 AGACTATGTTACTATCTTCATAGTGGC 58.202 37.037 17.43 7.64 46.89 5.01
109 110 8.713708 ACTATGTTACTATCTTCATAGTGGCT 57.286 34.615 13.45 0.00 45.91 4.75
110 111 9.809395 ACTATGTTACTATCTTCATAGTGGCTA 57.191 33.333 13.45 0.00 45.91 3.93
112 113 8.713708 ATGTTACTATCTTCATAGTGGCTAGT 57.286 34.615 5.12 0.00 44.33 2.57
113 114 9.809395 ATGTTACTATCTTCATAGTGGCTAGTA 57.191 33.333 5.12 0.00 44.33 1.82
114 115 9.636789 TGTTACTATCTTCATAGTGGCTAGTAA 57.363 33.333 5.12 0.00 44.33 2.24
115 116 9.896263 GTTACTATCTTCATAGTGGCTAGTAAC 57.104 37.037 11.64 11.64 44.33 2.50
116 117 9.636789 TTACTATCTTCATAGTGGCTAGTAACA 57.363 33.333 5.12 0.00 44.33 2.41
117 118 8.713708 ACTATCTTCATAGTGGCTAGTAACAT 57.286 34.615 0.00 0.00 43.21 2.71
118 119 9.809395 ACTATCTTCATAGTGGCTAGTAACATA 57.191 33.333 0.00 0.00 43.21 2.29
121 122 8.534954 TCTTCATAGTGGCTAGTAACATAAGT 57.465 34.615 0.00 0.00 0.00 2.24
122 123 8.414003 TCTTCATAGTGGCTAGTAACATAAGTG 58.586 37.037 0.00 0.00 0.00 3.16
123 124 7.655521 TCATAGTGGCTAGTAACATAAGTGT 57.344 36.000 0.00 0.00 41.28 3.55
124 125 7.489160 TCATAGTGGCTAGTAACATAAGTGTG 58.511 38.462 0.00 0.00 38.92 3.82
125 126 5.086104 AGTGGCTAGTAACATAAGTGTGG 57.914 43.478 0.00 0.00 38.92 4.17
126 127 4.530946 AGTGGCTAGTAACATAAGTGTGGT 59.469 41.667 0.00 0.00 38.92 4.16
127 128 5.718130 AGTGGCTAGTAACATAAGTGTGGTA 59.282 40.000 0.00 0.00 38.92 3.25
128 129 6.211986 AGTGGCTAGTAACATAAGTGTGGTAA 59.788 38.462 0.00 0.00 38.92 2.85
129 130 6.312180 GTGGCTAGTAACATAAGTGTGGTAAC 59.688 42.308 0.00 0.00 38.92 2.50
144 145 4.870123 TGGTAACATGCAAAGCTTCATT 57.130 36.364 0.00 0.00 46.17 2.57
145 146 5.212532 TGGTAACATGCAAAGCTTCATTT 57.787 34.783 0.00 1.04 46.17 2.32
146 147 6.338214 TGGTAACATGCAAAGCTTCATTTA 57.662 33.333 0.00 0.18 46.17 1.40
147 148 6.934056 TGGTAACATGCAAAGCTTCATTTAT 58.066 32.000 0.00 0.00 46.17 1.40
148 149 7.385267 TGGTAACATGCAAAGCTTCATTTATT 58.615 30.769 0.00 0.00 46.17 1.40
149 150 8.526978 TGGTAACATGCAAAGCTTCATTTATTA 58.473 29.630 0.00 0.00 46.17 0.98
150 151 9.023967 GGTAACATGCAAAGCTTCATTTATTAG 57.976 33.333 0.00 0.00 0.00 1.73
151 152 9.023967 GTAACATGCAAAGCTTCATTTATTAGG 57.976 33.333 0.00 0.00 0.00 2.69
152 153 7.174107 ACATGCAAAGCTTCATTTATTAGGT 57.826 32.000 0.00 0.00 0.00 3.08
153 154 7.614494 ACATGCAAAGCTTCATTTATTAGGTT 58.386 30.769 0.00 0.00 0.00 3.50
154 155 8.748412 ACATGCAAAGCTTCATTTATTAGGTTA 58.252 29.630 0.00 0.00 0.00 2.85
155 156 9.754382 CATGCAAAGCTTCATTTATTAGGTTAT 57.246 29.630 0.00 0.00 0.00 1.89
173 174 9.725019 TTAGGTTATAGACTCATATTGCATTGG 57.275 33.333 0.00 0.00 0.00 3.16
174 175 7.170965 AGGTTATAGACTCATATTGCATTGGG 58.829 38.462 0.00 0.00 0.00 4.12
175 176 7.017551 AGGTTATAGACTCATATTGCATTGGGA 59.982 37.037 0.00 0.00 0.00 4.37
176 177 7.119846 GGTTATAGACTCATATTGCATTGGGAC 59.880 40.741 0.00 0.00 0.00 4.46
177 178 4.508551 AGACTCATATTGCATTGGGACA 57.491 40.909 0.00 0.00 0.00 4.02
178 179 5.057843 AGACTCATATTGCATTGGGACAT 57.942 39.130 0.00 0.00 39.30 3.06
179 180 4.825634 AGACTCATATTGCATTGGGACATG 59.174 41.667 0.00 0.00 39.30 3.21
180 181 4.539726 ACTCATATTGCATTGGGACATGT 58.460 39.130 0.00 0.00 39.30 3.21
181 182 4.340097 ACTCATATTGCATTGGGACATGTG 59.660 41.667 1.15 0.00 39.30 3.21
182 183 4.534797 TCATATTGCATTGGGACATGTGA 58.465 39.130 1.15 0.00 39.30 3.58
183 184 5.141910 TCATATTGCATTGGGACATGTGAT 58.858 37.500 1.15 0.00 39.30 3.06
184 185 3.812156 ATTGCATTGGGACATGTGATG 57.188 42.857 1.15 3.48 39.30 3.07
186 187 2.527497 TGCATTGGGACATGTGATGTT 58.473 42.857 1.15 0.00 45.03 2.71
187 188 2.231721 TGCATTGGGACATGTGATGTTG 59.768 45.455 1.15 0.00 45.03 3.33
188 189 2.883574 CATTGGGACATGTGATGTTGC 58.116 47.619 1.15 0.00 45.03 4.17
189 190 1.992538 TTGGGACATGTGATGTTGCA 58.007 45.000 1.15 0.00 45.03 4.08
190 191 1.536940 TGGGACATGTGATGTTGCAG 58.463 50.000 1.15 0.00 45.03 4.41
191 192 1.202915 TGGGACATGTGATGTTGCAGT 60.203 47.619 1.15 0.00 45.03 4.40
192 193 2.039613 TGGGACATGTGATGTTGCAGTA 59.960 45.455 1.15 0.00 45.03 2.74
193 194 3.081061 GGGACATGTGATGTTGCAGTAA 58.919 45.455 1.15 0.00 45.03 2.24
194 195 3.119849 GGGACATGTGATGTTGCAGTAAC 60.120 47.826 1.15 0.00 45.03 2.50
195 196 3.753272 GGACATGTGATGTTGCAGTAACT 59.247 43.478 1.15 0.00 45.03 2.24
196 197 4.935205 GGACATGTGATGTTGCAGTAACTA 59.065 41.667 1.15 0.00 45.03 2.24
197 198 5.063944 GGACATGTGATGTTGCAGTAACTAG 59.936 44.000 1.15 0.00 45.03 2.57
198 199 4.393062 ACATGTGATGTTGCAGTAACTAGC 59.607 41.667 0.00 0.00 41.63 3.42
199 200 4.271696 TGTGATGTTGCAGTAACTAGCT 57.728 40.909 2.84 0.00 40.05 3.32
200 201 5.400066 TGTGATGTTGCAGTAACTAGCTA 57.600 39.130 2.84 0.00 40.05 3.32
201 202 5.789521 TGTGATGTTGCAGTAACTAGCTAA 58.210 37.500 2.84 0.00 40.05 3.09
202 203 5.869344 TGTGATGTTGCAGTAACTAGCTAAG 59.131 40.000 2.84 0.00 40.05 2.18
203 204 5.869888 GTGATGTTGCAGTAACTAGCTAAGT 59.130 40.000 2.84 0.00 41.49 2.24
205 206 7.544566 GTGATGTTGCAGTAACTAGCTAAGTTA 59.455 37.037 2.84 10.09 46.85 2.24
217 218 8.536340 AACTAGCTAAGTTACTATAACTGCCT 57.464 34.615 2.10 2.80 46.85 4.75
218 219 8.168790 ACTAGCTAAGTTACTATAACTGCCTC 57.831 38.462 2.10 0.00 33.35 4.70
219 220 8.000127 ACTAGCTAAGTTACTATAACTGCCTCT 59.000 37.037 2.10 1.73 33.35 3.69
220 221 7.279750 AGCTAAGTTACTATAACTGCCTCTC 57.720 40.000 2.10 0.00 0.00 3.20
221 222 7.064229 AGCTAAGTTACTATAACTGCCTCTCT 58.936 38.462 2.10 0.00 0.00 3.10
222 223 7.229907 AGCTAAGTTACTATAACTGCCTCTCTC 59.770 40.741 2.10 0.00 0.00 3.20
223 224 6.718522 AAGTTACTATAACTGCCTCTCTCC 57.281 41.667 2.10 0.00 0.00 3.71
224 225 6.020881 AGTTACTATAACTGCCTCTCTCCT 57.979 41.667 0.46 0.00 0.00 3.69
225 226 6.066032 AGTTACTATAACTGCCTCTCTCCTC 58.934 44.000 0.46 0.00 0.00 3.71
226 227 4.528076 ACTATAACTGCCTCTCTCCTCA 57.472 45.455 0.00 0.00 0.00 3.86
227 228 5.073437 ACTATAACTGCCTCTCTCCTCAT 57.927 43.478 0.00 0.00 0.00 2.90
228 229 5.463154 ACTATAACTGCCTCTCTCCTCATT 58.537 41.667 0.00 0.00 0.00 2.57
229 230 6.615617 ACTATAACTGCCTCTCTCCTCATTA 58.384 40.000 0.00 0.00 0.00 1.90
230 231 7.069986 ACTATAACTGCCTCTCTCCTCATTAA 58.930 38.462 0.00 0.00 0.00 1.40
231 232 4.479786 AACTGCCTCTCTCCTCATTAAC 57.520 45.455 0.00 0.00 0.00 2.01
232 233 3.718723 ACTGCCTCTCTCCTCATTAACT 58.281 45.455 0.00 0.00 0.00 2.24
233 234 3.704061 ACTGCCTCTCTCCTCATTAACTC 59.296 47.826 0.00 0.00 0.00 3.01
234 235 3.703556 CTGCCTCTCTCCTCATTAACTCA 59.296 47.826 0.00 0.00 0.00 3.41
235 236 4.293494 TGCCTCTCTCCTCATTAACTCAT 58.707 43.478 0.00 0.00 0.00 2.90
236 237 4.718774 TGCCTCTCTCCTCATTAACTCATT 59.281 41.667 0.00 0.00 0.00 2.57
237 238 5.055812 GCCTCTCTCCTCATTAACTCATTG 58.944 45.833 0.00 0.00 0.00 2.82
238 239 5.055812 CCTCTCTCCTCATTAACTCATTGC 58.944 45.833 0.00 0.00 0.00 3.56
239 240 5.028549 TCTCTCCTCATTAACTCATTGCC 57.971 43.478 0.00 0.00 0.00 4.52
240 241 4.471025 TCTCTCCTCATTAACTCATTGCCA 59.529 41.667 0.00 0.00 0.00 4.92
241 242 4.517285 TCTCCTCATTAACTCATTGCCAC 58.483 43.478 0.00 0.00 0.00 5.01
242 243 4.019411 TCTCCTCATTAACTCATTGCCACA 60.019 41.667 0.00 0.00 0.00 4.17
243 244 4.858850 TCCTCATTAACTCATTGCCACAT 58.141 39.130 0.00 0.00 0.00 3.21
244 245 6.000246 TCCTCATTAACTCATTGCCACATA 58.000 37.500 0.00 0.00 0.00 2.29
245 246 6.422333 TCCTCATTAACTCATTGCCACATAA 58.578 36.000 0.00 0.00 0.00 1.90
246 247 6.543465 TCCTCATTAACTCATTGCCACATAAG 59.457 38.462 0.00 0.00 0.00 1.73
247 248 6.135290 TCATTAACTCATTGCCACATAAGC 57.865 37.500 0.00 0.00 0.00 3.09
248 249 5.651576 TCATTAACTCATTGCCACATAAGCA 59.348 36.000 0.00 0.00 38.81 3.91
267 268 3.615849 CAAAGTTGCTGAGTTGGACTC 57.384 47.619 1.21 1.21 45.26 3.36
278 279 2.924290 GAGTTGGACTCGATGTTACTGC 59.076 50.000 0.00 0.00 35.28 4.40
279 280 2.563179 AGTTGGACTCGATGTTACTGCT 59.437 45.455 0.00 0.00 0.00 4.24
280 281 2.654749 TGGACTCGATGTTACTGCTG 57.345 50.000 0.00 0.00 0.00 4.41
281 282 2.167662 TGGACTCGATGTTACTGCTGA 58.832 47.619 0.00 0.00 0.00 4.26
282 283 2.560981 TGGACTCGATGTTACTGCTGAA 59.439 45.455 0.00 0.00 0.00 3.02
283 284 3.182967 GGACTCGATGTTACTGCTGAAG 58.817 50.000 0.00 0.00 0.00 3.02
284 285 3.367498 GGACTCGATGTTACTGCTGAAGT 60.367 47.826 0.00 0.00 43.40 3.01
285 286 4.238514 GACTCGATGTTACTGCTGAAGTT 58.761 43.478 0.00 0.00 40.56 2.66
286 287 5.386958 ACTCGATGTTACTGCTGAAGTTA 57.613 39.130 0.00 0.00 40.56 2.24
287 288 5.162075 ACTCGATGTTACTGCTGAAGTTAC 58.838 41.667 0.00 0.00 40.56 2.50
288 289 5.047943 ACTCGATGTTACTGCTGAAGTTACT 60.048 40.000 6.50 0.00 38.87 2.24
289 290 5.399858 TCGATGTTACTGCTGAAGTTACTC 58.600 41.667 6.50 1.79 38.87 2.59
290 291 5.183331 TCGATGTTACTGCTGAAGTTACTCT 59.817 40.000 6.50 0.00 38.87 3.24
291 292 5.513495 CGATGTTACTGCTGAAGTTACTCTC 59.487 44.000 6.50 3.23 38.87 3.20
292 293 5.784578 TGTTACTGCTGAAGTTACTCTCA 57.215 39.130 6.50 0.00 38.87 3.27
293 294 5.529791 TGTTACTGCTGAAGTTACTCTCAC 58.470 41.667 6.50 0.00 38.87 3.51
294 295 5.302059 TGTTACTGCTGAAGTTACTCTCACT 59.698 40.000 6.50 0.00 38.87 3.41
295 296 4.250116 ACTGCTGAAGTTACTCTCACTG 57.750 45.455 0.00 0.00 34.57 3.66
296 297 3.639094 ACTGCTGAAGTTACTCTCACTGT 59.361 43.478 0.00 0.00 34.57 3.55
297 298 3.982475 TGCTGAAGTTACTCTCACTGTG 58.018 45.455 0.17 0.17 0.00 3.66
298 299 3.243873 TGCTGAAGTTACTCTCACTGTGG 60.244 47.826 8.11 0.00 0.00 4.17
299 300 3.321497 CTGAAGTTACTCTCACTGTGGC 58.679 50.000 8.11 0.00 0.00 5.01
300 301 2.965831 TGAAGTTACTCTCACTGTGGCT 59.034 45.455 8.11 0.00 0.00 4.75
301 302 4.149598 TGAAGTTACTCTCACTGTGGCTA 58.850 43.478 8.11 0.00 0.00 3.93
302 303 4.218635 TGAAGTTACTCTCACTGTGGCTAG 59.781 45.833 8.11 5.78 0.00 3.42
303 304 3.768878 AGTTACTCTCACTGTGGCTAGT 58.231 45.455 8.11 11.01 0.00 2.57
304 305 3.759618 AGTTACTCTCACTGTGGCTAGTC 59.240 47.826 8.11 0.00 0.00 2.59
368 369 3.631686 TGATTATTGGCATGCAGGTGTAC 59.368 43.478 21.36 6.35 0.00 2.90
398 399 6.999950 TGCTTAGATTAATTAGATGGCCGTA 58.000 36.000 0.00 0.00 0.00 4.02
403 404 9.599866 TTAGATTAATTAGATGGCCGTATGATG 57.400 33.333 1.24 0.00 0.00 3.07
426 429 0.391263 GTCCGTCCGCCTCAAGATTT 60.391 55.000 0.00 0.00 0.00 2.17
427 430 0.391130 TCCGTCCGCCTCAAGATTTG 60.391 55.000 0.00 0.00 0.00 2.32
464 467 7.704899 GTGAAACTTTGTGTTATGCTTACCTTT 59.295 33.333 0.00 0.00 38.03 3.11
475 478 3.064207 TGCTTACCTTTGACTGCGTAAG 58.936 45.455 0.00 0.00 40.30 2.34
571 574 8.057536 TGTGTGTAGTTGGTTTTGTTAAGATT 57.942 30.769 0.00 0.00 0.00 2.40
583 586 8.831550 GGTTTTGTTAAGATTATTTGGTTGCAA 58.168 29.630 0.00 0.00 0.00 4.08
715 2809 6.039717 AGTGCAAATAGTGTGTTGTTCAATCT 59.960 34.615 0.00 0.00 0.00 2.40
733 2827 4.870123 ATCTGCATCACCTCTCATCTAC 57.130 45.455 0.00 0.00 0.00 2.59
781 2875 0.999406 CTAGGACAACAACCGCGATG 59.001 55.000 8.23 9.26 0.00 3.84
803 2897 6.358974 TGTCATCATGTCTGAAAAGTCCTA 57.641 37.500 0.00 0.00 34.37 2.94
812 2906 4.282703 GTCTGAAAAGTCCTACACCCACTA 59.717 45.833 0.00 0.00 0.00 2.74
816 2910 5.546499 TGAAAAGTCCTACACCCACTAGATT 59.454 40.000 0.00 0.00 0.00 2.40
842 2936 2.477863 GCCACTCATAATTGCGTTCCAC 60.478 50.000 0.00 0.00 0.00 4.02
848 2942 4.496360 TCATAATTGCGTTCCACGTCTTA 58.504 39.130 0.00 0.00 44.73 2.10
858 2952 1.968493 TCCACGTCTTACCTTTGCTCT 59.032 47.619 0.00 0.00 0.00 4.09
860 2954 1.461127 CACGTCTTACCTTTGCTCTGC 59.539 52.381 0.00 0.00 0.00 4.26
872 2966 5.591877 ACCTTTGCTCTGCCAATTAAGATAG 59.408 40.000 0.00 0.00 0.00 2.08
993 3114 4.676924 GCTGACACAAATTACAAGTCTTGC 59.323 41.667 12.66 0.00 0.00 4.01
996 3117 6.207928 TGACACAAATTACAAGTCTTGCATG 58.792 36.000 12.66 7.19 0.00 4.06
1041 3162 2.396590 TAGTCTTCATCGGGGTTTGC 57.603 50.000 0.00 0.00 0.00 3.68
1044 3165 0.400213 TCTTCATCGGGGTTTGCTGT 59.600 50.000 0.00 0.00 0.00 4.40
1120 3241 3.215568 CCAACAGGTGCGGCAACA 61.216 61.111 21.65 0.00 0.00 3.33
1224 3345 2.048444 ATAACAGCACTGCATCCCTG 57.952 50.000 3.30 6.20 0.00 4.45
1276 3405 7.361201 GCTTTGCAATCAACAGTATCTCTTACA 60.361 37.037 0.00 0.00 30.41 2.41
1495 3639 1.510480 GCAGACAAGTGTGAGGTGCC 61.510 60.000 1.10 0.00 0.00 5.01
1521 3665 1.153127 GTGGGTGGTGTTTGTCCGA 60.153 57.895 0.00 0.00 0.00 4.55
1812 3958 4.881850 CCCTACTCGAACCAAGCAAATTAT 59.118 41.667 0.00 0.00 0.00 1.28
1870 4016 2.890808 TTAGGCGTGGAAGCTCTATG 57.109 50.000 0.00 0.00 37.29 2.23
1897 4151 5.653769 TCAATTGAGATCCCCAATTTGAGAC 59.346 40.000 16.53 0.00 40.91 3.36
1955 4209 5.008019 GCTTTGTGGAATGATATGATGACGT 59.992 40.000 0.00 0.00 0.00 4.34
2042 4356 1.430992 GTAGGGCAGGGGCAATACTA 58.569 55.000 0.00 0.00 43.71 1.82
2079 4393 1.253100 AAATGCATTTCGACCCCGTT 58.747 45.000 18.99 0.00 37.05 4.44
2085 4399 2.933928 GCATTTCGACCCCGTTCTAGTT 60.934 50.000 0.00 0.00 37.05 2.24
2110 4424 2.671619 ATTTCGTGGCACCGGGTG 60.672 61.111 22.87 22.87 36.51 4.61
2134 4448 2.092429 GCTGAACCATCTACAATGGGGA 60.092 50.000 8.80 0.00 43.32 4.81
2139 4453 1.270518 CCATCTACAATGGGGAGAGCG 60.271 57.143 0.00 0.00 35.58 5.03
2149 4463 1.686110 GGGAGAGCGAAGGGAGGAA 60.686 63.158 0.00 0.00 0.00 3.36
2174 4488 6.019152 GCTTAGATAAGAGAATACGCTCTCG 58.981 44.000 3.77 0.00 44.18 4.04
2209 4523 7.514784 TTTTTAAAAAGCTCTACCAGGTACC 57.485 36.000 9.31 2.73 30.39 3.34
2210 4524 5.829062 TTAAAAAGCTCTACCAGGTACCA 57.171 39.130 15.94 0.00 30.39 3.25
2211 4525 4.717279 AAAAAGCTCTACCAGGTACCAA 57.283 40.909 15.94 0.00 30.39 3.67
2222 4536 3.118149 ACCAGGTACCAACGAGAAAAAGT 60.118 43.478 15.94 0.00 0.00 2.66
2230 4544 3.506810 CAACGAGAAAAAGTGTTTGGCA 58.493 40.909 0.00 0.00 0.00 4.92
2650 4964 0.816018 TGATGGCAAAACACGTCCGT 60.816 50.000 0.00 0.00 0.00 4.69
2665 4988 2.260434 CGTACCACACGGTCTGGG 59.740 66.667 7.37 0.00 44.71 4.45
2704 5027 2.819595 CCCGTGTTGGAGATGCCG 60.820 66.667 0.00 0.00 42.00 5.69
2748 5073 5.151297 TGTTCAGCTGAGATGACATGTTA 57.849 39.130 17.43 0.00 0.00 2.41
2769 5094 4.871993 AAGAGATGCTGCTATTTTGACG 57.128 40.909 0.00 0.00 0.00 4.35
2799 5124 6.647895 TGACATCTTAGAAACTACCGGTTTTC 59.352 38.462 15.04 18.10 46.77 2.29
2802 5127 7.664318 ACATCTTAGAAACTACCGGTTTTCATT 59.336 33.333 26.01 13.80 46.77 2.57
2805 5130 7.499895 TCTTAGAAACTACCGGTTTTCATTTGT 59.500 33.333 26.01 15.14 46.77 2.83
2811 5136 4.664150 ACCGGTTTTCATTTGTTGTCAT 57.336 36.364 0.00 0.00 0.00 3.06
2828 5153 5.011090 TGTCATTCTACTGATCTTTCCCG 57.989 43.478 0.00 0.00 0.00 5.14
2841 5166 5.759273 TGATCTTTCCCGTTCGAGTTAAAAA 59.241 36.000 0.00 0.00 0.00 1.94
3041 5370 3.442625 TCATGGCTTCTGCTCAGAAAATG 59.557 43.478 12.72 14.66 45.75 2.32
3047 5376 4.663166 CTTCTGCTCAGAAAATGCATGAG 58.337 43.478 12.72 4.75 45.75 2.90
3079 5419 6.265196 TCACAAACTTCCATACTTTGATGCTT 59.735 34.615 0.00 0.00 0.00 3.91
3320 5699 4.161001 TCTCTGTCTGCTGCAATCATCTTA 59.839 41.667 3.02 0.00 0.00 2.10
3366 5745 3.853671 GCACCGACATAAGCAAAAGATTG 59.146 43.478 0.00 0.00 39.65 2.67
3470 5849 6.349115 CGAAAAGGTACAAGTACTCAGAGCTA 60.349 42.308 9.94 0.00 36.36 3.32
3543 5922 3.642848 CACGGTATTTAGGGGTAGCCTAA 59.357 47.826 11.48 4.98 0.00 2.69
3551 5930 2.859951 AGGGGTAGCCTAAAAGATGGT 58.140 47.619 11.48 0.00 0.00 3.55
3959 6338 2.737830 GCCGGTAGCATCCTCTCC 59.262 66.667 1.90 0.00 42.97 3.71
4647 7053 4.454161 GGTTGGGTAATTCATTTGTTTGGC 59.546 41.667 0.00 0.00 0.00 4.52
4708 7116 2.840296 AAGCGTCGTAGTACCTAAGC 57.160 50.000 0.00 0.00 0.00 3.09
4732 7140 2.917205 AGACAAGTAGTTAGGGGCCTT 58.083 47.619 0.84 0.00 0.00 4.35
4777 7185 3.704566 AGCATCTATTCTAACCACGACCA 59.295 43.478 0.00 0.00 0.00 4.02
4821 7229 2.290641 ACCTGAATGCTTCGTTGTGAAC 59.709 45.455 0.00 0.00 31.87 3.18
4867 7275 5.279506 GCCCAGATCGAAGTATCTTATCCAA 60.280 44.000 0.00 0.00 33.87 3.53
4871 7279 8.310382 CCAGATCGAAGTATCTTATCCAAGAAT 58.690 37.037 0.00 0.00 43.89 2.40
4872 7280 9.138062 CAGATCGAAGTATCTTATCCAAGAATG 57.862 37.037 0.00 0.00 43.89 2.67
4961 7376 4.273318 AGAGGCCAAATCAACCATAGAAC 58.727 43.478 5.01 0.00 0.00 3.01
4964 7379 3.513515 GGCCAAATCAACCATAGAACCAA 59.486 43.478 0.00 0.00 0.00 3.67
4985 7400 0.166814 AGCGAGCGCACTGAATTTTC 59.833 50.000 17.68 0.00 44.88 2.29
5011 7426 3.365265 GCTCTTGGCAACCACGGG 61.365 66.667 0.00 0.00 41.35 5.28
5014 7429 0.609131 CTCTTGGCAACCACGGGATT 60.609 55.000 0.00 0.00 30.78 3.01
5015 7430 0.178975 TCTTGGCAACCACGGGATTT 60.179 50.000 0.00 0.00 30.78 2.17
5016 7431 0.678950 CTTGGCAACCACGGGATTTT 59.321 50.000 0.00 0.00 30.78 1.82
5017 7432 0.676736 TTGGCAACCACGGGATTTTC 59.323 50.000 0.00 0.00 30.78 2.29
5018 7433 0.468214 TGGCAACCACGGGATTTTCA 60.468 50.000 0.00 0.00 0.00 2.69
5077 7542 1.254026 TACTCTCCCTCAACACCACG 58.746 55.000 0.00 0.00 0.00 4.94
5128 7594 2.124736 GAGCCATGGCCGTAGCAA 60.125 61.111 33.14 0.00 42.56 3.91
5154 7620 3.432051 GATCACGTGGCGGGAGAGG 62.432 68.421 17.00 0.00 44.40 3.69
5160 7626 2.119611 TGGCGGGAGAGGTGAGAA 59.880 61.111 0.00 0.00 0.00 2.87
5197 7663 0.534427 TCACGACGATAGCTCCGGAT 60.534 55.000 3.57 0.00 42.67 4.18
5241 7707 2.494918 GTAGCACGGCGAGATGGT 59.505 61.111 16.62 10.20 0.00 3.55
5349 7819 0.606673 GTGCTCTCGGCCTTTTTCCT 60.607 55.000 0.00 0.00 40.92 3.36
5361 7832 3.678529 GCCTTTTTCCTGTTCACTGCAAA 60.679 43.478 0.00 0.00 0.00 3.68
5376 7847 7.897575 TCACTGCAAACAAACAAAAATACTT 57.102 28.000 0.00 0.00 0.00 2.24
5396 7867 5.201243 ACTTCTACCAGAAAAGGCTTTTGT 58.799 37.500 28.54 22.16 33.19 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.249489 GGCTAGTCTACATGCACCGG 60.249 60.000 0.00 0.00 0.00 5.28
35 36 1.207089 TGTGGCTAGTCTACATGCACC 59.793 52.381 0.00 0.00 30.75 5.01
42 43 8.195436 TGTTACTCATTATTGTGGCTAGTCTAC 58.805 37.037 0.00 0.00 0.00 2.59
43 44 8.301252 TGTTACTCATTATTGTGGCTAGTCTA 57.699 34.615 0.00 0.00 0.00 2.59
44 45 7.182817 TGTTACTCATTATTGTGGCTAGTCT 57.817 36.000 0.00 0.00 0.00 3.24
45 46 8.979574 GTATGTTACTCATTATTGTGGCTAGTC 58.020 37.037 0.00 0.00 37.91 2.59
46 47 8.705594 AGTATGTTACTCATTATTGTGGCTAGT 58.294 33.333 0.00 0.00 37.91 2.57
82 83 8.798402 GCCACTATGAAGATAGTAACATAGTCT 58.202 37.037 13.37 0.00 46.61 3.24
83 84 8.798402 AGCCACTATGAAGATAGTAACATAGTC 58.202 37.037 13.37 6.35 46.61 2.59
86 87 9.809395 ACTAGCCACTATGAAGATAGTAACATA 57.191 33.333 0.00 0.00 42.55 2.29
87 88 8.713708 ACTAGCCACTATGAAGATAGTAACAT 57.286 34.615 0.00 0.00 42.55 2.71
88 89 9.636789 TTACTAGCCACTATGAAGATAGTAACA 57.363 33.333 3.69 0.00 42.55 2.41
89 90 9.896263 GTTACTAGCCACTATGAAGATAGTAAC 57.104 37.037 16.85 16.85 42.55 2.50
90 91 9.636789 TGTTACTAGCCACTATGAAGATAGTAA 57.363 33.333 3.69 3.69 42.55 2.24
91 92 9.809395 ATGTTACTAGCCACTATGAAGATAGTA 57.191 33.333 0.00 0.00 42.55 1.82
92 93 8.713708 ATGTTACTAGCCACTATGAAGATAGT 57.286 34.615 0.00 0.00 44.86 2.12
95 96 9.148879 ACTTATGTTACTAGCCACTATGAAGAT 57.851 33.333 0.00 0.00 0.00 2.40
96 97 8.414003 CACTTATGTTACTAGCCACTATGAAGA 58.586 37.037 0.00 0.00 0.00 2.87
97 98 8.198109 ACACTTATGTTACTAGCCACTATGAAG 58.802 37.037 0.00 0.00 34.46 3.02
98 99 7.979537 CACACTTATGTTACTAGCCACTATGAA 59.020 37.037 0.00 0.00 36.72 2.57
99 100 7.417456 CCACACTTATGTTACTAGCCACTATGA 60.417 40.741 0.00 0.00 36.72 2.15
100 101 6.701841 CCACACTTATGTTACTAGCCACTATG 59.298 42.308 0.00 0.00 36.72 2.23
101 102 6.383147 ACCACACTTATGTTACTAGCCACTAT 59.617 38.462 0.00 0.00 36.72 2.12
102 103 5.718130 ACCACACTTATGTTACTAGCCACTA 59.282 40.000 0.00 0.00 36.72 2.74
103 104 4.530946 ACCACACTTATGTTACTAGCCACT 59.469 41.667 0.00 0.00 36.72 4.00
104 105 4.828829 ACCACACTTATGTTACTAGCCAC 58.171 43.478 0.00 0.00 36.72 5.01
105 106 6.014413 TGTTACCACACTTATGTTACTAGCCA 60.014 38.462 0.00 0.00 36.72 4.75
106 107 6.400568 TGTTACCACACTTATGTTACTAGCC 58.599 40.000 0.00 0.00 36.72 3.93
107 108 7.465513 GCATGTTACCACACTTATGTTACTAGC 60.466 40.741 0.00 0.00 36.72 3.42
108 109 7.547722 TGCATGTTACCACACTTATGTTACTAG 59.452 37.037 0.00 0.00 36.72 2.57
109 110 7.387643 TGCATGTTACCACACTTATGTTACTA 58.612 34.615 0.00 0.00 36.72 1.82
110 111 6.234920 TGCATGTTACCACACTTATGTTACT 58.765 36.000 0.00 0.00 36.72 2.24
111 112 6.489127 TGCATGTTACCACACTTATGTTAC 57.511 37.500 0.00 0.00 36.72 2.50
112 113 7.511959 TTTGCATGTTACCACACTTATGTTA 57.488 32.000 0.00 0.00 36.72 2.41
113 114 6.398234 TTTGCATGTTACCACACTTATGTT 57.602 33.333 0.00 0.00 36.72 2.71
114 115 5.564651 GCTTTGCATGTTACCACACTTATGT 60.565 40.000 0.00 0.00 40.80 2.29
115 116 4.858692 GCTTTGCATGTTACCACACTTATG 59.141 41.667 0.00 0.00 35.03 1.90
116 117 4.766891 AGCTTTGCATGTTACCACACTTAT 59.233 37.500 0.00 0.00 35.03 1.73
117 118 4.141287 AGCTTTGCATGTTACCACACTTA 58.859 39.130 0.00 0.00 35.03 2.24
118 119 2.958355 AGCTTTGCATGTTACCACACTT 59.042 40.909 0.00 0.00 35.03 3.16
119 120 2.586425 AGCTTTGCATGTTACCACACT 58.414 42.857 0.00 0.00 35.03 3.55
120 121 3.243367 TGAAGCTTTGCATGTTACCACAC 60.243 43.478 0.00 0.00 35.03 3.82
121 122 2.954989 TGAAGCTTTGCATGTTACCACA 59.045 40.909 0.00 0.00 37.31 4.17
122 123 3.641437 TGAAGCTTTGCATGTTACCAC 57.359 42.857 0.00 0.00 0.00 4.16
123 124 4.870123 AATGAAGCTTTGCATGTTACCA 57.130 36.364 0.00 0.00 0.00 3.25
124 125 7.832503 AATAAATGAAGCTTTGCATGTTACC 57.167 32.000 0.00 0.00 0.00 2.85
125 126 9.023967 CCTAATAAATGAAGCTTTGCATGTTAC 57.976 33.333 0.00 0.00 0.00 2.50
126 127 8.748412 ACCTAATAAATGAAGCTTTGCATGTTA 58.252 29.630 0.00 3.50 0.00 2.41
127 128 7.614494 ACCTAATAAATGAAGCTTTGCATGTT 58.386 30.769 0.00 1.51 0.00 2.71
128 129 7.174107 ACCTAATAAATGAAGCTTTGCATGT 57.826 32.000 0.00 0.00 0.00 3.21
129 130 9.754382 ATAACCTAATAAATGAAGCTTTGCATG 57.246 29.630 0.00 0.00 0.00 4.06
147 148 9.725019 CCAATGCAATATGAGTCTATAACCTAA 57.275 33.333 0.00 0.00 0.00 2.69
148 149 8.321353 CCCAATGCAATATGAGTCTATAACCTA 58.679 37.037 0.00 0.00 0.00 3.08
149 150 7.017551 TCCCAATGCAATATGAGTCTATAACCT 59.982 37.037 0.00 0.00 0.00 3.50
150 151 7.119846 GTCCCAATGCAATATGAGTCTATAACC 59.880 40.741 0.00 0.00 0.00 2.85
151 152 7.661437 TGTCCCAATGCAATATGAGTCTATAAC 59.339 37.037 0.00 0.00 0.00 1.89
152 153 7.744733 TGTCCCAATGCAATATGAGTCTATAA 58.255 34.615 0.00 0.00 0.00 0.98
153 154 7.315066 TGTCCCAATGCAATATGAGTCTATA 57.685 36.000 0.00 0.00 0.00 1.31
154 155 6.191657 TGTCCCAATGCAATATGAGTCTAT 57.808 37.500 0.00 0.00 0.00 1.98
155 156 5.628797 TGTCCCAATGCAATATGAGTCTA 57.371 39.130 0.00 0.00 0.00 2.59
156 157 4.508551 TGTCCCAATGCAATATGAGTCT 57.491 40.909 0.00 0.00 0.00 3.24
157 158 4.581824 ACATGTCCCAATGCAATATGAGTC 59.418 41.667 0.00 0.00 0.00 3.36
158 159 4.340097 CACATGTCCCAATGCAATATGAGT 59.660 41.667 0.00 0.00 0.00 3.41
159 160 4.581409 TCACATGTCCCAATGCAATATGAG 59.419 41.667 0.00 0.00 0.00 2.90
160 161 4.534797 TCACATGTCCCAATGCAATATGA 58.465 39.130 0.00 0.00 0.00 2.15
161 162 4.922471 TCACATGTCCCAATGCAATATG 57.078 40.909 0.00 0.00 0.00 1.78
162 163 4.897076 ACATCACATGTCCCAATGCAATAT 59.103 37.500 0.00 0.00 39.92 1.28
163 164 4.279982 ACATCACATGTCCCAATGCAATA 58.720 39.130 0.00 0.00 39.92 1.90
164 165 3.101437 ACATCACATGTCCCAATGCAAT 58.899 40.909 0.00 0.00 39.92 3.56
165 166 2.527497 ACATCACATGTCCCAATGCAA 58.473 42.857 0.00 0.00 39.92 4.08
166 167 2.219080 ACATCACATGTCCCAATGCA 57.781 45.000 0.00 0.00 39.92 3.96
167 168 2.883574 CAACATCACATGTCCCAATGC 58.116 47.619 0.00 0.00 44.07 3.56
168 169 2.231721 TGCAACATCACATGTCCCAATG 59.768 45.455 0.00 0.45 44.07 2.82
169 170 2.494471 CTGCAACATCACATGTCCCAAT 59.506 45.455 0.00 0.00 44.07 3.16
170 171 1.887854 CTGCAACATCACATGTCCCAA 59.112 47.619 0.00 0.00 44.07 4.12
171 172 1.202915 ACTGCAACATCACATGTCCCA 60.203 47.619 0.00 0.00 44.07 4.37
172 173 1.538047 ACTGCAACATCACATGTCCC 58.462 50.000 0.00 0.00 44.07 4.46
173 174 3.753272 AGTTACTGCAACATCACATGTCC 59.247 43.478 0.00 0.00 44.07 4.02
174 175 5.446473 GCTAGTTACTGCAACATCACATGTC 60.446 44.000 0.00 0.00 44.07 3.06
176 177 4.633126 AGCTAGTTACTGCAACATCACATG 59.367 41.667 0.00 0.00 39.81 3.21
177 178 4.836825 AGCTAGTTACTGCAACATCACAT 58.163 39.130 0.00 0.00 39.81 3.21
178 179 4.271696 AGCTAGTTACTGCAACATCACA 57.728 40.909 0.00 0.00 39.81 3.58
179 180 5.869888 ACTTAGCTAGTTACTGCAACATCAC 59.130 40.000 0.00 0.00 39.81 3.06
180 181 6.037786 ACTTAGCTAGTTACTGCAACATCA 57.962 37.500 0.00 0.00 39.81 3.07
181 182 6.969828 AACTTAGCTAGTTACTGCAACATC 57.030 37.500 0.00 0.00 45.22 3.06
191 192 9.638176 AGGCAGTTATAGTAACTTAGCTAGTTA 57.362 33.333 10.09 10.09 45.22 2.24
193 194 8.000127 AGAGGCAGTTATAGTAACTTAGCTAGT 59.000 37.037 10.21 0.00 39.32 2.57
194 195 8.398878 AGAGGCAGTTATAGTAACTTAGCTAG 57.601 38.462 10.21 0.00 0.00 3.42
195 196 8.219178 AGAGAGGCAGTTATAGTAACTTAGCTA 58.781 37.037 10.21 0.00 0.00 3.32
196 197 7.064229 AGAGAGGCAGTTATAGTAACTTAGCT 58.936 38.462 10.21 0.00 0.00 3.32
197 198 7.279750 AGAGAGGCAGTTATAGTAACTTAGC 57.720 40.000 0.00 2.53 0.00 3.09
198 199 7.722285 AGGAGAGAGGCAGTTATAGTAACTTAG 59.278 40.741 0.00 0.00 0.00 2.18
199 200 7.584532 AGGAGAGAGGCAGTTATAGTAACTTA 58.415 38.462 0.00 0.00 0.00 2.24
200 201 6.436890 AGGAGAGAGGCAGTTATAGTAACTT 58.563 40.000 0.00 0.00 0.00 2.66
201 202 6.020881 AGGAGAGAGGCAGTTATAGTAACT 57.979 41.667 0.00 0.00 0.00 2.24
202 203 5.828859 TGAGGAGAGAGGCAGTTATAGTAAC 59.171 44.000 0.00 0.00 0.00 2.50
203 204 6.014771 TGAGGAGAGAGGCAGTTATAGTAA 57.985 41.667 0.00 0.00 0.00 2.24
204 205 5.648330 TGAGGAGAGAGGCAGTTATAGTA 57.352 43.478 0.00 0.00 0.00 1.82
205 206 4.528076 TGAGGAGAGAGGCAGTTATAGT 57.472 45.455 0.00 0.00 0.00 2.12
206 207 7.232534 AGTTAATGAGGAGAGAGGCAGTTATAG 59.767 40.741 0.00 0.00 0.00 1.31
207 208 7.069986 AGTTAATGAGGAGAGAGGCAGTTATA 58.930 38.462 0.00 0.00 0.00 0.98
208 209 5.902431 AGTTAATGAGGAGAGAGGCAGTTAT 59.098 40.000 0.00 0.00 0.00 1.89
209 210 5.273208 AGTTAATGAGGAGAGAGGCAGTTA 58.727 41.667 0.00 0.00 0.00 2.24
210 211 4.100373 AGTTAATGAGGAGAGAGGCAGTT 58.900 43.478 0.00 0.00 0.00 3.16
211 212 3.704061 GAGTTAATGAGGAGAGAGGCAGT 59.296 47.826 0.00 0.00 0.00 4.40
212 213 3.703556 TGAGTTAATGAGGAGAGAGGCAG 59.296 47.826 0.00 0.00 0.00 4.85
213 214 3.713003 TGAGTTAATGAGGAGAGAGGCA 58.287 45.455 0.00 0.00 0.00 4.75
214 215 4.953940 ATGAGTTAATGAGGAGAGAGGC 57.046 45.455 0.00 0.00 0.00 4.70
215 216 5.055812 GCAATGAGTTAATGAGGAGAGAGG 58.944 45.833 0.00 0.00 0.00 3.69
216 217 5.055812 GGCAATGAGTTAATGAGGAGAGAG 58.944 45.833 0.00 0.00 0.00 3.20
217 218 4.471025 TGGCAATGAGTTAATGAGGAGAGA 59.529 41.667 0.00 0.00 0.00 3.10
218 219 4.574013 GTGGCAATGAGTTAATGAGGAGAG 59.426 45.833 0.00 0.00 0.00 3.20
219 220 4.019411 TGTGGCAATGAGTTAATGAGGAGA 60.019 41.667 0.00 0.00 0.00 3.71
220 221 4.264253 TGTGGCAATGAGTTAATGAGGAG 58.736 43.478 0.00 0.00 0.00 3.69
221 222 4.299586 TGTGGCAATGAGTTAATGAGGA 57.700 40.909 0.00 0.00 0.00 3.71
222 223 6.698008 TTATGTGGCAATGAGTTAATGAGG 57.302 37.500 0.00 0.00 0.00 3.86
223 224 6.183360 TGCTTATGTGGCAATGAGTTAATGAG 60.183 38.462 0.00 0.00 36.71 2.90
224 225 5.651576 TGCTTATGTGGCAATGAGTTAATGA 59.348 36.000 0.00 0.00 36.71 2.57
225 226 5.893687 TGCTTATGTGGCAATGAGTTAATG 58.106 37.500 0.00 0.00 36.71 1.90
226 227 6.528537 TTGCTTATGTGGCAATGAGTTAAT 57.471 33.333 0.00 0.00 43.50 1.40
227 228 5.973899 TTGCTTATGTGGCAATGAGTTAA 57.026 34.783 0.00 0.00 43.50 2.01
228 229 5.476599 ACTTTGCTTATGTGGCAATGAGTTA 59.523 36.000 16.93 0.00 46.81 2.24
229 230 4.281688 ACTTTGCTTATGTGGCAATGAGTT 59.718 37.500 16.93 0.00 46.81 3.01
230 231 3.828451 ACTTTGCTTATGTGGCAATGAGT 59.172 39.130 16.93 9.55 46.81 3.41
231 232 4.445452 ACTTTGCTTATGTGGCAATGAG 57.555 40.909 16.93 9.05 46.81 2.90
232 233 4.558178 CAACTTTGCTTATGTGGCAATGA 58.442 39.130 16.93 0.00 46.81 2.57
233 234 4.914312 CAACTTTGCTTATGTGGCAATG 57.086 40.909 11.03 11.03 46.81 2.82
246 247 2.287248 GAGTCCAACTCAGCAACTTTGC 60.287 50.000 5.79 5.79 44.45 3.68
247 248 2.032549 CGAGTCCAACTCAGCAACTTTG 60.033 50.000 7.78 0.00 45.30 2.77
248 249 2.158957 TCGAGTCCAACTCAGCAACTTT 60.159 45.455 7.78 0.00 45.30 2.66
249 250 1.412710 TCGAGTCCAACTCAGCAACTT 59.587 47.619 7.78 0.00 45.30 2.66
250 251 1.040646 TCGAGTCCAACTCAGCAACT 58.959 50.000 7.78 0.00 45.30 3.16
251 252 1.728971 CATCGAGTCCAACTCAGCAAC 59.271 52.381 7.78 0.00 45.30 4.17
252 253 1.344438 ACATCGAGTCCAACTCAGCAA 59.656 47.619 7.78 0.00 45.30 3.91
253 254 0.969149 ACATCGAGTCCAACTCAGCA 59.031 50.000 7.78 0.00 45.30 4.41
254 255 2.086054 AACATCGAGTCCAACTCAGC 57.914 50.000 7.78 0.00 45.30 4.26
255 256 4.169508 CAGTAACATCGAGTCCAACTCAG 58.830 47.826 7.78 1.37 45.30 3.35
256 257 3.614150 GCAGTAACATCGAGTCCAACTCA 60.614 47.826 7.78 0.00 45.30 3.41
257 258 2.924290 GCAGTAACATCGAGTCCAACTC 59.076 50.000 0.00 0.00 41.71 3.01
258 259 2.563179 AGCAGTAACATCGAGTCCAACT 59.437 45.455 0.00 0.00 0.00 3.16
259 260 2.668457 CAGCAGTAACATCGAGTCCAAC 59.332 50.000 0.00 0.00 0.00 3.77
260 261 2.560981 TCAGCAGTAACATCGAGTCCAA 59.439 45.455 0.00 0.00 0.00 3.53
261 262 2.167662 TCAGCAGTAACATCGAGTCCA 58.832 47.619 0.00 0.00 0.00 4.02
262 263 2.941453 TCAGCAGTAACATCGAGTCC 57.059 50.000 0.00 0.00 0.00 3.85
263 264 3.839293 ACTTCAGCAGTAACATCGAGTC 58.161 45.455 0.00 0.00 31.97 3.36
264 265 3.944055 ACTTCAGCAGTAACATCGAGT 57.056 42.857 0.00 0.00 31.97 4.18
265 266 5.403246 AGTAACTTCAGCAGTAACATCGAG 58.597 41.667 0.00 0.00 32.94 4.04
266 267 5.183331 AGAGTAACTTCAGCAGTAACATCGA 59.817 40.000 0.00 0.00 32.94 3.59
267 268 5.403246 AGAGTAACTTCAGCAGTAACATCG 58.597 41.667 0.00 0.00 32.94 3.84
268 269 6.309251 GTGAGAGTAACTTCAGCAGTAACATC 59.691 42.308 0.00 0.00 32.94 3.06
269 270 6.015010 AGTGAGAGTAACTTCAGCAGTAACAT 60.015 38.462 0.00 0.00 32.94 2.71
270 271 5.302059 AGTGAGAGTAACTTCAGCAGTAACA 59.698 40.000 0.00 0.00 32.94 2.41
271 272 5.631512 CAGTGAGAGTAACTTCAGCAGTAAC 59.368 44.000 0.00 0.00 32.94 2.50
272 273 5.302059 ACAGTGAGAGTAACTTCAGCAGTAA 59.698 40.000 0.00 0.00 32.94 2.24
273 274 4.827835 ACAGTGAGAGTAACTTCAGCAGTA 59.172 41.667 0.00 0.00 32.94 2.74
274 275 3.639094 ACAGTGAGAGTAACTTCAGCAGT 59.361 43.478 0.00 0.00 37.30 4.40
275 276 3.986572 CACAGTGAGAGTAACTTCAGCAG 59.013 47.826 0.00 0.00 0.00 4.24
276 277 3.243873 CCACAGTGAGAGTAACTTCAGCA 60.244 47.826 0.62 0.00 0.00 4.41
277 278 3.321497 CCACAGTGAGAGTAACTTCAGC 58.679 50.000 0.62 0.00 0.00 4.26
278 279 3.006323 AGCCACAGTGAGAGTAACTTCAG 59.994 47.826 0.62 0.00 0.00 3.02
279 280 2.965831 AGCCACAGTGAGAGTAACTTCA 59.034 45.455 0.62 0.00 0.00 3.02
280 281 3.669251 AGCCACAGTGAGAGTAACTTC 57.331 47.619 0.62 0.00 0.00 3.01
281 282 4.153411 ACTAGCCACAGTGAGAGTAACTT 58.847 43.478 0.62 0.00 0.00 2.66
282 283 3.759618 GACTAGCCACAGTGAGAGTAACT 59.240 47.826 0.62 0.00 0.00 2.24
283 284 3.426426 CGACTAGCCACAGTGAGAGTAAC 60.426 52.174 0.62 0.00 0.00 2.50
284 285 2.747989 CGACTAGCCACAGTGAGAGTAA 59.252 50.000 0.62 0.00 0.00 2.24
285 286 2.290134 ACGACTAGCCACAGTGAGAGTA 60.290 50.000 0.62 0.00 0.00 2.59
286 287 1.169577 CGACTAGCCACAGTGAGAGT 58.830 55.000 0.62 1.83 0.00 3.24
287 288 1.169577 ACGACTAGCCACAGTGAGAG 58.830 55.000 0.62 0.00 0.00 3.20
288 289 2.357075 CTACGACTAGCCACAGTGAGA 58.643 52.381 0.62 0.00 0.00 3.27
289 290 1.202200 GCTACGACTAGCCACAGTGAG 60.202 57.143 0.62 0.00 39.79 3.51
290 291 0.809385 GCTACGACTAGCCACAGTGA 59.191 55.000 0.62 0.00 39.79 3.41
291 292 0.811915 AGCTACGACTAGCCACAGTG 59.188 55.000 1.68 0.00 46.01 3.66
292 293 1.096416 GAGCTACGACTAGCCACAGT 58.904 55.000 1.68 0.00 46.01 3.55
293 294 0.382515 GGAGCTACGACTAGCCACAG 59.617 60.000 1.68 0.00 46.01 3.66
294 295 1.035932 GGGAGCTACGACTAGCCACA 61.036 60.000 1.68 0.00 46.01 4.17
295 296 1.734748 GGGAGCTACGACTAGCCAC 59.265 63.158 1.68 0.00 46.01 5.01
296 297 1.822613 CGGGAGCTACGACTAGCCA 60.823 63.158 4.39 0.00 46.01 4.75
297 298 3.032339 CGGGAGCTACGACTAGCC 58.968 66.667 4.39 0.00 46.01 3.93
390 391 1.070758 GGACAGACATCATACGGCCAT 59.929 52.381 2.24 0.00 0.00 4.40
395 396 1.597199 CGGACGGACAGACATCATACG 60.597 57.143 0.00 0.00 0.00 3.06
398 399 1.141881 GCGGACGGACAGACATCAT 59.858 57.895 0.00 0.00 0.00 2.45
403 404 2.820767 CTTGAGGCGGACGGACAGAC 62.821 65.000 0.00 0.00 0.00 3.51
426 429 7.995289 ACACAAAGTTTCACATGTTCTTATCA 58.005 30.769 0.00 0.00 0.00 2.15
427 430 8.856490 AACACAAAGTTTCACATGTTCTTATC 57.144 30.769 0.00 0.00 37.03 1.75
447 450 4.215399 GCAGTCAAAGGTAAGCATAACACA 59.785 41.667 0.00 0.00 0.00 3.72
464 467 8.766000 TTAAATTTCATCTACTTACGCAGTCA 57.234 30.769 0.00 0.00 43.93 3.41
694 2788 6.207928 TGCAGATTGAACAACACACTATTTG 58.792 36.000 0.00 0.00 0.00 2.32
715 2809 5.639139 AGATAGTAGATGAGAGGTGATGCA 58.361 41.667 0.00 0.00 0.00 3.96
781 2875 6.091441 GTGTAGGACTTTTCAGACATGATGAC 59.909 42.308 0.00 0.00 34.73 3.06
803 2897 1.614317 GGCTGCAAATCTAGTGGGTGT 60.614 52.381 0.50 0.00 0.00 4.16
812 2906 4.441079 GCAATTATGAGTGGCTGCAAATCT 60.441 41.667 6.02 0.00 0.00 2.40
816 2910 1.132834 CGCAATTATGAGTGGCTGCAA 59.867 47.619 0.50 0.00 0.00 4.08
842 2936 1.079503 GGCAGAGCAAAGGTAAGACG 58.920 55.000 0.00 0.00 0.00 4.18
848 2942 3.766545 TCTTAATTGGCAGAGCAAAGGT 58.233 40.909 0.00 0.00 0.00 3.50
858 2952 5.048846 GGAACTCCCTATCTTAATTGGCA 57.951 43.478 0.00 0.00 0.00 4.92
993 3114 0.463204 AGACAGGAGCCATCGACATG 59.537 55.000 0.00 0.00 0.00 3.21
996 3117 1.066303 CAGTAGACAGGAGCCATCGAC 59.934 57.143 0.00 0.00 0.00 4.20
1041 3162 3.746949 GAGCATCGGGGGCAGACAG 62.747 68.421 0.00 0.00 0.00 3.51
1120 3241 3.069300 CAGAACGGATCAGAGATGGTGAT 59.931 47.826 0.00 0.00 37.36 3.06
1465 3594 3.196207 TTGTCTGCACCAGGCCTCC 62.196 63.158 0.00 0.00 43.89 4.30
1495 3639 2.357034 CACCACCCACTCGTTCCG 60.357 66.667 0.00 0.00 0.00 4.30
1521 3665 3.381983 TCGTGATGCACTCCCGCT 61.382 61.111 0.00 0.00 31.34 5.52
1578 3722 3.422303 GGCACGACGCTTGCATCA 61.422 61.111 11.89 0.00 42.12 3.07
1610 3754 1.954146 GCGTTCGTCTTGCCTGACA 60.954 57.895 6.93 0.00 36.82 3.58
1731 3877 8.493547 AGTGTAGCTACGAACTTGATTAAAAAC 58.506 33.333 18.74 5.69 0.00 2.43
1851 3997 2.384828 TCATAGAGCTTCCACGCCTAA 58.615 47.619 0.00 0.00 0.00 2.69
1870 4016 7.069085 TCTCAAATTGGGGATCTCAATTGATTC 59.931 37.037 20.11 9.06 42.06 2.52
1897 4151 7.601073 TGAGCAAGTCAAAATCATGTACTAG 57.399 36.000 0.00 0.00 29.64 2.57
2079 4393 4.870426 GCCACGAAATGATTGAGAACTAGA 59.130 41.667 0.00 0.00 0.00 2.43
2085 4399 2.083774 GGTGCCACGAAATGATTGAGA 58.916 47.619 0.00 0.00 0.00 3.27
2126 4440 1.153086 CCCTTCGCTCTCCCCATTG 60.153 63.158 0.00 0.00 0.00 2.82
2127 4441 1.306997 TCCCTTCGCTCTCCCCATT 60.307 57.895 0.00 0.00 0.00 3.16
2134 4448 0.907230 AAGCTTCCTCCCTTCGCTCT 60.907 55.000 0.00 0.00 0.00 4.09
2139 4453 5.836358 TCTCTTATCTAAGCTTCCTCCCTTC 59.164 44.000 0.00 0.00 33.40 3.46
2149 4463 6.128391 CGAGAGCGTATTCTCTTATCTAAGCT 60.128 42.308 10.51 0.00 43.05 3.74
2191 4505 3.556423 CGTTGGTACCTGGTAGAGCTTTT 60.556 47.826 14.36 0.00 0.00 2.27
2205 4519 5.032220 CCAAACACTTTTTCTCGTTGGTAC 58.968 41.667 0.00 0.00 0.00 3.34
2206 4520 4.439016 GCCAAACACTTTTTCTCGTTGGTA 60.439 41.667 0.00 0.00 0.00 3.25
2207 4521 3.674955 GCCAAACACTTTTTCTCGTTGGT 60.675 43.478 0.00 0.00 0.00 3.67
2208 4522 2.857748 GCCAAACACTTTTTCTCGTTGG 59.142 45.455 0.00 0.00 0.00 3.77
2209 4523 3.303229 GTGCCAAACACTTTTTCTCGTTG 59.697 43.478 0.00 0.00 46.41 4.10
2210 4524 3.507786 GTGCCAAACACTTTTTCTCGTT 58.492 40.909 0.00 0.00 46.41 3.85
2211 4525 3.145212 GTGCCAAACACTTTTTCTCGT 57.855 42.857 0.00 0.00 46.41 4.18
2230 4544 2.452600 TCAACCTCTTTTTGGCCTGT 57.547 45.000 3.32 0.00 0.00 4.00
2232 4546 2.158325 TGGATCAACCTCTTTTTGGCCT 60.158 45.455 3.32 0.00 39.86 5.19
2233 4547 2.029020 GTGGATCAACCTCTTTTTGGCC 60.029 50.000 0.00 0.00 39.86 5.36
2609 4923 0.611200 CACGGTCCTGTATTGGTCCA 59.389 55.000 0.00 0.00 35.48 4.02
2679 5002 2.672996 CCAACACGGGCCCTCAAG 60.673 66.667 22.43 6.52 0.00 3.02
2687 5010 2.819595 CGGCATCTCCAACACGGG 60.820 66.667 0.00 0.00 34.36 5.28
2738 5063 4.778579 AGCAGCATCTCTTAACATGTCAT 58.221 39.130 0.00 0.00 0.00 3.06
2748 5073 4.256920 ACGTCAAAATAGCAGCATCTCTT 58.743 39.130 0.00 0.00 0.00 2.85
2769 5094 6.696148 CCGGTAGTTTCTAAGATGTCATGTAC 59.304 42.308 0.00 0.00 0.00 2.90
2799 5124 9.552114 GAAAGATCAGTAGAATGACAACAAATG 57.448 33.333 0.00 0.00 30.46 2.32
2802 5127 6.655003 GGGAAAGATCAGTAGAATGACAACAA 59.345 38.462 0.00 0.00 30.46 2.83
2805 5130 5.046591 ACGGGAAAGATCAGTAGAATGACAA 60.047 40.000 0.00 0.00 30.46 3.18
2811 5136 3.760151 TCGAACGGGAAAGATCAGTAGAA 59.240 43.478 0.00 0.00 0.00 2.10
2841 5166 4.499040 GCACGCGACATAAGCAAATAAATT 59.501 37.500 15.93 0.00 34.19 1.82
2848 5174 0.801872 AATGCACGCGACATAAGCAA 59.198 45.000 15.93 0.00 38.85 3.91
3041 5370 4.558538 AGTTTGTGACAAAGTCTCATGC 57.441 40.909 11.54 0.00 36.25 4.06
3047 5376 6.619801 AGTATGGAAGTTTGTGACAAAGTC 57.380 37.500 17.76 14.20 0.00 3.01
3079 5419 5.621193 AGACTTAGCAGTTTGCCTTTAGAA 58.379 37.500 0.00 0.00 46.52 2.10
3120 5471 9.959721 TGGTTAATTTTAGACTTAGCAATCTCT 57.040 29.630 0.00 0.00 0.00 3.10
3320 5699 4.569719 CCCCCAAACTAGACATGTTAGT 57.430 45.455 0.00 7.29 32.90 2.24
3366 5745 2.493675 GCTTTGGGAGGATGAAAAGACC 59.506 50.000 0.00 0.00 32.53 3.85
3470 5849 7.285401 TCCTTGAAAGAGCTAGTCATTTGTTTT 59.715 33.333 0.00 0.00 0.00 2.43
3543 5922 1.412343 GGCAACCACACAACCATCTTT 59.588 47.619 0.00 0.00 0.00 2.52
3551 5930 1.999071 GCTTCACGGCAACCACACAA 61.999 55.000 0.00 0.00 0.00 3.33
3614 5993 4.235079 TGTCCTACCAATGCTAATTGCT 57.765 40.909 0.00 0.00 41.66 3.91
3782 6161 1.133025 GCGATGCCAAGTGCTATTTGT 59.867 47.619 0.00 0.00 42.00 2.83
4104 6483 1.410882 GCTTGAGCTCTCGGTATTCCT 59.589 52.381 16.19 0.00 38.21 3.36
4148 6527 6.398234 ACCTGTTCTGCTATACTGTCATAG 57.602 41.667 0.00 0.00 0.00 2.23
4518 6921 4.268644 CACGATGCAACGTCTGAGAAATAT 59.731 41.667 19.84 0.00 44.76 1.28
4524 6927 0.710567 GACACGATGCAACGTCTGAG 59.289 55.000 19.84 10.81 44.76 3.35
4647 7053 4.605640 ACCATTGTTGGAAGTTGGAATG 57.394 40.909 0.00 0.00 46.92 2.67
4708 7116 3.071167 GGCCCCTAACTACTTGTCTATGG 59.929 52.174 0.00 0.00 0.00 2.74
4732 7140 0.320073 CGACGCTTACTGGGTTTCCA 60.320 55.000 0.00 0.00 42.14 3.53
4777 7185 6.429078 GGTTTCTTAATTTTGTAGGGTCGTCT 59.571 38.462 0.00 0.00 0.00 4.18
4851 7259 9.098355 TGTTTCATTCTTGGATAAGATACTTCG 57.902 33.333 0.00 0.00 42.25 3.79
4941 7349 3.245586 TGGTTCTATGGTTGATTTGGCCT 60.246 43.478 3.32 0.00 0.00 5.19
4961 7376 2.116736 TTCAGTGCGCTCGCTTTTGG 62.117 55.000 9.73 1.49 42.51 3.28
4964 7379 0.593128 AAATTCAGTGCGCTCGCTTT 59.407 45.000 9.73 3.74 42.51 3.51
4985 7400 2.960170 GCCAAGAGCAGCAAGGTG 59.040 61.111 0.00 0.00 42.97 4.00
5003 7418 2.374170 AGTAGGTGAAAATCCCGTGGTT 59.626 45.455 0.00 0.00 0.00 3.67
5009 7424 2.684038 GCCAGGAGTAGGTGAAAATCCC 60.684 54.545 0.00 0.00 0.00 3.85
5010 7425 2.644676 GCCAGGAGTAGGTGAAAATCC 58.355 52.381 0.00 0.00 0.00 3.01
5011 7426 2.280628 CGCCAGGAGTAGGTGAAAATC 58.719 52.381 0.00 0.00 38.96 2.17
5014 7429 1.295423 GCGCCAGGAGTAGGTGAAA 59.705 57.895 0.00 0.00 38.96 2.69
5015 7430 2.978824 GCGCCAGGAGTAGGTGAA 59.021 61.111 0.00 0.00 38.96 3.18
5016 7431 3.449227 CGCGCCAGGAGTAGGTGA 61.449 66.667 0.00 0.00 38.96 4.02
5017 7432 4.514577 CCGCGCCAGGAGTAGGTG 62.515 72.222 0.00 0.00 39.63 4.00
5035 7500 1.736282 CACGGTAGCGTGATGTGCA 60.736 57.895 36.97 0.00 41.92 4.57
5045 7510 1.202121 GGAGAGTAACGACACGGTAGC 60.202 57.143 0.00 0.00 26.44 3.58
5052 7517 2.295349 GTGTTGAGGGAGAGTAACGACA 59.705 50.000 0.00 0.00 0.00 4.35
5054 7519 1.891150 GGTGTTGAGGGAGAGTAACGA 59.109 52.381 0.00 0.00 0.00 3.85
5077 7542 4.759205 AAATGCTGGGCCCCGGAC 62.759 66.667 22.27 6.39 29.82 4.79
5101 7567 2.436646 CATGGCTCCGGTGGTCAC 60.437 66.667 0.00 0.00 0.00 3.67
5112 7578 2.124570 CTTGCTACGGCCATGGCT 60.125 61.111 34.70 19.81 41.60 4.75
5128 7594 2.512286 CCACGTGATCGCATGGCT 60.512 61.111 19.30 0.00 41.18 4.75
5154 7620 1.332178 CACGACGAAGAGCTTCTCAC 58.668 55.000 0.00 0.09 37.44 3.51
5184 7650 2.819667 CTGCAATCCGGAGCTATCG 58.180 57.895 11.34 0.00 0.00 2.92
5241 7707 2.175621 CATGCCTCGATTCGCTGCA 61.176 57.895 19.56 19.56 37.45 4.41
5244 7710 2.590007 GCCATGCCTCGATTCGCT 60.590 61.111 0.00 0.00 0.00 4.93
5313 7783 4.763793 AGAGCACAAATCTGCAAGTGTTAT 59.236 37.500 0.00 0.00 39.86 1.89
5349 7819 5.991328 TTTTTGTTTGTTTGCAGTGAACA 57.009 30.435 0.00 0.00 35.36 3.18
5376 7847 5.048846 AGACAAAAGCCTTTTCTGGTAGA 57.951 39.130 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.