Multiple sequence alignment - TraesCS3B01G058000

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G058000 chr3B 100.000 8786 0 0 1 8786 30270128 30278913 0.000000e+00 16225.0
1 TraesCS3B01G058000 chr3B 97.161 2818 61 5 396 3195 29885522 29888338 0.000000e+00 4743.0
2 TraesCS3B01G058000 chr3B 95.430 2560 87 12 6225 8775 29890043 29892581 0.000000e+00 4052.0
3 TraesCS3B01G058000 chr3B 96.193 1681 50 5 4567 6245 29888332 29890000 0.000000e+00 2737.0
4 TraesCS3B01G058000 chr3B 87.537 2335 234 26 6335 8636 29951490 29953800 0.000000e+00 2647.0
5 TraesCS3B01G058000 chr3B 90.300 1969 167 17 6425 8376 29717868 29719829 0.000000e+00 2556.0
6 TraesCS3B01G058000 chr3B 89.846 1428 133 8 6474 7897 30438315 30439734 0.000000e+00 1823.0
7 TraesCS3B01G058000 chr3B 95.122 1107 39 8 3191 4289 689506598 689507697 0.000000e+00 1731.0
8 TraesCS3B01G058000 chr3B 92.072 1110 60 13 3194 4289 763430700 763431795 0.000000e+00 1537.0
9 TraesCS3B01G058000 chr3B 84.300 1293 171 22 6499 7787 29734493 29735757 0.000000e+00 1234.0
10 TraesCS3B01G058000 chr3B 95.545 404 2 1 1 404 29878407 29878794 4.480000e-177 632.0
11 TraesCS3B01G058000 chr3B 84.268 642 86 9 833 1472 29576758 29576130 5.830000e-171 612.0
12 TraesCS3B01G058000 chr3B 83.956 642 87 9 833 1472 30081648 30081021 1.260000e-167 601.0
13 TraesCS3B01G058000 chr3B 79.881 671 110 17 1080 1741 27516801 27517455 1.340000e-127 468.0
14 TraesCS3B01G058000 chr3B 95.819 287 12 0 3 289 141435906 141436192 1.730000e-126 464.0
15 TraesCS3B01G058000 chr3B 97.581 124 3 0 281 404 428362163 428362286 6.910000e-51 213.0
16 TraesCS3B01G058000 chr3B 97.581 124 3 0 281 404 750017251 750017374 6.910000e-51 213.0
17 TraesCS3B01G058000 chr3B 78.305 295 58 5 5946 6234 29717313 29717607 1.510000e-42 185.0
18 TraesCS3B01G058000 chr3B 86.667 150 20 0 1562 1711 29576102 29575953 5.460000e-37 167.0
19 TraesCS3B01G058000 chr3B 86.667 150 20 0 1562 1711 30080993 30080844 5.460000e-37 167.0
20 TraesCS3B01G058000 chr3B 84.181 177 18 3 8374 8544 29720031 29720203 7.060000e-36 163.0
21 TraesCS3B01G058000 chr3D 93.800 2000 102 10 6794 8783 18694124 18696111 0.000000e+00 2987.0
22 TraesCS3B01G058000 chr3D 88.773 1532 143 18 6425 7930 18730442 18731970 0.000000e+00 1849.0
23 TraesCS3B01G058000 chr3D 86.887 1121 139 8 6499 7615 18952663 18953779 0.000000e+00 1249.0
24 TraesCS3B01G058000 chr3D 80.182 661 116 9 1082 1741 17516697 17516051 1.720000e-131 481.0
25 TraesCS3B01G058000 chr3D 79.326 682 111 20 1082 1741 17645284 17644611 1.350000e-122 451.0
26 TraesCS3B01G058000 chr3D 79.116 656 119 12 1082 1734 17374462 17375102 3.770000e-118 436.0
27 TraesCS3B01G058000 chr3D 76.246 682 103 29 1082 1741 11352378 11353022 3.080000e-79 307.0
28 TraesCS3B01G058000 chr3D 97.581 124 3 0 281 404 128662162 128662039 6.910000e-51 213.0
29 TraesCS3B01G058000 chr3D 97.581 124 3 0 281 404 484744413 484744536 6.910000e-51 213.0
30 TraesCS3B01G058000 chr3D 88.696 115 13 0 1598 1712 18906364 18906478 3.310000e-29 141.0
31 TraesCS3B01G058000 chr3D 83.186 113 19 0 1560 1672 18682366 18682478 4.340000e-18 104.0
32 TraesCS3B01G058000 chrUn 94.304 1106 51 5 3191 4289 214319106 214320206 0.000000e+00 1683.0
33 TraesCS3B01G058000 chrUn 79.118 680 119 17 1076 1741 37955885 37956555 1.740000e-121 448.0
34 TraesCS3B01G058000 chrUn 94.464 289 16 0 1 289 243236143 243236431 6.260000e-121 446.0
35 TraesCS3B01G058000 chrUn 94.464 289 16 0 1 289 243247028 243247316 6.260000e-121 446.0
36 TraesCS3B01G058000 chrUn 79.868 606 102 16 1147 1741 392408908 392408312 8.150000e-115 425.0
37 TraesCS3B01G058000 chrUn 93.031 287 20 0 3 289 313875036 313874750 3.790000e-113 420.0
38 TraesCS3B01G058000 chrUn 92.734 289 21 0 1 289 29048920 29049208 1.360000e-112 418.0
39 TraesCS3B01G058000 chrUn 92.734 289 21 0 1 289 444178877 444179165 1.360000e-112 418.0
40 TraesCS3B01G058000 chrUn 92.388 289 22 0 1 289 56762223 56762511 6.350000e-111 412.0
41 TraesCS3B01G058000 chrUn 92.361 288 22 0 2 289 86157408 86157121 2.280000e-110 411.0
42 TraesCS3B01G058000 chrUn 92.096 291 19 3 1 289 86110714 86110426 2.950000e-109 407.0
43 TraesCS3B01G058000 chrUn 91.724 290 24 0 1 290 253012818 253012529 3.820000e-108 403.0
44 TraesCS3B01G058000 chrUn 81.481 324 57 1 2297 2617 68775933 68775610 6.760000e-66 263.0
45 TraesCS3B01G058000 chrUn 95.968 124 5 0 281 404 230753962 230754085 1.500000e-47 202.0
46 TraesCS3B01G058000 chrUn 95.161 124 6 0 281 404 346346687 346346564 6.960000e-46 196.0
47 TraesCS3B01G058000 chrUn 96.581 117 4 0 281 397 12040179 12040063 2.500000e-45 195.0
48 TraesCS3B01G058000 chrUn 95.082 122 6 0 283 404 78860392 78860271 9.000000e-45 193.0
49 TraesCS3B01G058000 chrUn 93.600 125 5 3 281 404 76077698 76077820 5.420000e-42 183.0
50 TraesCS3B01G058000 chrUn 92.800 125 6 3 281 403 99128777 99128900 2.520000e-40 178.0
51 TraesCS3B01G058000 chrUn 91.729 133 2 1 281 404 51265025 51265157 9.070000e-40 176.0
52 TraesCS3B01G058000 chrUn 92.000 125 8 2 281 404 58592295 58592418 3.260000e-39 174.0
53 TraesCS3B01G058000 chrUn 91.935 124 10 0 281 404 66385298 66385175 3.260000e-39 174.0
54 TraesCS3B01G058000 chr2B 94.288 1103 51 6 3194 4289 644161027 644162124 0.000000e+00 1677.0
55 TraesCS3B01G058000 chr2B 94.203 1104 51 5 3191 4289 226219791 226220886 0.000000e+00 1672.0
56 TraesCS3B01G058000 chr2B 93.580 1106 54 8 3190 4289 198104573 198103479 0.000000e+00 1633.0
57 TraesCS3B01G058000 chr2B 91.637 1112 72 11 3188 4289 797531487 797532587 0.000000e+00 1519.0
58 TraesCS3B01G058000 chr2B 93.493 999 45 10 3300 4289 20374079 20375066 0.000000e+00 1467.0
59 TraesCS3B01G058000 chr2B 96.194 289 10 1 4286 4573 775593667 775593379 1.030000e-128 472.0
60 TraesCS3B01G058000 chr2B 95.848 289 12 0 1 289 759841949 759841661 1.340000e-127 468.0
61 TraesCS3B01G058000 chr2B 95.848 289 11 1 1 289 520885655 520885942 4.800000e-127 466.0
62 TraesCS3B01G058000 chr2B 95.238 294 12 2 4286 4578 788168369 788168077 1.730000e-126 464.0
63 TraesCS3B01G058000 chr2B 97.541 122 3 0 283 404 149234386 149234265 8.940000e-50 209.0
64 TraesCS3B01G058000 chr5B 92.579 1105 64 9 3191 4289 107926060 107927152 0.000000e+00 1570.0
65 TraesCS3B01G058000 chr5B 97.578 289 6 1 4286 4573 207157592 207157304 2.200000e-135 494.0
66 TraesCS3B01G058000 chr5B 96.516 287 10 0 3 289 643600840 643600554 7.980000e-130 475.0
67 TraesCS3B01G058000 chr5B 82.915 398 65 3 2323 2718 290810517 290810121 1.080000e-93 355.0
68 TraesCS3B01G058000 chr5B 97.581 124 3 0 281 404 226802658 226802535 6.910000e-51 213.0
69 TraesCS3B01G058000 chr7B 91.568 1103 55 22 3194 4289 463655334 463656405 0.000000e+00 1487.0
70 TraesCS3B01G058000 chr7B 86.280 1137 106 15 3192 4289 61974690 61973565 0.000000e+00 1190.0
71 TraesCS3B01G058000 chr7B 86.547 446 53 4 2297 2736 366043279 366042835 1.330000e-132 484.0
72 TraesCS3B01G058000 chr7B 96.528 288 8 2 4286 4572 616547001 616547287 7.980000e-130 475.0
73 TraesCS3B01G058000 chr7B 96.503 286 9 1 4286 4570 652328629 652328914 1.030000e-128 472.0
74 TraesCS3B01G058000 chr7B 95.848 289 12 0 1 289 510726843 510726555 1.340000e-127 468.0
75 TraesCS3B01G058000 chr7B 87.097 62 8 0 4583 4644 158374483 158374422 4.400000e-08 71.3
76 TraesCS3B01G058000 chr3A 84.609 1293 167 22 6499 7787 26427632 26428896 0.000000e+00 1256.0
77 TraesCS3B01G058000 chr3A 79.850 665 117 13 1082 1741 19371400 19372052 3.710000e-128 470.0
78 TraesCS3B01G058000 chr3A 79.237 655 118 12 1082 1733 26469248 26469887 2.910000e-119 440.0
79 TraesCS3B01G058000 chr3A 79.249 453 86 4 2289 2736 714731443 714730994 8.570000e-80 309.0
80 TraesCS3B01G058000 chr3A 89.944 179 16 2 799 976 26239007 26239184 6.860000e-56 230.0
81 TraesCS3B01G058000 chr5A 87.522 1122 91 19 3196 4280 572844894 572846003 0.000000e+00 1251.0
82 TraesCS3B01G058000 chr5A 85.956 1125 122 21 3180 4280 53226576 53227688 0.000000e+00 1170.0
83 TraesCS3B01G058000 chr5A 81.015 453 75 3 2289 2736 585072381 585071935 5.050000e-92 350.0
84 TraesCS3B01G058000 chr5A 78.877 374 64 12 2292 2658 341503910 341503545 1.140000e-58 239.0
85 TraesCS3B01G058000 chr6B 93.160 614 31 6 3191 3800 638475133 638474527 0.000000e+00 891.0
86 TraesCS3B01G058000 chr6B 97.578 289 5 2 4286 4573 638473932 638473645 2.200000e-135 494.0
87 TraesCS3B01G058000 chr6B 96.540 289 7 3 4286 4572 18673610 18673897 7.980000e-130 475.0
88 TraesCS3B01G058000 chr6B 97.581 124 3 0 281 404 268324305 268324182 6.910000e-51 213.0
89 TraesCS3B01G058000 chr2A 78.554 816 159 13 2289 3092 277615470 277616281 2.810000e-144 523.0
90 TraesCS3B01G058000 chr2A 79.618 314 56 7 2738 3047 5106912 5106603 1.490000e-52 219.0
91 TraesCS3B01G058000 chr1B 96.194 289 11 0 1 289 526067174 526066886 2.870000e-129 473.0
92 TraesCS3B01G058000 chr1B 95.848 289 12 0 1 289 454965851 454966139 1.340000e-127 468.0
93 TraesCS3B01G058000 chr1B 95.502 289 13 0 1 289 272456864 272456576 6.210000e-126 462.0
94 TraesCS3B01G058000 chr1B 95.502 289 13 0 1 289 385057095 385056807 6.210000e-126 462.0
95 TraesCS3B01G058000 chr1B 95.502 289 13 0 1 289 469677474 469677186 6.210000e-126 462.0
96 TraesCS3B01G058000 chr1B 94.079 304 13 5 4286 4585 62249045 62248743 2.890000e-124 457.0
97 TraesCS3B01G058000 chr1B 98.374 123 2 0 282 404 644899752 644899874 5.340000e-52 217.0
98 TraesCS3B01G058000 chr2D 95.848 289 12 0 1 289 163300000 163300288 1.340000e-127 468.0
99 TraesCS3B01G058000 chr2D 95.502 289 13 0 1 289 1725252 1725540 6.210000e-126 462.0
100 TraesCS3B01G058000 chr2D 83.237 346 54 2 2256 2597 614825325 614825670 1.840000e-81 315.0
101 TraesCS3B01G058000 chr2D 82.724 301 49 2 2436 2736 10304218 10304515 1.880000e-66 265.0
102 TraesCS3B01G058000 chr2D 82.392 301 50 2 2436 2736 10232689 10232986 8.750000e-65 259.0
103 TraesCS3B01G058000 chr2D 97.581 124 3 0 281 404 349231730 349231607 6.910000e-51 213.0
104 TraesCS3B01G058000 chr4A 94.684 301 14 2 4286 4584 728674123 728674423 4.800000e-127 466.0
105 TraesCS3B01G058000 chr4A 79.955 449 80 7 2292 2736 695496829 695496387 1.100000e-83 322.0
106 TraesCS3B01G058000 chr4A 77.311 238 47 5 2498 2732 550963625 550963392 5.530000e-27 134.0
107 TraesCS3B01G058000 chr4B 95.502 289 13 0 1 289 39069726 39070014 6.210000e-126 462.0
108 TraesCS3B01G058000 chr4B 95.502 289 13 0 1 289 449341874 449342162 6.210000e-126 462.0
109 TraesCS3B01G058000 chr4B 95.156 289 14 0 1 289 39055243 39055531 2.890000e-124 457.0
110 TraesCS3B01G058000 chr4B 85.235 447 61 3 2292 2736 368415807 368415364 1.040000e-123 455.0
111 TraesCS3B01G058000 chr4B 95.156 289 12 2 1 289 441412276 441411990 1.040000e-123 455.0
112 TraesCS3B01G058000 chr4B 95.122 287 14 0 3 289 395865499 395865213 3.740000e-123 453.0
113 TraesCS3B01G058000 chr4B 94.810 289 15 0 1 289 314683883 314684171 1.350000e-122 451.0
114 TraesCS3B01G058000 chr4B 94.810 289 15 0 1 289 395871221 395870933 1.350000e-122 451.0
115 TraesCS3B01G058000 chr4B 94.810 289 15 0 1 289 508761123 508760835 1.350000e-122 451.0
116 TraesCS3B01G058000 chr4B 94.810 289 15 0 1 289 537648253 537648541 1.350000e-122 451.0
117 TraesCS3B01G058000 chr4B 84.547 453 65 3 2289 2736 95704922 95705374 2.250000e-120 444.0
118 TraesCS3B01G058000 chr4B 96.774 124 4 0 281 404 91081009 91081132 3.210000e-49 207.0
119 TraesCS3B01G058000 chr4B 96.774 124 4 0 281 404 614916903 614917026 3.210000e-49 207.0
120 TraesCS3B01G058000 chr4B 79.747 237 45 3 2502 2736 69159244 69159479 1.520000e-37 169.0
121 TraesCS3B01G058000 chr4D 84.768 453 64 3 2289 2736 65146340 65146792 4.840000e-122 449.0
122 TraesCS3B01G058000 chr4D 93.772 289 18 0 1 289 509621121 509621409 1.350000e-117 435.0
123 TraesCS3B01G058000 chr4D 93.426 289 19 0 1 289 509635698 509635986 6.300000e-116 429.0
124 TraesCS3B01G058000 chr4D 97.581 124 3 0 281 404 23507620 23507497 6.910000e-51 213.0
125 TraesCS3B01G058000 chr4D 96.774 124 4 0 281 404 435453810 435453687 3.210000e-49 207.0
126 TraesCS3B01G058000 chr4D 96.774 124 4 0 281 404 496319910 496320033 3.210000e-49 207.0
127 TraesCS3B01G058000 chr4D 95.968 124 5 0 281 404 364992713 364992836 1.500000e-47 202.0
128 TraesCS3B01G058000 chr4D 95.968 124 5 0 281 404 416664639 416664762 1.500000e-47 202.0
129 TraesCS3B01G058000 chr4D 95.968 124 5 0 281 404 447818106 447818229 1.500000e-47 202.0
130 TraesCS3B01G058000 chr4D 97.436 117 3 0 281 397 232335436 232335552 5.380000e-47 200.0
131 TraesCS3B01G058000 chr4D 95.935 123 5 0 282 404 320317713 320317835 5.380000e-47 200.0
132 TraesCS3B01G058000 chr7D 77.513 796 138 17 2320 3088 108983178 108982397 2.910000e-119 440.0
133 TraesCS3B01G058000 chr7D 81.678 453 72 7 2289 2736 32062648 32063094 5.010000e-97 366.0
134 TraesCS3B01G058000 chr7D 84.615 117 17 1 4584 4700 12899820 12899705 2.000000e-21 115.0
135 TraesCS3B01G058000 chr1D 94.118 289 17 0 1 289 211265515 211265803 2.910000e-119 440.0
136 TraesCS3B01G058000 chr1D 94.118 289 17 0 1 289 211271348 211271636 2.910000e-119 440.0
137 TraesCS3B01G058000 chr1D 96.774 124 4 0 281 404 39445730 39445853 3.210000e-49 207.0
138 TraesCS3B01G058000 chr1D 82.162 185 33 0 2474 2658 9580232 9580416 9.130000e-35 159.0
139 TraesCS3B01G058000 chr6D 93.426 289 19 0 1 289 64006595 64006307 6.300000e-116 429.0
140 TraesCS3B01G058000 chr6D 93.426 289 19 0 1 289 466676711 466676999 6.300000e-116 429.0
141 TraesCS3B01G058000 chr6D 92.833 293 17 1 1 289 451470582 451470874 1.050000e-113 422.0
142 TraesCS3B01G058000 chr6D 76.755 413 73 17 2655 3047 69293532 69293123 8.940000e-50 209.0
143 TraesCS3B01G058000 chr6D 98.305 118 2 0 281 398 113864621 113864738 3.210000e-49 207.0
144 TraesCS3B01G058000 chr6D 96.774 124 4 0 281 404 342757203 342757080 3.210000e-49 207.0
145 TraesCS3B01G058000 chr6D 96.774 124 4 0 281 404 379040720 379040597 3.210000e-49 207.0
146 TraesCS3B01G058000 chr6D 95.349 129 5 1 281 408 24145870 24145998 4.160000e-48 204.0
147 TraesCS3B01G058000 chr5D 82.207 444 64 7 2296 2736 429051631 429052062 1.390000e-97 368.0
148 TraesCS3B01G058000 chr5D 80.659 455 73 7 2289 2736 464622188 464621742 1.090000e-88 339.0
149 TraesCS3B01G058000 chr5D 82.911 316 51 3 2738 3051 434613928 434613614 1.870000e-71 281.0
150 TraesCS3B01G058000 chr5D 83.453 139 22 1 4583 4720 464621230 464621092 2.570000e-25 128.0
151 TraesCS3B01G058000 chr5D 86.154 65 8 1 4585 4648 491845967 491846031 1.580000e-07 69.4
152 TraesCS3B01G058000 chr6A 82.254 355 61 2 2738 3092 530990859 530990507 1.110000e-78 305.0
153 TraesCS3B01G058000 chr6A 78.271 428 87 5 2297 2721 415021057 415021481 4.040000e-68 270.0
154 TraesCS3B01G058000 chr6A 78.109 402 64 17 2667 3047 87482019 87481621 5.300000e-57 233.0
155 TraesCS3B01G058000 chr6A 78.387 310 63 4 2734 3043 216430238 216430543 1.930000e-46 198.0
156 TraesCS3B01G058000 chr7A 87.879 66 8 0 4583 4648 409255801 409255736 2.630000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G058000 chr3B 30270128 30278913 8785 False 16225.0 16225 100.000000 1 8786 1 chr3B.!!$F5 8785
1 TraesCS3B01G058000 chr3B 29885522 29892581 7059 False 3844.0 4743 96.261333 396 8775 3 chr3B.!!$F13 8379
2 TraesCS3B01G058000 chr3B 29951490 29953800 2310 False 2647.0 2647 87.537000 6335 8636 1 chr3B.!!$F4 2301
3 TraesCS3B01G058000 chr3B 30438315 30439734 1419 False 1823.0 1823 89.846000 6474 7897 1 chr3B.!!$F6 1423
4 TraesCS3B01G058000 chr3B 689506598 689507697 1099 False 1731.0 1731 95.122000 3191 4289 1 chr3B.!!$F9 1098
5 TraesCS3B01G058000 chr3B 763430700 763431795 1095 False 1537.0 1537 92.072000 3194 4289 1 chr3B.!!$F11 1095
6 TraesCS3B01G058000 chr3B 29734493 29735757 1264 False 1234.0 1234 84.300000 6499 7787 1 chr3B.!!$F2 1288
7 TraesCS3B01G058000 chr3B 29717313 29720203 2890 False 968.0 2556 84.262000 5946 8544 3 chr3B.!!$F12 2598
8 TraesCS3B01G058000 chr3B 27516801 27517455 654 False 468.0 468 79.881000 1080 1741 1 chr3B.!!$F1 661
9 TraesCS3B01G058000 chr3B 29575953 29576758 805 True 389.5 612 85.467500 833 1711 2 chr3B.!!$R1 878
10 TraesCS3B01G058000 chr3B 30080844 30081648 804 True 384.0 601 85.311500 833 1711 2 chr3B.!!$R2 878
11 TraesCS3B01G058000 chr3D 18694124 18696111 1987 False 2987.0 2987 93.800000 6794 8783 1 chr3D.!!$F4 1989
12 TraesCS3B01G058000 chr3D 18730442 18731970 1528 False 1849.0 1849 88.773000 6425 7930 1 chr3D.!!$F5 1505
13 TraesCS3B01G058000 chr3D 18952663 18953779 1116 False 1249.0 1249 86.887000 6499 7615 1 chr3D.!!$F7 1116
14 TraesCS3B01G058000 chr3D 17516051 17516697 646 True 481.0 481 80.182000 1082 1741 1 chr3D.!!$R1 659
15 TraesCS3B01G058000 chr3D 17644611 17645284 673 True 451.0 451 79.326000 1082 1741 1 chr3D.!!$R2 659
16 TraesCS3B01G058000 chr3D 17374462 17375102 640 False 436.0 436 79.116000 1082 1734 1 chr3D.!!$F2 652
17 TraesCS3B01G058000 chr3D 11352378 11353022 644 False 307.0 307 76.246000 1082 1741 1 chr3D.!!$F1 659
18 TraesCS3B01G058000 chrUn 214319106 214320206 1100 False 1683.0 1683 94.304000 3191 4289 1 chrUn.!!$F8 1098
19 TraesCS3B01G058000 chrUn 37955885 37956555 670 False 448.0 448 79.118000 1076 1741 1 chrUn.!!$F2 665
20 TraesCS3B01G058000 chrUn 392408312 392408908 596 True 425.0 425 79.868000 1147 1741 1 chrUn.!!$R10 594
21 TraesCS3B01G058000 chr2B 644161027 644162124 1097 False 1677.0 1677 94.288000 3194 4289 1 chr2B.!!$F4 1095
22 TraesCS3B01G058000 chr2B 226219791 226220886 1095 False 1672.0 1672 94.203000 3191 4289 1 chr2B.!!$F2 1098
23 TraesCS3B01G058000 chr2B 198103479 198104573 1094 True 1633.0 1633 93.580000 3190 4289 1 chr2B.!!$R2 1099
24 TraesCS3B01G058000 chr2B 797531487 797532587 1100 False 1519.0 1519 91.637000 3188 4289 1 chr2B.!!$F5 1101
25 TraesCS3B01G058000 chr2B 20374079 20375066 987 False 1467.0 1467 93.493000 3300 4289 1 chr2B.!!$F1 989
26 TraesCS3B01G058000 chr5B 107926060 107927152 1092 False 1570.0 1570 92.579000 3191 4289 1 chr5B.!!$F1 1098
27 TraesCS3B01G058000 chr7B 463655334 463656405 1071 False 1487.0 1487 91.568000 3194 4289 1 chr7B.!!$F1 1095
28 TraesCS3B01G058000 chr7B 61973565 61974690 1125 True 1190.0 1190 86.280000 3192 4289 1 chr7B.!!$R1 1097
29 TraesCS3B01G058000 chr3A 26427632 26428896 1264 False 1256.0 1256 84.609000 6499 7787 1 chr3A.!!$F3 1288
30 TraesCS3B01G058000 chr3A 19371400 19372052 652 False 470.0 470 79.850000 1082 1741 1 chr3A.!!$F1 659
31 TraesCS3B01G058000 chr3A 26469248 26469887 639 False 440.0 440 79.237000 1082 1733 1 chr3A.!!$F4 651
32 TraesCS3B01G058000 chr5A 572844894 572846003 1109 False 1251.0 1251 87.522000 3196 4280 1 chr5A.!!$F2 1084
33 TraesCS3B01G058000 chr5A 53226576 53227688 1112 False 1170.0 1170 85.956000 3180 4280 1 chr5A.!!$F1 1100
34 TraesCS3B01G058000 chr6B 638473645 638475133 1488 True 692.5 891 95.369000 3191 4573 2 chr6B.!!$R2 1382
35 TraesCS3B01G058000 chr2A 277615470 277616281 811 False 523.0 523 78.554000 2289 3092 1 chr2A.!!$F1 803
36 TraesCS3B01G058000 chr7D 108982397 108983178 781 True 440.0 440 77.513000 2320 3088 1 chr7D.!!$R2 768
37 TraesCS3B01G058000 chr5D 464621092 464622188 1096 True 233.5 339 82.056000 2289 4720 2 chr5D.!!$R2 2431

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
282 283 0.033011 AAGGCTCGAGGAAGCTAGGA 60.033 55.000 15.58 0.0 42.13 2.94 F
283 284 0.467290 AGGCTCGAGGAAGCTAGGAG 60.467 60.000 15.58 0.0 42.13 3.69 F
284 285 0.753848 GGCTCGAGGAAGCTAGGAGT 60.754 60.000 15.58 0.0 42.13 3.85 F
2444 2517 0.625849 AAGAAATCCGGTGGCCTCAT 59.374 50.000 3.32 0.0 0.00 2.90 F
3073 3186 0.316204 CACCGGGAAACTACACGACT 59.684 55.000 6.32 0.0 39.16 4.18 F
4768 5467 1.000607 TCTTCATAGGCACGCGGTATC 60.001 52.381 12.47 0.0 0.00 2.24 F
5919 6620 0.616891 AACCCGTTGGATACTGGGTC 59.383 55.000 6.58 0.0 46.31 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 1991 1.909700 TGAAAAGCTGCTAAGTGGGG 58.090 50.000 0.90 0.0 0.00 4.96 R
2264 2319 1.951602 GGCCGCGGTAATAATCCTTTT 59.048 47.619 28.70 0.0 0.00 2.27 R
2752 2861 1.968493 AGCTCGAGGGACAAGTGTTTA 59.032 47.619 15.58 0.0 0.00 2.01 R
4598 5296 0.034059 CCAGACACGGGATGATAGCC 59.966 60.000 0.00 0.0 0.00 3.93 R
5313 6012 0.455633 CATTCTGAGCGCTGGCAAAC 60.456 55.000 18.48 0.0 43.41 2.93 R
6088 6790 0.105453 TATCCCTCCTCTCCTGCCAC 60.105 60.000 0.00 0.0 0.00 5.01 R
8231 9070 0.984230 CTTCCCAACTACCAGCCTGA 59.016 55.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.792749 CCGTTTTGAATGATTACGGGC 58.207 47.619 8.89 0.00 45.88 6.13
71 72 2.422127 CCGTTTTGAATGATTACGGGCT 59.578 45.455 8.89 0.00 45.88 5.19
72 73 3.119637 CCGTTTTGAATGATTACGGGCTT 60.120 43.478 8.89 0.00 45.88 4.35
73 74 4.481463 CGTTTTGAATGATTACGGGCTTT 58.519 39.130 0.00 0.00 0.00 3.51
74 75 5.392165 CCGTTTTGAATGATTACGGGCTTTA 60.392 40.000 8.89 0.00 45.88 1.85
75 76 6.262601 CGTTTTGAATGATTACGGGCTTTAT 58.737 36.000 0.00 0.00 0.00 1.40
76 77 6.750039 CGTTTTGAATGATTACGGGCTTTATT 59.250 34.615 0.00 0.00 0.00 1.40
77 78 7.911205 CGTTTTGAATGATTACGGGCTTTATTA 59.089 33.333 0.00 0.00 0.00 0.98
78 79 9.744468 GTTTTGAATGATTACGGGCTTTATTAT 57.256 29.630 0.00 0.00 0.00 1.28
81 82 9.562408 TTGAATGATTACGGGCTTTATTATACA 57.438 29.630 0.00 0.00 0.00 2.29
82 83 8.995220 TGAATGATTACGGGCTTTATTATACAC 58.005 33.333 0.00 0.00 0.00 2.90
83 84 9.216117 GAATGATTACGGGCTTTATTATACACT 57.784 33.333 0.00 0.00 0.00 3.55
84 85 9.569122 AATGATTACGGGCTTTATTATACACTT 57.431 29.630 0.00 0.00 0.00 3.16
85 86 8.967664 TGATTACGGGCTTTATTATACACTTT 57.032 30.769 0.00 0.00 0.00 2.66
86 87 9.398538 TGATTACGGGCTTTATTATACACTTTT 57.601 29.630 0.00 0.00 0.00 2.27
115 116 9.690913 ATTACTTTTGGGACTAACCTATTAACC 57.309 33.333 0.00 0.00 38.98 2.85
116 117 7.093965 ACTTTTGGGACTAACCTATTAACCA 57.906 36.000 0.00 0.00 38.98 3.67
117 118 7.173032 ACTTTTGGGACTAACCTATTAACCAG 58.827 38.462 0.00 0.00 38.98 4.00
118 119 6.956102 TTTGGGACTAACCTATTAACCAGA 57.044 37.500 0.00 0.00 38.98 3.86
119 120 6.555463 TTGGGACTAACCTATTAACCAGAG 57.445 41.667 0.00 0.00 38.98 3.35
120 121 4.966805 TGGGACTAACCTATTAACCAGAGG 59.033 45.833 0.00 0.00 38.98 3.69
121 122 4.202336 GGGACTAACCTATTAACCAGAGGC 60.202 50.000 0.00 0.00 38.98 4.70
122 123 4.202336 GGACTAACCTATTAACCAGAGGCC 60.202 50.000 0.00 0.00 33.28 5.19
123 124 3.715315 ACTAACCTATTAACCAGAGGCCC 59.285 47.826 0.00 0.00 33.28 5.80
124 125 2.280308 ACCTATTAACCAGAGGCCCA 57.720 50.000 0.00 0.00 33.28 5.36
125 126 2.127708 ACCTATTAACCAGAGGCCCAG 58.872 52.381 0.00 0.00 33.28 4.45
126 127 1.202818 CCTATTAACCAGAGGCCCAGC 60.203 57.143 0.00 0.00 0.00 4.85
127 128 1.771255 CTATTAACCAGAGGCCCAGCT 59.229 52.381 0.00 0.00 0.00 4.24
128 129 0.548510 ATTAACCAGAGGCCCAGCTC 59.451 55.000 0.00 0.00 0.00 4.09
129 130 0.840288 TTAACCAGAGGCCCAGCTCA 60.840 55.000 0.00 0.00 0.00 4.26
130 131 0.621571 TAACCAGAGGCCCAGCTCAT 60.622 55.000 0.00 0.00 0.00 2.90
131 132 0.621571 AACCAGAGGCCCAGCTCATA 60.622 55.000 0.00 0.00 0.00 2.15
132 133 0.401105 ACCAGAGGCCCAGCTCATAT 60.401 55.000 0.00 0.00 0.00 1.78
133 134 0.769873 CCAGAGGCCCAGCTCATATT 59.230 55.000 0.00 0.00 0.00 1.28
134 135 1.544982 CCAGAGGCCCAGCTCATATTG 60.545 57.143 0.00 0.00 0.00 1.90
135 136 1.142465 CAGAGGCCCAGCTCATATTGT 59.858 52.381 0.00 0.00 0.00 2.71
136 137 1.849039 AGAGGCCCAGCTCATATTGTT 59.151 47.619 0.00 0.00 0.00 2.83
137 138 1.952296 GAGGCCCAGCTCATATTGTTG 59.048 52.381 0.00 0.00 0.00 3.33
138 139 1.285962 AGGCCCAGCTCATATTGTTGT 59.714 47.619 0.00 0.00 0.00 3.32
139 140 2.102578 GGCCCAGCTCATATTGTTGTT 58.897 47.619 0.00 0.00 0.00 2.83
140 141 2.497273 GGCCCAGCTCATATTGTTGTTT 59.503 45.455 0.00 0.00 0.00 2.83
141 142 3.055891 GGCCCAGCTCATATTGTTGTTTT 60.056 43.478 0.00 0.00 0.00 2.43
142 143 4.159506 GGCCCAGCTCATATTGTTGTTTTA 59.840 41.667 0.00 0.00 0.00 1.52
143 144 5.163416 GGCCCAGCTCATATTGTTGTTTTAT 60.163 40.000 0.00 0.00 0.00 1.40
144 145 6.340522 GCCCAGCTCATATTGTTGTTTTATT 58.659 36.000 0.00 0.00 0.00 1.40
145 146 6.256321 GCCCAGCTCATATTGTTGTTTTATTG 59.744 38.462 0.00 0.00 0.00 1.90
146 147 6.256321 CCCAGCTCATATTGTTGTTTTATTGC 59.744 38.462 0.00 0.00 0.00 3.56
147 148 6.256321 CCAGCTCATATTGTTGTTTTATTGCC 59.744 38.462 0.00 0.00 0.00 4.52
148 149 7.037438 CAGCTCATATTGTTGTTTTATTGCCT 58.963 34.615 0.00 0.00 0.00 4.75
149 150 7.009815 CAGCTCATATTGTTGTTTTATTGCCTG 59.990 37.037 0.00 0.00 0.00 4.85
150 151 6.813152 GCTCATATTGTTGTTTTATTGCCTGT 59.187 34.615 0.00 0.00 0.00 4.00
151 152 7.331687 GCTCATATTGTTGTTTTATTGCCTGTT 59.668 33.333 0.00 0.00 0.00 3.16
152 153 9.206870 CTCATATTGTTGTTTTATTGCCTGTTT 57.793 29.630 0.00 0.00 0.00 2.83
153 154 9.202273 TCATATTGTTGTTTTATTGCCTGTTTC 57.798 29.630 0.00 0.00 0.00 2.78
154 155 8.986847 CATATTGTTGTTTTATTGCCTGTTTCA 58.013 29.630 0.00 0.00 0.00 2.69
155 156 6.900568 TTGTTGTTTTATTGCCTGTTTCAG 57.099 33.333 0.00 0.00 0.00 3.02
156 157 5.971763 TGTTGTTTTATTGCCTGTTTCAGT 58.028 33.333 0.00 0.00 0.00 3.41
157 158 7.101652 TGTTGTTTTATTGCCTGTTTCAGTA 57.898 32.000 0.00 0.00 0.00 2.74
158 159 7.721402 TGTTGTTTTATTGCCTGTTTCAGTAT 58.279 30.769 0.00 0.00 0.00 2.12
159 160 8.200792 TGTTGTTTTATTGCCTGTTTCAGTATT 58.799 29.630 0.00 0.00 0.00 1.89
160 161 9.040939 GTTGTTTTATTGCCTGTTTCAGTATTT 57.959 29.630 0.00 0.00 0.00 1.40
161 162 8.810652 TGTTTTATTGCCTGTTTCAGTATTTC 57.189 30.769 0.00 0.00 0.00 2.17
162 163 8.417106 TGTTTTATTGCCTGTTTCAGTATTTCA 58.583 29.630 0.00 0.00 0.00 2.69
163 164 9.255304 GTTTTATTGCCTGTTTCAGTATTTCAA 57.745 29.630 0.00 0.00 0.00 2.69
164 165 9.823647 TTTTATTGCCTGTTTCAGTATTTCAAA 57.176 25.926 0.00 0.00 0.00 2.69
165 166 9.474920 TTTATTGCCTGTTTCAGTATTTCAAAG 57.525 29.630 0.00 0.00 0.00 2.77
166 167 6.707440 TTGCCTGTTTCAGTATTTCAAAGA 57.293 33.333 0.00 0.00 0.00 2.52
167 168 6.707440 TGCCTGTTTCAGTATTTCAAAGAA 57.293 33.333 0.00 0.00 0.00 2.52
168 169 7.106439 TGCCTGTTTCAGTATTTCAAAGAAA 57.894 32.000 0.00 0.00 0.00 2.52
169 170 7.551585 TGCCTGTTTCAGTATTTCAAAGAAAA 58.448 30.769 0.00 0.00 30.91 2.29
170 171 7.706179 TGCCTGTTTCAGTATTTCAAAGAAAAG 59.294 33.333 0.00 0.00 30.91 2.27
171 172 7.169813 GCCTGTTTCAGTATTTCAAAGAAAAGG 59.830 37.037 0.00 0.00 33.99 3.11
172 173 8.413229 CCTGTTTCAGTATTTCAAAGAAAAGGA 58.587 33.333 0.00 0.00 33.41 3.36
173 174 9.801873 CTGTTTCAGTATTTCAAAGAAAAGGAA 57.198 29.630 0.00 0.00 30.91 3.36
183 184 8.810652 TTTCAAAGAAAAGGAATATCAAACGG 57.189 30.769 0.00 0.00 0.00 4.44
184 185 7.753309 TCAAAGAAAAGGAATATCAAACGGA 57.247 32.000 0.00 0.00 0.00 4.69
185 186 7.816640 TCAAAGAAAAGGAATATCAAACGGAG 58.183 34.615 0.00 0.00 0.00 4.63
187 188 6.986904 AGAAAAGGAATATCAAACGGAGTC 57.013 37.500 0.00 0.00 45.00 3.36
188 189 5.880887 AGAAAAGGAATATCAAACGGAGTCC 59.119 40.000 0.00 0.00 45.00 3.85
189 190 4.837093 AAGGAATATCAAACGGAGTCCA 57.163 40.909 10.49 0.00 45.00 4.02
190 191 4.837093 AGGAATATCAAACGGAGTCCAA 57.163 40.909 10.49 0.00 45.00 3.53
191 192 5.174037 AGGAATATCAAACGGAGTCCAAA 57.826 39.130 10.49 0.00 45.00 3.28
192 193 4.941873 AGGAATATCAAACGGAGTCCAAAC 59.058 41.667 10.49 0.00 45.00 2.93
193 194 4.201783 GGAATATCAAACGGAGTCCAAACG 60.202 45.833 10.49 0.00 45.00 3.60
194 195 1.519408 ATCAAACGGAGTCCAAACGG 58.481 50.000 10.49 0.00 45.00 4.44
195 196 0.464870 TCAAACGGAGTCCAAACGGA 59.535 50.000 10.49 0.00 45.00 4.69
196 197 1.134461 TCAAACGGAGTCCAAACGGAA 60.134 47.619 10.49 0.00 45.00 4.30
197 198 1.877443 CAAACGGAGTCCAAACGGAAT 59.123 47.619 10.49 0.00 45.00 3.01
198 199 1.519408 AACGGAGTCCAAACGGAATG 58.481 50.000 10.49 0.00 45.00 2.67
199 200 0.682852 ACGGAGTCCAAACGGAATGA 59.317 50.000 10.49 0.00 29.74 2.57
200 201 1.071071 ACGGAGTCCAAACGGAATGAA 59.929 47.619 10.49 0.00 29.74 2.57
201 202 2.147958 CGGAGTCCAAACGGAATGAAA 58.852 47.619 10.49 0.00 33.16 2.69
202 203 2.095919 CGGAGTCCAAACGGAATGAAAC 60.096 50.000 10.49 0.00 33.16 2.78
203 204 2.228103 GGAGTCCAAACGGAATGAAACC 59.772 50.000 3.60 0.00 33.16 3.27
204 205 3.146847 GAGTCCAAACGGAATGAAACCT 58.853 45.455 0.00 0.00 33.16 3.50
205 206 3.562182 AGTCCAAACGGAATGAAACCTT 58.438 40.909 0.00 0.00 33.16 3.50
206 207 3.568430 AGTCCAAACGGAATGAAACCTTC 59.432 43.478 0.00 0.00 33.16 3.46
207 208 2.550606 TCCAAACGGAATGAAACCTTCG 59.449 45.455 0.00 0.00 0.00 3.79
208 209 2.351350 CCAAACGGAATGAAACCTTCGG 60.351 50.000 0.00 0.00 0.00 4.30
209 210 1.530323 AACGGAATGAAACCTTCGGG 58.470 50.000 0.00 0.00 41.87 5.14
210 211 0.688487 ACGGAATGAAACCTTCGGGA 59.312 50.000 0.00 0.00 38.77 5.14
211 212 1.338769 ACGGAATGAAACCTTCGGGAG 60.339 52.381 0.00 0.00 38.77 4.30
212 213 1.095600 GGAATGAAACCTTCGGGAGC 58.904 55.000 0.00 0.00 38.77 4.70
213 214 0.727398 GAATGAAACCTTCGGGAGCG 59.273 55.000 0.00 0.00 38.77 5.03
214 215 0.036306 AATGAAACCTTCGGGAGCGT 59.964 50.000 0.00 0.00 38.77 5.07
215 216 0.673644 ATGAAACCTTCGGGAGCGTG 60.674 55.000 0.00 0.00 38.77 5.34
216 217 1.005394 GAAACCTTCGGGAGCGTGA 60.005 57.895 0.00 0.00 38.77 4.35
217 218 0.391263 GAAACCTTCGGGAGCGTGAT 60.391 55.000 0.00 0.00 38.77 3.06
218 219 0.036306 AAACCTTCGGGAGCGTGATT 59.964 50.000 0.00 0.00 38.77 2.57
219 220 0.036306 AACCTTCGGGAGCGTGATTT 59.964 50.000 0.00 0.00 38.77 2.17
220 221 0.036306 ACCTTCGGGAGCGTGATTTT 59.964 50.000 0.00 0.00 38.77 1.82
221 222 1.165270 CCTTCGGGAGCGTGATTTTT 58.835 50.000 0.00 0.00 37.25 1.94
222 223 1.135689 CCTTCGGGAGCGTGATTTTTG 60.136 52.381 0.00 0.00 37.25 2.44
223 224 0.878416 TTCGGGAGCGTGATTTTTGG 59.122 50.000 0.00 0.00 0.00 3.28
224 225 0.035598 TCGGGAGCGTGATTTTTGGA 59.964 50.000 0.00 0.00 0.00 3.53
225 226 0.878416 CGGGAGCGTGATTTTTGGAA 59.122 50.000 0.00 0.00 0.00 3.53
226 227 1.268352 CGGGAGCGTGATTTTTGGAAA 59.732 47.619 0.00 0.00 0.00 3.13
227 228 2.668279 CGGGAGCGTGATTTTTGGAAAG 60.668 50.000 0.00 0.00 0.00 2.62
228 229 2.352715 GGGAGCGTGATTTTTGGAAAGG 60.353 50.000 0.00 0.00 0.00 3.11
229 230 2.556622 GGAGCGTGATTTTTGGAAAGGA 59.443 45.455 0.00 0.00 0.00 3.36
230 231 3.193479 GGAGCGTGATTTTTGGAAAGGAT 59.807 43.478 0.00 0.00 0.00 3.24
231 232 4.398044 GGAGCGTGATTTTTGGAAAGGATA 59.602 41.667 0.00 0.00 0.00 2.59
232 233 5.067805 GGAGCGTGATTTTTGGAAAGGATAT 59.932 40.000 0.00 0.00 0.00 1.63
233 234 5.894807 AGCGTGATTTTTGGAAAGGATATG 58.105 37.500 0.00 0.00 0.00 1.78
234 235 5.652014 AGCGTGATTTTTGGAAAGGATATGA 59.348 36.000 0.00 0.00 0.00 2.15
235 236 6.322201 AGCGTGATTTTTGGAAAGGATATGAT 59.678 34.615 0.00 0.00 0.00 2.45
236 237 6.638468 GCGTGATTTTTGGAAAGGATATGATC 59.362 38.462 0.00 0.00 0.00 2.92
248 249 3.919216 GGATATGATCCGACAGACTTGG 58.081 50.000 0.00 0.00 40.13 3.61
249 250 3.574396 GGATATGATCCGACAGACTTGGA 59.426 47.826 0.00 0.00 40.13 3.53
250 251 4.321601 GGATATGATCCGACAGACTTGGAG 60.322 50.000 0.00 0.00 40.13 3.86
251 252 1.924731 TGATCCGACAGACTTGGAGT 58.075 50.000 0.00 0.00 35.68 3.85
252 253 2.248248 TGATCCGACAGACTTGGAGTT 58.752 47.619 0.00 0.00 35.68 3.01
253 254 2.231478 TGATCCGACAGACTTGGAGTTC 59.769 50.000 0.00 0.00 35.68 3.01
254 255 1.699730 TCCGACAGACTTGGAGTTCA 58.300 50.000 0.00 0.00 0.00 3.18
255 256 2.036387 TCCGACAGACTTGGAGTTCAA 58.964 47.619 0.00 0.00 0.00 2.69
264 265 3.492102 CTTGGAGTTCAAGTCAGGGAA 57.508 47.619 2.64 0.00 45.81 3.97
265 266 3.406764 CTTGGAGTTCAAGTCAGGGAAG 58.593 50.000 2.64 0.00 45.81 3.46
266 267 1.699634 TGGAGTTCAAGTCAGGGAAGG 59.300 52.381 0.00 0.00 0.00 3.46
267 268 1.611936 GGAGTTCAAGTCAGGGAAGGC 60.612 57.143 0.00 0.00 0.00 4.35
268 269 1.349357 GAGTTCAAGTCAGGGAAGGCT 59.651 52.381 0.00 0.00 0.00 4.58
269 270 1.349357 AGTTCAAGTCAGGGAAGGCTC 59.651 52.381 0.00 0.00 0.00 4.70
270 271 0.321671 TTCAAGTCAGGGAAGGCTCG 59.678 55.000 0.00 0.00 0.00 5.03
271 272 0.541998 TCAAGTCAGGGAAGGCTCGA 60.542 55.000 0.00 0.00 0.00 4.04
272 273 0.108424 CAAGTCAGGGAAGGCTCGAG 60.108 60.000 8.45 8.45 0.00 4.04
273 274 1.261238 AAGTCAGGGAAGGCTCGAGG 61.261 60.000 15.58 0.00 0.00 4.63
274 275 1.682684 GTCAGGGAAGGCTCGAGGA 60.683 63.158 15.58 0.00 0.00 3.71
275 276 1.078528 TCAGGGAAGGCTCGAGGAA 59.921 57.895 15.58 0.00 0.00 3.36
276 277 0.972983 TCAGGGAAGGCTCGAGGAAG 60.973 60.000 15.58 0.00 0.00 3.46
277 278 2.188207 GGGAAGGCTCGAGGAAGC 59.812 66.667 15.58 0.00 41.73 3.86
278 279 2.363172 GGGAAGGCTCGAGGAAGCT 61.363 63.158 15.58 0.00 42.13 3.74
279 280 1.043673 GGGAAGGCTCGAGGAAGCTA 61.044 60.000 15.58 0.00 42.13 3.32
280 281 0.387565 GGAAGGCTCGAGGAAGCTAG 59.612 60.000 15.58 0.00 42.13 3.42
281 282 0.387565 GAAGGCTCGAGGAAGCTAGG 59.612 60.000 15.58 0.00 42.13 3.02
282 283 0.033011 AAGGCTCGAGGAAGCTAGGA 60.033 55.000 15.58 0.00 42.13 2.94
283 284 0.467290 AGGCTCGAGGAAGCTAGGAG 60.467 60.000 15.58 0.00 42.13 3.69
284 285 0.753848 GGCTCGAGGAAGCTAGGAGT 60.754 60.000 15.58 0.00 42.13 3.85
285 286 1.107945 GCTCGAGGAAGCTAGGAGTT 58.892 55.000 15.58 0.00 39.27 3.01
286 287 2.299521 GCTCGAGGAAGCTAGGAGTTA 58.700 52.381 15.58 0.00 39.27 2.24
287 288 2.292292 GCTCGAGGAAGCTAGGAGTTAG 59.708 54.545 15.58 0.00 39.27 2.34
288 289 2.882137 CTCGAGGAAGCTAGGAGTTAGG 59.118 54.545 3.91 0.00 0.00 2.69
289 290 1.957877 CGAGGAAGCTAGGAGTTAGGG 59.042 57.143 0.00 0.00 0.00 3.53
290 291 2.423088 CGAGGAAGCTAGGAGTTAGGGA 60.423 54.545 0.00 0.00 0.00 4.20
291 292 3.644335 GAGGAAGCTAGGAGTTAGGGAA 58.356 50.000 0.00 0.00 0.00 3.97
292 293 3.639561 GAGGAAGCTAGGAGTTAGGGAAG 59.360 52.174 0.00 0.00 0.00 3.46
293 294 3.013073 AGGAAGCTAGGAGTTAGGGAAGT 59.987 47.826 0.00 0.00 0.00 3.01
294 295 4.232354 AGGAAGCTAGGAGTTAGGGAAGTA 59.768 45.833 0.00 0.00 0.00 2.24
295 296 5.103000 AGGAAGCTAGGAGTTAGGGAAGTAT 60.103 44.000 0.00 0.00 0.00 2.12
296 297 5.011227 GGAAGCTAGGAGTTAGGGAAGTATG 59.989 48.000 0.00 0.00 0.00 2.39
297 298 5.405063 AGCTAGGAGTTAGGGAAGTATGA 57.595 43.478 0.00 0.00 0.00 2.15
298 299 5.971493 AGCTAGGAGTTAGGGAAGTATGAT 58.029 41.667 0.00 0.00 0.00 2.45
299 300 5.777732 AGCTAGGAGTTAGGGAAGTATGATG 59.222 44.000 0.00 0.00 0.00 3.07
300 301 5.775701 GCTAGGAGTTAGGGAAGTATGATGA 59.224 44.000 0.00 0.00 0.00 2.92
301 302 6.267928 GCTAGGAGTTAGGGAAGTATGATGAA 59.732 42.308 0.00 0.00 0.00 2.57
302 303 7.038658 GCTAGGAGTTAGGGAAGTATGATGAAT 60.039 40.741 0.00 0.00 0.00 2.57
303 304 7.309770 AGGAGTTAGGGAAGTATGATGAATC 57.690 40.000 0.00 0.00 0.00 2.52
304 305 7.079048 AGGAGTTAGGGAAGTATGATGAATCT 58.921 38.462 0.00 0.00 0.00 2.40
305 306 7.570607 AGGAGTTAGGGAAGTATGATGAATCTT 59.429 37.037 0.00 0.00 0.00 2.40
306 307 7.659390 GGAGTTAGGGAAGTATGATGAATCTTG 59.341 40.741 0.00 0.00 0.00 3.02
307 308 6.995091 AGTTAGGGAAGTATGATGAATCTTGC 59.005 38.462 0.00 0.00 0.00 4.01
308 309 5.378230 AGGGAAGTATGATGAATCTTGCA 57.622 39.130 0.00 0.00 31.62 4.08
309 310 5.950023 AGGGAAGTATGATGAATCTTGCAT 58.050 37.500 0.00 0.00 31.62 3.96
310 311 6.371278 AGGGAAGTATGATGAATCTTGCATT 58.629 36.000 0.00 0.00 31.62 3.56
311 312 6.489361 AGGGAAGTATGATGAATCTTGCATTC 59.511 38.462 0.00 0.00 31.62 2.67
312 313 6.489361 GGGAAGTATGATGAATCTTGCATTCT 59.511 38.462 0.00 0.00 31.62 2.40
313 314 7.014038 GGGAAGTATGATGAATCTTGCATTCTT 59.986 37.037 0.00 0.00 33.15 2.52
314 315 8.411683 GGAAGTATGATGAATCTTGCATTCTTT 58.588 33.333 0.00 0.00 31.45 2.52
317 318 9.399797 AGTATGATGAATCTTGCATTCTTTACA 57.600 29.630 0.00 0.00 0.00 2.41
320 321 8.746922 TGATGAATCTTGCATTCTTTACAAAC 57.253 30.769 0.00 0.00 0.00 2.93
321 322 8.579006 TGATGAATCTTGCATTCTTTACAAACT 58.421 29.630 0.00 0.00 0.00 2.66
328 329 9.502091 TCTTGCATTCTTTACAAACTATACTGT 57.498 29.630 0.00 0.00 0.00 3.55
334 335 9.908152 ATTCTTTACAAACTATACTGTTTTGGC 57.092 29.630 7.39 0.00 37.98 4.52
335 336 8.453238 TCTTTACAAACTATACTGTTTTGGCA 57.547 30.769 7.39 0.00 37.98 4.92
336 337 8.564574 TCTTTACAAACTATACTGTTTTGGCAG 58.435 33.333 7.39 0.00 37.98 4.85
337 338 8.453238 TTTACAAACTATACTGTTTTGGCAGA 57.547 30.769 7.39 0.00 37.98 4.26
338 339 8.630054 TTACAAACTATACTGTTTTGGCAGAT 57.370 30.769 7.39 0.00 37.98 2.90
339 340 7.524717 ACAAACTATACTGTTTTGGCAGATT 57.475 32.000 7.39 0.00 37.98 2.40
340 341 7.370383 ACAAACTATACTGTTTTGGCAGATTG 58.630 34.615 7.39 0.00 37.98 2.67
341 342 5.567138 ACTATACTGTTTTGGCAGATTGC 57.433 39.130 0.00 0.00 44.08 3.56
342 343 5.256474 ACTATACTGTTTTGGCAGATTGCT 58.744 37.500 0.67 0.00 44.28 3.91
343 344 2.806608 ACTGTTTTGGCAGATTGCTG 57.193 45.000 0.67 0.00 44.28 4.41
344 345 2.034124 ACTGTTTTGGCAGATTGCTGT 58.966 42.857 0.67 0.00 44.28 4.40
345 346 2.431782 ACTGTTTTGGCAGATTGCTGTT 59.568 40.909 0.67 0.00 44.28 3.16
346 347 3.636300 ACTGTTTTGGCAGATTGCTGTTA 59.364 39.130 0.67 0.00 44.28 2.41
347 348 4.281688 ACTGTTTTGGCAGATTGCTGTTAT 59.718 37.500 0.67 0.00 44.28 1.89
348 349 4.558178 TGTTTTGGCAGATTGCTGTTATG 58.442 39.130 0.67 0.00 44.28 1.90
349 350 4.039004 TGTTTTGGCAGATTGCTGTTATGT 59.961 37.500 0.67 0.00 44.28 2.29
350 351 4.870123 TTTGGCAGATTGCTGTTATGTT 57.130 36.364 0.67 0.00 44.28 2.71
351 352 4.870123 TTGGCAGATTGCTGTTATGTTT 57.130 36.364 0.67 0.00 44.28 2.83
352 353 4.177165 TGGCAGATTGCTGTTATGTTTG 57.823 40.909 0.67 0.00 44.28 2.93
353 354 2.925563 GGCAGATTGCTGTTATGTTTGC 59.074 45.455 0.67 0.00 44.28 3.68
354 355 3.577667 GCAGATTGCTGTTATGTTTGCA 58.422 40.909 0.00 0.00 44.17 4.08
355 356 4.178540 GCAGATTGCTGTTATGTTTGCAT 58.821 39.130 0.00 0.00 44.17 3.96
356 357 5.342433 GCAGATTGCTGTTATGTTTGCATA 58.658 37.500 0.00 0.00 44.17 3.14
357 358 5.981315 GCAGATTGCTGTTATGTTTGCATAT 59.019 36.000 0.00 0.00 44.17 1.78
358 359 6.074516 GCAGATTGCTGTTATGTTTGCATATG 60.075 38.462 0.00 0.00 44.17 1.78
359 360 5.981315 AGATTGCTGTTATGTTTGCATATGC 59.019 36.000 21.09 21.09 37.42 3.14
360 361 4.987408 TGCTGTTATGTTTGCATATGCT 57.013 36.364 27.13 10.24 42.66 3.79
361 362 5.327616 TGCTGTTATGTTTGCATATGCTT 57.672 34.783 27.13 10.29 42.66 3.91
362 363 5.103687 TGCTGTTATGTTTGCATATGCTTG 58.896 37.500 27.13 7.23 42.66 4.01
363 364 4.026310 GCTGTTATGTTTGCATATGCTTGC 60.026 41.667 27.13 16.69 42.66 4.01
364 365 5.327616 TGTTATGTTTGCATATGCTTGCT 57.672 34.783 27.13 11.42 43.18 3.91
365 366 5.722263 TGTTATGTTTGCATATGCTTGCTT 58.278 33.333 27.13 16.06 43.18 3.91
366 367 5.577554 TGTTATGTTTGCATATGCTTGCTTG 59.422 36.000 27.13 0.00 43.18 4.01
367 368 3.663995 TGTTTGCATATGCTTGCTTGT 57.336 38.095 27.13 0.00 43.18 3.16
368 369 3.992643 TGTTTGCATATGCTTGCTTGTT 58.007 36.364 27.13 0.00 43.18 2.83
369 370 4.378774 TGTTTGCATATGCTTGCTTGTTT 58.621 34.783 27.13 0.00 43.18 2.83
370 371 5.536260 TGTTTGCATATGCTTGCTTGTTTA 58.464 33.333 27.13 1.01 43.18 2.01
371 372 5.987953 TGTTTGCATATGCTTGCTTGTTTAA 59.012 32.000 27.13 7.40 43.18 1.52
372 373 6.649973 TGTTTGCATATGCTTGCTTGTTTAAT 59.350 30.769 27.13 0.00 43.18 1.40
373 374 6.650239 TTGCATATGCTTGCTTGTTTAATG 57.350 33.333 27.13 0.00 43.18 1.90
374 375 5.963594 TGCATATGCTTGCTTGTTTAATGA 58.036 33.333 27.13 0.00 43.18 2.57
375 376 6.575267 TGCATATGCTTGCTTGTTTAATGAT 58.425 32.000 27.13 0.00 43.18 2.45
376 377 7.042950 TGCATATGCTTGCTTGTTTAATGATT 58.957 30.769 27.13 0.00 43.18 2.57
377 378 7.223193 TGCATATGCTTGCTTGTTTAATGATTC 59.777 33.333 27.13 0.00 43.18 2.52
378 379 7.437267 GCATATGCTTGCTTGTTTAATGATTCT 59.563 33.333 20.64 0.00 39.57 2.40
379 380 9.955208 CATATGCTTGCTTGTTTAATGATTCTA 57.045 29.630 0.00 0.00 0.00 2.10
382 383 9.880157 ATGCTTGCTTGTTTAATGATTCTATTT 57.120 25.926 0.00 0.00 0.00 1.40
383 384 9.142515 TGCTTGCTTGTTTAATGATTCTATTTG 57.857 29.630 0.00 0.00 0.00 2.32
384 385 9.357652 GCTTGCTTGTTTAATGATTCTATTTGA 57.642 29.630 0.00 0.00 0.00 2.69
386 387 9.859427 TTGCTTGTTTAATGATTCTATTTGAGG 57.141 29.630 0.00 0.00 0.00 3.86
387 388 9.241919 TGCTTGTTTAATGATTCTATTTGAGGA 57.758 29.630 0.00 0.00 0.00 3.71
721 722 2.858260 GCACATTATTTAGCGCGCCAAT 60.858 45.455 30.33 26.81 0.00 3.16
1290 1301 1.302192 GGACAACAACCTGCCGCTA 60.302 57.895 0.00 0.00 0.00 4.26
1371 1382 2.095364 CACCATCAGCAAGAAGAACAGC 60.095 50.000 0.00 0.00 0.00 4.40
1978 2031 6.968263 TCATCCAGATTACTCCACTTAGAG 57.032 41.667 0.00 0.00 39.91 2.43
1980 2033 7.301420 TCATCCAGATTACTCCACTTAGAGAT 58.699 38.462 0.00 0.00 37.33 2.75
1981 2034 7.786943 TCATCCAGATTACTCCACTTAGAGATT 59.213 37.037 0.00 0.00 37.33 2.40
2018 2071 9.139174 GTTTGTGAAGAAGTCAAATCAAAGAAA 57.861 29.630 0.00 0.00 38.23 2.52
2021 2074 6.419116 GTGAAGAAGTCAAATCAAAGAAAGGC 59.581 38.462 0.00 0.00 38.23 4.35
2204 2259 4.067896 TCTCTTTGAGTCAAGTCAATGGC 58.932 43.478 5.56 0.00 36.34 4.40
2397 2470 4.508124 CGCCCTAACTACAAGATTGATGAC 59.492 45.833 0.00 0.00 0.00 3.06
2444 2517 0.625849 AAGAAATCCGGTGGCCTCAT 59.374 50.000 3.32 0.00 0.00 2.90
2575 2648 8.636213 CCATCTTCAGGAGTAATTAATGCATTT 58.364 33.333 18.75 1.86 0.00 2.32
2752 2861 2.521708 GTGCCCAACCACCAAGCT 60.522 61.111 0.00 0.00 0.00 3.74
2768 2877 2.457366 AGCTAAACACTTGTCCCTCG 57.543 50.000 0.00 0.00 0.00 4.63
2789 2898 3.618997 CGAGCTAGTGTACAACCCCAAAT 60.619 47.826 0.00 0.00 0.00 2.32
2836 2947 1.135094 AGGAACCTCGCCATCATCAT 58.865 50.000 0.00 0.00 0.00 2.45
2999 3111 1.972872 ATTCATGTTCATCTCCGGCC 58.027 50.000 0.00 0.00 0.00 6.13
3073 3186 0.316204 CACCGGGAAACTACACGACT 59.684 55.000 6.32 0.00 39.16 4.18
3207 3333 1.059006 CCCTAAGGGCATCTCCAGCT 61.059 60.000 0.00 0.00 35.35 4.24
3328 3460 1.971695 CCCCCAGGCGAGTGTTTTC 60.972 63.158 0.00 0.00 0.00 2.29
3329 3461 1.971695 CCCCAGGCGAGTGTTTTCC 60.972 63.158 0.00 0.00 0.00 3.13
3330 3462 1.073199 CCCAGGCGAGTGTTTTCCT 59.927 57.895 0.00 0.00 0.00 3.36
3332 3464 1.318576 CCAGGCGAGTGTTTTCCTTT 58.681 50.000 0.00 0.00 0.00 3.11
3393 3531 6.584185 AGTTAAATTTCGGCTAAACATGGT 57.416 33.333 0.00 0.00 0.00 3.55
3553 3715 2.927856 ACCATGGTGGACTGGCGA 60.928 61.111 18.99 0.00 40.96 5.54
3785 3980 4.681978 GTCTTCACCGGCGCCAGT 62.682 66.667 28.98 20.27 0.00 4.00
4122 4360 1.794864 GTGAGCACGCTCTCGAGTA 59.205 57.895 19.17 0.00 43.12 2.59
4132 4370 3.900892 CTCGAGTATGCGGCCGGT 61.901 66.667 29.38 0.00 0.00 5.28
4478 5176 3.131478 AAGCCGGCGAAAATCGGG 61.131 61.111 23.20 0.00 45.75 5.14
4573 5271 2.225792 GGCTGGAGATGCCCTAAGT 58.774 57.895 0.00 0.00 44.32 2.24
4749 5448 4.811557 GGTGGCATTGACTAGTAGACATTC 59.188 45.833 3.59 0.00 0.00 2.67
4761 5460 4.938080 AGTAGACATTCTTCATAGGCACG 58.062 43.478 0.00 0.00 0.00 5.34
4768 5467 1.000607 TCTTCATAGGCACGCGGTATC 60.001 52.381 12.47 0.00 0.00 2.24
4773 5472 1.950973 TAGGCACGCGGTATCAGCAA 61.951 55.000 12.47 0.00 34.19 3.91
4846 5545 9.887406 GAAGATAGAGTACTCTAAATGCTGTAC 57.113 37.037 31.11 17.35 44.44 2.90
4866 5565 8.062448 GCTGTACATCTTCATCGGTAAATAAAC 58.938 37.037 0.00 0.00 0.00 2.01
4871 5570 9.530633 ACATCTTCATCGGTAAATAAACTCTAC 57.469 33.333 0.00 0.00 0.00 2.59
4878 5577 9.314321 CATCGGTAAATAAACTCTACAATCAGT 57.686 33.333 0.00 0.00 0.00 3.41
5047 5746 3.891977 AGTGACAGAACAAGTAGCTCAGA 59.108 43.478 0.00 0.00 0.00 3.27
5117 5816 9.702726 CAACCATCATTAGTTATGTTACTTTCG 57.297 33.333 0.00 0.00 35.64 3.46
5190 5889 6.995686 AGTTGTGTTGTTGGTACATGATCTTA 59.004 34.615 0.00 0.00 39.30 2.10
5192 5891 6.764379 TGTGTTGTTGGTACATGATCTTAGA 58.236 36.000 0.00 0.00 39.30 2.10
5257 5956 1.492599 TGGTGGGTCATCAGTTTGTGA 59.507 47.619 0.00 0.00 40.38 3.58
5278 5977 5.574830 GTGATGTTAGATCAGTCTGTGACAC 59.425 44.000 0.00 0.00 38.28 3.67
5322 6021 1.168714 CTCCACTTAGGTTTGCCAGC 58.831 55.000 0.00 0.00 39.02 4.85
5469 6168 3.249320 CGAAGTGGGATATGCAGTCAATG 59.751 47.826 0.00 0.00 0.00 2.82
5489 6188 6.255670 TCAATGCTCTTTACAGTATTGCGTAG 59.744 38.462 6.44 0.00 42.88 3.51
5617 6317 2.998316 ATTCCAGGTAGCAAGAGAGC 57.002 50.000 0.00 0.00 0.00 4.09
5634 6334 2.305343 AGAGCTGGCACAAAGATTCTCT 59.695 45.455 0.00 0.00 38.70 3.10
5658 6358 2.029838 AGGTATGCTAGCAGTTGCAC 57.970 50.000 23.89 14.13 45.16 4.57
5912 6613 4.287585 CCCATTCCTATAACCCGTTGGATA 59.712 45.833 0.00 0.00 34.81 2.59
5919 6620 0.616891 AACCCGTTGGATACTGGGTC 59.383 55.000 6.58 0.00 46.31 4.46
5974 6675 1.066908 GAGCGTCAGAGATTCTGGAGG 59.933 57.143 6.27 0.00 44.39 4.30
6057 6759 1.226435 AGCGCGCTCTTAGACGAAG 60.226 57.895 31.32 0.00 36.38 3.79
6088 6790 0.033366 TGGGATGGCGTCATACATCG 59.967 55.000 15.46 0.00 43.34 3.84
6116 6818 3.566332 GGAGAGGAGGGATATGCAGATCT 60.566 52.174 20.04 1.91 0.00 2.75
6317 7092 4.077108 CCCCTTAGGAACCTAACAAACAC 58.923 47.826 8.98 0.00 38.24 3.32
6318 7093 4.077108 CCCTTAGGAACCTAACAAACACC 58.923 47.826 8.98 0.00 35.06 4.16
6319 7094 4.446600 CCCTTAGGAACCTAACAAACACCA 60.447 45.833 8.98 0.00 35.06 4.17
6597 7410 2.023888 TGGGGAAAAGGAACTGGTTTCA 60.024 45.455 0.00 0.00 40.86 2.69
6598 7411 3.035363 GGGGAAAAGGAACTGGTTTCAA 58.965 45.455 0.00 0.00 40.86 2.69
6673 7486 2.057922 TCTTATGGATCCCTTGCTCCC 58.942 52.381 9.90 0.00 0.00 4.30
6884 7697 6.653020 ACCTCTCATGTCAATATTGTTAGCA 58.347 36.000 14.97 10.29 0.00 3.49
6923 7737 2.675348 GAGGGATCAAAACGAGCTCTTG 59.325 50.000 12.85 9.90 42.35 3.02
7564 8380 1.651240 CCATGCCACCGAAGCAGAAG 61.651 60.000 0.00 0.00 44.90 2.85
7948 8776 6.151985 TGTTTGAAGAAACCAAGTAAGAAGCA 59.848 34.615 0.00 0.00 40.81 3.91
8188 9019 7.013559 TCCATGTAAGGAAATAATCACTGCATG 59.986 37.037 0.00 0.00 33.93 4.06
8332 9172 2.031245 CGACAACAAACTTGCATAGCCA 60.031 45.455 0.00 0.00 0.00 4.75
8425 9475 7.986889 ACAAACAAAAATTAGCTTGGAGATGTT 59.013 29.630 0.00 0.00 0.00 2.71
8459 9510 2.341846 TTTTTCTTCGACAGGCACCT 57.658 45.000 0.00 0.00 0.00 4.00
8460 9511 3.478857 TTTTTCTTCGACAGGCACCTA 57.521 42.857 0.00 0.00 0.00 3.08
8461 9512 3.478857 TTTTCTTCGACAGGCACCTAA 57.521 42.857 0.00 0.00 0.00 2.69
8462 9513 3.695830 TTTCTTCGACAGGCACCTAAT 57.304 42.857 0.00 0.00 0.00 1.73
8473 9524 6.391227 ACAGGCACCTAATTAAATGTATGC 57.609 37.500 0.00 0.00 0.00 3.14
8555 9609 4.206244 AGCCTCCTATCACTGTATTCCT 57.794 45.455 0.00 0.00 0.00 3.36
8602 9656 2.074547 TCCGCCTTACAAGTTCGAAG 57.925 50.000 0.00 0.00 0.00 3.79
8664 9718 3.200165 ACCAAGACCTTCCAGGCTATAAC 59.800 47.826 0.00 0.00 39.63 1.89
8712 9767 2.364632 CCGGTTCCATTGCATAGAACA 58.635 47.619 19.55 0.00 41.32 3.18
8719 9774 6.389091 GTTCCATTGCATAGAACATGAAACA 58.611 36.000 15.35 0.00 39.71 2.83
8733 9788 4.704540 ACATGAAACAAAACTGGTCTGTCA 59.295 37.500 0.00 0.00 0.00 3.58
8753 9808 7.014711 TCTGTCAAGTCAAGTTACAGATCTTCT 59.985 37.037 0.00 0.00 41.09 2.85
8775 9830 7.790782 TCTGGAGTAAAATTTGCCCTAAAAT 57.209 32.000 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.757745 AGCCCGTAATCATTCAAAACG 57.242 42.857 0.00 0.00 0.00 3.60
52 53 9.744468 ATAATAAAGCCCGTAATCATTCAAAAC 57.256 29.630 0.00 0.00 0.00 2.43
55 56 9.562408 TGTATAATAAAGCCCGTAATCATTCAA 57.438 29.630 0.00 0.00 0.00 2.69
56 57 8.995220 GTGTATAATAAAGCCCGTAATCATTCA 58.005 33.333 0.00 0.00 0.00 2.57
57 58 9.216117 AGTGTATAATAAAGCCCGTAATCATTC 57.784 33.333 0.00 0.00 0.00 2.67
58 59 9.569122 AAGTGTATAATAAAGCCCGTAATCATT 57.431 29.630 0.00 0.00 0.00 2.57
59 60 9.569122 AAAGTGTATAATAAAGCCCGTAATCAT 57.431 29.630 0.00 0.00 0.00 2.45
60 61 8.967664 AAAGTGTATAATAAAGCCCGTAATCA 57.032 30.769 0.00 0.00 0.00 2.57
89 90 9.690913 GGTTAATAGGTTAGTCCCAAAAGTAAT 57.309 33.333 0.00 0.00 36.75 1.89
90 91 8.667737 TGGTTAATAGGTTAGTCCCAAAAGTAA 58.332 33.333 0.00 0.00 36.75 2.24
91 92 8.217188 TGGTTAATAGGTTAGTCCCAAAAGTA 57.783 34.615 0.00 0.00 36.75 2.24
92 93 7.017850 TCTGGTTAATAGGTTAGTCCCAAAAGT 59.982 37.037 0.00 0.00 36.75 2.66
93 94 7.399634 TCTGGTTAATAGGTTAGTCCCAAAAG 58.600 38.462 0.00 0.00 36.75 2.27
94 95 7.332433 TCTGGTTAATAGGTTAGTCCCAAAA 57.668 36.000 0.00 0.00 36.75 2.44
95 96 6.069847 CCTCTGGTTAATAGGTTAGTCCCAAA 60.070 42.308 0.00 0.00 36.75 3.28
96 97 5.427481 CCTCTGGTTAATAGGTTAGTCCCAA 59.573 44.000 0.00 0.00 36.75 4.12
97 98 4.966805 CCTCTGGTTAATAGGTTAGTCCCA 59.033 45.833 0.00 0.00 36.75 4.37
98 99 4.202336 GCCTCTGGTTAATAGGTTAGTCCC 60.202 50.000 0.00 0.00 36.75 4.46
99 100 4.202336 GGCCTCTGGTTAATAGGTTAGTCC 60.202 50.000 0.00 0.00 32.67 3.85
100 101 4.202336 GGGCCTCTGGTTAATAGGTTAGTC 60.202 50.000 0.84 0.00 32.67 2.59
101 102 3.715315 GGGCCTCTGGTTAATAGGTTAGT 59.285 47.826 0.84 0.00 32.67 2.24
102 103 3.714798 TGGGCCTCTGGTTAATAGGTTAG 59.285 47.826 4.53 0.00 32.67 2.34
103 104 3.714798 CTGGGCCTCTGGTTAATAGGTTA 59.285 47.826 4.53 0.00 32.67 2.85
104 105 2.509964 CTGGGCCTCTGGTTAATAGGTT 59.490 50.000 4.53 0.00 32.67 3.50
105 106 2.127708 CTGGGCCTCTGGTTAATAGGT 58.872 52.381 4.53 0.00 32.67 3.08
106 107 1.202818 GCTGGGCCTCTGGTTAATAGG 60.203 57.143 4.53 0.00 0.00 2.57
107 108 1.771255 AGCTGGGCCTCTGGTTAATAG 59.229 52.381 4.53 0.00 0.00 1.73
108 109 1.768870 GAGCTGGGCCTCTGGTTAATA 59.231 52.381 4.53 0.00 0.00 0.98
109 110 0.548510 GAGCTGGGCCTCTGGTTAAT 59.451 55.000 4.53 0.00 0.00 1.40
110 111 0.840288 TGAGCTGGGCCTCTGGTTAA 60.840 55.000 4.53 0.00 33.02 2.01
111 112 0.621571 ATGAGCTGGGCCTCTGGTTA 60.622 55.000 4.53 0.00 33.02 2.85
112 113 0.621571 TATGAGCTGGGCCTCTGGTT 60.622 55.000 4.53 0.00 33.02 3.67
113 114 0.401105 ATATGAGCTGGGCCTCTGGT 60.401 55.000 4.53 2.33 33.02 4.00
114 115 0.769873 AATATGAGCTGGGCCTCTGG 59.230 55.000 4.53 0.00 33.02 3.86
115 116 1.142465 ACAATATGAGCTGGGCCTCTG 59.858 52.381 4.53 0.00 33.02 3.35
116 117 1.516110 ACAATATGAGCTGGGCCTCT 58.484 50.000 4.53 1.06 33.02 3.69
117 118 1.952296 CAACAATATGAGCTGGGCCTC 59.048 52.381 4.53 0.00 0.00 4.70
118 119 1.285962 ACAACAATATGAGCTGGGCCT 59.714 47.619 4.53 0.00 0.00 5.19
119 120 1.767759 ACAACAATATGAGCTGGGCC 58.232 50.000 0.00 0.00 0.00 5.80
120 121 3.874392 AAACAACAATATGAGCTGGGC 57.126 42.857 0.00 0.00 0.00 5.36
121 122 6.256321 GCAATAAAACAACAATATGAGCTGGG 59.744 38.462 0.00 0.00 0.00 4.45
122 123 6.256321 GGCAATAAAACAACAATATGAGCTGG 59.744 38.462 0.00 0.00 0.00 4.85
123 124 7.009815 CAGGCAATAAAACAACAATATGAGCTG 59.990 37.037 0.00 0.00 0.00 4.24
124 125 7.037438 CAGGCAATAAAACAACAATATGAGCT 58.963 34.615 0.00 0.00 0.00 4.09
125 126 6.813152 ACAGGCAATAAAACAACAATATGAGC 59.187 34.615 0.00 0.00 0.00 4.26
126 127 8.761575 AACAGGCAATAAAACAACAATATGAG 57.238 30.769 0.00 0.00 0.00 2.90
127 128 9.202273 GAAACAGGCAATAAAACAACAATATGA 57.798 29.630 0.00 0.00 0.00 2.15
128 129 8.986847 TGAAACAGGCAATAAAACAACAATATG 58.013 29.630 0.00 0.00 0.00 1.78
129 130 9.206870 CTGAAACAGGCAATAAAACAACAATAT 57.793 29.630 0.00 0.00 0.00 1.28
130 131 8.200792 ACTGAAACAGGCAATAAAACAACAATA 58.799 29.630 0.00 0.00 35.51 1.90
131 132 7.047271 ACTGAAACAGGCAATAAAACAACAAT 58.953 30.769 0.00 0.00 35.51 2.71
132 133 6.402222 ACTGAAACAGGCAATAAAACAACAA 58.598 32.000 0.00 0.00 35.51 2.83
133 134 5.971763 ACTGAAACAGGCAATAAAACAACA 58.028 33.333 0.00 0.00 35.51 3.33
134 135 8.587952 AATACTGAAACAGGCAATAAAACAAC 57.412 30.769 0.00 0.00 35.51 3.32
135 136 9.255304 GAAATACTGAAACAGGCAATAAAACAA 57.745 29.630 0.00 0.00 35.51 2.83
136 137 8.417106 TGAAATACTGAAACAGGCAATAAAACA 58.583 29.630 0.00 0.00 35.51 2.83
137 138 8.810652 TGAAATACTGAAACAGGCAATAAAAC 57.189 30.769 0.00 0.00 35.51 2.43
138 139 9.823647 TTTGAAATACTGAAACAGGCAATAAAA 57.176 25.926 0.00 0.00 35.51 1.52
139 140 9.474920 CTTTGAAATACTGAAACAGGCAATAAA 57.525 29.630 0.00 0.00 35.51 1.40
140 141 8.855110 TCTTTGAAATACTGAAACAGGCAATAA 58.145 29.630 0.00 0.00 35.51 1.40
141 142 8.402798 TCTTTGAAATACTGAAACAGGCAATA 57.597 30.769 0.00 0.00 35.51 1.90
142 143 7.288810 TCTTTGAAATACTGAAACAGGCAAT 57.711 32.000 0.00 0.00 35.51 3.56
143 144 6.707440 TCTTTGAAATACTGAAACAGGCAA 57.293 33.333 0.00 0.00 35.51 4.52
144 145 6.707440 TTCTTTGAAATACTGAAACAGGCA 57.293 33.333 0.00 0.00 35.51 4.75
145 146 7.169813 CCTTTTCTTTGAAATACTGAAACAGGC 59.830 37.037 0.00 0.00 35.51 4.85
146 147 8.413229 TCCTTTTCTTTGAAATACTGAAACAGG 58.587 33.333 0.00 0.00 35.51 4.00
147 148 9.801873 TTCCTTTTCTTTGAAATACTGAAACAG 57.198 29.630 0.00 0.00 37.52 3.16
157 158 9.423061 CCGTTTGATATTCCTTTTCTTTGAAAT 57.577 29.630 0.00 0.00 0.00 2.17
158 159 8.634444 TCCGTTTGATATTCCTTTTCTTTGAAA 58.366 29.630 0.00 0.00 0.00 2.69
159 160 8.172352 TCCGTTTGATATTCCTTTTCTTTGAA 57.828 30.769 0.00 0.00 0.00 2.69
160 161 7.447238 ACTCCGTTTGATATTCCTTTTCTTTGA 59.553 33.333 0.00 0.00 0.00 2.69
161 162 7.593825 ACTCCGTTTGATATTCCTTTTCTTTG 58.406 34.615 0.00 0.00 0.00 2.77
162 163 7.094334 GGACTCCGTTTGATATTCCTTTTCTTT 60.094 37.037 0.00 0.00 0.00 2.52
163 164 6.374613 GGACTCCGTTTGATATTCCTTTTCTT 59.625 38.462 0.00 0.00 0.00 2.52
164 165 5.880887 GGACTCCGTTTGATATTCCTTTTCT 59.119 40.000 0.00 0.00 0.00 2.52
165 166 5.646360 TGGACTCCGTTTGATATTCCTTTTC 59.354 40.000 0.00 0.00 0.00 2.29
166 167 5.566469 TGGACTCCGTTTGATATTCCTTTT 58.434 37.500 0.00 0.00 0.00 2.27
167 168 5.174037 TGGACTCCGTTTGATATTCCTTT 57.826 39.130 0.00 0.00 0.00 3.11
168 169 4.837093 TGGACTCCGTTTGATATTCCTT 57.163 40.909 0.00 0.00 0.00 3.36
169 170 4.837093 TTGGACTCCGTTTGATATTCCT 57.163 40.909 0.00 0.00 0.00 3.36
170 171 4.201783 CGTTTGGACTCCGTTTGATATTCC 60.202 45.833 0.00 0.00 0.00 3.01
171 172 4.201783 CCGTTTGGACTCCGTTTGATATTC 60.202 45.833 0.00 0.00 37.49 1.75
172 173 3.687698 CCGTTTGGACTCCGTTTGATATT 59.312 43.478 0.00 0.00 37.49 1.28
173 174 3.055675 TCCGTTTGGACTCCGTTTGATAT 60.056 43.478 0.00 0.00 40.17 1.63
174 175 2.299582 TCCGTTTGGACTCCGTTTGATA 59.700 45.455 0.00 0.00 40.17 2.15
175 176 1.071071 TCCGTTTGGACTCCGTTTGAT 59.929 47.619 0.00 0.00 40.17 2.57
176 177 0.464870 TCCGTTTGGACTCCGTTTGA 59.535 50.000 0.00 0.00 40.17 2.69
177 178 1.301423 TTCCGTTTGGACTCCGTTTG 58.699 50.000 0.00 0.00 46.45 2.93
178 179 1.877443 CATTCCGTTTGGACTCCGTTT 59.123 47.619 0.00 0.00 46.45 3.60
179 180 1.071071 TCATTCCGTTTGGACTCCGTT 59.929 47.619 0.00 0.00 46.45 4.44
180 181 0.682852 TCATTCCGTTTGGACTCCGT 59.317 50.000 0.00 0.00 46.45 4.69
181 182 1.803334 TTCATTCCGTTTGGACTCCG 58.197 50.000 0.00 0.00 46.45 4.63
182 183 2.228103 GGTTTCATTCCGTTTGGACTCC 59.772 50.000 0.00 0.00 46.45 3.85
183 184 3.146847 AGGTTTCATTCCGTTTGGACTC 58.853 45.455 0.00 0.00 46.45 3.36
184 185 3.223674 AGGTTTCATTCCGTTTGGACT 57.776 42.857 0.00 0.00 46.45 3.85
185 186 3.608474 CGAAGGTTTCATTCCGTTTGGAC 60.608 47.826 0.00 0.00 46.45 4.02
186 187 2.550606 CGAAGGTTTCATTCCGTTTGGA 59.449 45.455 0.00 0.00 44.61 3.53
187 188 2.928694 CGAAGGTTTCATTCCGTTTGG 58.071 47.619 0.00 0.00 0.00 3.28
203 204 1.135689 CCAAAAATCACGCTCCCGAAG 60.136 52.381 0.00 0.00 38.29 3.79
204 205 0.878416 CCAAAAATCACGCTCCCGAA 59.122 50.000 0.00 0.00 38.29 4.30
205 206 0.035598 TCCAAAAATCACGCTCCCGA 59.964 50.000 0.00 0.00 38.29 5.14
206 207 0.878416 TTCCAAAAATCACGCTCCCG 59.122 50.000 0.00 0.00 41.14 5.14
207 208 2.352715 CCTTTCCAAAAATCACGCTCCC 60.353 50.000 0.00 0.00 0.00 4.30
208 209 2.556622 TCCTTTCCAAAAATCACGCTCC 59.443 45.455 0.00 0.00 0.00 4.70
209 210 3.915437 TCCTTTCCAAAAATCACGCTC 57.085 42.857 0.00 0.00 0.00 5.03
210 211 5.652014 TCATATCCTTTCCAAAAATCACGCT 59.348 36.000 0.00 0.00 0.00 5.07
211 212 5.890334 TCATATCCTTTCCAAAAATCACGC 58.110 37.500 0.00 0.00 0.00 5.34
212 213 7.141363 GGATCATATCCTTTCCAAAAATCACG 58.859 38.462 0.00 0.00 46.19 4.35
227 228 3.574396 TCCAAGTCTGTCGGATCATATCC 59.426 47.826 0.00 0.00 46.22 2.59
228 229 4.279671 ACTCCAAGTCTGTCGGATCATATC 59.720 45.833 0.00 0.00 0.00 1.63
229 230 4.219115 ACTCCAAGTCTGTCGGATCATAT 58.781 43.478 0.00 0.00 0.00 1.78
230 231 3.632333 ACTCCAAGTCTGTCGGATCATA 58.368 45.455 0.00 0.00 0.00 2.15
231 232 2.461695 ACTCCAAGTCTGTCGGATCAT 58.538 47.619 0.00 0.00 0.00 2.45
232 233 1.924731 ACTCCAAGTCTGTCGGATCA 58.075 50.000 0.00 0.00 0.00 2.92
233 234 2.231478 TGAACTCCAAGTCTGTCGGATC 59.769 50.000 0.00 0.00 0.00 3.36
234 235 2.248248 TGAACTCCAAGTCTGTCGGAT 58.752 47.619 0.00 0.00 0.00 4.18
235 236 1.699730 TGAACTCCAAGTCTGTCGGA 58.300 50.000 0.00 0.00 0.00 4.55
236 237 2.408050 CTTGAACTCCAAGTCTGTCGG 58.592 52.381 0.00 0.00 45.52 4.79
245 246 2.106511 CCTTCCCTGACTTGAACTCCAA 59.893 50.000 0.00 0.00 0.00 3.53
246 247 1.699634 CCTTCCCTGACTTGAACTCCA 59.300 52.381 0.00 0.00 0.00 3.86
247 248 1.611936 GCCTTCCCTGACTTGAACTCC 60.612 57.143 0.00 0.00 0.00 3.85
248 249 1.349357 AGCCTTCCCTGACTTGAACTC 59.651 52.381 0.00 0.00 0.00 3.01
249 250 1.349357 GAGCCTTCCCTGACTTGAACT 59.651 52.381 0.00 0.00 0.00 3.01
250 251 1.814793 GAGCCTTCCCTGACTTGAAC 58.185 55.000 0.00 0.00 0.00 3.18
251 252 0.321671 CGAGCCTTCCCTGACTTGAA 59.678 55.000 0.00 0.00 0.00 2.69
252 253 0.541998 TCGAGCCTTCCCTGACTTGA 60.542 55.000 0.00 0.00 0.00 3.02
253 254 0.108424 CTCGAGCCTTCCCTGACTTG 60.108 60.000 0.00 0.00 0.00 3.16
254 255 1.261238 CCTCGAGCCTTCCCTGACTT 61.261 60.000 6.99 0.00 0.00 3.01
255 256 1.684049 CCTCGAGCCTTCCCTGACT 60.684 63.158 6.99 0.00 0.00 3.41
256 257 1.258445 TTCCTCGAGCCTTCCCTGAC 61.258 60.000 6.99 0.00 0.00 3.51
257 258 0.972983 CTTCCTCGAGCCTTCCCTGA 60.973 60.000 6.99 0.00 0.00 3.86
258 259 1.519719 CTTCCTCGAGCCTTCCCTG 59.480 63.158 6.99 0.00 0.00 4.45
259 260 2.363172 GCTTCCTCGAGCCTTCCCT 61.363 63.158 6.99 0.00 36.66 4.20
260 261 1.043673 TAGCTTCCTCGAGCCTTCCC 61.044 60.000 6.99 0.00 43.74 3.97
261 262 0.387565 CTAGCTTCCTCGAGCCTTCC 59.612 60.000 6.99 0.00 43.74 3.46
262 263 0.387565 CCTAGCTTCCTCGAGCCTTC 59.612 60.000 6.99 0.00 43.74 3.46
263 264 0.033011 TCCTAGCTTCCTCGAGCCTT 60.033 55.000 6.99 0.00 43.74 4.35
264 265 0.467290 CTCCTAGCTTCCTCGAGCCT 60.467 60.000 6.99 2.77 43.74 4.58
265 266 0.753848 ACTCCTAGCTTCCTCGAGCC 60.754 60.000 6.99 0.00 43.74 4.70
266 267 1.107945 AACTCCTAGCTTCCTCGAGC 58.892 55.000 6.99 0.00 43.02 5.03
267 268 2.882137 CCTAACTCCTAGCTTCCTCGAG 59.118 54.545 5.13 5.13 0.00 4.04
268 269 2.423088 CCCTAACTCCTAGCTTCCTCGA 60.423 54.545 0.00 0.00 0.00 4.04
269 270 1.957877 CCCTAACTCCTAGCTTCCTCG 59.042 57.143 0.00 0.00 0.00 4.63
270 271 3.315880 TCCCTAACTCCTAGCTTCCTC 57.684 52.381 0.00 0.00 0.00 3.71
271 272 3.013073 ACTTCCCTAACTCCTAGCTTCCT 59.987 47.826 0.00 0.00 0.00 3.36
272 273 3.376636 ACTTCCCTAACTCCTAGCTTCC 58.623 50.000 0.00 0.00 0.00 3.46
273 274 5.834204 TCATACTTCCCTAACTCCTAGCTTC 59.166 44.000 0.00 0.00 0.00 3.86
274 275 5.778542 TCATACTTCCCTAACTCCTAGCTT 58.221 41.667 0.00 0.00 0.00 3.74
275 276 5.405063 TCATACTTCCCTAACTCCTAGCT 57.595 43.478 0.00 0.00 0.00 3.32
276 277 5.775701 TCATCATACTTCCCTAACTCCTAGC 59.224 44.000 0.00 0.00 0.00 3.42
277 278 7.841282 TTCATCATACTTCCCTAACTCCTAG 57.159 40.000 0.00 0.00 0.00 3.02
278 279 8.235230 AGATTCATCATACTTCCCTAACTCCTA 58.765 37.037 0.00 0.00 0.00 2.94
279 280 7.079048 AGATTCATCATACTTCCCTAACTCCT 58.921 38.462 0.00 0.00 0.00 3.69
280 281 7.309770 AGATTCATCATACTTCCCTAACTCC 57.690 40.000 0.00 0.00 0.00 3.85
281 282 7.172361 GCAAGATTCATCATACTTCCCTAACTC 59.828 40.741 0.00 0.00 0.00 3.01
282 283 6.995091 GCAAGATTCATCATACTTCCCTAACT 59.005 38.462 0.00 0.00 0.00 2.24
283 284 6.767902 TGCAAGATTCATCATACTTCCCTAAC 59.232 38.462 0.00 0.00 0.00 2.34
284 285 6.899089 TGCAAGATTCATCATACTTCCCTAA 58.101 36.000 0.00 0.00 0.00 2.69
285 286 6.499106 TGCAAGATTCATCATACTTCCCTA 57.501 37.500 0.00 0.00 0.00 3.53
286 287 5.378230 TGCAAGATTCATCATACTTCCCT 57.622 39.130 0.00 0.00 0.00 4.20
287 288 6.489361 AGAATGCAAGATTCATCATACTTCCC 59.511 38.462 0.00 0.00 0.00 3.97
288 289 7.507733 AGAATGCAAGATTCATCATACTTCC 57.492 36.000 0.00 0.00 0.00 3.46
291 292 9.399797 TGTAAAGAATGCAAGATTCATCATACT 57.600 29.630 0.00 0.00 0.00 2.12
294 295 9.362539 GTTTGTAAAGAATGCAAGATTCATCAT 57.637 29.630 0.00 0.00 34.97 2.45
295 296 8.579006 AGTTTGTAAAGAATGCAAGATTCATCA 58.421 29.630 0.00 0.00 34.97 3.07
296 297 8.976986 AGTTTGTAAAGAATGCAAGATTCATC 57.023 30.769 0.00 0.00 34.97 2.92
302 303 9.502091 ACAGTATAGTTTGTAAAGAATGCAAGA 57.498 29.630 0.00 0.00 34.97 3.02
308 309 9.908152 GCCAAAACAGTATAGTTTGTAAAGAAT 57.092 29.630 0.00 0.00 40.60 2.40
309 310 8.904834 TGCCAAAACAGTATAGTTTGTAAAGAA 58.095 29.630 0.00 0.00 40.60 2.52
310 311 8.453238 TGCCAAAACAGTATAGTTTGTAAAGA 57.547 30.769 0.00 0.00 40.60 2.52
311 312 8.564574 TCTGCCAAAACAGTATAGTTTGTAAAG 58.435 33.333 0.00 0.00 40.60 1.85
312 313 8.453238 TCTGCCAAAACAGTATAGTTTGTAAA 57.547 30.769 0.00 0.00 40.60 2.01
313 314 8.630054 ATCTGCCAAAACAGTATAGTTTGTAA 57.370 30.769 0.00 0.00 40.60 2.41
314 315 8.511321 CAATCTGCCAAAACAGTATAGTTTGTA 58.489 33.333 0.00 0.00 40.60 2.41
315 316 7.370383 CAATCTGCCAAAACAGTATAGTTTGT 58.630 34.615 0.00 0.00 40.60 2.83
316 317 6.308766 GCAATCTGCCAAAACAGTATAGTTTG 59.691 38.462 0.00 0.00 38.36 2.93
317 318 6.209391 AGCAATCTGCCAAAACAGTATAGTTT 59.791 34.615 0.00 0.00 46.52 2.66
318 319 5.711976 AGCAATCTGCCAAAACAGTATAGTT 59.288 36.000 0.00 0.00 46.52 2.24
319 320 5.124457 CAGCAATCTGCCAAAACAGTATAGT 59.876 40.000 0.00 0.00 46.52 2.12
320 321 5.124457 ACAGCAATCTGCCAAAACAGTATAG 59.876 40.000 0.00 0.00 46.52 1.31
321 322 5.009631 ACAGCAATCTGCCAAAACAGTATA 58.990 37.500 0.00 0.00 46.52 1.47
322 323 3.828451 ACAGCAATCTGCCAAAACAGTAT 59.172 39.130 0.00 0.00 46.52 2.12
323 324 3.221771 ACAGCAATCTGCCAAAACAGTA 58.778 40.909 0.00 0.00 46.52 2.74
324 325 2.034124 ACAGCAATCTGCCAAAACAGT 58.966 42.857 0.00 0.00 46.52 3.55
325 326 2.806608 ACAGCAATCTGCCAAAACAG 57.193 45.000 0.00 0.00 46.52 3.16
326 327 4.039004 ACATAACAGCAATCTGCCAAAACA 59.961 37.500 0.00 0.00 46.52 2.83
327 328 4.559153 ACATAACAGCAATCTGCCAAAAC 58.441 39.130 0.00 0.00 46.52 2.43
328 329 4.870123 ACATAACAGCAATCTGCCAAAA 57.130 36.364 0.00 0.00 46.52 2.44
329 330 4.870123 AACATAACAGCAATCTGCCAAA 57.130 36.364 0.00 0.00 46.52 3.28
330 331 4.558178 CAAACATAACAGCAATCTGCCAA 58.442 39.130 0.00 0.00 46.52 4.52
331 332 3.614630 GCAAACATAACAGCAATCTGCCA 60.615 43.478 0.00 0.00 46.52 4.92
332 333 2.925563 GCAAACATAACAGCAATCTGCC 59.074 45.455 0.00 0.00 46.52 4.85
333 334 3.577667 TGCAAACATAACAGCAATCTGC 58.422 40.909 0.00 0.00 44.10 4.26
334 335 6.074516 GCATATGCAAACATAACAGCAATCTG 60.075 38.462 22.84 0.00 41.99 2.90
335 336 5.981315 GCATATGCAAACATAACAGCAATCT 59.019 36.000 22.84 0.00 41.99 2.40
336 337 5.981315 AGCATATGCAAACATAACAGCAATC 59.019 36.000 28.62 0.00 41.99 2.67
337 338 5.909477 AGCATATGCAAACATAACAGCAAT 58.091 33.333 28.62 0.00 41.99 3.56
338 339 5.327616 AGCATATGCAAACATAACAGCAA 57.672 34.783 28.62 0.00 41.99 3.91
339 340 4.987408 AGCATATGCAAACATAACAGCA 57.013 36.364 28.62 0.00 41.99 4.41
340 341 4.026310 GCAAGCATATGCAAACATAACAGC 60.026 41.667 28.62 12.61 45.70 4.40
341 342 5.630896 GCAAGCATATGCAAACATAACAG 57.369 39.130 28.62 7.31 45.70 3.16
352 353 7.437267 AGAATCATTAAACAAGCAAGCATATGC 59.563 33.333 20.36 20.36 46.78 3.14
353 354 8.867112 AGAATCATTAAACAAGCAAGCATATG 57.133 30.769 0.00 0.00 0.00 1.78
356 357 9.880157 AAATAGAATCATTAAACAAGCAAGCAT 57.120 25.926 0.00 0.00 0.00 3.79
357 358 9.142515 CAAATAGAATCATTAAACAAGCAAGCA 57.857 29.630 0.00 0.00 0.00 3.91
358 359 9.357652 TCAAATAGAATCATTAAACAAGCAAGC 57.642 29.630 0.00 0.00 0.00 4.01
360 361 9.859427 CCTCAAATAGAATCATTAAACAAGCAA 57.141 29.630 0.00 0.00 0.00 3.91
361 362 9.241919 TCCTCAAATAGAATCATTAAACAAGCA 57.758 29.630 0.00 0.00 0.00 3.91
398 399 9.712305 GTACTGCCTTATGAAGTTATGATATGT 57.288 33.333 0.00 0.00 0.00 2.29
399 400 9.155975 GGTACTGCCTTATGAAGTTATGATATG 57.844 37.037 0.00 0.00 0.00 1.78
400 401 8.880244 TGGTACTGCCTTATGAAGTTATGATAT 58.120 33.333 0.00 0.00 38.35 1.63
401 402 8.257602 TGGTACTGCCTTATGAAGTTATGATA 57.742 34.615 0.00 0.00 38.35 2.15
721 722 6.808321 AGCATCCTCACTAAATTACTACCA 57.192 37.500 0.00 0.00 0.00 3.25
1712 1765 2.632377 ACTCACCGCAATCTATTGGTG 58.368 47.619 3.89 3.89 38.21 4.17
1938 1991 1.909700 TGAAAAGCTGCTAAGTGGGG 58.090 50.000 0.90 0.00 0.00 4.96
2018 2071 3.064324 GGCTGCGATGTTTGGCCT 61.064 61.111 3.32 0.00 39.68 5.19
2021 2074 3.055719 ACCGGCTGCGATGTTTGG 61.056 61.111 0.00 0.00 0.00 3.28
2204 2259 5.924475 AACACCGACTCTTAAATTGTGAG 57.076 39.130 0.00 0.00 0.00 3.51
2263 2318 2.359848 GGCCGCGGTAATAATCCTTTTT 59.640 45.455 28.70 0.00 0.00 1.94
2264 2319 1.951602 GGCCGCGGTAATAATCCTTTT 59.048 47.619 28.70 0.00 0.00 2.27
2752 2861 1.968493 AGCTCGAGGGACAAGTGTTTA 59.032 47.619 15.58 0.00 0.00 2.01
2768 2877 3.412237 TTTGGGGTTGTACACTAGCTC 57.588 47.619 0.00 0.00 0.00 4.09
2814 2925 1.913951 ATGATGGCGAGGTTCCTGCA 61.914 55.000 0.00 0.00 0.00 4.41
2836 2947 7.074653 ACCCGAGATTTAGGCTTTCAATATA 57.925 36.000 0.00 0.00 0.00 0.86
2877 2988 0.323629 TGGGACGATCTGTGTTTCCC 59.676 55.000 0.00 0.00 45.59 3.97
2999 3111 2.005960 GAGGTCGATCTGGTGGTCCG 62.006 65.000 0.91 0.00 36.30 4.79
3473 3623 4.471726 GACGACGACGATGGCGGT 62.472 66.667 15.32 0.00 43.17 5.68
3785 3980 3.379445 GTGAAGACGGAGCCGGGA 61.379 66.667 14.07 0.00 44.69 5.14
4114 4352 3.592814 CCGGCCGCATACTCGAGA 61.593 66.667 22.85 2.92 0.00 4.04
4573 5271 2.282180 GGCCTTCCTTTGCCGTGA 60.282 61.111 0.00 0.00 38.00 4.35
4598 5296 0.034059 CCAGACACGGGATGATAGCC 59.966 60.000 0.00 0.00 0.00 3.93
4601 5299 1.969733 AAGCCCAGACACGGGATGATA 60.970 52.381 0.00 0.00 46.85 2.15
4689 5387 1.010795 CCTCCCAATCCCCTCCTTTT 58.989 55.000 0.00 0.00 0.00 2.27
4692 5390 2.272170 TCCCTCCCAATCCCCTCCT 61.272 63.158 0.00 0.00 0.00 3.69
4723 5422 2.688446 TCTACTAGTCAATGCCACCGAG 59.312 50.000 0.00 0.00 0.00 4.63
4726 5425 3.887621 TGTCTACTAGTCAATGCCACC 57.112 47.619 0.00 0.00 0.00 4.61
4749 5448 1.269569 TGATACCGCGTGCCTATGAAG 60.270 52.381 4.92 0.00 0.00 3.02
4761 5460 0.886490 CCTCCCATTGCTGATACCGC 60.886 60.000 0.00 0.00 0.00 5.68
4846 5545 9.529325 TGTAGAGTTTATTTACCGATGAAGATG 57.471 33.333 0.00 0.00 0.00 2.90
4871 5570 1.825090 TGGCCAAGTGCTACTGATTG 58.175 50.000 0.61 0.00 40.92 2.67
4878 5577 1.142870 ACTTCAAGTGGCCAAGTGCTA 59.857 47.619 7.24 0.00 40.92 3.49
5047 5746 5.897250 AGTTTTTGGTTCCCATCAAACTAGT 59.103 36.000 14.75 0.00 41.52 2.57
5064 5763 7.250569 TCAGAAAAGAAGCACACTAGTTTTTG 58.749 34.615 0.00 0.00 0.00 2.44
5159 5858 4.519350 TGTACCAACAACACAACTTGTCAA 59.481 37.500 0.00 0.00 37.51 3.18
5160 5859 4.072839 TGTACCAACAACACAACTTGTCA 58.927 39.130 0.00 0.00 37.51 3.58
5225 5924 0.977395 ACCCACCAAGACACTAGAGC 59.023 55.000 0.00 0.00 0.00 4.09
5257 5956 5.991933 AGTGTCACAGACTGATCTAACAT 57.008 39.130 10.08 0.00 32.25 2.71
5278 5977 9.717942 AGTATAGCTCTGGCAATCTTATTTTAG 57.282 33.333 0.00 0.00 41.70 1.85
5313 6012 0.455633 CATTCTGAGCGCTGGCAAAC 60.456 55.000 18.48 0.00 43.41 2.93
5443 6142 4.081365 TGACTGCATATCCCACTTCGTTTA 60.081 41.667 0.00 0.00 0.00 2.01
5469 6168 5.575606 TGTTCTACGCAATACTGTAAAGAGC 59.424 40.000 0.00 0.00 0.00 4.09
5634 6334 5.758296 GTGCAACTGCTAGCATACCTATTAA 59.242 40.000 19.72 0.00 43.44 1.40
5755 6455 6.103997 TCCAGTCGAATTATACAGTCAAACC 58.896 40.000 0.00 0.00 0.00 3.27
5764 6464 9.095065 AGTGTATTTGTTCCAGTCGAATTATAC 57.905 33.333 0.00 0.00 31.67 1.47
5841 6541 4.509970 GCGGCAAAAGTAGGATTTGTTTTT 59.490 37.500 0.00 0.00 39.42 1.94
5846 6546 1.818674 AGGCGGCAAAAGTAGGATTTG 59.181 47.619 13.08 0.00 40.04 2.32
5912 6613 1.534235 AGGAGCTTCACGACCCAGT 60.534 57.895 0.00 0.00 0.00 4.00
5919 6620 1.699656 CCGCAATGAGGAGCTTCACG 61.700 60.000 0.00 0.00 0.00 4.35
5974 6675 3.955771 TTTCAAGGCTAACAACACGTC 57.044 42.857 0.00 0.00 0.00 4.34
6057 6759 1.751927 CATCCCAAGGCCACTGCTC 60.752 63.158 5.01 0.00 37.74 4.26
6088 6790 0.105453 TATCCCTCCTCTCCTGCCAC 60.105 60.000 0.00 0.00 0.00 5.01
6116 6818 2.388735 CACTGGGAGCTATACCACTCA 58.611 52.381 0.41 0.00 32.87 3.41
6206 6913 2.677524 GGCTGCTCCACCATTGCA 60.678 61.111 0.00 0.00 35.30 4.08
6311 7086 2.538449 GACAGTCAGTACGTGGTGTTTG 59.462 50.000 0.00 1.69 0.00 2.93
6312 7087 2.429610 AGACAGTCAGTACGTGGTGTTT 59.570 45.455 2.66 0.00 0.00 2.83
6314 7089 1.337071 CAGACAGTCAGTACGTGGTGT 59.663 52.381 2.66 0.00 0.00 4.16
6317 7092 0.959553 ACCAGACAGTCAGTACGTGG 59.040 55.000 2.66 3.01 0.00 4.94
6318 7093 3.072211 TCTACCAGACAGTCAGTACGTG 58.928 50.000 2.66 0.00 0.00 4.49
6319 7094 3.072944 GTCTACCAGACAGTCAGTACGT 58.927 50.000 2.66 0.00 44.45 3.57
6442 7237 9.521503 TTTAGATCTCTAAGAACATCGAATGTG 57.478 33.333 0.00 0.00 39.88 3.21
6576 7389 2.023888 TGAAACCAGTTCCTTTTCCCCA 60.024 45.455 0.00 0.00 35.12 4.96
6597 7410 4.997395 TGCTGCTATTCTTTTTCGAGAGTT 59.003 37.500 0.00 0.00 0.00 3.01
6598 7411 4.390297 GTGCTGCTATTCTTTTTCGAGAGT 59.610 41.667 0.00 0.00 0.00 3.24
6884 7697 4.657969 TCCCTCCAAACAAAATCCAAACAT 59.342 37.500 0.00 0.00 0.00 2.71
6923 7737 7.307989 GGAACCATTGCACATGTACTCATATAC 60.308 40.741 0.00 0.00 32.47 1.47
7524 8340 3.688673 GGCCATATCATCTAAGCTTCTGC 59.311 47.826 0.00 0.00 40.05 4.26
7948 8776 7.691993 TGGCCCTTCTCTATAATCTTAAAGT 57.308 36.000 0.00 0.00 0.00 2.66
8188 9019 6.936968 AGTCAATATAACCCCCATCTAGTC 57.063 41.667 0.00 0.00 0.00 2.59
8230 9069 1.351017 CTTCCCAACTACCAGCCTGAA 59.649 52.381 0.00 0.00 0.00 3.02
8231 9070 0.984230 CTTCCCAACTACCAGCCTGA 59.016 55.000 0.00 0.00 0.00 3.86
8344 9184 2.546368 GTGACTGTTATCAACAACGGCA 59.454 45.455 0.00 0.00 41.61 5.69
8345 9185 2.546368 TGTGACTGTTATCAACAACGGC 59.454 45.455 0.00 0.00 41.61 5.68
8473 9524 5.234752 TGGTATGCGCTAGTACAAATATGG 58.765 41.667 9.73 0.00 0.00 2.74
8530 9581 2.145397 ACAGTGATAGGAGGCTTCGA 57.855 50.000 0.00 0.00 0.00 3.71
8555 9609 0.883153 TTCGTGCGCTAGTACTTCCA 59.117 50.000 9.73 0.00 0.00 3.53
8602 9656 7.667219 TGGCATAAGATCCAATCCTTTTATCTC 59.333 37.037 0.00 0.00 0.00 2.75
8712 9767 5.418840 ACTTGACAGACCAGTTTTGTTTCAT 59.581 36.000 0.00 0.00 0.00 2.57
8719 9774 4.589908 ACTTGACTTGACAGACCAGTTTT 58.410 39.130 0.00 0.00 0.00 2.43
8733 9788 6.268847 ACTCCAGAAGATCTGTAACTTGACTT 59.731 38.462 0.00 0.00 42.80 3.01
8753 9808 7.453126 TGAGATTTTAGGGCAAATTTTACTCCA 59.547 33.333 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.