Multiple sequence alignment - TraesCS3B01G057800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G057800 chr3B 100.000 2882 0 0 1 2882 30134043 30136924 0.000000e+00 5323.0
1 TraesCS3B01G057800 chr3B 93.778 1575 84 7 314 1876 29687122 29688694 0.000000e+00 2353.0
2 TraesCS3B01G057800 chr3B 89.164 323 10 6 1 323 29686804 29687101 2.100000e-101 379.0
3 TraesCS3B01G057800 chr3B 86.713 286 31 3 1873 2151 452338462 452338177 7.750000e-81 311.0
4 TraesCS3B01G057800 chr3B 94.400 125 7 0 1 125 30384481 30384357 2.930000e-45 193.0
5 TraesCS3B01G057800 chr3A 87.360 1068 83 25 824 1876 26168143 26167113 0.000000e+00 1177.0
6 TraesCS3B01G057800 chr3A 88.165 583 39 14 185 742 26172407 26171830 0.000000e+00 667.0
7 TraesCS3B01G057800 chr3A 83.422 567 63 16 520 1066 26191954 26191399 5.550000e-137 497.0
8 TraesCS3B01G057800 chr3A 92.188 320 23 1 820 1137 26171833 26171514 4.380000e-123 451.0
9 TraesCS3B01G057800 chr3A 91.150 226 15 1 1 226 26169075 26168855 4.670000e-78 302.0
10 TraesCS3B01G057800 chr3A 95.597 159 7 0 351 509 26168511 26168353 3.690000e-64 255.0
11 TraesCS3B01G057800 chr3A 88.732 213 12 5 536 740 26168354 26168146 1.710000e-62 250.0
12 TraesCS3B01G057800 chr6D 89.359 733 70 5 2151 2882 408628359 408627634 0.000000e+00 915.0
13 TraesCS3B01G057800 chr4B 88.995 736 69 9 2151 2882 130725046 130725773 0.000000e+00 900.0
14 TraesCS3B01G057800 chr4B 76.119 201 37 7 325 515 471312097 471312296 8.500000e-16 95.3
15 TraesCS3B01G057800 chr7B 88.965 734 68 7 2151 2882 185077040 185077762 0.000000e+00 894.0
16 TraesCS3B01G057800 chr7B 88.299 735 79 5 2151 2882 65478594 65479324 0.000000e+00 874.0
17 TraesCS3B01G057800 chr7B 88.929 280 25 2 1877 2150 727950047 727950326 9.890000e-90 340.0
18 TraesCS3B01G057800 chr5B 88.738 737 68 11 2147 2882 563709662 563708940 0.000000e+00 887.0
19 TraesCS3B01G057800 chr5B 87.455 279 31 2 1877 2151 563680041 563679763 4.630000e-83 318.0
20 TraesCS3B01G057800 chr5B 78.808 151 22 8 321 461 320380000 320380150 3.060000e-15 93.5
21 TraesCS3B01G057800 chr5B 78.912 147 20 7 324 461 710200024 710200168 3.960000e-14 89.8
22 TraesCS3B01G057800 chr2B 88.451 736 73 6 2147 2882 4789199 4788476 0.000000e+00 878.0
23 TraesCS3B01G057800 chr2B 88.809 277 28 3 1874 2149 296836683 296836957 1.280000e-88 337.0
24 TraesCS3B01G057800 chr2B 86.667 285 32 3 1873 2151 795109306 795109022 7.750000e-81 311.0
25 TraesCS3B01G057800 chr6B 88.131 733 75 8 2151 2882 165570524 165571245 0.000000e+00 861.0
26 TraesCS3B01G057800 chr6B 89.007 282 25 2 1876 2151 486520889 486521170 7.650000e-91 344.0
27 TraesCS3B01G057800 chrUn 88.043 736 72 10 2152 2882 70998617 70999341 0.000000e+00 857.0
28 TraesCS3B01G057800 chrUn 87.407 270 28 3 1877 2140 212046439 212046170 3.610000e-79 305.0
29 TraesCS3B01G057800 chr5D 87.995 733 72 10 2151 2882 234873590 234874307 0.000000e+00 852.0
30 TraesCS3B01G057800 chr5D 77.982 218 30 11 294 507 278283371 278283168 1.400000e-23 121.0
31 TraesCS3B01G057800 chr7D 87.900 281 28 3 1877 2151 140036675 140036955 2.770000e-85 326.0
32 TraesCS3B01G057800 chr7D 85.075 67 6 3 336 399 400903713 400903778 6.670000e-07 65.8
33 TraesCS3B01G057800 chr7A 87.544 281 28 4 1877 2151 7556741 7556462 4.630000e-83 318.0
34 TraesCS3B01G057800 chr3D 87.903 124 7 5 336 456 18622308 18622190 3.870000e-29 139.0
35 TraesCS3B01G057800 chr2A 77.570 214 35 9 325 527 379152450 379152239 1.810000e-22 117.0
36 TraesCS3B01G057800 chr1D 76.440 191 34 7 327 508 58874663 58874475 3.060000e-15 93.5
37 TraesCS3B01G057800 chr1D 86.486 74 8 2 326 397 7983450 7983523 2.380000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G057800 chr3B 30134043 30136924 2881 False 5323 5323 100.000 1 2882 1 chr3B.!!$F1 2881
1 TraesCS3B01G057800 chr3B 29686804 29688694 1890 False 1366 2353 91.471 1 1876 2 chr3B.!!$F2 1875
2 TraesCS3B01G057800 chr3A 26167113 26172407 5294 True 517 1177 90.532 1 1876 6 chr3A.!!$R2 1875
3 TraesCS3B01G057800 chr3A 26191399 26191954 555 True 497 497 83.422 520 1066 1 chr3A.!!$R1 546
4 TraesCS3B01G057800 chr6D 408627634 408628359 725 True 915 915 89.359 2151 2882 1 chr6D.!!$R1 731
5 TraesCS3B01G057800 chr4B 130725046 130725773 727 False 900 900 88.995 2151 2882 1 chr4B.!!$F1 731
6 TraesCS3B01G057800 chr7B 185077040 185077762 722 False 894 894 88.965 2151 2882 1 chr7B.!!$F2 731
7 TraesCS3B01G057800 chr7B 65478594 65479324 730 False 874 874 88.299 2151 2882 1 chr7B.!!$F1 731
8 TraesCS3B01G057800 chr5B 563708940 563709662 722 True 887 887 88.738 2147 2882 1 chr5B.!!$R2 735
9 TraesCS3B01G057800 chr2B 4788476 4789199 723 True 878 878 88.451 2147 2882 1 chr2B.!!$R1 735
10 TraesCS3B01G057800 chr6B 165570524 165571245 721 False 861 861 88.131 2151 2882 1 chr6B.!!$F1 731
11 TraesCS3B01G057800 chrUn 70998617 70999341 724 False 857 857 88.043 2152 2882 1 chrUn.!!$F1 730
12 TraesCS3B01G057800 chr5D 234873590 234874307 717 False 852 852 87.995 2151 2882 1 chr5D.!!$F1 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 3530 0.104855 GAGTGGTGTCACAGCTCACA 59.895 55.0 8.76 0.0 45.91 3.58 F
198 3531 0.541392 AGTGGTGTCACAGCTCACAA 59.459 50.0 8.76 0.0 45.91 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 4961 0.037326 ATCTGGCGTCGAAGCTTTCA 60.037 50.0 22.38 11.38 37.29 2.69 R
2018 5670 0.037975 TTTAGTCCCGAGCCACGAAC 60.038 55.0 2.48 1.47 45.77 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 3365 7.163441 GGAAGTTGTCTACTTGGGTAAATGTA 58.837 38.462 4.32 0.00 47.00 2.29
40 3373 8.789762 GTCTACTTGGGTAAATGTATGTTTGTT 58.210 33.333 0.00 0.00 0.00 2.83
44 3377 6.961360 TGGGTAAATGTATGTTTGTTCACA 57.039 33.333 0.00 0.00 0.00 3.58
99 3432 6.183361 GGACTCTCCCAACATATTGTTATCCT 60.183 42.308 0.00 0.00 38.77 3.24
153 3486 1.302752 TACTGTGCAAGCTGCTGGG 60.303 57.895 1.35 0.00 45.31 4.45
195 3528 1.613925 GTAGAGTGGTGTCACAGCTCA 59.386 52.381 20.76 9.66 45.91 4.26
196 3529 0.390860 AGAGTGGTGTCACAGCTCAC 59.609 55.000 20.76 12.92 45.91 3.51
197 3530 0.104855 GAGTGGTGTCACAGCTCACA 59.895 55.000 8.76 0.00 45.91 3.58
198 3531 0.541392 AGTGGTGTCACAGCTCACAA 59.459 50.000 8.76 0.00 45.91 3.33
199 3532 0.940126 GTGGTGTCACAGCTCACAAG 59.060 55.000 8.76 0.00 43.13 3.16
200 3533 0.829990 TGGTGTCACAGCTCACAAGA 59.170 50.000 8.76 0.00 36.43 3.02
201 3534 1.221414 GGTGTCACAGCTCACAAGAC 58.779 55.000 5.12 0.66 36.43 3.01
202 3535 1.221414 GTGTCACAGCTCACAAGACC 58.779 55.000 0.00 0.00 35.04 3.85
203 3536 0.829990 TGTCACAGCTCACAAGACCA 59.170 50.000 0.00 0.00 0.00 4.02
204 3537 1.417517 TGTCACAGCTCACAAGACCAT 59.582 47.619 0.00 0.00 0.00 3.55
205 3538 2.632512 TGTCACAGCTCACAAGACCATA 59.367 45.455 0.00 0.00 0.00 2.74
206 3539 2.996621 GTCACAGCTCACAAGACCATAC 59.003 50.000 0.00 0.00 0.00 2.39
207 3540 2.899900 TCACAGCTCACAAGACCATACT 59.100 45.455 0.00 0.00 0.00 2.12
208 3541 3.324846 TCACAGCTCACAAGACCATACTT 59.675 43.478 0.00 0.00 0.00 2.24
228 3561 4.041691 ACTTGCTCCTAAAAGCTGGTAAGA 59.958 41.667 0.00 0.00 42.94 2.10
323 3656 7.340743 CCTGAGTTTATTACCTTCTCTCTCTCA 59.659 40.741 0.00 0.00 0.00 3.27
324 3657 8.830915 TGAGTTTATTACCTTCTCTCTCTCAT 57.169 34.615 0.00 0.00 0.00 2.90
325 3658 9.922477 TGAGTTTATTACCTTCTCTCTCTCATA 57.078 33.333 0.00 0.00 0.00 2.15
437 4048 5.867716 ACTCTCGGTATAATGTTTGTGACAC 59.132 40.000 0.00 0.00 42.04 3.67
509 4121 9.487442 AAATATGAAAGAGCCTAATAAACCCAA 57.513 29.630 0.00 0.00 0.00 4.12
511 4123 6.773976 TGAAAGAGCCTAATAAACCCAATG 57.226 37.500 0.00 0.00 0.00 2.82
525 4137 4.008916 ACCCAATGGAGATAGTACACCT 57.991 45.455 0.00 0.00 34.81 4.00
526 4138 4.371681 ACCCAATGGAGATAGTACACCTT 58.628 43.478 0.00 0.00 34.81 3.50
553 4166 1.317431 GCAGTTGGCTGGCATGATCA 61.317 55.000 4.22 0.00 42.78 2.92
554 4167 0.738975 CAGTTGGCTGGCATGATCAG 59.261 55.000 4.22 4.41 39.01 2.90
638 4251 3.118075 TGGTGCTTCCATTGGATCGATTA 60.118 43.478 6.15 0.00 41.93 1.75
674 4295 0.677842 ACCGGACAAACGAGCTAACT 59.322 50.000 9.46 0.00 35.47 2.24
720 4355 5.163953 CGTTCAATATTCTATGCCGATGACC 60.164 44.000 0.00 0.00 0.00 4.02
732 4368 2.103263 GCCGATGACCTAGGAGTTGATT 59.897 50.000 17.98 0.00 0.00 2.57
807 4445 3.242712 CACAGAAAACAAATTGTCGTGGC 59.757 43.478 0.00 0.00 0.00 5.01
822 4460 4.276431 TGTCGTGGCGAAGTATATATGTCA 59.724 41.667 0.00 0.00 37.72 3.58
1009 4648 2.239400 AGGAGTGAGTGATGTCGACAA 58.761 47.619 24.13 3.63 0.00 3.18
1019 4658 0.670546 ATGTCGACAACCTCCTTGCG 60.671 55.000 24.13 0.00 32.41 4.85
1042 4681 0.595825 GCCTGCACTGTTTCTTGCAC 60.596 55.000 0.00 0.00 43.79 4.57
1144 4791 2.114670 CCTTTCGGCATCGGCACAT 61.115 57.895 0.00 0.00 43.71 3.21
1158 4805 1.078497 CACATACTGCTTCCGCCCA 60.078 57.895 0.00 0.00 34.43 5.36
1200 4847 3.303135 AAGACGCCGGCTCTGACA 61.303 61.111 26.68 0.00 0.00 3.58
1202 4849 4.057428 GACGCCGGCTCTGACAGT 62.057 66.667 26.68 13.23 0.00 3.55
1272 4919 4.115199 GCCCGGGTGATGCTTCCT 62.115 66.667 24.63 0.00 0.00 3.36
1314 4961 0.882927 CCACCACCAACGACGTCATT 60.883 55.000 17.16 2.97 0.00 2.57
1328 4975 1.783416 CGTCATTGAAAGCTTCGACGC 60.783 52.381 16.76 5.63 39.62 5.19
1460 5107 1.528824 CTGCTCATACCCCCACAGG 59.471 63.158 0.00 0.00 0.00 4.00
1467 5114 2.315459 TCATACCCCCACAGGTACTACA 59.685 50.000 0.00 0.00 45.08 2.74
1543 5192 3.411418 ATCGGCTGCTACCACGTCG 62.411 63.158 0.00 0.00 0.00 5.12
1549 5198 0.452184 CTGCTACCACGTCGACATCT 59.548 55.000 17.16 0.00 0.00 2.90
1550 5199 0.450583 TGCTACCACGTCGACATCTC 59.549 55.000 17.16 0.00 0.00 2.75
1551 5200 0.450583 GCTACCACGTCGACATCTCA 59.549 55.000 17.16 0.00 0.00 3.27
1686 5335 0.769776 CTGACCTCCATATGGGCCCT 60.770 60.000 25.70 11.37 36.21 5.19
1709 5358 0.964358 GCCAGCCACAGAAAGATGCT 60.964 55.000 0.00 0.00 0.00 3.79
1719 5368 1.139654 AGAAAGATGCTGATGCGGCTA 59.860 47.619 0.00 0.00 43.34 3.93
1749 5398 2.168621 CGCGACAGCAACGTCAAG 59.831 61.111 0.00 0.00 45.49 3.02
1787 5436 2.115910 CTCCCAGGCAGCCAACAA 59.884 61.111 15.80 0.00 0.00 2.83
1819 5471 2.280119 GCGTCAGTGACCACAGCA 60.280 61.111 17.57 0.00 0.00 4.41
1828 5480 2.585791 TGACCACAGCAAGTGCGTCA 62.586 55.000 19.55 19.55 46.56 4.35
1862 5514 1.760613 CCCCGGATACTTCTGCAACTA 59.239 52.381 0.73 0.00 0.00 2.24
1865 5517 3.448686 CCGGATACTTCTGCAACTACAG 58.551 50.000 0.00 0.00 39.12 2.74
1886 5538 4.939052 GCCAAGGCTATCACTAGTAGAA 57.061 45.455 3.59 0.00 38.26 2.10
1887 5539 5.277857 GCCAAGGCTATCACTAGTAGAAA 57.722 43.478 3.59 0.00 38.26 2.52
1888 5540 5.671493 GCCAAGGCTATCACTAGTAGAAAA 58.329 41.667 3.59 0.00 38.26 2.29
1889 5541 6.113411 GCCAAGGCTATCACTAGTAGAAAAA 58.887 40.000 3.59 0.00 38.26 1.94
1890 5542 6.037281 GCCAAGGCTATCACTAGTAGAAAAAC 59.963 42.308 3.59 0.00 38.26 2.43
1891 5543 7.331791 CCAAGGCTATCACTAGTAGAAAAACT 58.668 38.462 3.59 0.00 0.00 2.66
1892 5544 8.475639 CCAAGGCTATCACTAGTAGAAAAACTA 58.524 37.037 3.59 0.00 0.00 2.24
1906 5558 8.566008 GTAGAAAAACTACTTTACGTGAGACA 57.434 34.615 0.00 0.00 45.56 3.41
1907 5559 7.460751 AGAAAAACTACTTTACGTGAGACAC 57.539 36.000 0.00 0.00 0.00 3.67
1908 5560 7.037438 AGAAAAACTACTTTACGTGAGACACA 58.963 34.615 0.00 0.00 33.40 3.72
1909 5561 7.709613 AGAAAAACTACTTTACGTGAGACACAT 59.290 33.333 0.00 0.00 33.40 3.21
1910 5562 7.781548 AAAACTACTTTACGTGAGACACATT 57.218 32.000 0.00 0.00 33.40 2.71
1911 5563 8.876275 AAAACTACTTTACGTGAGACACATTA 57.124 30.769 0.00 0.00 33.40 1.90
1912 5564 8.516811 AAACTACTTTACGTGAGACACATTAG 57.483 34.615 0.00 0.00 33.40 1.73
1913 5565 7.211966 ACTACTTTACGTGAGACACATTAGT 57.788 36.000 0.00 0.00 33.40 2.24
1914 5566 7.303998 ACTACTTTACGTGAGACACATTAGTC 58.696 38.462 0.00 0.00 38.81 2.59
1935 5587 9.934190 TTAGTCTTAATTTGTAAACGAACCAAC 57.066 29.630 0.00 0.00 0.00 3.77
1936 5588 7.987649 AGTCTTAATTTGTAAACGAACCAACA 58.012 30.769 0.00 0.00 0.00 3.33
1937 5589 7.911727 AGTCTTAATTTGTAAACGAACCAACAC 59.088 33.333 0.00 0.00 0.00 3.32
1938 5590 7.911727 GTCTTAATTTGTAAACGAACCAACACT 59.088 33.333 0.00 0.00 0.00 3.55
1939 5591 9.107177 TCTTAATTTGTAAACGAACCAACACTA 57.893 29.630 0.00 0.00 0.00 2.74
1940 5592 9.887406 CTTAATTTGTAAACGAACCAACACTAT 57.113 29.630 0.00 0.00 0.00 2.12
1941 5593 9.666626 TTAATTTGTAAACGAACCAACACTATG 57.333 29.630 0.00 0.00 0.00 2.23
1942 5594 6.680874 TTTGTAAACGAACCAACACTATGT 57.319 33.333 0.00 0.00 0.00 2.29
1943 5595 5.660629 TGTAAACGAACCAACACTATGTG 57.339 39.130 0.00 0.00 39.75 3.21
1944 5596 5.358090 TGTAAACGAACCAACACTATGTGA 58.642 37.500 4.61 0.00 36.96 3.58
1945 5597 4.806342 AAACGAACCAACACTATGTGAC 57.194 40.909 4.61 0.00 36.96 3.67
1946 5598 2.762745 ACGAACCAACACTATGTGACC 58.237 47.619 4.61 0.00 36.96 4.02
1947 5599 2.103432 ACGAACCAACACTATGTGACCA 59.897 45.455 4.61 0.00 36.96 4.02
1948 5600 3.244422 ACGAACCAACACTATGTGACCAT 60.244 43.478 4.61 0.00 36.96 3.55
1949 5601 3.751175 CGAACCAACACTATGTGACCATT 59.249 43.478 4.61 0.00 36.96 3.16
1950 5602 4.932799 CGAACCAACACTATGTGACCATTA 59.067 41.667 4.61 0.00 36.96 1.90
1951 5603 5.063438 CGAACCAACACTATGTGACCATTAG 59.937 44.000 4.61 0.00 36.96 1.73
1952 5604 5.499004 ACCAACACTATGTGACCATTAGT 57.501 39.130 4.61 0.00 36.96 2.24
1953 5605 6.614694 ACCAACACTATGTGACCATTAGTA 57.385 37.500 4.61 0.00 36.96 1.82
1954 5606 6.403878 ACCAACACTATGTGACCATTAGTAC 58.596 40.000 4.61 0.00 36.96 2.73
1955 5607 5.815740 CCAACACTATGTGACCATTAGTACC 59.184 44.000 4.61 0.00 36.96 3.34
1956 5608 5.258456 ACACTATGTGACCATTAGTACCG 57.742 43.478 4.61 0.00 36.96 4.02
1957 5609 4.098960 ACACTATGTGACCATTAGTACCGG 59.901 45.833 0.00 0.00 36.96 5.28
1958 5610 4.098960 CACTATGTGACCATTAGTACCGGT 59.901 45.833 13.98 13.98 35.23 5.28
1959 5611 4.713321 ACTATGTGACCATTAGTACCGGTT 59.287 41.667 15.04 0.00 31.63 4.44
1960 5612 3.598019 TGTGACCATTAGTACCGGTTC 57.402 47.619 15.04 8.12 31.63 3.62
1961 5613 2.234414 TGTGACCATTAGTACCGGTTCC 59.766 50.000 15.04 3.66 31.63 3.62
1962 5614 2.234414 GTGACCATTAGTACCGGTTCCA 59.766 50.000 15.04 0.00 31.63 3.53
1963 5615 2.905085 TGACCATTAGTACCGGTTCCAA 59.095 45.455 15.04 2.66 31.63 3.53
1964 5616 3.264947 GACCATTAGTACCGGTTCCAAC 58.735 50.000 15.04 4.32 31.63 3.77
1965 5617 2.273557 CCATTAGTACCGGTTCCAACG 58.726 52.381 15.04 0.00 0.00 4.10
1971 5623 2.125269 CCGGTTCCAACGGCTAGG 60.125 66.667 0.00 0.00 45.34 3.02
1972 5624 2.818274 CGGTTCCAACGGCTAGGC 60.818 66.667 6.15 6.15 0.00 3.93
1973 5625 2.818274 GGTTCCAACGGCTAGGCG 60.818 66.667 34.16 34.16 0.00 5.52
1974 5626 2.818274 GTTCCAACGGCTAGGCGG 60.818 66.667 37.39 22.89 35.02 6.13
1975 5627 4.090588 TTCCAACGGCTAGGCGGG 62.091 66.667 37.39 29.67 33.14 6.13
1983 5635 4.937431 GCTAGGCGGGTGGGCATC 62.937 72.222 0.00 0.00 45.36 3.91
1984 5636 3.479203 CTAGGCGGGTGGGCATCA 61.479 66.667 0.00 0.00 45.36 3.07
1985 5637 2.772191 TAGGCGGGTGGGCATCAT 60.772 61.111 0.00 0.00 45.36 2.45
1986 5638 2.343475 CTAGGCGGGTGGGCATCATT 62.343 60.000 0.00 0.00 45.36 2.57
1987 5639 1.057275 TAGGCGGGTGGGCATCATTA 61.057 55.000 0.00 0.00 45.36 1.90
1988 5640 1.898574 GGCGGGTGGGCATCATTAG 60.899 63.158 0.00 0.00 41.77 1.73
1989 5641 1.152963 GCGGGTGGGCATCATTAGT 60.153 57.895 0.00 0.00 0.00 2.24
1990 5642 1.166531 GCGGGTGGGCATCATTAGTC 61.167 60.000 0.00 0.00 0.00 2.59
1991 5643 0.535102 CGGGTGGGCATCATTAGTCC 60.535 60.000 0.00 0.00 0.00 3.85
1992 5644 0.178990 GGGTGGGCATCATTAGTCCC 60.179 60.000 0.00 0.00 39.22 4.46
1993 5645 0.535102 GGTGGGCATCATTAGTCCCG 60.535 60.000 0.00 0.00 41.65 5.14
1994 5646 0.535102 GTGGGCATCATTAGTCCCGG 60.535 60.000 0.00 0.00 41.65 5.73
1995 5647 0.986019 TGGGCATCATTAGTCCCGGT 60.986 55.000 0.00 0.00 41.65 5.28
1996 5648 0.182775 GGGCATCATTAGTCCCGGTT 59.817 55.000 0.00 0.00 0.00 4.44
1997 5649 1.594331 GGCATCATTAGTCCCGGTTC 58.406 55.000 0.00 0.00 0.00 3.62
1998 5650 1.217882 GCATCATTAGTCCCGGTTCG 58.782 55.000 0.00 0.00 0.00 3.95
1999 5651 1.472728 GCATCATTAGTCCCGGTTCGT 60.473 52.381 0.00 0.00 0.00 3.85
2000 5652 2.201732 CATCATTAGTCCCGGTTCGTG 58.798 52.381 0.00 0.00 0.00 4.35
2001 5653 0.533491 TCATTAGTCCCGGTTCGTGG 59.467 55.000 0.00 0.00 0.00 4.94
2002 5654 0.248289 CATTAGTCCCGGTTCGTGGT 59.752 55.000 0.00 0.00 0.00 4.16
2003 5655 1.477700 CATTAGTCCCGGTTCGTGGTA 59.522 52.381 0.00 0.00 0.00 3.25
2004 5656 1.626686 TTAGTCCCGGTTCGTGGTAA 58.373 50.000 0.00 0.00 0.00 2.85
2005 5657 1.626686 TAGTCCCGGTTCGTGGTAAA 58.373 50.000 0.00 0.00 0.00 2.01
2006 5658 0.978907 AGTCCCGGTTCGTGGTAAAT 59.021 50.000 0.00 0.00 0.00 1.40
2007 5659 1.066645 AGTCCCGGTTCGTGGTAAATC 60.067 52.381 0.00 0.00 0.00 2.17
2008 5660 1.066645 GTCCCGGTTCGTGGTAAATCT 60.067 52.381 0.00 0.00 0.00 2.40
2009 5661 2.166254 GTCCCGGTTCGTGGTAAATCTA 59.834 50.000 0.00 0.00 0.00 1.98
2010 5662 3.033184 TCCCGGTTCGTGGTAAATCTAT 58.967 45.455 0.00 0.00 0.00 1.98
2011 5663 4.037923 GTCCCGGTTCGTGGTAAATCTATA 59.962 45.833 0.00 0.00 0.00 1.31
2012 5664 4.279169 TCCCGGTTCGTGGTAAATCTATAG 59.721 45.833 0.00 0.00 0.00 1.31
2013 5665 4.038402 CCCGGTTCGTGGTAAATCTATAGT 59.962 45.833 0.00 0.00 0.00 2.12
2014 5666 5.241506 CCCGGTTCGTGGTAAATCTATAGTA 59.758 44.000 0.00 0.00 0.00 1.82
2015 5667 6.071728 CCCGGTTCGTGGTAAATCTATAGTAT 60.072 42.308 0.00 0.00 0.00 2.12
2016 5668 7.025963 CCGGTTCGTGGTAAATCTATAGTATC 58.974 42.308 0.00 0.00 0.00 2.24
2017 5669 6.740002 CGGTTCGTGGTAAATCTATAGTATCG 59.260 42.308 0.00 0.00 0.00 2.92
2018 5670 7.025963 GGTTCGTGGTAAATCTATAGTATCGG 58.974 42.308 0.00 0.00 0.00 4.18
2019 5671 7.308830 GGTTCGTGGTAAATCTATAGTATCGGT 60.309 40.741 0.00 0.00 0.00 4.69
2020 5672 7.750229 TCGTGGTAAATCTATAGTATCGGTT 57.250 36.000 0.00 0.00 0.00 4.44
2021 5673 7.810658 TCGTGGTAAATCTATAGTATCGGTTC 58.189 38.462 0.00 0.00 0.00 3.62
2022 5674 6.740002 CGTGGTAAATCTATAGTATCGGTTCG 59.260 42.308 0.00 0.00 0.00 3.95
2023 5675 7.571983 CGTGGTAAATCTATAGTATCGGTTCGT 60.572 40.741 0.00 0.00 0.00 3.85
2024 5676 7.536622 GTGGTAAATCTATAGTATCGGTTCGTG 59.463 40.741 0.00 0.00 0.00 4.35
2025 5677 7.025963 GGTAAATCTATAGTATCGGTTCGTGG 58.974 42.308 0.00 0.00 0.00 4.94
2026 5678 4.698583 ATCTATAGTATCGGTTCGTGGC 57.301 45.455 0.00 0.00 0.00 5.01
2027 5679 3.748083 TCTATAGTATCGGTTCGTGGCT 58.252 45.455 0.00 0.00 0.00 4.75
2028 5680 3.750130 TCTATAGTATCGGTTCGTGGCTC 59.250 47.826 0.00 0.00 0.00 4.70
2029 5681 0.659427 TAGTATCGGTTCGTGGCTCG 59.341 55.000 1.94 1.94 41.41 5.03
2030 5682 1.588139 GTATCGGTTCGTGGCTCGG 60.588 63.158 9.26 0.00 40.32 4.63
2031 5683 2.777972 TATCGGTTCGTGGCTCGGG 61.778 63.158 9.26 0.00 40.32 5.14
2034 5686 3.692406 GGTTCGTGGCTCGGGACT 61.692 66.667 9.26 0.00 40.32 3.85
2035 5687 2.345760 GGTTCGTGGCTCGGGACTA 61.346 63.158 9.26 0.00 40.32 2.59
2036 5688 1.588082 GTTCGTGGCTCGGGACTAA 59.412 57.895 9.26 0.00 40.32 2.24
2037 5689 0.037975 GTTCGTGGCTCGGGACTAAA 60.038 55.000 9.26 0.00 40.32 1.85
2038 5690 0.245539 TTCGTGGCTCGGGACTAAAG 59.754 55.000 9.26 0.00 40.32 1.85
2039 5691 1.153628 CGTGGCTCGGGACTAAAGG 60.154 63.158 0.13 0.00 35.71 3.11
2040 5692 1.221021 GTGGCTCGGGACTAAAGGG 59.779 63.158 0.00 0.00 0.00 3.95
2041 5693 1.079621 TGGCTCGGGACTAAAGGGA 59.920 57.895 0.00 0.00 0.00 4.20
2042 5694 0.326238 TGGCTCGGGACTAAAGGGAT 60.326 55.000 0.00 0.00 0.00 3.85
2043 5695 0.106894 GGCTCGGGACTAAAGGGATG 59.893 60.000 0.00 0.00 0.00 3.51
2044 5696 0.106894 GCTCGGGACTAAAGGGATGG 59.893 60.000 0.00 0.00 0.00 3.51
2045 5697 1.497161 CTCGGGACTAAAGGGATGGT 58.503 55.000 0.00 0.00 0.00 3.55
2046 5698 1.139058 CTCGGGACTAAAGGGATGGTG 59.861 57.143 0.00 0.00 0.00 4.17
2047 5699 0.180406 CGGGACTAAAGGGATGGTGG 59.820 60.000 0.00 0.00 0.00 4.61
2048 5700 0.106669 GGGACTAAAGGGATGGTGGC 60.107 60.000 0.00 0.00 0.00 5.01
2049 5701 0.623723 GGACTAAAGGGATGGTGGCA 59.376 55.000 0.00 0.00 0.00 4.92
2050 5702 1.408822 GGACTAAAGGGATGGTGGCAG 60.409 57.143 0.00 0.00 0.00 4.85
2051 5703 0.625849 ACTAAAGGGATGGTGGCAGG 59.374 55.000 0.00 0.00 0.00 4.85
2052 5704 0.753111 CTAAAGGGATGGTGGCAGGC 60.753 60.000 0.00 0.00 0.00 4.85
2053 5705 1.214305 TAAAGGGATGGTGGCAGGCT 61.214 55.000 0.00 0.00 0.00 4.58
2054 5706 2.793317 AAAGGGATGGTGGCAGGCTG 62.793 60.000 10.94 10.94 0.00 4.85
2055 5707 4.828296 GGGATGGTGGCAGGCTGG 62.828 72.222 17.64 0.00 0.00 4.85
2056 5708 4.052518 GGATGGTGGCAGGCTGGT 62.053 66.667 17.64 0.00 0.00 4.00
2057 5709 2.753043 GATGGTGGCAGGCTGGTG 60.753 66.667 17.64 0.00 0.00 4.17
2058 5710 3.574074 GATGGTGGCAGGCTGGTGT 62.574 63.158 17.64 0.00 0.00 4.16
2059 5711 3.574074 ATGGTGGCAGGCTGGTGTC 62.574 63.158 17.64 0.00 0.00 3.67
2060 5712 4.269523 GGTGGCAGGCTGGTGTCA 62.270 66.667 17.64 0.00 0.00 3.58
2061 5713 2.670934 GTGGCAGGCTGGTGTCAG 60.671 66.667 17.64 0.00 43.64 3.51
2062 5714 3.957586 TGGCAGGCTGGTGTCAGG 61.958 66.667 17.64 0.00 41.19 3.86
2068 5720 4.729918 GCTGGTGTCAGGCTGGGG 62.730 72.222 15.73 0.30 41.19 4.96
2069 5721 4.729918 CTGGTGTCAGGCTGGGGC 62.730 72.222 15.73 6.19 37.36 5.80
2084 5736 3.590574 GGCCCCACCAGTCCCTTT 61.591 66.667 0.00 0.00 38.86 3.11
2085 5737 2.235761 GGCCCCACCAGTCCCTTTA 61.236 63.158 0.00 0.00 38.86 1.85
2086 5738 1.303282 GCCCCACCAGTCCCTTTAG 59.697 63.158 0.00 0.00 0.00 1.85
2087 5739 1.498176 GCCCCACCAGTCCCTTTAGT 61.498 60.000 0.00 0.00 0.00 2.24
2088 5740 0.618981 CCCCACCAGTCCCTTTAGTC 59.381 60.000 0.00 0.00 0.00 2.59
2089 5741 0.618981 CCCACCAGTCCCTTTAGTCC 59.381 60.000 0.00 0.00 0.00 3.85
2090 5742 0.618981 CCACCAGTCCCTTTAGTCCC 59.381 60.000 0.00 0.00 0.00 4.46
2091 5743 0.249398 CACCAGTCCCTTTAGTCCCG 59.751 60.000 0.00 0.00 0.00 5.14
2092 5744 0.908180 ACCAGTCCCTTTAGTCCCGG 60.908 60.000 0.00 0.00 0.00 5.73
2093 5745 0.908180 CCAGTCCCTTTAGTCCCGGT 60.908 60.000 0.00 0.00 0.00 5.28
2094 5746 0.981943 CAGTCCCTTTAGTCCCGGTT 59.018 55.000 0.00 0.00 0.00 4.44
2095 5747 1.066358 CAGTCCCTTTAGTCCCGGTTC 60.066 57.143 0.00 0.00 0.00 3.62
2096 5748 0.108472 GTCCCTTTAGTCCCGGTTCG 60.108 60.000 0.00 0.00 0.00 3.95
2097 5749 0.542702 TCCCTTTAGTCCCGGTTCGT 60.543 55.000 0.00 0.00 0.00 3.85
2098 5750 0.390735 CCCTTTAGTCCCGGTTCGTG 60.391 60.000 0.00 0.00 0.00 4.35
2099 5751 0.390735 CCTTTAGTCCCGGTTCGTGG 60.391 60.000 0.00 0.00 0.00 4.94
2100 5752 1.004679 TTTAGTCCCGGTTCGTGGC 60.005 57.895 0.00 0.00 0.00 5.01
2101 5753 2.453379 TTTAGTCCCGGTTCGTGGCC 62.453 60.000 0.00 0.00 0.00 5.36
2105 5757 4.958897 CCCGGTTCGTGGCCCAAA 62.959 66.667 0.00 0.00 0.00 3.28
2106 5758 3.666253 CCGGTTCGTGGCCCAAAC 61.666 66.667 0.00 1.42 0.00 2.93
2107 5759 3.666253 CGGTTCGTGGCCCAAACC 61.666 66.667 17.06 17.06 39.25 3.27
2108 5760 3.666253 GGTTCGTGGCCCAAACCG 61.666 66.667 13.42 0.00 33.68 4.44
2109 5761 3.666253 GTTCGTGGCCCAAACCGG 61.666 66.667 0.00 0.00 0.00 5.28
2110 5762 4.192453 TTCGTGGCCCAAACCGGT 62.192 61.111 0.00 0.00 0.00 5.28
2111 5763 2.815945 TTCGTGGCCCAAACCGGTA 61.816 57.895 8.00 0.00 0.00 4.02
2112 5764 3.051479 CGTGGCCCAAACCGGTAC 61.051 66.667 8.00 0.00 0.00 3.34
2113 5765 2.433004 GTGGCCCAAACCGGTACT 59.567 61.111 8.00 0.00 0.00 2.73
2114 5766 1.678724 GTGGCCCAAACCGGTACTA 59.321 57.895 8.00 0.00 0.00 1.82
2115 5767 0.392060 GTGGCCCAAACCGGTACTAG 60.392 60.000 8.00 0.00 0.00 2.57
2116 5768 0.544833 TGGCCCAAACCGGTACTAGA 60.545 55.000 8.00 0.00 0.00 2.43
2117 5769 0.177373 GGCCCAAACCGGTACTAGAG 59.823 60.000 8.00 0.00 0.00 2.43
2118 5770 0.177373 GCCCAAACCGGTACTAGAGG 59.823 60.000 8.00 4.46 0.00 3.69
2119 5771 0.177373 CCCAAACCGGTACTAGAGGC 59.823 60.000 8.00 0.00 0.00 4.70
2120 5772 1.192428 CCAAACCGGTACTAGAGGCT 58.808 55.000 8.00 0.00 0.00 4.58
2121 5773 1.136500 CCAAACCGGTACTAGAGGCTC 59.864 57.143 8.00 6.34 0.00 4.70
2122 5774 1.822990 CAAACCGGTACTAGAGGCTCA 59.177 52.381 18.26 1.80 0.00 4.26
2123 5775 1.472188 AACCGGTACTAGAGGCTCAC 58.528 55.000 18.26 5.69 0.00 3.51
2124 5776 0.395448 ACCGGTACTAGAGGCTCACC 60.395 60.000 18.26 14.06 0.00 4.02
2134 5786 4.934989 GGCTCACCTTTAGTCCCG 57.065 61.111 0.00 0.00 0.00 5.14
2135 5787 1.221021 GGCTCACCTTTAGTCCCGG 59.779 63.158 0.00 0.00 0.00 5.73
2136 5788 1.551019 GGCTCACCTTTAGTCCCGGT 61.551 60.000 0.00 0.00 0.00 5.28
2137 5789 0.323957 GCTCACCTTTAGTCCCGGTT 59.676 55.000 0.00 0.00 0.00 4.44
2138 5790 1.271217 GCTCACCTTTAGTCCCGGTTT 60.271 52.381 0.00 0.00 0.00 3.27
2139 5791 2.423577 CTCACCTTTAGTCCCGGTTTG 58.576 52.381 0.00 0.00 0.00 2.93
2140 5792 1.770061 TCACCTTTAGTCCCGGTTTGT 59.230 47.619 0.00 0.00 0.00 2.83
2141 5793 1.877443 CACCTTTAGTCCCGGTTTGTG 59.123 52.381 0.00 0.00 0.00 3.33
2142 5794 1.491754 ACCTTTAGTCCCGGTTTGTGT 59.508 47.619 0.00 0.00 0.00 3.72
2143 5795 2.148768 CCTTTAGTCCCGGTTTGTGTC 58.851 52.381 0.00 0.00 0.00 3.67
2144 5796 2.485835 CCTTTAGTCCCGGTTTGTGTCA 60.486 50.000 0.00 0.00 0.00 3.58
2145 5797 3.408634 CTTTAGTCCCGGTTTGTGTCAT 58.591 45.455 0.00 0.00 0.00 3.06
2149 5801 1.265905 GTCCCGGTTTGTGTCATGAAC 59.734 52.381 0.00 0.00 0.00 3.18
2166 5818 3.583228 TGAACCTCACCTTTAGTCCTGA 58.417 45.455 0.00 0.00 0.00 3.86
2259 5922 1.282447 GTTCTTCCCCTTTCCCCTCTC 59.718 57.143 0.00 0.00 0.00 3.20
2260 5923 0.253207 TCTTCCCCTTTCCCCTCTCC 60.253 60.000 0.00 0.00 0.00 3.71
2261 5924 1.230182 TTCCCCTTTCCCCTCTCCC 60.230 63.158 0.00 0.00 0.00 4.30
2262 5925 2.696504 CCCCTTTCCCCTCTCCCC 60.697 72.222 0.00 0.00 0.00 4.81
2266 5929 0.692756 CCTTTCCCCTCTCCCCTCTC 60.693 65.000 0.00 0.00 0.00 3.20
2336 6000 1.533625 TGTCAAGATTTGAAGGCCCG 58.466 50.000 0.00 0.00 42.15 6.13
2337 6001 1.202879 TGTCAAGATTTGAAGGCCCGT 60.203 47.619 0.00 0.00 42.15 5.28
2360 6024 6.403964 CGTCATTCATCCAAGTGATCACAAAT 60.404 38.462 27.02 10.51 0.00 2.32
2376 6040 6.201226 TCACAAATGTTAGCAACTTTGTCA 57.799 33.333 7.95 0.00 38.96 3.58
2377 6041 6.804677 TCACAAATGTTAGCAACTTTGTCAT 58.195 32.000 7.95 0.00 38.96 3.06
2469 6134 5.984725 TGGGAGTAATTGTATGTGGTAGTG 58.015 41.667 0.00 0.00 0.00 2.74
2542 6207 6.230849 TGTAGGTGTTGTTTACTTAATGCG 57.769 37.500 0.00 0.00 0.00 4.73
2583 6248 2.431942 GTCGATCGCCCGTGTTGT 60.432 61.111 11.09 0.00 0.00 3.32
2587 6252 1.669760 GATCGCCCGTGTTGTTCCA 60.670 57.895 0.00 0.00 0.00 3.53
2694 6364 9.941325 TTACTTGTATGATTTTCTTACCCGTAA 57.059 29.630 0.00 0.00 0.00 3.18
2707 6378 8.449251 TTCTTACCCGTAAGTTGTTTGTTATT 57.551 30.769 13.00 0.00 42.29 1.40
2738 6409 1.916874 TGGTTTTGATATCCGTCCCCA 59.083 47.619 0.00 0.00 0.00 4.96
2743 6414 0.178944 TGATATCCGTCCCCATCGGT 60.179 55.000 0.00 0.00 46.86 4.69
2744 6415 0.974383 GATATCCGTCCCCATCGGTT 59.026 55.000 4.36 0.00 46.86 4.44
2835 6506 6.357579 TGACAAATTATGCCCATCAAGTTT 57.642 33.333 0.00 0.00 0.00 2.66
2845 6517 7.986085 ATGCCCATCAAGTTTACATAGATAC 57.014 36.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 3373 9.013229 ACATTATGCTTTCAGAAGTATTTGTGA 57.987 29.630 0.00 0.00 38.80 3.58
44 3377 7.761249 GCCAACATTATGCTTTCAGAAGTATTT 59.239 33.333 0.00 0.00 38.80 1.40
113 3446 3.773119 ACCCCTGTGTTGTGTATAGGTAG 59.227 47.826 0.00 0.00 0.00 3.18
153 3486 4.202409 ACCTATCAGCCTTAGCCTGATTTC 60.202 45.833 10.98 0.00 41.25 2.17
200 3533 4.265073 CAGCTTTTAGGAGCAAGTATGGT 58.735 43.478 0.00 0.00 45.12 3.55
201 3534 3.629398 CCAGCTTTTAGGAGCAAGTATGG 59.371 47.826 0.00 0.00 45.12 2.74
202 3535 4.265073 ACCAGCTTTTAGGAGCAAGTATG 58.735 43.478 0.00 0.00 45.12 2.39
203 3536 4.576330 ACCAGCTTTTAGGAGCAAGTAT 57.424 40.909 0.00 0.00 45.12 2.12
204 3537 5.247564 TCTTACCAGCTTTTAGGAGCAAGTA 59.752 40.000 0.00 0.00 45.12 2.24
205 3538 2.959465 ACCAGCTTTTAGGAGCAAGT 57.041 45.000 0.00 0.00 45.12 3.16
206 3539 4.393371 GTCTTACCAGCTTTTAGGAGCAAG 59.607 45.833 0.00 0.00 45.12 4.01
207 3540 4.324267 GTCTTACCAGCTTTTAGGAGCAA 58.676 43.478 0.00 0.00 45.12 3.91
208 3541 3.307480 GGTCTTACCAGCTTTTAGGAGCA 60.307 47.826 7.45 0.00 45.12 4.26
209 3542 3.055021 AGGTCTTACCAGCTTTTAGGAGC 60.055 47.826 0.00 5.09 41.95 4.70
210 3543 4.020128 ACAGGTCTTACCAGCTTTTAGGAG 60.020 45.833 0.00 0.00 41.95 3.69
211 3544 3.908103 ACAGGTCTTACCAGCTTTTAGGA 59.092 43.478 0.00 0.00 41.95 2.94
212 3545 4.254492 GACAGGTCTTACCAGCTTTTAGG 58.746 47.826 0.00 0.00 41.95 2.69
213 3546 4.894784 TGACAGGTCTTACCAGCTTTTAG 58.105 43.478 0.65 0.00 41.95 1.85
214 3547 4.967084 TGACAGGTCTTACCAGCTTTTA 57.033 40.909 0.65 0.00 41.95 1.52
228 3561 1.408340 CGAGAGATGAGCATGACAGGT 59.592 52.381 0.00 0.00 0.00 4.00
491 4103 5.193728 TCTCCATTGGGTTTATTAGGCTCTT 59.806 40.000 2.09 0.00 34.93 2.85
509 4121 6.747414 TGCAATAAGGTGTACTATCTCCAT 57.253 37.500 0.00 0.00 0.00 3.41
511 4123 5.467063 GCTTGCAATAAGGTGTACTATCTCC 59.533 44.000 0.00 0.00 0.00 3.71
553 4166 2.217510 TTACTCTGAGAACGAGGCCT 57.782 50.000 3.86 3.86 32.83 5.19
554 4167 3.528597 ATTTACTCTGAGAACGAGGCC 57.471 47.619 12.44 0.00 32.83 5.19
674 4295 4.207165 GGGCAATTGGTATCTCAAGCTAA 58.793 43.478 7.72 0.00 0.00 3.09
720 4355 7.286546 TGGATAGACTTCTCAATCAACTCCTAG 59.713 40.741 0.00 0.00 0.00 3.02
732 4368 3.367646 AGGACGTGGATAGACTTCTCA 57.632 47.619 0.00 0.00 0.00 3.27
838 4476 4.822685 TGCAAAACCATGGAAGCAATAT 57.177 36.364 21.47 0.00 0.00 1.28
910 4548 8.202811 GGCCAGTTAAGTAGTACTAGCTTTTAT 58.797 37.037 17.28 6.54 31.09 1.40
1019 4658 1.458639 AAGAAACAGTGCAGGCAGCC 61.459 55.000 1.84 1.84 44.83 4.85
1193 4840 0.319728 CTGGGTGGTGACTGTCAGAG 59.680 60.000 11.41 0.00 0.00 3.35
1272 4919 4.873810 AAGCACTGCCACGCCACA 62.874 61.111 0.00 0.00 0.00 4.17
1314 4961 0.037326 ATCTGGCGTCGAAGCTTTCA 60.037 50.000 22.38 11.38 37.29 2.69
1443 5090 0.043485 TACCTGTGGGGGTATGAGCA 59.957 55.000 0.00 0.00 40.48 4.26
1535 5184 1.585006 GGTGAGATGTCGACGTGGT 59.415 57.895 16.54 1.46 0.00 4.16
1538 5187 2.697761 CCCGGTGAGATGTCGACGT 61.698 63.158 10.75 10.75 0.00 4.34
1543 5192 2.359169 TGAGGCCCGGTGAGATGTC 61.359 63.158 0.00 0.00 0.00 3.06
1566 5215 5.208294 AGGAGTAGAACCTCATCCAGTTA 57.792 43.478 0.00 0.00 31.43 2.24
1709 5358 3.094062 GCCCAGTCTAGCCGCATCA 62.094 63.158 0.00 0.00 0.00 3.07
1749 5398 2.647158 GGTCAGGGAGTCGGTGGAC 61.647 68.421 0.00 0.00 43.76 4.02
1779 5428 1.074951 GTACCCTGGCTTGTTGGCT 59.925 57.895 0.00 0.00 42.34 4.75
1819 5471 2.254546 TTGATGGACTTGACGCACTT 57.745 45.000 0.00 0.00 0.00 3.16
1862 5514 2.472029 ACTAGTGATAGCCTTGGCTGT 58.528 47.619 23.03 17.13 0.00 4.40
1865 5517 4.939052 TTCTACTAGTGATAGCCTTGGC 57.061 45.455 5.39 2.97 0.00 4.52
1881 5533 8.475359 GTGTCTCACGTAAAGTAGTTTTTCTAC 58.525 37.037 0.00 0.00 46.68 2.59
1882 5534 8.190122 TGTGTCTCACGTAAAGTAGTTTTTCTA 58.810 33.333 0.00 0.00 37.14 2.10
1883 5535 7.037438 TGTGTCTCACGTAAAGTAGTTTTTCT 58.963 34.615 0.00 0.00 37.14 2.52
1884 5536 7.225523 TGTGTCTCACGTAAAGTAGTTTTTC 57.774 36.000 0.00 0.00 37.14 2.29
1885 5537 7.781548 ATGTGTCTCACGTAAAGTAGTTTTT 57.218 32.000 0.00 0.00 37.14 1.94
1886 5538 7.781548 AATGTGTCTCACGTAAAGTAGTTTT 57.218 32.000 0.00 0.00 37.14 2.43
1887 5539 8.139989 ACTAATGTGTCTCACGTAAAGTAGTTT 58.860 33.333 0.37 0.37 37.14 2.66
1888 5540 7.655490 ACTAATGTGTCTCACGTAAAGTAGTT 58.345 34.615 0.00 0.00 37.14 2.24
1889 5541 7.174599 AGACTAATGTGTCTCACGTAAAGTAGT 59.825 37.037 0.00 6.83 43.04 2.73
1890 5542 7.528307 AGACTAATGTGTCTCACGTAAAGTAG 58.472 38.462 0.00 4.56 43.04 2.57
1891 5543 7.444629 AGACTAATGTGTCTCACGTAAAGTA 57.555 36.000 0.00 0.00 43.04 2.24
1892 5544 6.328641 AGACTAATGTGTCTCACGTAAAGT 57.671 37.500 0.00 8.65 43.04 2.66
1893 5545 8.738199 TTAAGACTAATGTGTCTCACGTAAAG 57.262 34.615 0.00 0.00 45.49 1.85
1894 5546 9.701098 AATTAAGACTAATGTGTCTCACGTAAA 57.299 29.630 0.00 0.00 45.49 2.01
1895 5547 9.701098 AAATTAAGACTAATGTGTCTCACGTAA 57.299 29.630 0.00 0.00 45.49 3.18
1896 5548 9.135843 CAAATTAAGACTAATGTGTCTCACGTA 57.864 33.333 0.00 0.00 45.49 3.57
1897 5549 7.656137 ACAAATTAAGACTAATGTGTCTCACGT 59.344 33.333 0.00 0.00 40.54 4.49
1898 5550 8.018677 ACAAATTAAGACTAATGTGTCTCACG 57.981 34.615 0.00 0.00 40.54 4.35
1909 5561 9.934190 GTTGGTTCGTTTACAAATTAAGACTAA 57.066 29.630 0.00 0.00 0.00 2.24
1910 5562 9.107177 TGTTGGTTCGTTTACAAATTAAGACTA 57.893 29.630 0.00 0.00 0.00 2.59
1911 5563 7.911727 GTGTTGGTTCGTTTACAAATTAAGACT 59.088 33.333 0.00 0.00 0.00 3.24
1912 5564 7.911727 AGTGTTGGTTCGTTTACAAATTAAGAC 59.088 33.333 0.00 0.00 0.00 3.01
1913 5565 7.987649 AGTGTTGGTTCGTTTACAAATTAAGA 58.012 30.769 0.00 0.00 0.00 2.10
1914 5566 9.887406 ATAGTGTTGGTTCGTTTACAAATTAAG 57.113 29.630 0.00 0.00 0.00 1.85
1915 5567 9.666626 CATAGTGTTGGTTCGTTTACAAATTAA 57.333 29.630 0.00 0.00 0.00 1.40
1916 5568 8.838365 ACATAGTGTTGGTTCGTTTACAAATTA 58.162 29.630 0.00 0.00 0.00 1.40
1917 5569 7.646130 CACATAGTGTTGGTTCGTTTACAAATT 59.354 33.333 0.00 0.00 0.00 1.82
1918 5570 7.012515 TCACATAGTGTTGGTTCGTTTACAAAT 59.987 33.333 0.00 0.00 34.79 2.32
1919 5571 6.315642 TCACATAGTGTTGGTTCGTTTACAAA 59.684 34.615 0.00 0.00 34.79 2.83
1920 5572 5.816258 TCACATAGTGTTGGTTCGTTTACAA 59.184 36.000 0.00 0.00 34.79 2.41
1921 5573 5.234757 GTCACATAGTGTTGGTTCGTTTACA 59.765 40.000 0.00 0.00 34.79 2.41
1922 5574 5.333568 GGTCACATAGTGTTGGTTCGTTTAC 60.334 44.000 0.00 0.00 34.79 2.01
1923 5575 4.751098 GGTCACATAGTGTTGGTTCGTTTA 59.249 41.667 0.00 0.00 34.79 2.01
1924 5576 3.562557 GGTCACATAGTGTTGGTTCGTTT 59.437 43.478 0.00 0.00 34.79 3.60
1925 5577 3.135994 GGTCACATAGTGTTGGTTCGTT 58.864 45.455 0.00 0.00 34.79 3.85
1926 5578 2.103432 TGGTCACATAGTGTTGGTTCGT 59.897 45.455 0.00 0.00 34.79 3.85
1927 5579 2.761559 TGGTCACATAGTGTTGGTTCG 58.238 47.619 0.00 0.00 34.79 3.95
1928 5580 5.938125 ACTAATGGTCACATAGTGTTGGTTC 59.062 40.000 0.00 0.00 35.94 3.62
1929 5581 5.876357 ACTAATGGTCACATAGTGTTGGTT 58.124 37.500 0.00 0.00 35.94 3.67
1930 5582 5.499004 ACTAATGGTCACATAGTGTTGGT 57.501 39.130 0.00 0.00 35.94 3.67
1931 5583 5.815740 GGTACTAATGGTCACATAGTGTTGG 59.184 44.000 0.00 0.00 35.94 3.77
1932 5584 5.518847 CGGTACTAATGGTCACATAGTGTTG 59.481 44.000 0.00 0.00 35.94 3.33
1933 5585 5.394883 CCGGTACTAATGGTCACATAGTGTT 60.395 44.000 0.00 0.00 35.94 3.32
1934 5586 4.098960 CCGGTACTAATGGTCACATAGTGT 59.901 45.833 0.00 0.00 35.94 3.55
1935 5587 4.098960 ACCGGTACTAATGGTCACATAGTG 59.901 45.833 4.49 0.00 35.94 2.74
1936 5588 4.284178 ACCGGTACTAATGGTCACATAGT 58.716 43.478 4.49 0.00 35.94 2.12
1937 5589 4.931661 ACCGGTACTAATGGTCACATAG 57.068 45.455 4.49 0.00 35.94 2.23
1938 5590 4.099881 GGAACCGGTACTAATGGTCACATA 59.900 45.833 8.00 0.00 35.94 2.29
1939 5591 3.118519 GGAACCGGTACTAATGGTCACAT 60.119 47.826 8.00 0.00 39.54 3.21
1940 5592 2.234414 GGAACCGGTACTAATGGTCACA 59.766 50.000 8.00 0.00 34.11 3.58
1941 5593 2.234414 TGGAACCGGTACTAATGGTCAC 59.766 50.000 8.00 0.00 34.11 3.67
1942 5594 2.538222 TGGAACCGGTACTAATGGTCA 58.462 47.619 8.00 0.00 34.11 4.02
1943 5595 3.264947 GTTGGAACCGGTACTAATGGTC 58.735 50.000 8.00 0.00 34.11 4.02
1944 5596 2.354003 CGTTGGAACCGGTACTAATGGT 60.354 50.000 8.00 0.00 37.68 3.55
1945 5597 2.273557 CGTTGGAACCGGTACTAATGG 58.726 52.381 8.00 0.00 0.00 3.16
1946 5598 2.273557 CCGTTGGAACCGGTACTAATG 58.726 52.381 8.00 8.62 40.59 1.90
1947 5599 2.678471 CCGTTGGAACCGGTACTAAT 57.322 50.000 8.00 0.00 40.59 1.73
1955 5607 2.818274 GCCTAGCCGTTGGAACCG 60.818 66.667 0.00 0.00 0.00 4.44
1956 5608 2.818274 CGCCTAGCCGTTGGAACC 60.818 66.667 0.00 0.00 0.00 3.62
1957 5609 2.818274 CCGCCTAGCCGTTGGAAC 60.818 66.667 0.00 0.00 0.00 3.62
1958 5610 4.090588 CCCGCCTAGCCGTTGGAA 62.091 66.667 0.00 0.00 0.00 3.53
1966 5618 4.937431 GATGCCCACCCGCCTAGC 62.937 72.222 0.00 0.00 0.00 3.42
1967 5619 2.343475 AATGATGCCCACCCGCCTAG 62.343 60.000 0.00 0.00 0.00 3.02
1968 5620 1.057275 TAATGATGCCCACCCGCCTA 61.057 55.000 0.00 0.00 0.00 3.93
1969 5621 2.343475 CTAATGATGCCCACCCGCCT 62.343 60.000 0.00 0.00 0.00 5.52
1970 5622 1.898574 CTAATGATGCCCACCCGCC 60.899 63.158 0.00 0.00 0.00 6.13
1971 5623 1.152963 ACTAATGATGCCCACCCGC 60.153 57.895 0.00 0.00 0.00 6.13
1972 5624 0.535102 GGACTAATGATGCCCACCCG 60.535 60.000 0.00 0.00 0.00 5.28
1973 5625 0.178990 GGGACTAATGATGCCCACCC 60.179 60.000 0.00 0.00 40.39 4.61
1974 5626 0.535102 CGGGACTAATGATGCCCACC 60.535 60.000 0.00 0.00 40.71 4.61
1975 5627 0.535102 CCGGGACTAATGATGCCCAC 60.535 60.000 0.00 0.00 40.71 4.61
1976 5628 0.986019 ACCGGGACTAATGATGCCCA 60.986 55.000 6.32 0.00 40.71 5.36
1977 5629 0.182775 AACCGGGACTAATGATGCCC 59.817 55.000 6.32 0.00 37.21 5.36
1978 5630 1.594331 GAACCGGGACTAATGATGCC 58.406 55.000 6.32 0.00 0.00 4.40
1979 5631 1.217882 CGAACCGGGACTAATGATGC 58.782 55.000 6.32 0.00 0.00 3.91
1980 5632 2.201732 CACGAACCGGGACTAATGATG 58.798 52.381 6.32 0.00 28.17 3.07
1981 5633 1.138266 CCACGAACCGGGACTAATGAT 59.862 52.381 6.32 0.00 28.17 2.45
1982 5634 0.533491 CCACGAACCGGGACTAATGA 59.467 55.000 6.32 0.00 28.17 2.57
1983 5635 0.248289 ACCACGAACCGGGACTAATG 59.752 55.000 6.32 0.00 28.17 1.90
1984 5636 1.851304 TACCACGAACCGGGACTAAT 58.149 50.000 6.32 0.00 28.17 1.73
1985 5637 1.626686 TTACCACGAACCGGGACTAA 58.373 50.000 6.32 0.00 28.17 2.24
1986 5638 1.626686 TTTACCACGAACCGGGACTA 58.373 50.000 6.32 0.00 28.17 2.59
1987 5639 0.978907 ATTTACCACGAACCGGGACT 59.021 50.000 6.32 0.00 28.17 3.85
1988 5640 1.066645 AGATTTACCACGAACCGGGAC 60.067 52.381 6.32 0.00 28.17 4.46
1989 5641 1.269012 AGATTTACCACGAACCGGGA 58.731 50.000 6.32 0.00 28.17 5.14
1990 5642 2.965572 TAGATTTACCACGAACCGGG 57.034 50.000 6.32 0.00 0.00 5.73
1991 5643 5.192327 ACTATAGATTTACCACGAACCGG 57.808 43.478 6.78 0.00 0.00 5.28
1992 5644 6.740002 CGATACTATAGATTTACCACGAACCG 59.260 42.308 6.78 0.00 0.00 4.44
1993 5645 7.025963 CCGATACTATAGATTTACCACGAACC 58.974 42.308 6.78 0.00 0.00 3.62
1994 5646 7.588512 ACCGATACTATAGATTTACCACGAAC 58.411 38.462 6.78 0.00 0.00 3.95
1995 5647 7.750229 ACCGATACTATAGATTTACCACGAA 57.250 36.000 6.78 0.00 0.00 3.85
1996 5648 7.360353 CGAACCGATACTATAGATTTACCACGA 60.360 40.741 6.78 0.00 0.00 4.35
1997 5649 6.740002 CGAACCGATACTATAGATTTACCACG 59.260 42.308 6.78 0.85 0.00 4.94
1998 5650 7.536622 CACGAACCGATACTATAGATTTACCAC 59.463 40.741 6.78 0.00 0.00 4.16
1999 5651 7.308770 CCACGAACCGATACTATAGATTTACCA 60.309 40.741 6.78 0.00 0.00 3.25
2000 5652 7.025963 CCACGAACCGATACTATAGATTTACC 58.974 42.308 6.78 0.00 0.00 2.85
2001 5653 6.525976 GCCACGAACCGATACTATAGATTTAC 59.474 42.308 6.78 0.00 0.00 2.01
2002 5654 6.432162 AGCCACGAACCGATACTATAGATTTA 59.568 38.462 6.78 0.00 0.00 1.40
2003 5655 5.243283 AGCCACGAACCGATACTATAGATTT 59.757 40.000 6.78 0.00 0.00 2.17
2004 5656 4.765856 AGCCACGAACCGATACTATAGATT 59.234 41.667 6.78 0.00 0.00 2.40
2005 5657 4.333690 AGCCACGAACCGATACTATAGAT 58.666 43.478 6.78 0.00 0.00 1.98
2006 5658 3.748083 AGCCACGAACCGATACTATAGA 58.252 45.455 6.78 0.00 0.00 1.98
2007 5659 3.424565 CGAGCCACGAACCGATACTATAG 60.425 52.174 0.00 0.00 45.77 1.31
2008 5660 2.481568 CGAGCCACGAACCGATACTATA 59.518 50.000 0.00 0.00 45.77 1.31
2009 5661 1.266175 CGAGCCACGAACCGATACTAT 59.734 52.381 0.00 0.00 45.77 2.12
2010 5662 0.659427 CGAGCCACGAACCGATACTA 59.341 55.000 0.00 0.00 45.77 1.82
2011 5663 1.432251 CGAGCCACGAACCGATACT 59.568 57.895 0.00 0.00 45.77 2.12
2012 5664 1.588139 CCGAGCCACGAACCGATAC 60.588 63.158 2.48 0.00 45.77 2.24
2013 5665 2.777972 CCCGAGCCACGAACCGATA 61.778 63.158 2.48 0.00 45.77 2.92
2014 5666 4.143333 CCCGAGCCACGAACCGAT 62.143 66.667 2.48 0.00 45.77 4.18
2017 5669 1.880819 TTAGTCCCGAGCCACGAACC 61.881 60.000 2.48 0.00 45.77 3.62
2018 5670 0.037975 TTTAGTCCCGAGCCACGAAC 60.038 55.000 2.48 1.47 45.77 3.95
2019 5671 0.245539 CTTTAGTCCCGAGCCACGAA 59.754 55.000 2.48 0.00 45.77 3.85
2020 5672 1.601419 CCTTTAGTCCCGAGCCACGA 61.601 60.000 2.48 0.00 45.77 4.35
2021 5673 1.153628 CCTTTAGTCCCGAGCCACG 60.154 63.158 0.00 0.00 42.18 4.94
2022 5674 1.221021 CCCTTTAGTCCCGAGCCAC 59.779 63.158 0.00 0.00 0.00 5.01
2023 5675 0.326238 ATCCCTTTAGTCCCGAGCCA 60.326 55.000 0.00 0.00 0.00 4.75
2024 5676 0.106894 CATCCCTTTAGTCCCGAGCC 59.893 60.000 0.00 0.00 0.00 4.70
2025 5677 0.106894 CCATCCCTTTAGTCCCGAGC 59.893 60.000 0.00 0.00 0.00 5.03
2026 5678 1.139058 CACCATCCCTTTAGTCCCGAG 59.861 57.143 0.00 0.00 0.00 4.63
2027 5679 1.200519 CACCATCCCTTTAGTCCCGA 58.799 55.000 0.00 0.00 0.00 5.14
2028 5680 0.180406 CCACCATCCCTTTAGTCCCG 59.820 60.000 0.00 0.00 0.00 5.14
2029 5681 0.106669 GCCACCATCCCTTTAGTCCC 60.107 60.000 0.00 0.00 0.00 4.46
2030 5682 0.623723 TGCCACCATCCCTTTAGTCC 59.376 55.000 0.00 0.00 0.00 3.85
2031 5683 1.408822 CCTGCCACCATCCCTTTAGTC 60.409 57.143 0.00 0.00 0.00 2.59
2032 5684 0.625849 CCTGCCACCATCCCTTTAGT 59.374 55.000 0.00 0.00 0.00 2.24
2033 5685 0.753111 GCCTGCCACCATCCCTTTAG 60.753 60.000 0.00 0.00 0.00 1.85
2034 5686 1.214305 AGCCTGCCACCATCCCTTTA 61.214 55.000 0.00 0.00 0.00 1.85
2035 5687 2.037847 GCCTGCCACCATCCCTTT 59.962 61.111 0.00 0.00 0.00 3.11
2036 5688 2.943265 AGCCTGCCACCATCCCTT 60.943 61.111 0.00 0.00 0.00 3.95
2037 5689 3.736224 CAGCCTGCCACCATCCCT 61.736 66.667 0.00 0.00 0.00 4.20
2038 5690 4.828296 CCAGCCTGCCACCATCCC 62.828 72.222 0.00 0.00 0.00 3.85
2039 5691 4.052518 ACCAGCCTGCCACCATCC 62.053 66.667 0.00 0.00 0.00 3.51
2040 5692 2.753043 CACCAGCCTGCCACCATC 60.753 66.667 0.00 0.00 0.00 3.51
2041 5693 3.574074 GACACCAGCCTGCCACCAT 62.574 63.158 0.00 0.00 0.00 3.55
2042 5694 4.269523 GACACCAGCCTGCCACCA 62.270 66.667 0.00 0.00 0.00 4.17
2043 5695 4.269523 TGACACCAGCCTGCCACC 62.270 66.667 0.00 0.00 0.00 4.61
2044 5696 2.670934 CTGACACCAGCCTGCCAC 60.671 66.667 0.00 0.00 33.07 5.01
2045 5697 3.957586 CCTGACACCAGCCTGCCA 61.958 66.667 0.00 0.00 39.07 4.92
2047 5699 4.341783 AGCCTGACACCAGCCTGC 62.342 66.667 0.00 0.00 39.07 4.85
2048 5700 2.359602 CAGCCTGACACCAGCCTG 60.360 66.667 0.00 0.00 39.15 4.85
2049 5701 3.644606 CCAGCCTGACACCAGCCT 61.645 66.667 0.00 0.00 39.07 4.58
2050 5702 4.729918 CCCAGCCTGACACCAGCC 62.730 72.222 0.00 0.00 39.07 4.85
2051 5703 4.729918 CCCCAGCCTGACACCAGC 62.730 72.222 0.00 0.00 39.07 4.85
2052 5704 4.729918 GCCCCAGCCTGACACCAG 62.730 72.222 0.00 0.00 40.09 4.00
2067 5719 2.211468 CTAAAGGGACTGGTGGGGCC 62.211 65.000 0.00 0.00 40.86 5.80
2068 5720 1.303282 CTAAAGGGACTGGTGGGGC 59.697 63.158 0.00 0.00 40.86 5.80
2069 5721 0.618981 GACTAAAGGGACTGGTGGGG 59.381 60.000 0.00 0.00 40.86 4.96
2070 5722 0.618981 GGACTAAAGGGACTGGTGGG 59.381 60.000 0.00 0.00 40.86 4.61
2071 5723 0.618981 GGGACTAAAGGGACTGGTGG 59.381 60.000 0.00 0.00 40.86 4.61
2072 5724 0.249398 CGGGACTAAAGGGACTGGTG 59.751 60.000 0.00 0.00 40.86 4.17
2073 5725 0.908180 CCGGGACTAAAGGGACTGGT 60.908 60.000 0.00 0.00 40.86 4.00
2074 5726 0.908180 ACCGGGACTAAAGGGACTGG 60.908 60.000 6.32 0.00 40.86 4.00
2075 5727 0.981943 AACCGGGACTAAAGGGACTG 59.018 55.000 6.32 0.00 40.86 3.51
2077 5729 0.108472 CGAACCGGGACTAAAGGGAC 60.108 60.000 6.32 0.00 0.00 4.46
2078 5730 0.542702 ACGAACCGGGACTAAAGGGA 60.543 55.000 6.32 0.00 0.00 4.20
2079 5731 0.390735 CACGAACCGGGACTAAAGGG 60.391 60.000 6.32 0.00 28.17 3.95
2080 5732 0.390735 CCACGAACCGGGACTAAAGG 60.391 60.000 6.32 0.00 28.17 3.11
2081 5733 1.017701 GCCACGAACCGGGACTAAAG 61.018 60.000 6.32 0.00 28.17 1.85
2082 5734 1.004679 GCCACGAACCGGGACTAAA 60.005 57.895 6.32 0.00 28.17 1.85
2083 5735 2.658422 GCCACGAACCGGGACTAA 59.342 61.111 6.32 0.00 28.17 2.24
2084 5736 3.384532 GGCCACGAACCGGGACTA 61.385 66.667 6.32 0.00 28.17 2.59
2088 5740 4.958897 TTTGGGCCACGAACCGGG 62.959 66.667 5.23 0.00 0.00 5.73
2089 5741 3.666253 GTTTGGGCCACGAACCGG 61.666 66.667 5.23 0.00 37.48 5.28
2092 5744 3.666253 CCGGTTTGGGCCACGAAC 61.666 66.667 15.74 13.75 41.86 3.95
2093 5745 2.815945 TACCGGTTTGGGCCACGAA 61.816 57.895 15.04 1.26 44.64 3.85
2094 5746 3.240011 TACCGGTTTGGGCCACGA 61.240 61.111 15.04 0.39 44.64 4.35
2095 5747 2.169937 TAGTACCGGTTTGGGCCACG 62.170 60.000 15.04 6.93 44.64 4.94
2096 5748 0.392060 CTAGTACCGGTTTGGGCCAC 60.392 60.000 15.04 1.99 44.64 5.01
2097 5749 0.544833 TCTAGTACCGGTTTGGGCCA 60.545 55.000 15.04 0.00 44.64 5.36
2098 5750 0.177373 CTCTAGTACCGGTTTGGGCC 59.823 60.000 15.04 0.00 44.64 5.80
2099 5751 0.177373 CCTCTAGTACCGGTTTGGGC 59.823 60.000 15.04 0.00 44.64 5.36
2100 5752 0.177373 GCCTCTAGTACCGGTTTGGG 59.823 60.000 15.04 8.34 44.64 4.12
2101 5753 1.136500 GAGCCTCTAGTACCGGTTTGG 59.864 57.143 15.04 3.81 46.41 3.28
2102 5754 1.822990 TGAGCCTCTAGTACCGGTTTG 59.177 52.381 15.04 0.00 0.00 2.93
2103 5755 1.823610 GTGAGCCTCTAGTACCGGTTT 59.176 52.381 15.04 4.12 0.00 3.27
2104 5756 1.472188 GTGAGCCTCTAGTACCGGTT 58.528 55.000 15.04 0.00 0.00 4.44
2105 5757 0.395448 GGTGAGCCTCTAGTACCGGT 60.395 60.000 13.98 13.98 0.00 5.28
2106 5758 0.106619 AGGTGAGCCTCTAGTACCGG 60.107 60.000 0.00 0.00 42.67 5.28
2107 5759 1.765230 AAGGTGAGCCTCTAGTACCG 58.235 55.000 0.00 0.00 46.33 4.02
2108 5760 4.279982 ACTAAAGGTGAGCCTCTAGTACC 58.720 47.826 0.00 0.00 44.55 3.34
2109 5761 4.338964 GGACTAAAGGTGAGCCTCTAGTAC 59.661 50.000 0.16 0.00 45.92 2.73
2110 5762 4.534797 GGACTAAAGGTGAGCCTCTAGTA 58.465 47.826 0.16 0.00 45.92 1.82
2112 5764 2.696187 GGGACTAAAGGTGAGCCTCTAG 59.304 54.545 0.00 0.00 46.33 2.43
2113 5765 2.748388 GGGACTAAAGGTGAGCCTCTA 58.252 52.381 0.00 0.00 46.33 2.43
2114 5766 1.574263 GGGACTAAAGGTGAGCCTCT 58.426 55.000 0.00 0.00 46.33 3.69
2115 5767 0.175989 CGGGACTAAAGGTGAGCCTC 59.824 60.000 0.00 0.00 46.33 4.70
2117 5769 1.221021 CCGGGACTAAAGGTGAGCC 59.779 63.158 0.00 0.00 0.00 4.70
2118 5770 0.323957 AACCGGGACTAAAGGTGAGC 59.676 55.000 6.32 0.00 38.44 4.26
2119 5771 2.224450 ACAAACCGGGACTAAAGGTGAG 60.224 50.000 6.32 0.00 38.44 3.51
2120 5772 1.770061 ACAAACCGGGACTAAAGGTGA 59.230 47.619 6.32 0.00 38.44 4.02
2121 5773 1.877443 CACAAACCGGGACTAAAGGTG 59.123 52.381 6.32 0.00 38.44 4.00
2122 5774 1.491754 ACACAAACCGGGACTAAAGGT 59.508 47.619 6.32 0.00 40.50 3.50
2123 5775 2.148768 GACACAAACCGGGACTAAAGG 58.851 52.381 6.32 0.00 0.00 3.11
2124 5776 2.841215 TGACACAAACCGGGACTAAAG 58.159 47.619 6.32 0.00 0.00 1.85
2125 5777 3.142951 CATGACACAAACCGGGACTAAA 58.857 45.455 6.32 0.00 0.00 1.85
2126 5778 2.369203 TCATGACACAAACCGGGACTAA 59.631 45.455 6.32 0.00 0.00 2.24
2127 5779 1.972075 TCATGACACAAACCGGGACTA 59.028 47.619 6.32 0.00 0.00 2.59
2128 5780 0.762418 TCATGACACAAACCGGGACT 59.238 50.000 6.32 0.00 0.00 3.85
2129 5781 1.265905 GTTCATGACACAAACCGGGAC 59.734 52.381 6.32 0.00 0.00 4.46
2130 5782 1.600023 GTTCATGACACAAACCGGGA 58.400 50.000 6.32 0.00 0.00 5.14
2131 5783 0.596082 GGTTCATGACACAAACCGGG 59.404 55.000 6.32 0.00 33.68 5.73
2132 5784 1.535462 GAGGTTCATGACACAAACCGG 59.465 52.381 0.00 0.00 45.70 5.28
2133 5785 2.032030 GTGAGGTTCATGACACAAACCG 60.032 50.000 12.75 0.00 45.70 4.44
2134 5786 2.293399 GGTGAGGTTCATGACACAAACC 59.707 50.000 14.12 10.22 42.27 3.27
2135 5787 3.214328 AGGTGAGGTTCATGACACAAAC 58.786 45.455 14.12 1.81 35.33 2.93
2136 5788 3.576078 AGGTGAGGTTCATGACACAAA 57.424 42.857 14.12 0.00 35.33 2.83
2137 5789 3.576078 AAGGTGAGGTTCATGACACAA 57.424 42.857 14.12 0.00 35.33 3.33
2138 5790 3.576078 AAAGGTGAGGTTCATGACACA 57.424 42.857 14.12 0.00 35.33 3.72
2139 5791 4.642429 ACTAAAGGTGAGGTTCATGACAC 58.358 43.478 0.00 0.00 0.00 3.67
2140 5792 4.262894 GGACTAAAGGTGAGGTTCATGACA 60.263 45.833 0.00 0.00 0.00 3.58
2141 5793 4.020128 AGGACTAAAGGTGAGGTTCATGAC 60.020 45.833 0.00 0.00 0.00 3.06
2142 5794 4.020218 CAGGACTAAAGGTGAGGTTCATGA 60.020 45.833 0.00 0.00 0.00 3.07
2143 5795 4.020218 TCAGGACTAAAGGTGAGGTTCATG 60.020 45.833 0.00 0.00 0.00 3.07
2144 5796 4.168101 TCAGGACTAAAGGTGAGGTTCAT 58.832 43.478 0.00 0.00 0.00 2.57
2145 5797 3.583228 TCAGGACTAAAGGTGAGGTTCA 58.417 45.455 0.00 0.00 0.00 3.18
2149 5801 4.697352 CACAAATCAGGACTAAAGGTGAGG 59.303 45.833 0.00 0.00 0.00 3.86
2166 5818 4.104383 AGTCCTGGTTCATGACACAAAT 57.896 40.909 0.00 0.00 32.77 2.32
2212 5867 2.678580 TCGATCGTGGGCTGGACA 60.679 61.111 15.94 0.00 0.00 4.02
2259 5922 1.004862 GAAGAACAAAGGGGAGAGGGG 59.995 57.143 0.00 0.00 0.00 4.79
2260 5923 1.004862 GGAAGAACAAAGGGGAGAGGG 59.995 57.143 0.00 0.00 0.00 4.30
2261 5924 1.004862 GGGAAGAACAAAGGGGAGAGG 59.995 57.143 0.00 0.00 0.00 3.69
2262 5925 1.705186 TGGGAAGAACAAAGGGGAGAG 59.295 52.381 0.00 0.00 0.00 3.20
2299 5963 4.530875 TGACAAATTTTGGGCAAAATGGT 58.469 34.783 13.42 1.27 46.76 3.55
2300 5964 5.298777 TCTTGACAAATTTTGGGCAAAATGG 59.701 36.000 13.42 0.00 46.76 3.16
2336 6000 5.885230 TTGTGATCACTTGGATGAATGAC 57.115 39.130 25.55 0.00 36.00 3.06
2337 6001 6.434965 ACATTTGTGATCACTTGGATGAATGA 59.565 34.615 25.55 0.00 36.00 2.57
2360 6024 9.677567 GAGATAAAAATGACAAAGTTGCTAACA 57.322 29.630 0.00 0.00 0.00 2.41
2410 6074 9.197694 CCACAAATCACTATACTTATAGAGCAC 57.802 37.037 9.79 0.00 38.30 4.40
2599 6265 1.807142 GAACAAGAGGCTTACCACAGC 59.193 52.381 0.00 0.00 39.06 4.40
2601 6267 3.857157 AAGAACAAGAGGCTTACCACA 57.143 42.857 0.00 0.00 39.06 4.17
2678 6347 7.420002 ACAAACAACTTACGGGTAAGAAAATC 58.580 34.615 21.83 0.00 43.90 2.17
2694 6364 6.892658 TGCCACTATGAATAACAAACAACT 57.107 33.333 0.00 0.00 0.00 3.16
2707 6378 5.769662 GGATATCAAAACCATGCCACTATGA 59.230 40.000 4.83 0.00 0.00 2.15
2743 6414 4.158949 TCTGAATCATAAACCGGACGAGAA 59.841 41.667 9.46 0.00 0.00 2.87
2744 6415 3.697542 TCTGAATCATAAACCGGACGAGA 59.302 43.478 9.46 0.00 0.00 4.04
2780 6451 9.828852 ACGAAATGCAACGAATAGTTATAAAAA 57.171 25.926 15.81 0.00 42.02 1.94
2794 6465 4.215201 TGTCATAAACACGAAATGCAACG 58.785 39.130 9.16 9.16 31.20 4.10
2845 6517 6.924060 CGGTTCACATACCTCCTAGATAAAAG 59.076 42.308 0.00 0.00 35.97 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.