Multiple sequence alignment - TraesCS3B01G057500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G057500 chr3B 100.000 3081 0 0 1 3081 29998317 29995237 0.000000e+00 5690.0
1 TraesCS3B01G057500 chr3B 97.614 1299 30 1 1073 2371 29460286 29458989 0.000000e+00 2226.0
2 TraesCS3B01G057500 chr3B 87.443 1744 177 19 648 2370 75523373 75521651 0.000000e+00 1969.0
3 TraesCS3B01G057500 chr3B 86.832 1572 189 13 804 2370 29781943 29783501 0.000000e+00 1740.0
4 TraesCS3B01G057500 chr3B 86.505 1571 191 15 806 2370 30207332 30208887 0.000000e+00 1707.0
5 TraesCS3B01G057500 chr3B 92.485 652 36 4 2440 3081 29458672 29458024 0.000000e+00 920.0
6 TraesCS3B01G057500 chr3B 96.109 257 10 0 137 393 29477833 29477577 1.320000e-113 420.0
7 TraesCS3B01G057500 chr3B 96.203 237 8 1 416 651 29477301 29477065 1.340000e-103 387.0
8 TraesCS3B01G057500 chr3B 100.000 136 0 0 1 136 345412555 345412690 5.100000e-63 252.0
9 TraesCS3B01G057500 chr3B 78.571 154 24 6 453 604 29627996 29628142 3.270000e-15 93.5
10 TraesCS3B01G057500 chr3D 95.396 1694 76 1 648 2341 18845912 18847603 0.000000e+00 2695.0
11 TraesCS3B01G057500 chr3D 87.863 1549 150 24 695 2220 18908536 18910069 0.000000e+00 1784.0
12 TraesCS3B01G057500 chr3D 93.249 237 15 1 416 651 18845640 18845876 6.320000e-92 348.0
13 TraesCS3B01G057500 chr3D 84.490 245 32 3 2122 2366 18953894 18954132 1.430000e-58 237.0
14 TraesCS3B01G057500 chr3D 80.723 166 29 3 441 604 18742077 18742241 3.230000e-25 126.0
15 TraesCS3B01G057500 chr3D 78.947 152 30 1 453 604 18908223 18908372 5.440000e-18 102.0
16 TraesCS3B01G057500 chr3A 90.143 1745 131 9 651 2370 26232936 26234664 0.000000e+00 2231.0
17 TraesCS3B01G057500 chr3A 85.977 1576 203 13 789 2358 26481447 26483010 0.000000e+00 1670.0
18 TraesCS3B01G057500 chr3A 85.780 436 42 7 208 625 26232424 26232857 7.840000e-121 444.0
19 TraesCS3B01G057500 chr3A 93.519 108 7 0 2742 2849 733630198 733630091 8.840000e-36 161.0
20 TraesCS3B01G057500 chr3A 81.379 145 26 1 460 604 26010041 26009898 1.940000e-22 117.0
21 TraesCS3B01G057500 chr3A 81.690 142 25 1 464 604 26205170 26205311 1.940000e-22 117.0
22 TraesCS3B01G057500 chr7B 86.781 1581 185 11 796 2366 64321603 64323169 0.000000e+00 1740.0
23 TraesCS3B01G057500 chr2A 99.310 145 1 0 1 145 191936415 191936271 2.360000e-66 263.0
24 TraesCS3B01G057500 chr2A 90.741 108 10 0 2742 2849 689803320 689803427 8.900000e-31 145.0
25 TraesCS3B01G057500 chr1A 99.301 143 0 1 1 143 510453222 510453081 1.100000e-64 257.0
26 TraesCS3B01G057500 chr1A 99.270 137 1 0 1 137 298560877 298560741 6.600000e-62 248.0
27 TraesCS3B01G057500 chr5A 100.000 136 0 0 1 136 43260272 43260137 5.100000e-63 252.0
28 TraesCS3B01G057500 chr4A 100.000 136 0 0 1 136 446616221 446616086 5.100000e-63 252.0
29 TraesCS3B01G057500 chr4A 100.000 136 0 0 1 136 473499641 473499506 5.100000e-63 252.0
30 TraesCS3B01G057500 chr4A 93.519 108 7 0 2742 2849 598785961 598785854 8.840000e-36 161.0
31 TraesCS3B01G057500 chr6A 98.571 140 2 0 1 140 73459047 73458908 6.600000e-62 248.0
32 TraesCS3B01G057500 chr4B 98.571 140 2 0 1 140 432574608 432574469 6.600000e-62 248.0
33 TraesCS3B01G057500 chr4D 91.667 108 9 0 2742 2849 375433189 375433296 1.910000e-32 150.0
34 TraesCS3B01G057500 chr7D 90.741 108 10 0 2742 2849 638560305 638560412 8.900000e-31 145.0
35 TraesCS3B01G057500 chr6D 90.741 108 10 0 2742 2849 19345789 19345896 8.900000e-31 145.0
36 TraesCS3B01G057500 chr2B 90.741 108 10 0 2742 2849 42769477 42769370 8.900000e-31 145.0
37 TraesCS3B01G057500 chr2B 90.741 108 10 0 2742 2849 107380906 107381013 8.900000e-31 145.0
38 TraesCS3B01G057500 chr5D 85.185 135 19 1 2455 2589 525228956 525229089 1.490000e-28 137.0
39 TraesCS3B01G057500 chrUn 80.263 152 24 4 453 604 37328119 37328264 3.250000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G057500 chr3B 29995237 29998317 3080 True 5690.0 5690 100.0000 1 3081 1 chr3B.!!$R1 3080
1 TraesCS3B01G057500 chr3B 75521651 75523373 1722 True 1969.0 1969 87.4430 648 2370 1 chr3B.!!$R2 1722
2 TraesCS3B01G057500 chr3B 29781943 29783501 1558 False 1740.0 1740 86.8320 804 2370 1 chr3B.!!$F2 1566
3 TraesCS3B01G057500 chr3B 30207332 30208887 1555 False 1707.0 1707 86.5050 806 2370 1 chr3B.!!$F3 1564
4 TraesCS3B01G057500 chr3B 29458024 29460286 2262 True 1573.0 2226 95.0495 1073 3081 2 chr3B.!!$R3 2008
5 TraesCS3B01G057500 chr3B 29477065 29477833 768 True 403.5 420 96.1560 137 651 2 chr3B.!!$R4 514
6 TraesCS3B01G057500 chr3D 18845640 18847603 1963 False 1521.5 2695 94.3225 416 2341 2 chr3D.!!$F3 1925
7 TraesCS3B01G057500 chr3D 18908223 18910069 1846 False 943.0 1784 83.4050 453 2220 2 chr3D.!!$F4 1767
8 TraesCS3B01G057500 chr3A 26481447 26483010 1563 False 1670.0 1670 85.9770 789 2358 1 chr3A.!!$F2 1569
9 TraesCS3B01G057500 chr3A 26232424 26234664 2240 False 1337.5 2231 87.9615 208 2370 2 chr3A.!!$F3 2162
10 TraesCS3B01G057500 chr7B 64321603 64323169 1566 False 1740.0 1740 86.7810 796 2366 1 chr7B.!!$F1 1570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.326595 TGTGTGTGTGTGGACTTGGT 59.673 50.0 0.0 0.0 0.00 3.67 F
74 75 0.326595 TGTGTGTGTGGACTTGGTGT 59.673 50.0 0.0 0.0 0.00 4.16 F
78 79 0.329931 TGTGTGGACTTGGTGTGGTT 59.670 50.0 0.0 0.0 0.00 3.67 F
80 81 0.329931 TGTGGACTTGGTGTGGTTGT 59.670 50.0 0.0 0.0 0.00 3.32 F
99 100 0.392461 TATGTCCTTTGGCGGTCTGC 60.392 55.0 0.0 0.0 45.38 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1112 1491 1.423921 ACTCATCCCCGTTTCCTTTGT 59.576 47.619 0.00 0.00 0.00 2.83 R
1318 1698 1.934589 CCACGAGCAATACCGATTGA 58.065 50.000 1.88 0.00 44.59 2.57 R
1374 1754 3.476552 GGGCTTGATATCGAAATGGACA 58.523 45.455 0.00 0.00 0.00 4.02 R
2071 2452 3.581101 AGGCCTATCTGCTCAATGAGTA 58.419 45.455 1.29 6.49 31.39 2.59 R
2109 2490 7.581213 TCTAACAGTGTTGGAAATGAATGTT 57.419 32.000 18.63 0.00 34.91 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.488790 CTTGTTGAGCTGTGCCCT 57.511 55.556 0.00 0.00 0.00 5.19
18 19 2.251600 CTTGTTGAGCTGTGCCCTC 58.748 57.895 0.00 0.00 0.00 4.30
19 20 0.535780 CTTGTTGAGCTGTGCCCTCA 60.536 55.000 0.00 0.00 37.54 3.86
20 21 0.535780 TTGTTGAGCTGTGCCCTCAG 60.536 55.000 0.00 0.00 40.16 3.35
32 33 1.673168 GCCCTCAGCAGAACCTTATG 58.327 55.000 0.00 0.00 42.97 1.90
33 34 1.210478 GCCCTCAGCAGAACCTTATGA 59.790 52.381 0.00 0.00 42.97 2.15
34 35 2.911484 CCCTCAGCAGAACCTTATGAC 58.089 52.381 0.00 0.00 0.00 3.06
35 36 2.503356 CCCTCAGCAGAACCTTATGACT 59.497 50.000 0.00 0.00 0.00 3.41
36 37 3.054802 CCCTCAGCAGAACCTTATGACTT 60.055 47.826 0.00 0.00 0.00 3.01
37 38 4.566488 CCCTCAGCAGAACCTTATGACTTT 60.566 45.833 0.00 0.00 0.00 2.66
38 39 4.394300 CCTCAGCAGAACCTTATGACTTTG 59.606 45.833 0.00 0.00 0.00 2.77
39 40 4.973168 TCAGCAGAACCTTATGACTTTGT 58.027 39.130 0.00 0.00 0.00 2.83
40 41 5.376625 TCAGCAGAACCTTATGACTTTGTT 58.623 37.500 0.00 0.00 0.00 2.83
41 42 5.239306 TCAGCAGAACCTTATGACTTTGTTG 59.761 40.000 0.00 0.00 0.00 3.33
42 43 5.009010 CAGCAGAACCTTATGACTTTGTTGT 59.991 40.000 0.00 0.00 0.00 3.32
43 44 5.009010 AGCAGAACCTTATGACTTTGTTGTG 59.991 40.000 0.00 0.00 34.44 3.33
44 45 5.762045 CAGAACCTTATGACTTTGTTGTGG 58.238 41.667 0.00 0.00 0.00 4.17
45 46 5.299279 CAGAACCTTATGACTTTGTTGTGGT 59.701 40.000 0.00 0.00 0.00 4.16
46 47 6.485313 CAGAACCTTATGACTTTGTTGTGGTA 59.515 38.462 0.00 0.00 0.00 3.25
47 48 6.485648 AGAACCTTATGACTTTGTTGTGGTAC 59.514 38.462 0.00 0.00 0.00 3.34
48 49 5.937111 ACCTTATGACTTTGTTGTGGTACT 58.063 37.500 0.00 0.00 0.00 2.73
49 50 6.362248 ACCTTATGACTTTGTTGTGGTACTT 58.638 36.000 0.00 0.00 0.00 2.24
50 51 6.262273 ACCTTATGACTTTGTTGTGGTACTTG 59.738 38.462 0.00 0.00 0.00 3.16
51 52 6.293955 CCTTATGACTTTGTTGTGGTACTTGG 60.294 42.308 0.00 0.00 0.00 3.61
52 53 3.283751 TGACTTTGTTGTGGTACTTGGG 58.716 45.455 0.00 0.00 0.00 4.12
53 54 3.284617 GACTTTGTTGTGGTACTTGGGT 58.715 45.455 0.00 0.00 0.00 4.51
54 55 3.020984 ACTTTGTTGTGGTACTTGGGTG 58.979 45.455 0.00 0.00 0.00 4.61
55 56 2.810870 TTGTTGTGGTACTTGGGTGT 57.189 45.000 0.00 0.00 0.00 4.16
56 57 2.045561 TGTTGTGGTACTTGGGTGTG 57.954 50.000 0.00 0.00 0.00 3.82
57 58 1.282447 TGTTGTGGTACTTGGGTGTGT 59.718 47.619 0.00 0.00 0.00 3.72
58 59 1.673920 GTTGTGGTACTTGGGTGTGTG 59.326 52.381 0.00 0.00 0.00 3.82
59 60 0.913205 TGTGGTACTTGGGTGTGTGT 59.087 50.000 0.00 0.00 0.00 3.72
60 61 1.305201 GTGGTACTTGGGTGTGTGTG 58.695 55.000 0.00 0.00 0.00 3.82
61 62 0.913205 TGGTACTTGGGTGTGTGTGT 59.087 50.000 0.00 0.00 0.00 3.72
62 63 1.305201 GGTACTTGGGTGTGTGTGTG 58.695 55.000 0.00 0.00 0.00 3.82
63 64 1.407712 GGTACTTGGGTGTGTGTGTGT 60.408 52.381 0.00 0.00 0.00 3.72
64 65 1.668751 GTACTTGGGTGTGTGTGTGTG 59.331 52.381 0.00 0.00 0.00 3.82
65 66 0.679640 ACTTGGGTGTGTGTGTGTGG 60.680 55.000 0.00 0.00 0.00 4.17
66 67 0.393673 CTTGGGTGTGTGTGTGTGGA 60.394 55.000 0.00 0.00 0.00 4.02
67 68 0.678366 TTGGGTGTGTGTGTGTGGAC 60.678 55.000 0.00 0.00 0.00 4.02
68 69 1.223487 GGGTGTGTGTGTGTGGACT 59.777 57.895 0.00 0.00 0.00 3.85
69 70 0.393808 GGGTGTGTGTGTGTGGACTT 60.394 55.000 0.00 0.00 0.00 3.01
70 71 0.732571 GGTGTGTGTGTGTGGACTTG 59.267 55.000 0.00 0.00 0.00 3.16
71 72 0.732571 GTGTGTGTGTGTGGACTTGG 59.267 55.000 0.00 0.00 0.00 3.61
72 73 0.326595 TGTGTGTGTGTGGACTTGGT 59.673 50.000 0.00 0.00 0.00 3.67
73 74 0.732571 GTGTGTGTGTGGACTTGGTG 59.267 55.000 0.00 0.00 0.00 4.17
74 75 0.326595 TGTGTGTGTGGACTTGGTGT 59.673 50.000 0.00 0.00 0.00 4.16
75 76 0.732571 GTGTGTGTGGACTTGGTGTG 59.267 55.000 0.00 0.00 0.00 3.82
76 77 0.393673 TGTGTGTGGACTTGGTGTGG 60.394 55.000 0.00 0.00 0.00 4.17
77 78 0.393808 GTGTGTGGACTTGGTGTGGT 60.394 55.000 0.00 0.00 0.00 4.16
78 79 0.329931 TGTGTGGACTTGGTGTGGTT 59.670 50.000 0.00 0.00 0.00 3.67
79 80 0.738389 GTGTGGACTTGGTGTGGTTG 59.262 55.000 0.00 0.00 0.00 3.77
80 81 0.329931 TGTGGACTTGGTGTGGTTGT 59.670 50.000 0.00 0.00 0.00 3.32
81 82 1.560146 TGTGGACTTGGTGTGGTTGTA 59.440 47.619 0.00 0.00 0.00 2.41
82 83 2.173782 TGTGGACTTGGTGTGGTTGTAT 59.826 45.455 0.00 0.00 0.00 2.29
83 84 2.552315 GTGGACTTGGTGTGGTTGTATG 59.448 50.000 0.00 0.00 0.00 2.39
84 85 2.173782 TGGACTTGGTGTGGTTGTATGT 59.826 45.455 0.00 0.00 0.00 2.29
85 86 2.812011 GGACTTGGTGTGGTTGTATGTC 59.188 50.000 0.00 0.00 0.00 3.06
86 87 2.812011 GACTTGGTGTGGTTGTATGTCC 59.188 50.000 0.00 0.00 0.00 4.02
87 88 2.441750 ACTTGGTGTGGTTGTATGTCCT 59.558 45.455 0.00 0.00 0.00 3.85
88 89 3.117663 ACTTGGTGTGGTTGTATGTCCTT 60.118 43.478 0.00 0.00 0.00 3.36
89 90 3.586470 TGGTGTGGTTGTATGTCCTTT 57.414 42.857 0.00 0.00 0.00 3.11
90 91 3.218453 TGGTGTGGTTGTATGTCCTTTG 58.782 45.455 0.00 0.00 0.00 2.77
91 92 2.556622 GGTGTGGTTGTATGTCCTTTGG 59.443 50.000 0.00 0.00 0.00 3.28
92 93 2.030274 GTGTGGTTGTATGTCCTTTGGC 60.030 50.000 0.00 0.00 0.00 4.52
93 94 1.199097 GTGGTTGTATGTCCTTTGGCG 59.801 52.381 0.00 0.00 0.00 5.69
94 95 0.808755 GGTTGTATGTCCTTTGGCGG 59.191 55.000 0.00 0.00 0.00 6.13
95 96 1.530323 GTTGTATGTCCTTTGGCGGT 58.470 50.000 0.00 0.00 0.00 5.68
96 97 1.467342 GTTGTATGTCCTTTGGCGGTC 59.533 52.381 0.00 0.00 0.00 4.79
97 98 0.981183 TGTATGTCCTTTGGCGGTCT 59.019 50.000 0.00 0.00 0.00 3.85
98 99 1.338674 TGTATGTCCTTTGGCGGTCTG 60.339 52.381 0.00 0.00 0.00 3.51
99 100 0.392461 TATGTCCTTTGGCGGTCTGC 60.392 55.000 0.00 0.00 45.38 4.26
100 101 2.032681 GTCCTTTGGCGGTCTGCT 59.967 61.111 3.10 0.00 45.43 4.24
101 102 1.600916 GTCCTTTGGCGGTCTGCTT 60.601 57.895 3.10 0.00 45.43 3.91
102 103 1.150536 TCCTTTGGCGGTCTGCTTT 59.849 52.632 3.10 0.00 45.43 3.51
103 104 0.398696 TCCTTTGGCGGTCTGCTTTA 59.601 50.000 3.10 0.00 45.43 1.85
104 105 1.004277 TCCTTTGGCGGTCTGCTTTAT 59.996 47.619 3.10 0.00 45.43 1.40
105 106 1.401905 CCTTTGGCGGTCTGCTTTATC 59.598 52.381 3.10 0.00 45.43 1.75
106 107 2.359900 CTTTGGCGGTCTGCTTTATCT 58.640 47.619 3.10 0.00 45.43 1.98
107 108 3.531538 CTTTGGCGGTCTGCTTTATCTA 58.468 45.455 3.10 0.00 45.43 1.98
108 109 3.838244 TTGGCGGTCTGCTTTATCTAT 57.162 42.857 3.10 0.00 45.43 1.98
109 110 4.948341 TTGGCGGTCTGCTTTATCTATA 57.052 40.909 3.10 0.00 45.43 1.31
110 111 4.948341 TGGCGGTCTGCTTTATCTATAA 57.052 40.909 3.10 0.00 45.43 0.98
111 112 5.284861 TGGCGGTCTGCTTTATCTATAAA 57.715 39.130 3.10 0.00 45.43 1.40
120 121 3.921677 CTTTATCTATAAAGCGGGGCGA 58.078 45.455 9.01 0.00 41.69 5.54
121 122 4.312443 CTTTATCTATAAAGCGGGGCGAA 58.688 43.478 9.01 0.00 41.69 4.70
122 123 2.922740 ATCTATAAAGCGGGGCGAAA 57.077 45.000 0.00 0.00 0.00 3.46
123 124 2.234300 TCTATAAAGCGGGGCGAAAG 57.766 50.000 0.00 0.00 0.00 2.62
164 165 3.135167 TCTTCCCTTTTTACCTCACACGT 59.865 43.478 0.00 0.00 0.00 4.49
183 184 3.150767 CGTAAAATTTGGGGGTCAGTGA 58.849 45.455 0.00 0.00 0.00 3.41
203 204 7.942341 TCAGTGAGACCATGTTAAAATTTACCT 59.058 33.333 0.00 0.00 0.00 3.08
243 244 5.987953 TCATGCATCTAACTGCTAATGACTC 59.012 40.000 0.00 0.00 42.75 3.36
268 269 5.770162 CCTCTGTCCCAAAATAACTGAAGTT 59.230 40.000 0.71 0.71 41.73 2.66
389 620 4.806247 GTGTAGTGAAGATCATGCTGGTAC 59.194 45.833 0.00 0.00 0.00 3.34
409 640 2.097466 ACAACGGACACTTGCAGAAAAG 59.903 45.455 0.00 0.00 0.00 2.27
411 642 2.213499 ACGGACACTTGCAGAAAAGAG 58.787 47.619 0.00 0.00 0.00 2.85
412 643 1.532868 CGGACACTTGCAGAAAAGAGG 59.467 52.381 0.00 0.00 0.00 3.69
625 900 8.478877 GCCATTTATATACCAGTAGCTCACTAT 58.521 37.037 0.00 0.00 34.98 2.12
683 1034 5.659048 GCTCTAAGCTTGTGCGTAATAAT 57.341 39.130 9.86 0.00 45.42 1.28
794 1146 8.507249 GCCTGGAAATCATTATGACTGTATTAC 58.493 37.037 0.00 0.00 0.00 1.89
827 1203 3.899980 TCCATCTCAGGTATGACATCAGG 59.100 47.826 0.00 0.00 0.00 3.86
832 1208 4.141158 TCTCAGGTATGACATCAGGAGCTA 60.141 45.833 0.00 0.00 0.00 3.32
849 1225 4.068599 GAGCTACAACCTTTCTCTTTGCT 58.931 43.478 0.00 0.00 0.00 3.91
876 1252 9.996554 TGTCTTTATGTGTTGATATGGTATAGG 57.003 33.333 0.00 0.00 0.00 2.57
885 1261 6.043938 TGTTGATATGGTATAGGAAGGGGAAC 59.956 42.308 0.00 0.00 0.00 3.62
921 1300 3.904339 TCCTTTCCAAGAAGACTAGCAGT 59.096 43.478 0.00 0.00 0.00 4.40
979 1358 2.024176 TGGATCGCTAGCTCCAAAAC 57.976 50.000 20.35 2.63 39.48 2.43
990 1369 5.175856 GCTAGCTCCAAAACGATACATGTAG 59.824 44.000 11.91 1.09 0.00 2.74
992 1371 5.488341 AGCTCCAAAACGATACATGTAGTT 58.512 37.500 11.91 8.07 0.00 2.24
993 1372 5.351465 AGCTCCAAAACGATACATGTAGTTG 59.649 40.000 11.91 9.56 0.00 3.16
1014 1393 7.210873 AGTTGGAGATAATGAAGATAACGTCC 58.789 38.462 0.00 0.00 0.00 4.79
1112 1491 4.761227 TGCTGTGAAATTCTTGCATGACTA 59.239 37.500 1.02 0.00 0.00 2.59
1318 1698 3.916035 TGGGAGAGGCTATATGCGATAT 58.084 45.455 0.00 0.00 44.05 1.63
1374 1754 5.694910 GCACCATAGCTGTAATACACGTATT 59.305 40.000 7.54 7.54 39.02 1.89
1494 1874 0.595095 GCAAGCTTTCAGTGACTGGG 59.405 55.000 13.33 4.91 31.51 4.45
2071 2452 3.941483 CAGAAATCCTACAACAATCGCCT 59.059 43.478 0.00 0.00 0.00 5.52
2109 2490 2.627699 GGCCTTGTGAATCAAAGAACCA 59.372 45.455 0.00 0.00 35.48 3.67
2271 2664 5.670792 TGACAACATCCTAAGTTACCGAT 57.329 39.130 0.00 0.00 0.00 4.18
2373 2767 3.674753 CCTTCTTGGCAGTAAATTTTGCG 59.325 43.478 8.39 0.00 41.17 4.85
2375 2769 2.295909 TCTTGGCAGTAAATTTTGCGCT 59.704 40.909 9.73 0.00 41.17 5.92
2376 2770 2.346099 TGGCAGTAAATTTTGCGCTC 57.654 45.000 9.73 0.00 41.17 5.03
2377 2771 1.885887 TGGCAGTAAATTTTGCGCTCT 59.114 42.857 9.73 0.00 41.17 4.09
2379 2773 3.504134 TGGCAGTAAATTTTGCGCTCTAA 59.496 39.130 9.73 0.00 41.17 2.10
2380 2774 4.098416 GGCAGTAAATTTTGCGCTCTAAG 58.902 43.478 9.73 0.00 41.17 2.18
2381 2775 4.379499 GGCAGTAAATTTTGCGCTCTAAGT 60.379 41.667 9.73 0.00 41.17 2.24
2383 2777 5.960105 GCAGTAAATTTTGCGCTCTAAGTAG 59.040 40.000 9.73 0.00 0.00 2.57
2385 2779 6.955963 CAGTAAATTTTGCGCTCTAAGTAGTG 59.044 38.462 9.73 4.21 0.00 2.74
2386 2780 5.941948 AAATTTTGCGCTCTAAGTAGTGT 57.058 34.783 9.73 0.00 0.00 3.55
2388 2782 5.941948 ATTTTGCGCTCTAAGTAGTGTTT 57.058 34.783 9.73 0.00 0.00 2.83
2389 2783 5.744666 TTTTGCGCTCTAAGTAGTGTTTT 57.255 34.783 9.73 0.00 0.00 2.43
2390 2784 4.725556 TTGCGCTCTAAGTAGTGTTTTG 57.274 40.909 9.73 0.00 0.00 2.44
2392 2786 3.064931 GCGCTCTAAGTAGTGTTTTGGT 58.935 45.455 0.00 0.00 0.00 3.67
2393 2787 3.497262 GCGCTCTAAGTAGTGTTTTGGTT 59.503 43.478 0.00 0.00 0.00 3.67
2394 2788 4.687483 GCGCTCTAAGTAGTGTTTTGGTTA 59.313 41.667 0.00 0.00 0.00 2.85
2395 2789 5.350640 GCGCTCTAAGTAGTGTTTTGGTTAT 59.649 40.000 0.00 0.00 0.00 1.89
2396 2790 6.455246 GCGCTCTAAGTAGTGTTTTGGTTATC 60.455 42.308 0.00 0.00 0.00 1.75
2397 2791 6.237490 CGCTCTAAGTAGTGTTTTGGTTATCG 60.237 42.308 0.00 0.00 0.00 2.92
2398 2792 6.810182 GCTCTAAGTAGTGTTTTGGTTATCGA 59.190 38.462 0.00 0.00 0.00 3.59
2399 2793 7.330208 GCTCTAAGTAGTGTTTTGGTTATCGAA 59.670 37.037 0.00 0.00 0.00 3.71
2400 2794 9.367444 CTCTAAGTAGTGTTTTGGTTATCGAAT 57.633 33.333 0.00 0.00 0.00 3.34
2401 2795 9.146984 TCTAAGTAGTGTTTTGGTTATCGAATG 57.853 33.333 0.00 0.00 0.00 2.67
2402 2796 6.737254 AGTAGTGTTTTGGTTATCGAATGG 57.263 37.500 0.00 0.00 0.00 3.16
2403 2797 5.646360 AGTAGTGTTTTGGTTATCGAATGGG 59.354 40.000 0.00 0.00 0.00 4.00
2404 2798 3.761752 AGTGTTTTGGTTATCGAATGGGG 59.238 43.478 0.00 0.00 0.00 4.96
2405 2799 3.093057 TGTTTTGGTTATCGAATGGGGG 58.907 45.455 0.00 0.00 0.00 5.40
2424 2818 3.676216 GGGGGCTGGTAAACGTTG 58.324 61.111 0.00 0.00 0.00 4.10
2425 2819 1.228337 GGGGGCTGGTAAACGTTGT 60.228 57.895 0.00 0.00 0.00 3.32
2426 2820 0.824595 GGGGGCTGGTAAACGTTGTT 60.825 55.000 0.00 0.00 0.00 2.83
2427 2821 1.545204 GGGGGCTGGTAAACGTTGTTA 60.545 52.381 0.00 0.00 0.00 2.41
2428 2822 1.536766 GGGGCTGGTAAACGTTGTTAC 59.463 52.381 0.00 1.03 33.91 2.50
2435 2829 3.942539 GTAAACGTTGTTACCACGGTT 57.057 42.857 15.99 15.99 40.11 4.44
2437 2831 3.942539 AAACGTTGTTACCACGGTTAC 57.057 42.857 10.48 0.00 34.86 2.50
2438 2832 1.864565 ACGTTGTTACCACGGTTACC 58.135 50.000 13.28 0.00 0.00 2.85
2448 3090 1.941975 CCACGGTTACCACGAAAGTTT 59.058 47.619 1.13 0.00 46.40 2.66
2638 3280 9.278978 TGTTAGTTCTCATGTTTTATACTTGCA 57.721 29.630 0.00 0.00 33.21 4.08
2834 3476 2.668457 CTCAGTGGAACATTGTCTACGC 59.332 50.000 0.00 0.00 46.52 4.42
2953 3595 3.119388 ACACACATTGCCTTGTATCATGC 60.119 43.478 0.00 0.00 0.00 4.06
2986 3638 1.077716 GCCCACGGCTTACTTCCAT 60.078 57.895 0.00 0.00 46.69 3.41
3066 3718 1.304134 TACGCAGTGGAGCCAGAGA 60.304 57.895 0.00 0.00 45.73 3.10
3070 3722 0.459489 GCAGTGGAGCCAGAGACTAG 59.541 60.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.535780 TGAGGGCACAGCTCAACAAG 60.536 55.000 0.00 0.00 0.00 3.16
2 3 1.071987 CTGAGGGCACAGCTCAACA 59.928 57.895 0.00 0.00 0.00 3.33
3 4 3.978272 CTGAGGGCACAGCTCAAC 58.022 61.111 0.00 0.00 0.00 3.18
13 14 1.210478 TCATAAGGTTCTGCTGAGGGC 59.790 52.381 0.00 0.00 42.22 5.19
14 15 2.503356 AGTCATAAGGTTCTGCTGAGGG 59.497 50.000 0.00 0.00 0.00 4.30
15 16 3.902881 AGTCATAAGGTTCTGCTGAGG 57.097 47.619 0.00 0.00 0.00 3.86
16 17 4.999950 ACAAAGTCATAAGGTTCTGCTGAG 59.000 41.667 0.00 0.00 0.00 3.35
17 18 4.973168 ACAAAGTCATAAGGTTCTGCTGA 58.027 39.130 0.00 0.00 0.00 4.26
18 19 5.009010 ACAACAAAGTCATAAGGTTCTGCTG 59.991 40.000 0.00 0.00 0.00 4.41
19 20 5.009010 CACAACAAAGTCATAAGGTTCTGCT 59.991 40.000 0.00 0.00 0.00 4.24
20 21 5.215160 CACAACAAAGTCATAAGGTTCTGC 58.785 41.667 0.00 0.00 0.00 4.26
21 22 5.299279 ACCACAACAAAGTCATAAGGTTCTG 59.701 40.000 0.00 0.00 0.00 3.02
22 23 5.445964 ACCACAACAAAGTCATAAGGTTCT 58.554 37.500 0.00 0.00 0.00 3.01
23 24 5.767816 ACCACAACAAAGTCATAAGGTTC 57.232 39.130 0.00 0.00 0.00 3.62
24 25 6.362248 AGTACCACAACAAAGTCATAAGGTT 58.638 36.000 0.00 0.00 0.00 3.50
25 26 5.937111 AGTACCACAACAAAGTCATAAGGT 58.063 37.500 0.00 0.00 0.00 3.50
26 27 6.293955 CCAAGTACCACAACAAAGTCATAAGG 60.294 42.308 0.00 0.00 0.00 2.69
27 28 6.293955 CCCAAGTACCACAACAAAGTCATAAG 60.294 42.308 0.00 0.00 0.00 1.73
28 29 5.533154 CCCAAGTACCACAACAAAGTCATAA 59.467 40.000 0.00 0.00 0.00 1.90
29 30 5.067273 CCCAAGTACCACAACAAAGTCATA 58.933 41.667 0.00 0.00 0.00 2.15
30 31 3.888930 CCCAAGTACCACAACAAAGTCAT 59.111 43.478 0.00 0.00 0.00 3.06
31 32 3.283751 CCCAAGTACCACAACAAAGTCA 58.716 45.455 0.00 0.00 0.00 3.41
32 33 3.066203 CACCCAAGTACCACAACAAAGTC 59.934 47.826 0.00 0.00 0.00 3.01
33 34 3.020984 CACCCAAGTACCACAACAAAGT 58.979 45.455 0.00 0.00 0.00 2.66
34 35 3.020984 ACACCCAAGTACCACAACAAAG 58.979 45.455 0.00 0.00 0.00 2.77
35 36 2.755655 CACACCCAAGTACCACAACAAA 59.244 45.455 0.00 0.00 0.00 2.83
36 37 2.291024 ACACACCCAAGTACCACAACAA 60.291 45.455 0.00 0.00 0.00 2.83
37 38 1.282447 ACACACCCAAGTACCACAACA 59.718 47.619 0.00 0.00 0.00 3.33
38 39 1.673920 CACACACCCAAGTACCACAAC 59.326 52.381 0.00 0.00 0.00 3.32
39 40 1.282447 ACACACACCCAAGTACCACAA 59.718 47.619 0.00 0.00 0.00 3.33
40 41 0.913205 ACACACACCCAAGTACCACA 59.087 50.000 0.00 0.00 0.00 4.17
41 42 1.305201 CACACACACCCAAGTACCAC 58.695 55.000 0.00 0.00 0.00 4.16
42 43 0.913205 ACACACACACCCAAGTACCA 59.087 50.000 0.00 0.00 0.00 3.25
43 44 1.305201 CACACACACACCCAAGTACC 58.695 55.000 0.00 0.00 0.00 3.34
44 45 1.668751 CACACACACACACCCAAGTAC 59.331 52.381 0.00 0.00 0.00 2.73
45 46 1.407575 CCACACACACACACCCAAGTA 60.408 52.381 0.00 0.00 0.00 2.24
46 47 0.679640 CCACACACACACACCCAAGT 60.680 55.000 0.00 0.00 0.00 3.16
47 48 0.393673 TCCACACACACACACCCAAG 60.394 55.000 0.00 0.00 0.00 3.61
48 49 0.678366 GTCCACACACACACACCCAA 60.678 55.000 0.00 0.00 0.00 4.12
49 50 1.078072 GTCCACACACACACACCCA 60.078 57.895 0.00 0.00 0.00 4.51
50 51 0.393808 AAGTCCACACACACACACCC 60.394 55.000 0.00 0.00 0.00 4.61
51 52 0.732571 CAAGTCCACACACACACACC 59.267 55.000 0.00 0.00 0.00 4.16
52 53 0.732571 CCAAGTCCACACACACACAC 59.267 55.000 0.00 0.00 0.00 3.82
53 54 0.326595 ACCAAGTCCACACACACACA 59.673 50.000 0.00 0.00 0.00 3.72
54 55 0.732571 CACCAAGTCCACACACACAC 59.267 55.000 0.00 0.00 0.00 3.82
55 56 0.326595 ACACCAAGTCCACACACACA 59.673 50.000 0.00 0.00 0.00 3.72
56 57 0.732571 CACACCAAGTCCACACACAC 59.267 55.000 0.00 0.00 0.00 3.82
57 58 0.393673 CCACACCAAGTCCACACACA 60.394 55.000 0.00 0.00 0.00 3.72
58 59 0.393808 ACCACACCAAGTCCACACAC 60.394 55.000 0.00 0.00 0.00 3.82
59 60 0.329931 AACCACACCAAGTCCACACA 59.670 50.000 0.00 0.00 0.00 3.72
60 61 0.738389 CAACCACACCAAGTCCACAC 59.262 55.000 0.00 0.00 0.00 3.82
61 62 0.329931 ACAACCACACCAAGTCCACA 59.670 50.000 0.00 0.00 0.00 4.17
62 63 2.335316 TACAACCACACCAAGTCCAC 57.665 50.000 0.00 0.00 0.00 4.02
63 64 2.173782 ACATACAACCACACCAAGTCCA 59.826 45.455 0.00 0.00 0.00 4.02
64 65 2.812011 GACATACAACCACACCAAGTCC 59.188 50.000 0.00 0.00 0.00 3.85
65 66 2.812011 GGACATACAACCACACCAAGTC 59.188 50.000 0.00 0.00 0.00 3.01
66 67 2.441750 AGGACATACAACCACACCAAGT 59.558 45.455 0.00 0.00 0.00 3.16
67 68 3.140325 AGGACATACAACCACACCAAG 57.860 47.619 0.00 0.00 0.00 3.61
68 69 3.586470 AAGGACATACAACCACACCAA 57.414 42.857 0.00 0.00 0.00 3.67
69 70 3.218453 CAAAGGACATACAACCACACCA 58.782 45.455 0.00 0.00 0.00 4.17
70 71 2.556622 CCAAAGGACATACAACCACACC 59.443 50.000 0.00 0.00 0.00 4.16
71 72 2.030274 GCCAAAGGACATACAACCACAC 60.030 50.000 0.00 0.00 0.00 3.82
72 73 2.235016 GCCAAAGGACATACAACCACA 58.765 47.619 0.00 0.00 0.00 4.17
73 74 1.199097 CGCCAAAGGACATACAACCAC 59.801 52.381 0.00 0.00 0.00 4.16
74 75 1.529226 CGCCAAAGGACATACAACCA 58.471 50.000 0.00 0.00 0.00 3.67
75 76 0.808755 CCGCCAAAGGACATACAACC 59.191 55.000 0.00 0.00 0.00 3.77
76 77 1.467342 GACCGCCAAAGGACATACAAC 59.533 52.381 0.00 0.00 34.73 3.32
77 78 1.349688 AGACCGCCAAAGGACATACAA 59.650 47.619 0.00 0.00 34.73 2.41
78 79 0.981183 AGACCGCCAAAGGACATACA 59.019 50.000 0.00 0.00 34.73 2.29
79 80 1.369625 CAGACCGCCAAAGGACATAC 58.630 55.000 0.00 0.00 34.73 2.39
80 81 0.392461 GCAGACCGCCAAAGGACATA 60.392 55.000 0.00 0.00 34.73 2.29
81 82 1.675641 GCAGACCGCCAAAGGACAT 60.676 57.895 0.00 0.00 34.73 3.06
82 83 2.281484 GCAGACCGCCAAAGGACA 60.281 61.111 0.00 0.00 34.73 4.02
83 84 1.172812 AAAGCAGACCGCCAAAGGAC 61.173 55.000 0.00 0.00 44.04 3.85
84 85 0.398696 TAAAGCAGACCGCCAAAGGA 59.601 50.000 0.00 0.00 44.04 3.36
85 86 1.401905 GATAAAGCAGACCGCCAAAGG 59.598 52.381 0.00 0.00 44.04 3.11
86 87 2.359900 AGATAAAGCAGACCGCCAAAG 58.640 47.619 0.00 0.00 44.04 2.77
87 88 2.489938 AGATAAAGCAGACCGCCAAA 57.510 45.000 0.00 0.00 44.04 3.28
88 89 3.838244 ATAGATAAAGCAGACCGCCAA 57.162 42.857 0.00 0.00 44.04 4.52
89 90 4.948341 TTATAGATAAAGCAGACCGCCA 57.052 40.909 0.00 0.00 44.04 5.69
90 91 5.847670 CTTTATAGATAAAGCAGACCGCC 57.152 43.478 8.66 0.00 41.69 6.13
100 101 4.339872 TTCGCCCCGCTTTATAGATAAA 57.660 40.909 0.00 0.00 0.00 1.40
101 102 4.312443 CTTTCGCCCCGCTTTATAGATAA 58.688 43.478 0.00 0.00 0.00 1.75
102 103 3.863400 GCTTTCGCCCCGCTTTATAGATA 60.863 47.826 0.00 0.00 0.00 1.98
103 104 2.767505 CTTTCGCCCCGCTTTATAGAT 58.232 47.619 0.00 0.00 0.00 1.98
104 105 1.808891 GCTTTCGCCCCGCTTTATAGA 60.809 52.381 0.00 0.00 0.00 1.98
105 106 0.586802 GCTTTCGCCCCGCTTTATAG 59.413 55.000 0.00 0.00 0.00 1.31
106 107 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
107 108 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
117 118 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
119 120 8.981724 AGATTTAATTACCGAAAAAGGCTTTC 57.018 30.769 13.76 0.41 33.69 2.62
120 121 9.419297 GAAGATTTAATTACCGAAAAAGGCTTT 57.581 29.630 6.68 6.68 33.69 3.51
121 122 8.033038 GGAAGATTTAATTACCGAAAAAGGCTT 58.967 33.333 0.00 0.00 33.69 4.35
122 123 7.363530 GGGAAGATTTAATTACCGAAAAAGGCT 60.364 37.037 0.00 0.00 33.69 4.58
123 124 6.755141 GGGAAGATTTAATTACCGAAAAAGGC 59.245 38.462 0.00 0.00 33.69 4.35
124 125 8.063200 AGGGAAGATTTAATTACCGAAAAAGG 57.937 34.615 0.00 0.00 35.62 3.11
125 126 9.923143 AAAGGGAAGATTTAATTACCGAAAAAG 57.077 29.630 0.00 0.00 35.62 2.27
130 131 8.959548 GGTAAAAAGGGAAGATTTAATTACCGA 58.040 33.333 0.00 0.00 35.62 4.69
131 132 8.963725 AGGTAAAAAGGGAAGATTTAATTACCG 58.036 33.333 0.00 0.00 42.72 4.02
135 136 9.374711 TGTGAGGTAAAAAGGGAAGATTTAATT 57.625 29.630 0.00 0.00 0.00 1.40
141 142 4.202430 ACGTGTGAGGTAAAAAGGGAAGAT 60.202 41.667 0.00 0.00 0.00 2.40
164 165 4.403734 GTCTCACTGACCCCCAAATTTTA 58.596 43.478 0.00 0.00 39.69 1.52
217 218 5.757320 GTCATTAGCAGTTAGATGCATGACT 59.243 40.000 2.46 2.21 46.14 3.41
243 244 4.301072 TCAGTTATTTTGGGACAGAGGG 57.699 45.455 0.00 0.00 42.39 4.30
389 620 2.354510 TCTTTTCTGCAAGTGTCCGTTG 59.645 45.455 0.00 0.00 33.76 4.10
409 640 3.676646 GCATTGCAACATTCAAGTTCCTC 59.323 43.478 0.00 0.00 0.00 3.71
411 642 3.656559 AGCATTGCAACATTCAAGTTCC 58.343 40.909 11.91 0.00 0.00 3.62
412 643 4.553323 AGAGCATTGCAACATTCAAGTTC 58.447 39.130 11.91 0.00 0.00 3.01
595 851 6.476378 AGCTACTGGTATATAAATGGCCAAG 58.524 40.000 10.96 0.00 0.00 3.61
645 956 7.692908 GCTTAGAGCTACTTGTTTCAGATAG 57.307 40.000 0.00 0.00 38.45 2.08
683 1034 4.223556 TGCCATAAATTTACCGGTCTCA 57.776 40.909 12.40 0.00 0.00 3.27
794 1146 8.262933 TCATACCTGAGATGGAAGCATATATTG 58.737 37.037 0.00 0.00 0.00 1.90
797 1173 6.725834 TGTCATACCTGAGATGGAAGCATATA 59.274 38.462 0.00 0.00 30.18 0.86
827 1203 4.068599 AGCAAAGAGAAAGGTTGTAGCTC 58.931 43.478 0.00 0.00 0.00 4.09
876 1252 5.510430 AGAAACCATAATCTGTTCCCCTTC 58.490 41.667 0.00 0.00 0.00 3.46
885 1261 6.886459 TCTTGGAAAGGAGAAACCATAATCTG 59.114 38.462 0.00 0.00 46.24 2.90
921 1300 5.410439 GGCCTCGTAATTCTTTTCAGTGTTA 59.590 40.000 0.00 0.00 0.00 2.41
979 1358 9.133627 CTTCATTATCTCCAACTACATGTATCG 57.866 37.037 5.91 0.00 0.00 2.92
990 1369 7.210873 AGGACGTTATCTTCATTATCTCCAAC 58.789 38.462 0.00 0.00 0.00 3.77
992 1371 6.978674 AGGACGTTATCTTCATTATCTCCA 57.021 37.500 0.00 0.00 0.00 3.86
993 1372 8.740906 TGATAGGACGTTATCTTCATTATCTCC 58.259 37.037 8.36 0.00 32.44 3.71
1014 1393 7.705325 CCTTTTCCAAGCTGATCATTTTGATAG 59.295 37.037 16.67 9.81 37.20 2.08
1112 1491 1.423921 ACTCATCCCCGTTTCCTTTGT 59.576 47.619 0.00 0.00 0.00 2.83
1318 1698 1.934589 CCACGAGCAATACCGATTGA 58.065 50.000 1.88 0.00 44.59 2.57
1374 1754 3.476552 GGGCTTGATATCGAAATGGACA 58.523 45.455 0.00 0.00 0.00 4.02
1494 1874 6.238484 CGATGAATCCAATTGTTCCTCTAACC 60.238 42.308 4.43 0.00 37.27 2.85
2071 2452 3.581101 AGGCCTATCTGCTCAATGAGTA 58.419 45.455 1.29 6.49 31.39 2.59
2109 2490 7.581213 TCTAACAGTGTTGGAAATGAATGTT 57.419 32.000 18.63 0.00 34.91 2.71
2271 2664 9.958180 TCAGAATAAATTGTATTCCTTCTGTGA 57.042 29.630 15.77 0.00 39.25 3.58
2361 2755 6.649557 ACACTACTTAGAGCGCAAAATTTACT 59.350 34.615 11.47 0.00 0.00 2.24
2371 2765 3.064931 ACCAAAACACTACTTAGAGCGC 58.935 45.455 0.00 0.00 0.00 5.92
2373 2767 6.810182 TCGATAACCAAAACACTACTTAGAGC 59.190 38.462 0.00 0.00 0.00 4.09
2375 2769 9.146984 CATTCGATAACCAAAACACTACTTAGA 57.853 33.333 0.00 0.00 0.00 2.10
2376 2770 8.388103 CCATTCGATAACCAAAACACTACTTAG 58.612 37.037 0.00 0.00 0.00 2.18
2377 2771 7.334921 CCCATTCGATAACCAAAACACTACTTA 59.665 37.037 0.00 0.00 0.00 2.24
2379 2773 5.646360 CCCATTCGATAACCAAAACACTACT 59.354 40.000 0.00 0.00 0.00 2.57
2380 2774 5.163693 CCCCATTCGATAACCAAAACACTAC 60.164 44.000 0.00 0.00 0.00 2.73
2381 2775 4.944930 CCCCATTCGATAACCAAAACACTA 59.055 41.667 0.00 0.00 0.00 2.74
2383 2777 3.119280 CCCCCATTCGATAACCAAAACAC 60.119 47.826 0.00 0.00 0.00 3.32
2385 2779 3.793797 CCCCCATTCGATAACCAAAAC 57.206 47.619 0.00 0.00 0.00 2.43
2407 2801 0.824595 AACAACGTTTACCAGCCCCC 60.825 55.000 0.00 0.00 0.00 5.40
2408 2802 1.536766 GTAACAACGTTTACCAGCCCC 59.463 52.381 0.00 0.00 0.00 5.80
2409 2803 2.975410 GTAACAACGTTTACCAGCCC 57.025 50.000 0.00 0.00 0.00 5.19
2424 2818 2.147436 TTCGTGGTAACCGTGGTAAC 57.853 50.000 0.00 0.00 0.00 2.50
2425 2819 2.102252 ACTTTCGTGGTAACCGTGGTAA 59.898 45.455 0.00 0.00 0.00 2.85
2426 2820 1.686052 ACTTTCGTGGTAACCGTGGTA 59.314 47.619 0.00 0.00 0.00 3.25
2427 2821 0.465287 ACTTTCGTGGTAACCGTGGT 59.535 50.000 0.00 0.00 0.00 4.16
2428 2822 1.585297 AACTTTCGTGGTAACCGTGG 58.415 50.000 0.00 0.00 0.00 4.94
2429 2823 2.608546 TCAAACTTTCGTGGTAACCGTG 59.391 45.455 0.00 0.00 0.00 4.94
2430 2824 2.867975 CTCAAACTTTCGTGGTAACCGT 59.132 45.455 0.00 0.00 0.00 4.83
2431 2825 3.125316 TCTCAAACTTTCGTGGTAACCG 58.875 45.455 0.00 0.00 0.00 4.44
2432 2826 5.488645 TTTCTCAAACTTTCGTGGTAACC 57.511 39.130 0.00 0.00 0.00 2.85
2433 2827 7.980742 AATTTTCTCAAACTTTCGTGGTAAC 57.019 32.000 0.00 0.00 0.00 2.50
2434 2828 7.429920 CGAAATTTTCTCAAACTTTCGTGGTAA 59.570 33.333 18.58 0.00 37.66 2.85
2435 2829 6.908284 CGAAATTTTCTCAAACTTTCGTGGTA 59.092 34.615 18.58 0.00 37.66 3.25
2436 2830 5.741982 CGAAATTTTCTCAAACTTTCGTGGT 59.258 36.000 18.58 0.00 37.66 4.16
2437 2831 5.968848 TCGAAATTTTCTCAAACTTTCGTGG 59.031 36.000 22.63 6.53 39.96 4.94
2438 2832 7.431215 TTCGAAATTTTCTCAAACTTTCGTG 57.569 32.000 22.63 7.01 39.96 4.35
2573 3215 2.928361 CGACCTCACAACACGCAC 59.072 61.111 0.00 0.00 0.00 5.34
2617 3259 9.708222 CAGTATGCAAGTATAAAACATGAGAAC 57.292 33.333 0.00 0.00 0.00 3.01
2652 3294 1.720781 AAAGTGCCCCTTCTTGCAAT 58.279 45.000 0.00 0.00 39.57 3.56
2655 3297 1.869774 CAAAAAGTGCCCCTTCTTGC 58.130 50.000 0.00 0.00 31.27 4.01
2725 3367 0.884514 GAAAGAGCCCCTTCTTGCAC 59.115 55.000 0.00 0.00 37.48 4.57
2805 3447 4.757149 ACAATGTTCCACTGAGTTAGAAGC 59.243 41.667 0.00 0.00 0.00 3.86
2917 3559 6.039616 GCAATGTGTGTTTTTCCTTTAGTGA 58.960 36.000 0.00 0.00 0.00 3.41
2937 3579 4.037208 GCTTACTGCATGATACAAGGCAAT 59.963 41.667 0.00 0.00 42.31 3.56
2969 3621 0.035439 ACATGGAAGTAAGCCGTGGG 60.035 55.000 0.00 0.00 44.82 4.61
2970 3622 2.684001 TACATGGAAGTAAGCCGTGG 57.316 50.000 0.00 0.00 44.82 4.94
2980 3632 6.439712 CGACATATTCGTCTTACATGGAAG 57.560 41.667 11.83 11.83 43.24 3.46
2996 3648 4.707030 TCGTGTGTCCTTTACGACATAT 57.293 40.909 0.00 0.00 44.27 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.