Multiple sequence alignment - TraesCS3B01G054700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G054700 chr3B 100.000 2984 0 0 1 2984 28362801 28365784 0.000000e+00 5511.0
1 TraesCS3B01G054700 chr3B 89.130 1104 120 0 878 1981 13966264 13967367 0.000000e+00 1375.0
2 TraesCS3B01G054700 chr3B 83.740 492 67 8 2503 2984 13967913 13968401 1.260000e-123 453.0
3 TraesCS3B01G054700 chrUn 88.678 1104 125 0 878 1981 296501508 296500405 0.000000e+00 1347.0
4 TraesCS3B01G054700 chrUn 85.740 1101 157 0 881 1981 238784735 238785835 0.000000e+00 1164.0
5 TraesCS3B01G054700 chrUn 85.792 1098 156 0 884 1981 240351536 240350439 0.000000e+00 1164.0
6 TraesCS3B01G054700 chrUn 85.059 1111 160 5 875 1981 36344493 36345601 0.000000e+00 1127.0
7 TraesCS3B01G054700 chrUn 85.195 1101 159 4 883 1981 214890502 214889404 0.000000e+00 1127.0
8 TraesCS3B01G054700 chrUn 83.316 971 103 29 2044 2984 238786787 238787728 0.000000e+00 841.0
9 TraesCS3B01G054700 chrUn 83.316 971 103 29 2044 2984 240349487 240348546 0.000000e+00 841.0
10 TraesCS3B01G054700 chrUn 86.653 472 52 8 2522 2984 250053747 250054216 2.050000e-141 512.0
11 TraesCS3B01G054700 chrUn 86.653 472 52 8 2522 2984 261090727 261091196 2.050000e-141 512.0
12 TraesCS3B01G054700 chrUn 92.667 300 22 0 2008 2307 36346841 36347140 1.640000e-117 433.0
13 TraesCS3B01G054700 chrUn 92.409 303 23 0 2008 2310 214888164 214887862 1.640000e-117 433.0
14 TraesCS3B01G054700 chrUn 84.921 378 47 6 2503 2874 260327252 260326879 1.010000e-99 374.0
15 TraesCS3B01G054700 chrUn 80.503 477 56 19 2522 2984 260324631 260324178 6.170000e-87 331.0
16 TraesCS3B01G054700 chrUn 93.103 203 14 0 2008 2210 260326863 260326661 6.250000e-77 298.0
17 TraesCS3B01G054700 chrUn 82.985 335 35 6 2655 2984 296499678 296499361 1.750000e-72 283.0
18 TraesCS3B01G054700 chrUn 85.393 267 29 8 2344 2604 36347204 36347466 4.900000e-68 268.0
19 TraesCS3B01G054700 chrUn 85.393 267 29 8 2344 2604 214887801 214887539 4.900000e-68 268.0
20 TraesCS3B01G054700 chrUn 87.912 182 19 2 2344 2525 260324911 260324733 8.380000e-51 211.0
21 TraesCS3B01G054700 chrUn 78.986 138 14 8 2672 2806 265030912 265031037 2.470000e-11 80.5
22 TraesCS3B01G054700 chrUn 82.022 89 13 2 2721 2806 213715350 213715262 4.130000e-09 73.1
23 TraesCS3B01G054700 chr3A 86.613 1128 148 2 857 1981 10952722 10951595 0.000000e+00 1243.0
24 TraesCS3B01G054700 chr3A 85.087 1093 161 2 890 1981 11410052 11408961 0.000000e+00 1114.0
25 TraesCS3B01G054700 chr3A 81.975 405 51 12 2590 2976 11408184 11407784 1.030000e-84 324.0
26 TraesCS3B01G054700 chr3A 91.071 56 5 0 4 59 10954096 10954041 3.190000e-10 76.8
27 TraesCS3B01G054700 chr3D 85.091 1100 162 2 883 1981 5007054 5005956 0.000000e+00 1122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G054700 chr3B 28362801 28365784 2983 False 5511.000000 5511 100.000000 1 2984 1 chr3B.!!$F1 2983
1 TraesCS3B01G054700 chr3B 13966264 13968401 2137 False 914.000000 1375 86.435000 878 2984 2 chr3B.!!$F2 2106
2 TraesCS3B01G054700 chrUn 238784735 238787728 2993 False 1002.500000 1164 84.528000 881 2984 2 chrUn.!!$F5 2103
3 TraesCS3B01G054700 chrUn 240348546 240351536 2990 True 1002.500000 1164 84.554000 884 2984 2 chrUn.!!$R3 2100
4 TraesCS3B01G054700 chrUn 296499361 296501508 2147 True 815.000000 1347 85.831500 878 2984 2 chrUn.!!$R5 2106
5 TraesCS3B01G054700 chrUn 36344493 36347466 2973 False 609.333333 1127 87.706333 875 2604 3 chrUn.!!$F4 1729
6 TraesCS3B01G054700 chrUn 214887539 214890502 2963 True 609.333333 1127 87.665667 883 2604 3 chrUn.!!$R2 1721
7 TraesCS3B01G054700 chrUn 260324178 260327252 3074 True 303.500000 374 86.609750 2008 2984 4 chrUn.!!$R4 976
8 TraesCS3B01G054700 chr3A 11407784 11410052 2268 True 719.000000 1114 83.531000 890 2976 2 chr3A.!!$R2 2086
9 TraesCS3B01G054700 chr3A 10951595 10954096 2501 True 659.900000 1243 88.842000 4 1981 2 chr3A.!!$R1 1977
10 TraesCS3B01G054700 chr3D 5005956 5007054 1098 True 1122.000000 1122 85.091000 883 1981 1 chr3D.!!$R1 1098

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 807 0.038526 GTGTCACGATGAGAACCCGT 60.039 55.0 0.0 0.0 36.95 5.28 F
531 834 0.322187 ATTCCTCCCGTTCCGGTTTG 60.322 55.0 0.0 0.0 46.80 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 2286 0.037882 AGATATCGCATCCACCGCTG 60.038 55.0 0.00 0.00 0.00 5.18 R
2321 5870 0.043334 ATACAGGACAGGCTGGGTCT 59.957 55.0 20.34 9.89 35.61 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.159506 TCCATTACCTTGCAAGCATTTACC 59.840 41.667 21.43 0.00 0.00 2.85
54 55 4.432712 CATTACCTTGCAAGCATTTACCC 58.567 43.478 21.43 0.00 0.00 3.69
60 329 2.446435 TGCAAGCATTTACCCTCTTCC 58.554 47.619 0.00 0.00 0.00 3.46
62 331 2.424956 GCAAGCATTTACCCTCTTCCTG 59.575 50.000 0.00 0.00 0.00 3.86
65 334 3.115390 AGCATTTACCCTCTTCCTGCTA 58.885 45.455 0.00 0.00 36.77 3.49
82 351 1.608109 GCTAGCTACTCTTACCCGGAC 59.392 57.143 7.70 0.00 0.00 4.79
85 354 0.749454 GCTACTCTTACCCGGACGGA 60.749 60.000 13.13 0.00 37.50 4.69
88 357 2.442236 ACTCTTACCCGGACGGAATA 57.558 50.000 13.13 1.44 37.50 1.75
90 359 2.092212 ACTCTTACCCGGACGGAATAGA 60.092 50.000 13.13 9.83 37.50 1.98
95 364 3.165087 ACCCGGACGGAATAGATGATA 57.835 47.619 13.13 0.00 37.50 2.15
96 365 3.090037 ACCCGGACGGAATAGATGATAG 58.910 50.000 13.13 0.00 37.50 2.08
97 366 3.245158 ACCCGGACGGAATAGATGATAGA 60.245 47.826 13.13 0.00 37.50 1.98
101 370 5.220951 CCGGACGGAATAGATGATAGATCAG 60.221 48.000 4.40 0.00 37.60 2.90
105 374 7.284261 GGACGGAATAGATGATAGATCAGATGA 59.716 40.741 0.00 0.00 40.64 2.92
106 375 8.586879 ACGGAATAGATGATAGATCAGATGAA 57.413 34.615 0.00 0.00 40.64 2.57
129 398 8.836413 TGAACTTTACTATTTGTCAGTTGAAGG 58.164 33.333 0.00 0.00 34.38 3.46
130 399 8.747538 AACTTTACTATTTGTCAGTTGAAGGT 57.252 30.769 0.00 0.00 33.52 3.50
131 400 8.379457 ACTTTACTATTTGTCAGTTGAAGGTC 57.621 34.615 0.00 0.00 0.00 3.85
132 401 7.170998 ACTTTACTATTTGTCAGTTGAAGGTCG 59.829 37.037 0.00 0.00 0.00 4.79
163 435 1.152510 TTGCTAATTGTTCGCGAGCA 58.847 45.000 22.26 22.26 41.23 4.26
164 436 0.721154 TGCTAATTGTTCGCGAGCAG 59.279 50.000 24.49 14.70 38.20 4.24
167 439 2.034507 GCTAATTGTTCGCGAGCAGTAG 60.035 50.000 26.90 26.90 33.26 2.57
168 440 2.080286 AATTGTTCGCGAGCAGTAGT 57.920 45.000 24.49 8.72 0.00 2.73
169 441 2.933495 ATTGTTCGCGAGCAGTAGTA 57.067 45.000 24.49 11.09 0.00 1.82
172 444 3.226346 TGTTCGCGAGCAGTAGTAAAT 57.774 42.857 22.26 0.00 0.00 1.40
175 447 5.345702 TGTTCGCGAGCAGTAGTAAATAAT 58.654 37.500 22.26 0.00 0.00 1.28
176 448 6.497437 TGTTCGCGAGCAGTAGTAAATAATA 58.503 36.000 22.26 0.00 0.00 0.98
177 449 6.415867 TGTTCGCGAGCAGTAGTAAATAATAC 59.584 38.462 22.26 5.12 0.00 1.89
178 450 6.309712 TCGCGAGCAGTAGTAAATAATACT 57.690 37.500 3.71 0.00 37.56 2.12
183 455 9.116054 GCGAGCAGTAGTAAATAATACTTAGTC 57.884 37.037 0.00 0.00 35.19 2.59
194 466 8.828688 AAATAATACTTAGTCGATACAAGCCC 57.171 34.615 0.00 0.00 0.00 5.19
196 468 1.202382 ACTTAGTCGATACAAGCCCGC 60.202 52.381 0.00 0.00 0.00 6.13
198 470 0.666913 TAGTCGATACAAGCCCGCTC 59.333 55.000 0.00 0.00 0.00 5.03
200 472 1.756950 TCGATACAAGCCCGCTCCT 60.757 57.895 0.00 0.00 0.00 3.69
212 484 3.123620 GCTCCTTGCCTGAGTGCG 61.124 66.667 0.00 0.00 35.15 5.34
215 487 0.603707 CTCCTTGCCTGAGTGCGAAA 60.604 55.000 0.00 0.00 0.00 3.46
231 503 9.039870 TGAGTGCGAAAAATTCATTTGTTTATT 57.960 25.926 0.00 0.00 0.00 1.40
242 514 9.696917 AATTCATTTGTTTATTTCTGGACTGAC 57.303 29.630 0.00 0.00 0.00 3.51
243 515 7.214467 TCATTTGTTTATTTCTGGACTGACC 57.786 36.000 0.00 0.00 39.54 4.02
244 516 5.682943 TTTGTTTATTTCTGGACTGACCG 57.317 39.130 0.00 0.00 42.61 4.79
245 517 4.345859 TGTTTATTTCTGGACTGACCGT 57.654 40.909 0.00 0.00 42.61 4.83
246 518 5.471556 TGTTTATTTCTGGACTGACCGTA 57.528 39.130 0.00 0.00 42.61 4.02
247 519 5.856156 TGTTTATTTCTGGACTGACCGTAA 58.144 37.500 0.00 0.00 42.61 3.18
257 529 5.984725 TGGACTGACCGTAATTATTGTGAT 58.015 37.500 0.00 0.00 42.61 3.06
260 532 8.208224 TGGACTGACCGTAATTATTGTGATATT 58.792 33.333 0.00 0.00 42.61 1.28
261 533 8.709646 GGACTGACCGTAATTATTGTGATATTC 58.290 37.037 0.00 0.00 0.00 1.75
262 534 9.256477 GACTGACCGTAATTATTGTGATATTCA 57.744 33.333 0.00 0.00 0.00 2.57
274 546 3.245990 TGTGATATTCAATCTCTTGCGCG 59.754 43.478 0.00 0.00 32.11 6.86
290 562 0.999406 CGCGTTCCTGTGGATACTTG 59.001 55.000 0.00 0.00 37.61 3.16
294 566 0.251916 TTCCTGTGGATACTTGGCCG 59.748 55.000 0.00 0.00 37.61 6.13
295 567 1.819632 CCTGTGGATACTTGGCCGC 60.820 63.158 0.00 0.00 35.28 6.53
297 569 2.125269 GTGGATACTTGGCCGCGT 60.125 61.111 4.92 0.00 37.61 6.01
302 574 3.675619 ATACTTGGCCGCGTCACCC 62.676 63.158 4.92 0.00 0.00 4.61
314 586 1.522668 CGTCACCCTTTGATGCTTCA 58.477 50.000 0.00 0.00 36.32 3.02
333 605 4.371624 TCATCAATCCTGGACAAACAGT 57.628 40.909 0.00 0.00 36.75 3.55
337 609 4.394729 TCAATCCTGGACAAACAGTTACC 58.605 43.478 0.00 0.00 36.75 2.85
338 610 4.141287 CAATCCTGGACAAACAGTTACCA 58.859 43.478 0.00 6.61 36.75 3.25
343 615 4.298332 CTGGACAAACAGTTACCAAATGC 58.702 43.478 7.77 0.00 33.81 3.56
352 654 4.817464 ACAGTTACCAAATGCAAGTTACGA 59.183 37.500 0.00 0.00 0.00 3.43
358 660 6.178239 ACCAAATGCAAGTTACGAAGATAC 57.822 37.500 0.00 0.00 0.00 2.24
368 670 5.109903 AGTTACGAAGATACCATGCACTTC 58.890 41.667 0.00 0.00 36.44 3.01
370 672 4.142609 ACGAAGATACCATGCACTTCAT 57.857 40.909 11.62 0.00 38.71 2.57
374 676 5.333645 CGAAGATACCATGCACTTCATAAGC 60.334 44.000 11.62 0.00 38.71 3.09
385 687 4.158394 GCACTTCATAAGCAAGGGATTTCA 59.842 41.667 0.00 0.00 0.00 2.69
390 692 6.455360 TCATAAGCAAGGGATTTCATGTTC 57.545 37.500 0.00 0.00 0.00 3.18
392 694 2.795329 AGCAAGGGATTTCATGTTCGT 58.205 42.857 0.00 0.00 0.00 3.85
393 695 2.489329 AGCAAGGGATTTCATGTTCGTG 59.511 45.455 0.00 0.00 0.00 4.35
396 698 4.229096 CAAGGGATTTCATGTTCGTGTTG 58.771 43.478 0.00 0.00 0.00 3.33
397 699 2.819608 AGGGATTTCATGTTCGTGTTGG 59.180 45.455 0.00 0.00 0.00 3.77
399 701 3.365969 GGGATTTCATGTTCGTGTTGGTC 60.366 47.826 0.00 0.00 0.00 4.02
400 702 3.479006 GATTTCATGTTCGTGTTGGTCG 58.521 45.455 0.00 0.00 0.00 4.79
403 705 0.234625 CATGTTCGTGTTGGTCGTGG 59.765 55.000 0.00 0.00 0.00 4.94
406 708 1.085501 GTTCGTGTTGGTCGTGGTGT 61.086 55.000 0.00 0.00 0.00 4.16
408 710 0.391395 TCGTGTTGGTCGTGGTGTTT 60.391 50.000 0.00 0.00 0.00 2.83
410 712 0.099791 GTGTTGGTCGTGGTGTTTGG 59.900 55.000 0.00 0.00 0.00 3.28
419 721 1.891919 TGGTGTTTGGCTCGACAGC 60.892 57.895 9.55 9.55 46.06 4.40
429 731 0.802607 GCTCGACAGCCTTTCTACGG 60.803 60.000 0.00 0.00 40.14 4.02
439 741 2.678336 GCCTTTCTACGGTCATCAAAGG 59.322 50.000 12.38 12.38 44.10 3.11
440 742 3.868754 GCCTTTCTACGGTCATCAAAGGT 60.869 47.826 15.69 0.00 43.46 3.50
447 749 1.881925 CGGTCATCAAAGGTTGCCTGA 60.882 52.381 0.00 0.00 32.13 3.86
471 773 3.498774 ATTCAACAAGGTGAGTCTGCT 57.501 42.857 0.00 0.00 0.00 4.24
477 779 1.067000 CAAGGTGAGTCTGCTCTCTGG 60.067 57.143 0.00 0.00 42.13 3.86
479 781 1.539560 GGTGAGTCTGCTCTCTGGCA 61.540 60.000 0.00 0.00 42.13 4.92
489 791 1.193323 CTCTCTGGCAGATGGAGTGT 58.807 55.000 19.11 0.00 0.00 3.55
490 792 1.136695 CTCTCTGGCAGATGGAGTGTC 59.863 57.143 19.11 0.00 0.00 3.67
491 793 0.900421 CTCTGGCAGATGGAGTGTCA 59.100 55.000 19.11 0.00 0.00 3.58
492 794 0.610174 TCTGGCAGATGGAGTGTCAC 59.390 55.000 14.43 0.00 0.00 3.67
493 795 0.738762 CTGGCAGATGGAGTGTCACG 60.739 60.000 9.42 0.00 0.00 4.35
494 796 1.184970 TGGCAGATGGAGTGTCACGA 61.185 55.000 0.00 0.00 0.00 4.35
495 797 0.176680 GGCAGATGGAGTGTCACGAT 59.823 55.000 0.00 0.00 0.00 3.73
498 800 2.807044 CAGATGGAGTGTCACGATGAG 58.193 52.381 0.00 0.00 0.00 2.90
499 801 2.424956 CAGATGGAGTGTCACGATGAGA 59.575 50.000 0.00 0.00 0.00 3.27
500 802 3.092301 AGATGGAGTGTCACGATGAGAA 58.908 45.455 0.00 0.00 0.00 2.87
501 803 2.724977 TGGAGTGTCACGATGAGAAC 57.275 50.000 0.00 0.00 0.00 3.01
502 804 1.272490 TGGAGTGTCACGATGAGAACC 59.728 52.381 0.00 0.00 0.00 3.62
503 805 1.404315 GGAGTGTCACGATGAGAACCC 60.404 57.143 0.00 0.00 0.00 4.11
504 806 0.243907 AGTGTCACGATGAGAACCCG 59.756 55.000 0.00 0.00 0.00 5.28
505 807 0.038526 GTGTCACGATGAGAACCCGT 60.039 55.000 0.00 0.00 36.95 5.28
509 811 1.508632 CACGATGAGAACCCGTGTTT 58.491 50.000 0.00 0.00 45.79 2.83
510 812 1.459592 CACGATGAGAACCCGTGTTTC 59.540 52.381 0.00 0.00 45.79 2.78
511 813 1.343465 ACGATGAGAACCCGTGTTTCT 59.657 47.619 0.00 0.00 33.97 2.52
512 814 2.559668 ACGATGAGAACCCGTGTTTCTA 59.440 45.455 0.00 0.00 33.97 2.10
519 821 3.055312 AGAACCCGTGTTTCTATTCCTCC 60.055 47.826 0.00 0.00 33.97 4.30
520 822 1.558294 ACCCGTGTTTCTATTCCTCCC 59.442 52.381 0.00 0.00 0.00 4.30
522 824 1.206371 CCGTGTTTCTATTCCTCCCGT 59.794 52.381 0.00 0.00 0.00 5.28
524 827 2.928116 CGTGTTTCTATTCCTCCCGTTC 59.072 50.000 0.00 0.00 0.00 3.95
526 829 2.093869 TGTTTCTATTCCTCCCGTTCCG 60.094 50.000 0.00 0.00 0.00 4.30
531 834 0.322187 ATTCCTCCCGTTCCGGTTTG 60.322 55.000 0.00 0.00 46.80 2.93
538 841 2.553172 TCCCGTTCCGGTTTGTTTTATG 59.447 45.455 0.00 0.00 46.80 1.90
540 843 3.557508 CCGTTCCGGTTTGTTTTATGAC 58.442 45.455 0.00 0.00 42.73 3.06
542 845 3.003482 CGTTCCGGTTTGTTTTATGACCA 59.997 43.478 0.00 0.00 32.41 4.02
546 849 5.374921 TCCGGTTTGTTTTATGACCAACTA 58.625 37.500 0.00 0.00 32.41 2.24
547 850 5.826737 TCCGGTTTGTTTTATGACCAACTAA 59.173 36.000 0.00 0.00 32.41 2.24
570 873 5.767277 AAAATTGCATCCCCTCTTGAATT 57.233 34.783 0.00 0.00 0.00 2.17
597 900 4.669206 TTGTTCAATGGTGATTTGCAGT 57.331 36.364 0.00 0.00 32.48 4.40
600 903 3.921119 TCAATGGTGATTTGCAGTGAC 57.079 42.857 0.00 0.00 0.00 3.67
614 917 1.534595 CAGTGACTTCAGGAAGCAAGC 59.465 52.381 8.89 0.00 41.99 4.01
635 938 4.508461 CATCTCCTGCAAACACAATGAA 57.492 40.909 0.00 0.00 0.00 2.57
638 941 3.507233 TCTCCTGCAAACACAATGAATCC 59.493 43.478 0.00 0.00 0.00 3.01
651 954 4.082787 ACAATGAATCCGATTCGTGCTTTT 60.083 37.500 15.17 0.00 42.15 2.27
652 955 4.701956 ATGAATCCGATTCGTGCTTTTT 57.298 36.364 13.95 0.00 42.15 1.94
684 987 7.553334 AGTGAGATACCGTTCTTAAAATGCTA 58.447 34.615 0.00 0.00 0.00 3.49
685 988 8.204836 AGTGAGATACCGTTCTTAAAATGCTAT 58.795 33.333 0.00 0.00 0.00 2.97
686 989 8.276325 GTGAGATACCGTTCTTAAAATGCTATG 58.724 37.037 0.00 0.00 0.00 2.23
689 992 8.827677 AGATACCGTTCTTAAAATGCTATGAAC 58.172 33.333 0.00 0.00 34.75 3.18
691 994 4.728608 CCGTTCTTAAAATGCTATGAACGC 59.271 41.667 18.49 0.00 46.95 4.84
695 998 6.349973 TCTTAAAATGCTATGAACGCTCTG 57.650 37.500 0.00 0.00 0.00 3.35
701 1004 1.526041 GCTATGAACGCTCTGATGCAG 59.474 52.381 0.00 0.00 0.00 4.41
702 1005 2.819115 CTATGAACGCTCTGATGCAGT 58.181 47.619 0.00 0.00 32.61 4.40
703 1006 2.967599 ATGAACGCTCTGATGCAGTA 57.032 45.000 0.00 0.00 32.61 2.74
704 1007 2.741759 TGAACGCTCTGATGCAGTAA 57.258 45.000 0.00 0.00 32.61 2.24
705 1008 2.610433 TGAACGCTCTGATGCAGTAAG 58.390 47.619 0.00 0.00 32.61 2.34
706 1009 2.231235 TGAACGCTCTGATGCAGTAAGA 59.769 45.455 0.00 0.00 32.61 2.10
707 1010 3.254060 GAACGCTCTGATGCAGTAAGAA 58.746 45.455 0.00 0.00 32.61 2.52
708 1011 2.886081 ACGCTCTGATGCAGTAAGAAG 58.114 47.619 0.00 0.00 32.61 2.85
709 1012 2.232452 ACGCTCTGATGCAGTAAGAAGT 59.768 45.455 0.00 0.00 32.61 3.01
710 1013 3.257393 CGCTCTGATGCAGTAAGAAGTT 58.743 45.455 0.00 0.00 32.61 2.66
711 1014 4.082190 ACGCTCTGATGCAGTAAGAAGTTA 60.082 41.667 0.00 0.00 32.61 2.24
712 1015 5.046529 CGCTCTGATGCAGTAAGAAGTTAT 58.953 41.667 0.00 0.00 32.61 1.89
713 1016 5.051173 CGCTCTGATGCAGTAAGAAGTTATG 60.051 44.000 0.00 0.00 32.61 1.90
716 1019 7.492669 GCTCTGATGCAGTAAGAAGTTATGTAA 59.507 37.037 0.00 0.00 32.61 2.41
717 1020 8.932945 TCTGATGCAGTAAGAAGTTATGTAAG 57.067 34.615 0.00 0.00 32.61 2.34
720 1023 9.719355 TGATGCAGTAAGAAGTTATGTAAGAAA 57.281 29.630 0.00 0.00 0.00 2.52
726 1029 5.526010 AGAAGTTATGTAAGAAAACCGCG 57.474 39.130 0.00 0.00 0.00 6.46
728 1031 4.916099 AGTTATGTAAGAAAACCGCGTC 57.084 40.909 4.92 0.00 0.00 5.19
731 1034 1.411394 TGTAAGAAAACCGCGTCTCG 58.589 50.000 4.92 0.00 38.08 4.04
741 1044 1.154093 CGCGTCTCGTGTATGTGGT 60.154 57.895 0.00 0.00 32.40 4.16
742 1045 0.731514 CGCGTCTCGTGTATGTGGTT 60.732 55.000 0.00 0.00 32.40 3.67
745 1048 1.719246 CGTCTCGTGTATGTGGTTGTG 59.281 52.381 0.00 0.00 0.00 3.33
746 1049 2.066262 GTCTCGTGTATGTGGTTGTGG 58.934 52.381 0.00 0.00 0.00 4.17
748 1051 0.759959 TCGTGTATGTGGTTGTGGGT 59.240 50.000 0.00 0.00 0.00 4.51
749 1052 1.141254 TCGTGTATGTGGTTGTGGGTT 59.859 47.619 0.00 0.00 0.00 4.11
750 1053 2.367894 TCGTGTATGTGGTTGTGGGTTA 59.632 45.455 0.00 0.00 0.00 2.85
751 1054 3.008157 TCGTGTATGTGGTTGTGGGTTAT 59.992 43.478 0.00 0.00 0.00 1.89
752 1055 4.222366 TCGTGTATGTGGTTGTGGGTTATA 59.778 41.667 0.00 0.00 0.00 0.98
753 1056 4.936411 CGTGTATGTGGTTGTGGGTTATAA 59.064 41.667 0.00 0.00 0.00 0.98
754 1057 5.587043 CGTGTATGTGGTTGTGGGTTATAAT 59.413 40.000 0.00 0.00 0.00 1.28
766 1069 9.243105 GTTGTGGGTTATAATGCCATAATATCT 57.757 33.333 0.00 0.00 0.00 1.98
779 1082 7.396418 TGCCATAATATCTGCTATTGACATCA 58.604 34.615 0.00 0.00 32.26 3.07
791 1094 6.211184 TGCTATTGACATCACCAAATTCCTTT 59.789 34.615 0.00 0.00 0.00 3.11
803 1106 4.694982 CCAAATTCCTTTTTGGTATGTGGC 59.305 41.667 7.61 0.00 46.94 5.01
804 1107 5.303971 CAAATTCCTTTTTGGTATGTGGCA 58.696 37.500 0.00 0.00 33.81 4.92
808 1111 5.559148 TCCTTTTTGGTATGTGGCAATTT 57.441 34.783 0.00 0.00 37.07 1.82
816 1120 6.672266 TGGTATGTGGCAATTTCCTTTTTA 57.328 33.333 0.00 0.00 0.00 1.52
842 1146 9.445878 AAATCATCACAGCTATAATCTGGTATG 57.554 33.333 0.00 8.38 35.94 2.39
859 1416 8.885693 TCTGGTATGCTTATATATGACAGTCT 57.114 34.615 1.31 0.00 0.00 3.24
868 1425 8.728833 GCTTATATATGACAGTCTAACTACGGT 58.271 37.037 1.31 0.00 0.00 4.83
874 1431 4.202441 GACAGTCTAACTACGGTATCCCA 58.798 47.826 0.00 0.00 0.00 4.37
993 1552 3.677424 CGGTTGAGAAGTTCCTCCAGATC 60.677 52.174 0.00 0.00 32.32 2.75
996 1555 3.102972 TGAGAAGTTCCTCCAGATCCAG 58.897 50.000 0.00 0.00 32.32 3.86
1028 1587 1.891150 CCCGATAAGGTACGCCTACAT 59.109 52.381 0.00 0.00 46.33 2.29
1094 1653 3.046283 AGGTGGCTATGGATCTGTGTA 57.954 47.619 0.00 0.00 0.00 2.90
1115 1674 1.281867 CAAGGGTGTGCTATTCCCAGA 59.718 52.381 0.00 0.00 43.31 3.86
1116 1675 1.668826 AGGGTGTGCTATTCCCAGAA 58.331 50.000 0.00 0.00 43.31 3.02
1117 1676 1.561542 AGGGTGTGCTATTCCCAGAAG 59.438 52.381 0.00 0.00 43.31 2.85
1120 1679 3.471680 GGTGTGCTATTCCCAGAAGATC 58.528 50.000 0.00 0.00 0.00 2.75
1124 1683 2.630098 TGCTATTCCCAGAAGATCTCCG 59.370 50.000 0.00 0.00 0.00 4.63
1134 1693 3.801050 CAGAAGATCTCCGTATTGCTGTG 59.199 47.826 0.00 0.00 0.00 3.66
1144 1703 4.094294 TCCGTATTGCTGTGAAAATGCTAC 59.906 41.667 0.00 0.00 0.00 3.58
1147 1706 5.163864 CGTATTGCTGTGAAAATGCTACAGA 60.164 40.000 7.71 0.00 43.35 3.41
1157 1716 6.091441 GTGAAAATGCTACAGAGTAACTCCAG 59.909 42.308 0.00 0.00 0.00 3.86
1179 1738 4.710375 AGCTGCAATGGAGAAGATTTCATT 59.290 37.500 5.79 0.00 0.00 2.57
1230 1789 1.135888 CATGTCAATGTGGTGCGTCTG 60.136 52.381 0.00 0.00 0.00 3.51
1233 1792 1.394917 GTCAATGTGGTGCGTCTGATC 59.605 52.381 0.00 0.00 0.00 2.92
1302 1861 2.548067 GCCTCGAGGTTCTCTTGACAAA 60.548 50.000 31.43 0.00 37.57 2.83
1315 1874 9.387123 GTTCTCTTGACAAATACATCTTTTCAC 57.613 33.333 0.00 0.00 0.00 3.18
1440 1999 2.957680 TGACATCAAGCCACACAACATT 59.042 40.909 0.00 0.00 0.00 2.71
1461 2020 7.043565 ACATTCTTCTTGACAGCAATTTTGTT 58.956 30.769 0.00 0.00 32.68 2.83
1462 2021 7.550196 ACATTCTTCTTGACAGCAATTTTGTTT 59.450 29.630 0.00 0.00 32.68 2.83
1468 2027 8.266392 TCTTGACAGCAATTTTGTTTCAAAAT 57.734 26.923 12.69 12.69 32.68 1.82
1501 2060 2.897326 GGACTTGCCAAACTTTACCCAT 59.103 45.455 0.00 0.00 36.34 4.00
1504 2063 2.685106 TGCCAAACTTTACCCATGGA 57.315 45.000 15.22 0.00 32.82 3.41
1573 2132 6.778834 ACATAGCTCCTGAGATGATATCTG 57.221 41.667 3.98 0.00 40.38 2.90
1602 2161 1.678101 GGTGCCATATCAAGCAAGTCC 59.322 52.381 0.00 0.00 41.48 3.85
1725 2284 3.821033 GGGTGAATGACAAACTAACTGCT 59.179 43.478 0.00 0.00 0.00 4.24
1727 2286 4.083271 GGTGAATGACAAACTAACTGCTCC 60.083 45.833 0.00 0.00 0.00 4.70
1730 2289 2.494059 TGACAAACTAACTGCTCCAGC 58.506 47.619 0.00 0.00 42.50 4.85
1749 2308 0.603065 CGGTGGATGCGATATCTCCA 59.397 55.000 7.86 7.86 36.73 3.86
1751 2310 1.674221 GGTGGATGCGATATCTCCAGC 60.674 57.143 19.84 19.84 46.61 4.85
1767 2326 1.680989 AGCTGCTGGCATGCATGAA 60.681 52.632 30.64 15.85 44.79 2.57
1818 2377 3.421919 TGGTGCATTCAGATGAAGTCA 57.578 42.857 1.32 0.00 37.48 3.41
1855 2414 2.937519 TGAGCGAGGTCATAGAGATGT 58.062 47.619 0.35 0.00 34.41 3.06
1869 2428 2.108952 AGAGATGTTGGAAGGTGGCTTT 59.891 45.455 0.00 0.00 0.00 3.51
1876 2435 1.133199 TGGAAGGTGGCTTTGATGGTT 60.133 47.619 0.00 0.00 0.00 3.67
1921 2480 3.188786 GCGACGATGAGCACACCC 61.189 66.667 0.00 0.00 0.00 4.61
1959 2518 2.093447 CCCTTTGTTATCCGAGCTGACT 60.093 50.000 0.00 0.00 0.00 3.41
1981 2540 1.780309 AGATCTCGGAGGAGGATGAGT 59.220 52.381 4.96 0.00 40.85 3.41
1982 2541 2.983192 AGATCTCGGAGGAGGATGAGTA 59.017 50.000 4.96 0.00 40.85 2.59
1983 2542 2.940994 TCTCGGAGGAGGATGAGTAG 57.059 55.000 4.96 0.00 40.85 2.57
1984 2543 1.202830 TCTCGGAGGAGGATGAGTAGC 60.203 57.143 4.96 0.00 40.85 3.58
1985 2544 0.551396 TCGGAGGAGGATGAGTAGCA 59.449 55.000 0.00 0.00 0.00 3.49
1986 2545 1.145945 TCGGAGGAGGATGAGTAGCAT 59.854 52.381 0.00 0.00 40.77 3.79
1987 2546 2.375509 TCGGAGGAGGATGAGTAGCATA 59.624 50.000 0.00 0.00 37.34 3.14
1988 2547 3.010696 TCGGAGGAGGATGAGTAGCATAT 59.989 47.826 0.00 0.00 37.34 1.78
1989 2548 3.130164 CGGAGGAGGATGAGTAGCATATG 59.870 52.174 0.00 0.00 37.34 1.78
1991 2550 4.081752 GGAGGAGGATGAGTAGCATATGTG 60.082 50.000 4.29 0.00 37.34 3.21
1993 2552 4.282957 AGGAGGATGAGTAGCATATGTGTG 59.717 45.833 4.29 0.00 37.34 3.82
1994 2553 4.039730 GGAGGATGAGTAGCATATGTGTGT 59.960 45.833 4.29 0.00 37.34 3.72
1995 2554 4.953667 AGGATGAGTAGCATATGTGTGTG 58.046 43.478 4.29 0.00 37.34 3.82
1996 2555 4.406972 AGGATGAGTAGCATATGTGTGTGT 59.593 41.667 4.29 0.00 37.34 3.72
1997 2556 4.509230 GGATGAGTAGCATATGTGTGTGTG 59.491 45.833 4.29 0.00 37.34 3.82
1999 2558 4.244862 TGAGTAGCATATGTGTGTGTGTG 58.755 43.478 4.29 0.00 0.00 3.82
2000 2559 4.245660 GAGTAGCATATGTGTGTGTGTGT 58.754 43.478 4.29 0.00 0.00 3.72
2001 2560 3.996363 AGTAGCATATGTGTGTGTGTGTG 59.004 43.478 4.29 0.00 0.00 3.82
2002 2561 2.849942 AGCATATGTGTGTGTGTGTGT 58.150 42.857 4.29 0.00 0.00 3.72
2006 2565 2.106477 ATGTGTGTGTGTGTGTGTGA 57.894 45.000 0.00 0.00 0.00 3.58
2007 2566 2.106477 TGTGTGTGTGTGTGTGTGAT 57.894 45.000 0.00 0.00 0.00 3.06
2008 2567 2.431454 TGTGTGTGTGTGTGTGTGATT 58.569 42.857 0.00 0.00 0.00 2.57
2011 2570 4.455877 TGTGTGTGTGTGTGTGTGATTTAA 59.544 37.500 0.00 0.00 0.00 1.52
2026 3987 9.725019 TGTGTGATTTAATGTCTCAAGTCTTAT 57.275 29.630 0.00 0.00 0.00 1.73
2170 4131 7.040340 CCTGGAAGACACATACTATTCGAGTAT 60.040 40.741 0.00 0.00 44.31 2.12
2227 5776 3.624777 AGCATGATTACAGGGTTGAAGG 58.375 45.455 0.00 0.00 34.97 3.46
2234 5783 6.969043 TGATTACAGGGTTGAAGGAATGTAT 58.031 36.000 0.00 0.00 0.00 2.29
2242 5791 8.028938 CAGGGTTGAAGGAATGTATTAAACTTG 58.971 37.037 0.00 0.00 0.00 3.16
2267 5816 5.940192 GTGGACACACACAAAAGATATGA 57.060 39.130 0.00 0.00 46.90 2.15
2307 5856 2.719426 ATGTTTTCTTCAGCTGCTGC 57.281 45.000 24.38 7.62 40.05 5.25
2318 5867 2.474561 GCTGCTGCTGCTGTTATGA 58.525 52.632 22.10 0.00 39.81 2.15
2319 5868 0.806868 GCTGCTGCTGCTGTTATGAA 59.193 50.000 22.10 0.00 39.81 2.57
2320 5869 1.467035 GCTGCTGCTGCTGTTATGAAC 60.467 52.381 22.10 2.21 39.81 3.18
2321 5870 1.808343 CTGCTGCTGCTGTTATGAACA 59.192 47.619 17.00 0.00 40.48 3.18
2333 5882 1.656587 TATGAACAGACCCAGCCTGT 58.343 50.000 0.00 0.00 45.88 4.00
2334 5883 0.326264 ATGAACAGACCCAGCCTGTC 59.674 55.000 0.00 0.00 43.42 3.51
2335 5884 1.003233 GAACAGACCCAGCCTGTCC 60.003 63.158 0.00 0.00 43.42 4.02
2336 5885 1.462238 AACAGACCCAGCCTGTCCT 60.462 57.895 0.00 0.00 43.42 3.85
2337 5886 1.772819 AACAGACCCAGCCTGTCCTG 61.773 60.000 0.00 0.00 43.42 3.86
2338 5887 2.205462 AGACCCAGCCTGTCCTGT 59.795 61.111 0.00 0.00 33.09 4.00
2340 5889 0.043334 AGACCCAGCCTGTCCTGTAT 59.957 55.000 0.00 0.00 33.09 2.29
2341 5890 0.179000 GACCCAGCCTGTCCTGTATG 59.821 60.000 0.00 0.00 0.00 2.39
2347 5937 3.430929 CCAGCCTGTCCTGTATGAAGTAC 60.431 52.174 0.00 0.00 0.00 2.73
2360 5950 4.553330 ATGAAGTACGAACCCTTGTGAT 57.447 40.909 0.00 0.00 0.00 3.06
2365 5955 4.253685 AGTACGAACCCTTGTGATTGATG 58.746 43.478 0.00 0.00 0.00 3.07
2374 5964 5.774690 ACCCTTGTGATTGATGAAAAGCTTA 59.225 36.000 0.00 0.00 0.00 3.09
2376 5966 6.071728 CCCTTGTGATTGATGAAAAGCTTAGT 60.072 38.462 0.00 0.00 0.00 2.24
2384 5974 5.240891 TGATGAAAAGCTTAGTCTCAGTGG 58.759 41.667 0.00 0.00 0.00 4.00
2392 5982 3.640967 GCTTAGTCTCAGTGGATGGAGAT 59.359 47.826 0.00 0.00 41.77 2.75
2393 5983 4.501229 GCTTAGTCTCAGTGGATGGAGATG 60.501 50.000 0.00 0.00 41.77 2.90
2414 6006 6.431543 AGATGATGATGATTGCAGAGGAATTC 59.568 38.462 0.00 0.00 0.00 2.17
2425 6017 0.169672 GAGGAATTCGTGTCGACGGA 59.830 55.000 11.62 8.07 46.11 4.69
2426 6018 0.109412 AGGAATTCGTGTCGACGGAC 60.109 55.000 11.62 3.35 46.11 4.79
2444 6036 4.220821 ACGGACATGTTCACACTTCTATCT 59.779 41.667 4.68 0.00 0.00 1.98
2445 6037 5.417894 ACGGACATGTTCACACTTCTATCTA 59.582 40.000 4.68 0.00 0.00 1.98
2487 6079 4.455533 TCTTGTAACCATGAATGTGAGTGC 59.544 41.667 0.00 0.00 0.00 4.40
2491 6083 3.052455 ACCATGAATGTGAGTGCGTAA 57.948 42.857 0.00 0.00 0.00 3.18
2494 6086 4.180817 CCATGAATGTGAGTGCGTAACTA 58.819 43.478 0.00 0.00 40.07 2.24
2497 6089 4.623002 TGAATGTGAGTGCGTAACTACAA 58.377 39.130 0.00 0.00 40.07 2.41
2498 6090 4.446385 TGAATGTGAGTGCGTAACTACAAC 59.554 41.667 0.00 0.00 40.07 3.32
2500 6092 2.101082 TGTGAGTGCGTAACTACAACCA 59.899 45.455 0.00 0.00 40.07 3.67
2508 6100 4.022155 TGCGTAACTACAACCATAGTGTCA 60.022 41.667 0.00 0.00 35.53 3.58
2573 6272 6.151144 TCAGCTCAGGGTAAGAAAAATTAAGC 59.849 38.462 0.00 0.00 0.00 3.09
2576 6275 6.151144 GCTCAGGGTAAGAAAAATTAAGCTGA 59.849 38.462 0.00 0.00 0.00 4.26
2592 6292 3.418995 AGCTGATTTCTTGCTGTCACAT 58.581 40.909 0.00 0.00 35.54 3.21
2600 6300 1.542472 CTTGCTGTCACATGCATTCCA 59.458 47.619 0.00 0.00 39.07 3.53
2608 6308 6.237996 GCTGTCACATGCATTCCAATTTAATG 60.238 38.462 0.00 6.08 37.39 1.90
2609 6309 6.932947 TGTCACATGCATTCCAATTTAATGA 58.067 32.000 12.44 1.74 36.61 2.57
2610 6310 7.557724 TGTCACATGCATTCCAATTTAATGAT 58.442 30.769 12.44 3.45 36.61 2.45
2625 6326 8.545420 CAATTTAATGATGGTAATTTCAGCAGC 58.455 33.333 5.83 0.00 33.91 5.25
2633 6334 6.832520 TGGTAATTTCAGCAGCATAGAAAA 57.167 33.333 10.51 0.00 35.20 2.29
2643 6344 6.809689 TCAGCAGCATAGAAAACATTCAAATG 59.190 34.615 0.00 1.20 42.10 2.32
2646 6347 6.035327 GCAGCATAGAAAACATTCAAATGACC 59.965 38.462 9.62 0.00 39.67 4.02
2666 6371 3.629398 ACCTCAAAGTTCAGCAGAAACTG 59.371 43.478 0.00 0.00 39.12 3.16
2697 6402 0.255890 AATGCAACCTCCTGCCGTAT 59.744 50.000 0.00 0.00 41.90 3.06
2699 6404 1.078426 GCAACCTCCTGCCGTATGT 60.078 57.895 0.00 0.00 36.25 2.29
2708 6413 1.369091 CTGCCGTATGTGTTCCTGCC 61.369 60.000 0.00 0.00 0.00 4.85
2719 6424 1.346395 TGTTCCTGCCATTACGAGTGT 59.654 47.619 0.00 0.00 0.00 3.55
2720 6425 1.732259 GTTCCTGCCATTACGAGTGTG 59.268 52.381 0.00 0.00 0.00 3.82
2721 6426 1.262417 TCCTGCCATTACGAGTGTGA 58.738 50.000 0.00 0.00 0.00 3.58
2724 6429 3.068165 TCCTGCCATTACGAGTGTGATAG 59.932 47.826 0.00 0.00 0.00 2.08
2726 6431 4.037565 CCTGCCATTACGAGTGTGATAGTA 59.962 45.833 0.00 0.00 0.00 1.82
2727 6432 5.183014 TGCCATTACGAGTGTGATAGTAG 57.817 43.478 0.00 0.00 0.00 2.57
2729 6434 5.213675 GCCATTACGAGTGTGATAGTAGAC 58.786 45.833 0.00 0.00 0.00 2.59
2736 6441 2.356382 AGTGTGATAGTAGACTCGCTGC 59.644 50.000 0.00 0.00 0.00 5.25
2737 6442 1.676529 TGTGATAGTAGACTCGCTGCC 59.323 52.381 0.00 0.00 0.00 4.85
2739 6444 0.945813 GATAGTAGACTCGCTGCCGT 59.054 55.000 0.00 0.00 35.54 5.68
2740 6445 0.945813 ATAGTAGACTCGCTGCCGTC 59.054 55.000 8.24 8.24 35.54 4.79
2741 6446 1.094073 TAGTAGACTCGCTGCCGTCC 61.094 60.000 11.62 0.79 35.54 4.79
2742 6447 2.360726 TAGACTCGCTGCCGTCCA 60.361 61.111 11.62 0.00 35.54 4.02
2743 6448 2.407428 TAGACTCGCTGCCGTCCAG 61.407 63.158 11.62 0.00 44.67 3.86
2744 6449 4.057428 GACTCGCTGCCGTCCAGT 62.057 66.667 5.67 0.00 43.71 4.00
2745 6450 3.973267 GACTCGCTGCCGTCCAGTC 62.973 68.421 5.67 1.40 43.71 3.51
2746 6451 4.803426 CTCGCTGCCGTCCAGTCC 62.803 72.222 0.00 0.00 43.71 3.85
2754 6459 4.003788 CGTCCAGTCCCGCACCTT 62.004 66.667 0.00 0.00 0.00 3.50
2755 6460 2.047179 GTCCAGTCCCGCACCTTC 60.047 66.667 0.00 0.00 0.00 3.46
2756 6461 2.525629 TCCAGTCCCGCACCTTCA 60.526 61.111 0.00 0.00 0.00 3.02
2757 6462 2.046892 CCAGTCCCGCACCTTCAG 60.047 66.667 0.00 0.00 0.00 3.02
2758 6463 2.743928 CAGTCCCGCACCTTCAGC 60.744 66.667 0.00 0.00 0.00 4.26
2759 6464 3.241530 AGTCCCGCACCTTCAGCA 61.242 61.111 0.00 0.00 0.00 4.41
2760 6465 2.281484 GTCCCGCACCTTCAGCAA 60.281 61.111 0.00 0.00 0.00 3.91
2764 6469 1.173043 CCCGCACCTTCAGCAATAAA 58.827 50.000 0.00 0.00 0.00 1.40
2780 6485 2.238847 TAAACAGCCGCTGCGAGGAT 62.239 55.000 25.45 2.92 44.33 3.24
2806 6514 2.486191 CCTCTGGCTCATATGAACCACC 60.486 54.545 21.47 13.49 35.54 4.61
2808 6516 2.092968 TCTGGCTCATATGAACCACCAC 60.093 50.000 21.47 0.00 35.54 4.16
2822 6530 4.112634 ACCACCACAAATAACTGGACAT 57.887 40.909 0.00 0.00 0.00 3.06
2846 6554 2.351276 CAACCTCGTTCCCAGGGG 59.649 66.667 5.33 0.92 35.01 4.79
2867 6575 2.952714 CTTGTTCTCAGGGCAAGGG 58.047 57.895 0.00 0.00 36.79 3.95
2882 6590 2.487265 GCAAGGGAAGTCCAGTCTTTGA 60.487 50.000 0.00 0.00 38.24 2.69
2888 6596 2.751166 AGTCCAGTCTTTGACATCCG 57.249 50.000 0.46 0.00 34.60 4.18
2894 6602 4.455533 TCCAGTCTTTGACATCCGAATTTG 59.544 41.667 0.46 0.00 34.60 2.32
2954 6663 3.071479 TGTAGACCGAGAACAAATTGCC 58.929 45.455 0.00 0.00 0.00 4.52
2958 6667 2.228822 GACCGAGAACAAATTGCCACAT 59.771 45.455 0.00 0.00 0.00 3.21
2968 6677 4.644234 ACAAATTGCCACATCATTCCGATA 59.356 37.500 0.00 0.00 31.20 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.823356 AGTGCACCAAAGTTCGCCAT 60.823 50.000 14.63 0.00 0.00 4.40
6 7 1.199624 CAAAGTGCACCAAAGTTCGC 58.800 50.000 14.63 0.00 0.00 4.70
8 9 3.584834 ACAACAAAGTGCACCAAAGTTC 58.415 40.909 14.63 0.00 0.00 3.01
9 10 3.676291 ACAACAAAGTGCACCAAAGTT 57.324 38.095 14.63 10.75 0.00 2.66
10 11 3.584834 GAACAACAAAGTGCACCAAAGT 58.415 40.909 14.63 4.53 0.00 2.66
11 12 2.929398 GGAACAACAAAGTGCACCAAAG 59.071 45.455 14.63 3.83 0.00 2.77
12 13 2.300152 TGGAACAACAAAGTGCACCAAA 59.700 40.909 14.63 0.00 31.92 3.28
13 14 1.895798 TGGAACAACAAAGTGCACCAA 59.104 42.857 14.63 0.00 31.92 3.67
53 54 2.944129 AGAGTAGCTAGCAGGAAGAGG 58.056 52.381 18.83 0.00 0.00 3.69
54 55 4.277423 GGTAAGAGTAGCTAGCAGGAAGAG 59.723 50.000 18.83 0.00 0.00 2.85
60 329 1.609555 CCGGGTAAGAGTAGCTAGCAG 59.390 57.143 18.83 0.00 0.00 4.24
62 331 1.608109 GTCCGGGTAAGAGTAGCTAGC 59.392 57.143 6.62 6.62 0.00 3.42
65 334 0.750911 CCGTCCGGGTAAGAGTAGCT 60.751 60.000 0.00 0.00 0.00 3.32
82 351 8.685427 AGTTCATCTGATCTATCATCTATTCCG 58.315 37.037 0.00 0.00 36.02 4.30
97 366 9.950496 ACTGACAAATAGTAAAGTTCATCTGAT 57.050 29.630 0.00 0.00 0.00 2.90
105 374 8.747538 ACCTTCAACTGACAAATAGTAAAGTT 57.252 30.769 0.00 0.00 37.58 2.66
106 375 7.170998 CGACCTTCAACTGACAAATAGTAAAGT 59.829 37.037 0.00 0.00 0.00 2.66
109 378 6.518493 ACGACCTTCAACTGACAAATAGTAA 58.482 36.000 0.00 0.00 0.00 2.24
110 379 6.092955 ACGACCTTCAACTGACAAATAGTA 57.907 37.500 0.00 0.00 0.00 1.82
113 382 4.513692 CCAACGACCTTCAACTGACAAATA 59.486 41.667 0.00 0.00 0.00 1.40
114 383 3.315191 CCAACGACCTTCAACTGACAAAT 59.685 43.478 0.00 0.00 0.00 2.32
119 388 0.534203 GCCCAACGACCTTCAACTGA 60.534 55.000 0.00 0.00 0.00 3.41
120 389 0.817634 TGCCCAACGACCTTCAACTG 60.818 55.000 0.00 0.00 0.00 3.16
121 390 0.110486 ATGCCCAACGACCTTCAACT 59.890 50.000 0.00 0.00 0.00 3.16
128 397 1.080569 CAAAGCATGCCCAACGACC 60.081 57.895 15.66 0.00 0.00 4.79
129 398 4.557942 CAAAGCATGCCCAACGAC 57.442 55.556 15.66 0.00 0.00 4.34
147 419 3.179830 ACTACTGCTCGCGAACAATTAG 58.820 45.455 13.87 17.10 0.00 1.73
168 440 9.918630 GGGCTTGTATCGACTAAGTATTATTTA 57.081 33.333 0.00 0.00 0.00 1.40
169 441 7.597743 CGGGCTTGTATCGACTAAGTATTATTT 59.402 37.037 0.00 0.00 0.00 1.40
172 444 5.563475 GCGGGCTTGTATCGACTAAGTATTA 60.563 44.000 0.00 0.00 0.00 0.98
175 447 2.033801 GCGGGCTTGTATCGACTAAGTA 59.966 50.000 0.00 0.00 0.00 2.24
176 448 1.202382 GCGGGCTTGTATCGACTAAGT 60.202 52.381 0.00 0.00 0.00 2.24
177 449 1.067212 AGCGGGCTTGTATCGACTAAG 59.933 52.381 0.00 0.00 0.00 2.18
178 450 1.066605 GAGCGGGCTTGTATCGACTAA 59.933 52.381 0.00 0.00 0.00 2.24
183 455 1.144057 AAGGAGCGGGCTTGTATCG 59.856 57.895 0.00 0.00 0.00 2.92
185 457 1.452108 GCAAGGAGCGGGCTTGTAT 60.452 57.895 0.00 0.00 0.00 2.29
196 468 0.603707 TTTCGCACTCAGGCAAGGAG 60.604 55.000 0.00 0.00 38.36 3.69
198 470 0.667993 TTTTTCGCACTCAGGCAAGG 59.332 50.000 0.00 0.00 0.00 3.61
200 472 2.360483 TGAATTTTTCGCACTCAGGCAA 59.640 40.909 0.00 0.00 0.00 4.52
231 503 5.872617 CACAATAATTACGGTCAGTCCAGAA 59.127 40.000 0.00 0.00 35.57 3.02
237 509 9.607988 TTGAATATCACAATAATTACGGTCAGT 57.392 29.630 0.00 0.00 0.00 3.41
246 518 9.888878 CGCAAGAGATTGAATATCACAATAATT 57.111 29.630 2.40 0.00 37.56 1.40
247 519 8.019669 GCGCAAGAGATTGAATATCACAATAAT 58.980 33.333 0.30 2.20 37.56 1.28
257 529 2.607635 GGAACGCGCAAGAGATTGAATA 59.392 45.455 5.73 0.00 40.82 1.75
260 532 0.037326 AGGAACGCGCAAGAGATTGA 60.037 50.000 5.73 0.00 40.82 2.57
261 533 0.095935 CAGGAACGCGCAAGAGATTG 59.904 55.000 5.73 0.00 40.82 2.67
262 534 0.320771 ACAGGAACGCGCAAGAGATT 60.321 50.000 5.73 0.00 40.82 2.40
264 536 1.664649 CACAGGAACGCGCAAGAGA 60.665 57.895 5.73 0.00 40.82 3.10
265 537 2.671177 CCACAGGAACGCGCAAGAG 61.671 63.158 5.73 0.00 45.38 2.85
271 543 0.999406 CAAGTATCCACAGGAACGCG 59.001 55.000 3.53 3.53 34.34 6.01
274 546 1.751437 GGCCAAGTATCCACAGGAAC 58.249 55.000 0.00 0.00 34.34 3.62
294 566 0.169009 GAAGCATCAAAGGGTGACGC 59.831 55.000 0.00 0.00 45.93 5.19
295 567 1.522668 TGAAGCATCAAAGGGTGACG 58.477 50.000 0.00 0.00 39.72 4.35
297 569 3.438216 TGATGAAGCATCAAAGGGTGA 57.562 42.857 7.58 0.00 46.17 4.02
310 582 4.763793 ACTGTTTGTCCAGGATTGATGAAG 59.236 41.667 0.00 0.00 36.75 3.02
314 586 5.010282 GGTAACTGTTTGTCCAGGATTGAT 58.990 41.667 0.00 0.00 36.75 2.57
323 595 4.314740 TGCATTTGGTAACTGTTTGTCC 57.685 40.909 0.00 0.54 37.61 4.02
333 605 6.811253 ATCTTCGTAACTTGCATTTGGTAA 57.189 33.333 0.00 0.00 0.00 2.85
337 609 6.176975 TGGTATCTTCGTAACTTGCATTTG 57.823 37.500 0.00 0.00 0.00 2.32
338 610 6.677920 GCATGGTATCTTCGTAACTTGCATTT 60.678 38.462 0.00 0.00 40.32 2.32
343 615 4.870426 AGTGCATGGTATCTTCGTAACTTG 59.130 41.667 0.00 0.00 0.00 3.16
352 654 5.439721 TGCTTATGAAGTGCATGGTATCTT 58.560 37.500 0.00 0.00 37.87 2.40
358 660 2.100252 CCCTTGCTTATGAAGTGCATGG 59.900 50.000 10.78 10.78 45.62 3.66
368 670 5.163622 ACGAACATGAAATCCCTTGCTTATG 60.164 40.000 0.00 0.00 0.00 1.90
370 672 4.155826 CACGAACATGAAATCCCTTGCTTA 59.844 41.667 0.00 0.00 0.00 3.09
374 676 4.229096 CAACACGAACATGAAATCCCTTG 58.771 43.478 0.00 0.00 0.00 3.61
385 687 0.179067 ACCACGACCAACACGAACAT 60.179 50.000 0.00 0.00 34.70 2.71
390 692 0.247894 CAAACACCACGACCAACACG 60.248 55.000 0.00 0.00 0.00 4.49
392 694 1.658686 GCCAAACACCACGACCAACA 61.659 55.000 0.00 0.00 0.00 3.33
393 695 1.065109 GCCAAACACCACGACCAAC 59.935 57.895 0.00 0.00 0.00 3.77
396 698 2.604174 CGAGCCAAACACCACGACC 61.604 63.158 0.00 0.00 0.00 4.79
397 699 1.593209 TCGAGCCAAACACCACGAC 60.593 57.895 0.00 0.00 0.00 4.34
399 701 1.831389 CTGTCGAGCCAAACACCACG 61.831 60.000 0.00 0.00 0.00 4.94
400 702 1.941812 CTGTCGAGCCAAACACCAC 59.058 57.895 0.00 0.00 0.00 4.16
410 712 0.802607 CCGTAGAAAGGCTGTCGAGC 60.803 60.000 0.00 0.00 45.40 5.03
419 721 3.939066 ACCTTTGATGACCGTAGAAAGG 58.061 45.455 0.00 0.00 45.51 3.11
425 727 1.349688 AGGCAACCTTTGATGACCGTA 59.650 47.619 0.00 0.00 37.17 4.02
427 729 0.523072 CAGGCAACCTTTGATGACCG 59.477 55.000 0.00 0.00 37.17 4.79
429 731 2.622942 TGTTCAGGCAACCTTTGATGAC 59.377 45.455 0.00 0.00 33.51 3.06
439 741 3.803778 CCTTGTTGAATTGTTCAGGCAAC 59.196 43.478 0.00 0.00 41.38 4.17
440 742 3.450457 ACCTTGTTGAATTGTTCAGGCAA 59.550 39.130 9.61 9.61 41.38 4.52
447 749 4.202050 GCAGACTCACCTTGTTGAATTGTT 60.202 41.667 0.00 0.00 0.00 2.83
471 773 1.189752 GACACTCCATCTGCCAGAGA 58.810 55.000 0.00 0.00 34.25 3.10
477 779 1.134995 TCATCGTGACACTCCATCTGC 60.135 52.381 3.68 0.00 0.00 4.26
479 781 2.728007 TCTCATCGTGACACTCCATCT 58.272 47.619 3.68 0.00 0.00 2.90
480 782 3.182967 GTTCTCATCGTGACACTCCATC 58.817 50.000 3.68 0.00 0.00 3.51
481 783 2.093973 GGTTCTCATCGTGACACTCCAT 60.094 50.000 3.68 0.00 0.00 3.41
491 793 1.343465 AGAAACACGGGTTCTCATCGT 59.657 47.619 2.08 0.00 35.82 3.73
492 794 2.080286 AGAAACACGGGTTCTCATCG 57.920 50.000 2.08 0.00 35.82 3.84
493 795 4.571176 GGAATAGAAACACGGGTTCTCATC 59.429 45.833 2.08 0.00 35.82 2.92
494 796 4.225267 AGGAATAGAAACACGGGTTCTCAT 59.775 41.667 2.08 0.00 35.82 2.90
495 797 3.581332 AGGAATAGAAACACGGGTTCTCA 59.419 43.478 2.08 0.00 35.82 3.27
498 800 3.268330 GGAGGAATAGAAACACGGGTTC 58.732 50.000 2.08 0.00 35.82 3.62
499 801 2.026542 GGGAGGAATAGAAACACGGGTT 60.027 50.000 0.00 0.00 39.43 4.11
500 802 1.558294 GGGAGGAATAGAAACACGGGT 59.442 52.381 0.00 0.00 0.00 5.28
501 803 1.472728 CGGGAGGAATAGAAACACGGG 60.473 57.143 0.00 0.00 0.00 5.28
502 804 1.206371 ACGGGAGGAATAGAAACACGG 59.794 52.381 0.00 0.00 0.00 4.94
503 805 2.667473 ACGGGAGGAATAGAAACACG 57.333 50.000 0.00 0.00 0.00 4.49
504 806 3.268330 GGAACGGGAGGAATAGAAACAC 58.732 50.000 0.00 0.00 0.00 3.32
505 807 3.622166 GGAACGGGAGGAATAGAAACA 57.378 47.619 0.00 0.00 0.00 2.83
522 824 4.645588 AGTTGGTCATAAAACAAACCGGAA 59.354 37.500 9.46 0.00 34.19 4.30
524 827 4.577834 AGTTGGTCATAAAACAAACCGG 57.422 40.909 0.00 0.00 34.19 5.28
547 850 5.767277 ATTCAAGAGGGGATGCAATTTTT 57.233 34.783 0.00 0.00 0.00 1.94
578 881 3.983344 GTCACTGCAAATCACCATTGAAC 59.017 43.478 0.00 0.00 34.61 3.18
586 889 3.141398 TCCTGAAGTCACTGCAAATCAC 58.859 45.455 0.00 0.00 0.00 3.06
590 893 1.949525 GCTTCCTGAAGTCACTGCAAA 59.050 47.619 8.57 0.00 40.45 3.68
597 900 2.039480 AGATGCTTGCTTCCTGAAGTCA 59.961 45.455 8.57 4.74 40.45 3.41
600 903 2.015587 GGAGATGCTTGCTTCCTGAAG 58.984 52.381 2.48 2.48 41.24 3.02
614 917 4.508461 TTCATTGTGTTTGCAGGAGATG 57.492 40.909 0.00 0.00 0.00 2.90
629 932 3.680642 AAGCACGAATCGGATTCATTG 57.319 42.857 25.63 21.73 39.22 2.82
630 933 4.701956 AAAAGCACGAATCGGATTCATT 57.298 36.364 25.63 12.37 39.22 2.57
657 960 6.508088 GCATTTTAAGAACGGTATCTCACTCG 60.508 42.308 0.00 0.00 0.00 4.18
665 968 7.627340 CGTTCATAGCATTTTAAGAACGGTAT 58.373 34.615 15.28 1.36 44.48 2.73
684 987 2.967599 TACTGCATCAGAGCGTTCAT 57.032 45.000 1.01 0.00 37.31 2.57
685 988 2.231235 TCTTACTGCATCAGAGCGTTCA 59.769 45.455 1.01 0.00 37.31 3.18
686 989 2.881074 TCTTACTGCATCAGAGCGTTC 58.119 47.619 0.29 0.00 37.31 3.95
689 992 2.886081 ACTTCTTACTGCATCAGAGCG 58.114 47.619 0.29 0.00 37.31 5.03
691 994 8.932945 TTACATAACTTCTTACTGCATCAGAG 57.067 34.615 0.29 0.00 35.18 3.35
701 1004 6.952083 CGCGGTTTTCTTACATAACTTCTTAC 59.048 38.462 0.00 0.00 0.00 2.34
702 1005 6.646240 ACGCGGTTTTCTTACATAACTTCTTA 59.354 34.615 12.47 0.00 0.00 2.10
703 1006 5.467735 ACGCGGTTTTCTTACATAACTTCTT 59.532 36.000 12.47 0.00 0.00 2.52
704 1007 4.992951 ACGCGGTTTTCTTACATAACTTCT 59.007 37.500 12.47 0.00 0.00 2.85
705 1008 5.119743 AGACGCGGTTTTCTTACATAACTTC 59.880 40.000 12.47 0.00 0.00 3.01
706 1009 4.992951 AGACGCGGTTTTCTTACATAACTT 59.007 37.500 12.47 0.00 0.00 2.66
707 1010 4.563061 AGACGCGGTTTTCTTACATAACT 58.437 39.130 12.47 0.00 0.00 2.24
708 1011 4.489841 CGAGACGCGGTTTTCTTACATAAC 60.490 45.833 12.47 0.00 36.03 1.89
709 1012 3.609373 CGAGACGCGGTTTTCTTACATAA 59.391 43.478 12.47 0.00 36.03 1.90
710 1013 3.173599 CGAGACGCGGTTTTCTTACATA 58.826 45.455 12.47 0.00 36.03 2.29
711 1014 1.990563 CGAGACGCGGTTTTCTTACAT 59.009 47.619 12.47 0.00 36.03 2.29
712 1015 1.269206 ACGAGACGCGGTTTTCTTACA 60.269 47.619 12.47 0.00 46.49 2.41
713 1016 1.123756 CACGAGACGCGGTTTTCTTAC 59.876 52.381 12.47 0.00 46.49 2.34
716 1019 0.311790 TACACGAGACGCGGTTTTCT 59.688 50.000 12.47 3.27 46.49 2.52
717 1020 1.058695 CATACACGAGACGCGGTTTTC 59.941 52.381 12.47 0.00 46.49 2.29
720 1023 0.731514 CACATACACGAGACGCGGTT 60.732 55.000 12.47 0.00 46.49 4.44
722 1025 1.872234 CCACATACACGAGACGCGG 60.872 63.158 12.47 0.00 46.49 6.46
726 1029 2.066262 CCACAACCACATACACGAGAC 58.934 52.381 0.00 0.00 0.00 3.36
728 1031 1.270625 ACCCACAACCACATACACGAG 60.271 52.381 0.00 0.00 0.00 4.18
731 1034 6.679392 GCATTATAACCCACAACCACATACAC 60.679 42.308 0.00 0.00 0.00 2.90
741 1044 9.241919 CAGATATTATGGCATTATAACCCACAA 57.758 33.333 4.78 4.90 0.00 3.33
742 1045 7.339212 GCAGATATTATGGCATTATAACCCACA 59.661 37.037 4.78 0.00 0.00 4.17
745 1048 9.799106 ATAGCAGATATTATGGCATTATAACCC 57.201 33.333 4.78 1.07 0.00 4.11
750 1053 9.910267 TGTCAATAGCAGATATTATGGCATTAT 57.090 29.630 4.78 4.46 32.61 1.28
751 1054 9.910267 ATGTCAATAGCAGATATTATGGCATTA 57.090 29.630 4.78 0.00 27.26 1.90
752 1055 8.818622 ATGTCAATAGCAGATATTATGGCATT 57.181 30.769 4.78 0.00 27.26 3.56
753 1056 8.050930 TGATGTCAATAGCAGATATTATGGCAT 58.949 33.333 4.88 4.88 32.22 4.40
754 1057 7.335171 GTGATGTCAATAGCAGATATTATGGCA 59.665 37.037 0.00 0.00 32.61 4.92
766 1069 5.263599 AGGAATTTGGTGATGTCAATAGCA 58.736 37.500 0.00 0.00 0.00 3.49
791 1094 5.559148 AAAGGAAATTGCCACATACCAAA 57.441 34.783 4.92 0.00 0.00 3.28
802 1105 7.959109 GCTGTGATGATTTAAAAAGGAAATTGC 59.041 33.333 0.00 0.00 0.00 3.56
803 1106 9.211485 AGCTGTGATGATTTAAAAAGGAAATTG 57.789 29.630 0.00 0.00 0.00 2.32
816 1120 9.445878 CATACCAGATTATAGCTGTGATGATTT 57.554 33.333 0.00 0.00 30.84 2.17
841 1145 8.727910 CCGTAGTTAGACTGTCATATATAAGCA 58.272 37.037 10.88 0.00 0.00 3.91
842 1146 8.728833 ACCGTAGTTAGACTGTCATATATAAGC 58.271 37.037 10.88 0.00 0.00 3.09
868 1425 2.949177 ACTGCACACAAGTTGGGATA 57.051 45.000 13.26 0.00 0.00 2.59
870 1427 1.488812 AGTACTGCACACAAGTTGGGA 59.511 47.619 13.26 0.00 0.00 4.37
874 1431 3.738982 TGCATAGTACTGCACACAAGTT 58.261 40.909 5.39 0.00 46.76 2.66
953 1512 3.884895 ACCGCATCAATTGTGATCCTTA 58.115 40.909 5.13 0.00 42.88 2.69
993 1552 1.142314 CGGGCCAATCATTTGCTGG 59.858 57.895 4.39 0.00 0.00 4.85
996 1555 2.288395 CCTTATCGGGCCAATCATTTGC 60.288 50.000 4.39 0.00 0.00 3.68
1028 1587 3.686241 GCTTGTGACTGCAATGATGTCTA 59.314 43.478 4.86 0.00 0.00 2.59
1086 1645 1.699634 AGCACACCCTTGTACACAGAT 59.300 47.619 0.00 0.00 33.30 2.90
1094 1653 1.004745 CTGGGAATAGCACACCCTTGT 59.995 52.381 0.00 0.00 43.59 3.16
1115 1674 4.471904 TTCACAGCAATACGGAGATCTT 57.528 40.909 0.00 0.00 0.00 2.40
1116 1675 4.471904 TTTCACAGCAATACGGAGATCT 57.528 40.909 0.00 0.00 0.00 2.75
1117 1676 5.505286 CATTTTCACAGCAATACGGAGATC 58.495 41.667 0.00 0.00 0.00 2.75
1120 1679 3.127548 AGCATTTTCACAGCAATACGGAG 59.872 43.478 0.00 0.00 0.00 4.63
1124 1683 6.128172 ACTCTGTAGCATTTTCACAGCAATAC 60.128 38.462 0.00 0.00 39.60 1.89
1134 1693 5.064071 GCTGGAGTTACTCTGTAGCATTTTC 59.936 44.000 21.79 2.36 34.65 2.29
1144 1703 2.462456 TTGCAGCTGGAGTTACTCTG 57.538 50.000 17.12 3.80 0.00 3.35
1147 1706 1.630369 TCCATTGCAGCTGGAGTTACT 59.370 47.619 17.12 0.00 37.87 2.24
1157 1716 4.650754 ATGAAATCTTCTCCATTGCAGC 57.349 40.909 0.00 0.00 0.00 5.25
1179 1738 4.093743 TGCCAATGGTAGAGACTTCACTA 58.906 43.478 0.00 0.00 0.00 2.74
1230 1789 0.103937 CCTCTGAGCAGAACCCGATC 59.896 60.000 0.00 0.00 36.94 3.69
1233 1792 0.967887 TCTCCTCTGAGCAGAACCCG 60.968 60.000 0.00 0.00 38.58 5.28
1302 1861 5.187967 ACTCTTCTCGGGTGAAAAGATGTAT 59.812 40.000 0.00 0.00 0.00 2.29
1315 1874 2.814336 CCCAAGAAAAACTCTTCTCGGG 59.186 50.000 0.00 0.00 42.84 5.14
1359 1918 0.543277 TGATCCCTCGAGCAATGCTT 59.457 50.000 9.91 0.00 39.88 3.91
1360 1919 0.543277 TTGATCCCTCGAGCAATGCT 59.457 50.000 7.79 7.79 39.42 3.79
1368 1927 1.112113 GCAGGTAGTTGATCCCTCGA 58.888 55.000 0.00 0.00 0.00 4.04
1440 1999 6.629128 TGAAACAAAATTGCTGTCAAGAAGA 58.371 32.000 0.00 0.00 35.37 2.87
1468 2027 2.433604 TGGCAAGTCCAAAATCAGCAAA 59.566 40.909 0.00 0.00 43.21 3.68
1494 2053 4.712337 ACAAAACTGTTGTTCCATGGGTAA 59.288 37.500 13.02 1.90 34.96 2.85
1501 2060 1.895798 TGGCACAAAACTGTTGTTCCA 59.104 42.857 6.50 6.50 41.98 3.53
1573 2132 1.322442 GATATGGCACCAAAGCTCCC 58.678 55.000 0.00 0.00 34.17 4.30
1602 2161 2.004583 TCCCGAAGCTGTAAACATCG 57.995 50.000 0.00 0.00 0.00 3.84
1708 2267 3.503748 GCTGGAGCAGTTAGTTTGTCATT 59.496 43.478 0.00 0.00 41.59 2.57
1727 2286 0.037882 AGATATCGCATCCACCGCTG 60.038 55.000 0.00 0.00 0.00 5.18
1730 2289 0.603065 TGGAGATATCGCATCCACCG 59.397 55.000 8.79 0.00 38.19 4.94
1767 2326 0.694771 TGCACAGCTTCCTCTCCAAT 59.305 50.000 0.00 0.00 0.00 3.16
1818 2377 0.324614 TCATCGTTGGCCTGTCATGT 59.675 50.000 3.32 0.00 0.00 3.21
1830 2389 2.292016 CTCTATGACCTCGCTCATCGTT 59.708 50.000 0.00 0.00 39.67 3.85
1855 2414 1.133199 ACCATCAAAGCCACCTTCCAA 60.133 47.619 0.00 0.00 0.00 3.53
1869 2428 1.820519 GAAGGCATCTGCAAACCATCA 59.179 47.619 4.33 0.00 44.36 3.07
1921 2480 0.468648 GGGTAAGAATCCGGGACAGG 59.531 60.000 0.00 0.00 0.00 4.00
1959 2518 1.777272 TCATCCTCCTCCGAGATCTCA 59.223 52.381 22.31 3.05 38.52 3.27
1981 2540 3.745458 CACACACACACACACATATGCTA 59.255 43.478 1.58 0.00 0.00 3.49
1982 2541 2.549329 CACACACACACACACATATGCT 59.451 45.455 1.58 0.00 0.00 3.79
1983 2542 2.290367 ACACACACACACACACATATGC 59.710 45.455 1.58 0.00 0.00 3.14
1984 2543 3.559242 TCACACACACACACACACATATG 59.441 43.478 0.00 0.00 0.00 1.78
1985 2544 3.802866 TCACACACACACACACACATAT 58.197 40.909 0.00 0.00 0.00 1.78
1986 2545 3.252974 TCACACACACACACACACATA 57.747 42.857 0.00 0.00 0.00 2.29
1987 2546 2.106477 TCACACACACACACACACAT 57.894 45.000 0.00 0.00 0.00 3.21
1988 2547 2.106477 ATCACACACACACACACACA 57.894 45.000 0.00 0.00 0.00 3.72
1989 2548 3.485947 AAATCACACACACACACACAC 57.514 42.857 0.00 0.00 0.00 3.82
1991 2550 5.577835 ACATTAAATCACACACACACACAC 58.422 37.500 0.00 0.00 0.00 3.82
1993 2552 6.060028 AGACATTAAATCACACACACACAC 57.940 37.500 0.00 0.00 0.00 3.82
1994 2553 5.819901 TGAGACATTAAATCACACACACACA 59.180 36.000 0.00 0.00 0.00 3.72
1995 2554 6.299023 TGAGACATTAAATCACACACACAC 57.701 37.500 0.00 0.00 0.00 3.82
1996 2555 6.542005 ACTTGAGACATTAAATCACACACACA 59.458 34.615 0.00 0.00 0.00 3.72
1997 2556 6.959361 ACTTGAGACATTAAATCACACACAC 58.041 36.000 0.00 0.00 0.00 3.82
1999 2558 7.426929 AGACTTGAGACATTAAATCACACAC 57.573 36.000 0.00 0.00 0.00 3.82
2000 2559 9.725019 ATAAGACTTGAGACATTAAATCACACA 57.275 29.630 0.00 0.00 0.00 3.72
2001 2560 9.979270 CATAAGACTTGAGACATTAAATCACAC 57.021 33.333 0.00 0.00 0.00 3.82
2002 2561 9.942850 TCATAAGACTTGAGACATTAAATCACA 57.057 29.630 0.00 0.00 0.00 3.58
2052 4013 7.581213 TTCCACATAAAACTTCACATGACTT 57.419 32.000 0.00 0.00 0.00 3.01
2089 4050 7.044798 AGATCAACATCCTCTAACTGCTAAAC 58.955 38.462 0.00 0.00 0.00 2.01
2145 4106 6.137794 ACTCGAATAGTATGTGTCTTCCAG 57.862 41.667 0.00 0.00 36.36 3.86
2213 5762 9.016438 GTTTAATACATTCCTTCAACCCTGTAA 57.984 33.333 0.00 0.00 0.00 2.41
2227 5776 7.174253 TGTGTCCACCTCAAGTTTAATACATTC 59.826 37.037 0.00 0.00 0.00 2.67
2234 5783 3.942748 GTGTGTGTCCACCTCAAGTTTAA 59.057 43.478 0.00 0.00 41.09 1.52
2242 5791 2.639065 TCTTTTGTGTGTGTCCACCTC 58.361 47.619 0.00 0.00 41.09 3.85
2277 5826 5.220303 GCTGAAGAAAACATAGTACTCTGCG 60.220 44.000 8.10 0.00 0.00 5.18
2288 5837 2.719426 GCAGCAGCTGAAGAAAACAT 57.281 45.000 27.39 0.00 37.91 2.71
2312 5861 2.359900 CAGGCTGGGTCTGTTCATAAC 58.640 52.381 6.61 0.00 29.72 1.89
2313 5862 2.787473 CAGGCTGGGTCTGTTCATAA 57.213 50.000 6.61 0.00 29.72 1.90
2320 5869 0.904865 TACAGGACAGGCTGGGTCTG 60.905 60.000 20.34 22.01 41.54 3.51
2321 5870 0.043334 ATACAGGACAGGCTGGGTCT 59.957 55.000 20.34 9.89 35.61 3.85
2324 5873 0.911769 TTCATACAGGACAGGCTGGG 59.088 55.000 20.34 7.77 0.00 4.45
2325 5874 1.556911 ACTTCATACAGGACAGGCTGG 59.443 52.381 20.34 2.96 0.00 4.85
2326 5875 3.735208 CGTACTTCATACAGGACAGGCTG 60.735 52.174 14.16 14.16 32.79 4.85
2327 5876 2.427453 CGTACTTCATACAGGACAGGCT 59.573 50.000 0.00 0.00 32.79 4.58
2328 5877 2.426024 TCGTACTTCATACAGGACAGGC 59.574 50.000 0.00 0.00 32.79 4.85
2329 5878 4.421948 GTTCGTACTTCATACAGGACAGG 58.578 47.826 0.00 0.00 32.79 4.00
2333 5882 3.705051 AGGGTTCGTACTTCATACAGGA 58.295 45.455 0.00 0.00 32.79 3.86
2334 5883 4.181578 CAAGGGTTCGTACTTCATACAGG 58.818 47.826 0.00 0.00 32.79 4.00
2335 5884 4.625742 CACAAGGGTTCGTACTTCATACAG 59.374 45.833 0.00 0.00 32.79 2.74
2336 5885 4.281435 TCACAAGGGTTCGTACTTCATACA 59.719 41.667 0.00 0.00 32.79 2.29
2337 5886 4.813027 TCACAAGGGTTCGTACTTCATAC 58.187 43.478 0.00 0.00 0.00 2.39
2338 5887 5.670792 ATCACAAGGGTTCGTACTTCATA 57.329 39.130 0.00 0.00 0.00 2.15
2340 5889 4.062293 CAATCACAAGGGTTCGTACTTCA 58.938 43.478 0.00 0.00 0.00 3.02
2341 5890 4.312443 TCAATCACAAGGGTTCGTACTTC 58.688 43.478 0.00 0.00 0.00 3.01
2347 5937 4.764679 TTTCATCAATCACAAGGGTTCG 57.235 40.909 0.00 0.00 0.00 3.95
2360 5950 5.702670 CCACTGAGACTAAGCTTTTCATCAA 59.297 40.000 3.20 0.00 0.00 2.57
2365 5955 4.633565 CCATCCACTGAGACTAAGCTTTTC 59.366 45.833 3.20 1.49 0.00 2.29
2374 5964 3.395054 TCATCTCCATCCACTGAGACT 57.605 47.619 0.00 0.00 40.23 3.24
2376 5966 3.919834 TCATCATCTCCATCCACTGAGA 58.080 45.455 0.00 0.00 41.55 3.27
2384 5974 5.246307 TCTGCAATCATCATCATCTCCATC 58.754 41.667 0.00 0.00 0.00 3.51
2392 5982 4.514066 CGAATTCCTCTGCAATCATCATCA 59.486 41.667 0.00 0.00 0.00 3.07
2393 5983 4.514441 ACGAATTCCTCTGCAATCATCATC 59.486 41.667 0.00 0.00 0.00 2.92
2426 6018 9.282247 GCAAAAATAGATAGAAGTGTGAACATG 57.718 33.333 0.00 0.00 0.00 3.21
2427 6019 9.236006 AGCAAAAATAGATAGAAGTGTGAACAT 57.764 29.630 0.00 0.00 0.00 2.71
2444 6036 8.404107 ACAAGAACTTAGCCTTAGCAAAAATA 57.596 30.769 0.00 0.00 43.56 1.40
2445 6037 7.290110 ACAAGAACTTAGCCTTAGCAAAAAT 57.710 32.000 0.00 0.00 43.56 1.82
2487 6079 5.463286 TGTGACACTATGGTTGTAGTTACG 58.537 41.667 7.20 0.00 32.74 3.18
2491 6083 6.382859 TCCATATGTGACACTATGGTTGTAGT 59.617 38.462 26.38 0.00 43.24 2.73
2494 6086 5.428253 GTCCATATGTGACACTATGGTTGT 58.572 41.667 26.38 0.00 43.24 3.32
2497 6089 4.037222 TGGTCCATATGTGACACTATGGT 58.963 43.478 26.38 7.92 43.24 3.55
2498 6090 4.687901 TGGTCCATATGTGACACTATGG 57.312 45.455 24.12 24.12 43.83 2.74
2500 6092 6.313519 ACTTTGGTCCATATGTGACACTAT 57.686 37.500 19.53 1.82 34.36 2.12
2508 6100 4.534500 TGTCCACTACTTTGGTCCATATGT 59.466 41.667 1.24 0.00 37.93 2.29
2573 6272 3.057806 TGCATGTGACAGCAAGAAATCAG 60.058 43.478 7.14 0.00 37.90 2.90
2576 6275 4.491676 GAATGCATGTGACAGCAAGAAAT 58.508 39.130 12.31 0.00 44.88 2.17
2592 6292 9.902684 AAATTACCATCATTAAATTGGAATGCA 57.097 25.926 8.27 0.00 34.82 3.96
2600 6300 8.259411 TGCTGCTGAAATTACCATCATTAAATT 58.741 29.630 0.00 0.00 0.00 1.82
2608 6308 6.624352 TTCTATGCTGCTGAAATTACCATC 57.376 37.500 0.00 0.00 0.00 3.51
2609 6309 7.093814 TGTTTTCTATGCTGCTGAAATTACCAT 60.094 33.333 13.40 0.00 31.08 3.55
2610 6310 6.208402 TGTTTTCTATGCTGCTGAAATTACCA 59.792 34.615 13.40 8.09 31.08 3.25
2625 6326 9.695526 TTTGAGGTCATTTGAATGTTTTCTATG 57.304 29.630 3.85 0.00 37.65 2.23
2629 6330 8.424274 AACTTTGAGGTCATTTGAATGTTTTC 57.576 30.769 3.85 1.92 37.65 2.29
2633 6334 6.713762 TGAACTTTGAGGTCATTTGAATGT 57.286 33.333 3.85 0.00 36.94 2.71
2643 6344 3.879892 AGTTTCTGCTGAACTTTGAGGTC 59.120 43.478 5.41 0.00 31.00 3.85
2646 6347 4.889832 ACAGTTTCTGCTGAACTTTGAG 57.110 40.909 5.41 0.00 39.62 3.02
2666 6371 2.558359 AGGTTGCATTCTTGGCTTGTAC 59.442 45.455 0.00 0.00 0.00 2.90
2697 6402 1.346395 ACTCGTAATGGCAGGAACACA 59.654 47.619 0.00 0.00 0.00 3.72
2699 6404 1.346395 ACACTCGTAATGGCAGGAACA 59.654 47.619 0.00 0.00 0.00 3.18
2719 6424 0.945099 CGGCAGCGAGTCTACTATCA 59.055 55.000 0.00 0.00 0.00 2.15
2720 6425 0.945813 ACGGCAGCGAGTCTACTATC 59.054 55.000 0.00 0.00 0.00 2.08
2721 6426 0.945813 GACGGCAGCGAGTCTACTAT 59.054 55.000 11.21 0.00 34.74 2.12
2724 6429 2.102553 GGACGGCAGCGAGTCTAC 59.897 66.667 16.23 1.36 37.52 2.59
2726 6431 3.753434 CTGGACGGCAGCGAGTCT 61.753 66.667 16.23 0.00 37.52 3.24
2727 6432 3.973267 GACTGGACGGCAGCGAGTC 62.973 68.421 10.28 10.28 34.73 3.36
2729 6434 4.803426 GGACTGGACGGCAGCGAG 62.803 72.222 0.00 0.00 0.00 5.03
2737 6442 3.934391 GAAGGTGCGGGACTGGACG 62.934 68.421 0.00 0.00 0.00 4.79
2739 6444 2.525629 TGAAGGTGCGGGACTGGA 60.526 61.111 0.00 0.00 0.00 3.86
2740 6445 2.046892 CTGAAGGTGCGGGACTGG 60.047 66.667 0.00 0.00 0.00 4.00
2741 6446 2.743928 GCTGAAGGTGCGGGACTG 60.744 66.667 0.00 0.00 0.00 3.51
2742 6447 2.129555 ATTGCTGAAGGTGCGGGACT 62.130 55.000 0.00 0.00 0.00 3.85
2743 6448 0.392461 TATTGCTGAAGGTGCGGGAC 60.392 55.000 0.00 0.00 0.00 4.46
2744 6449 0.326595 TTATTGCTGAAGGTGCGGGA 59.673 50.000 0.00 0.00 0.00 5.14
2745 6450 1.135402 GTTTATTGCTGAAGGTGCGGG 60.135 52.381 0.00 0.00 0.00 6.13
2746 6451 1.539388 TGTTTATTGCTGAAGGTGCGG 59.461 47.619 0.00 0.00 0.00 5.69
2747 6452 2.855180 CTGTTTATTGCTGAAGGTGCG 58.145 47.619 0.00 0.00 0.00 5.34
2748 6453 2.599659 GCTGTTTATTGCTGAAGGTGC 58.400 47.619 0.00 0.00 0.00 5.01
2749 6454 2.414559 CGGCTGTTTATTGCTGAAGGTG 60.415 50.000 0.00 0.00 37.75 4.00
2750 6455 1.812571 CGGCTGTTTATTGCTGAAGGT 59.187 47.619 0.00 0.00 37.75 3.50
2751 6456 1.468054 GCGGCTGTTTATTGCTGAAGG 60.468 52.381 0.00 0.00 37.75 3.46
2752 6457 1.470098 AGCGGCTGTTTATTGCTGAAG 59.530 47.619 0.00 0.00 37.75 3.02
2753 6458 1.533625 AGCGGCTGTTTATTGCTGAA 58.466 45.000 0.00 0.00 37.75 3.02
2754 6459 3.248043 AGCGGCTGTTTATTGCTGA 57.752 47.368 0.00 0.00 37.75 4.26
2755 6460 3.317608 CAGCGGCTGTTTATTGCTG 57.682 52.632 21.60 0.00 45.88 4.41
2756 6461 1.508088 GCAGCGGCTGTTTATTGCT 59.492 52.632 28.88 0.00 36.96 3.91
2757 6462 1.869132 CGCAGCGGCTGTTTATTGC 60.869 57.895 28.88 14.14 38.10 3.56
2758 6463 0.247814 CTCGCAGCGGCTGTTTATTG 60.248 55.000 28.88 13.28 38.10 1.90
2759 6464 1.369091 CCTCGCAGCGGCTGTTTATT 61.369 55.000 28.88 0.00 38.10 1.40
2760 6465 1.815421 CCTCGCAGCGGCTGTTTAT 60.815 57.895 28.88 0.00 38.10 1.40
2764 6469 4.827087 CATCCTCGCAGCGGCTGT 62.827 66.667 28.88 7.27 38.10 4.40
2780 6485 3.319031 TCATATGAGCCAGAGGACTCA 57.681 47.619 0.00 10.89 46.34 3.41
2806 6514 4.673580 GCTGCTGATGTCCAGTTATTTGTG 60.674 45.833 0.00 0.00 44.71 3.33
2808 6516 3.441222 TGCTGCTGATGTCCAGTTATTTG 59.559 43.478 0.00 0.00 44.71 2.32
2822 6530 1.301716 GGAACGAGGTTGCTGCTGA 60.302 57.895 0.00 0.00 31.28 4.26
2846 6554 1.528129 CTTGCCCTGAGAACAAGGTC 58.472 55.000 6.55 0.00 37.68 3.85
2851 6559 0.401738 CTTCCCTTGCCCTGAGAACA 59.598 55.000 0.00 0.00 0.00 3.18
2853 6561 0.693049 GACTTCCCTTGCCCTGAGAA 59.307 55.000 0.00 0.00 0.00 2.87
2867 6575 2.996621 CGGATGTCAAAGACTGGACTTC 59.003 50.000 11.82 11.82 37.43 3.01
2882 6590 9.921637 AAATTATTGTTGTACAAATTCGGATGT 57.078 25.926 10.51 0.00 41.96 3.06
2922 6630 5.462530 TCTCGGTCTACAAGTCATTTGAA 57.537 39.130 0.00 0.00 39.21 2.69
2928 6636 4.659111 TTTGTTCTCGGTCTACAAGTCA 57.341 40.909 0.00 0.00 33.74 3.41
2954 6663 7.895975 ACACAGATTATATCGGAATGATGTG 57.104 36.000 0.00 0.00 37.99 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.