Multiple sequence alignment - TraesCS3B01G052400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G052400 chr3B 100.000 3279 0 0 1 3279 26589510 26586232 0.000000e+00 6056
1 TraesCS3B01G052400 chr3B 85.346 1242 117 34 48 1242 15052789 15054012 0.000000e+00 1225
2 TraesCS3B01G052400 chr3B 90.531 433 38 2 1261 1690 15054079 15054511 1.320000e-158 569
3 TraesCS3B01G052400 chr3B 74.790 714 159 17 1337 2043 14402212 14401513 5.320000e-78 302
4 TraesCS3B01G052400 chr3A 90.682 2758 170 36 51 2755 17623747 17621024 0.000000e+00 3589
5 TraesCS3B01G052400 chr3A 80.653 796 144 9 1250 2041 16458027 16457238 2.800000e-170 608
6 TraesCS3B01G052400 chr3A 87.975 158 16 2 3124 3278 17620967 17620810 2.010000e-42 183
7 TraesCS3B01G052400 chr3D 92.847 2041 121 13 732 2755 10642932 10644964 0.000000e+00 2937
8 TraesCS3B01G052400 chr3D 91.757 740 47 9 951 1689 10376678 10375952 0.000000e+00 1016
9 TraesCS3B01G052400 chr3D 96.899 387 12 0 1681 2067 10366125 10365739 0.000000e+00 649
10 TraesCS3B01G052400 chr3D 83.220 733 82 23 254 960 10377858 10377141 4.620000e-178 634
11 TraesCS3B01G052400 chr3D 78.797 316 22 12 341 634 10642555 10642847 1.560000e-38 171
12 TraesCS3B01G052400 chrUn 80.653 796 144 9 1250 2041 358413536 358412747 2.800000e-170 608
13 TraesCS3B01G052400 chrUn 81.587 668 85 14 1354 2011 43295771 43295132 4.850000e-143 518
14 TraesCS3B01G052400 chrUn 77.493 702 135 19 1354 2045 333045783 333046471 1.830000e-107 399
15 TraesCS3B01G052400 chrUn 81.208 298 36 13 949 1240 43296195 43295912 4.260000e-54 222
16 TraesCS3B01G052400 chr1A 95.349 172 7 1 2752 2922 11628165 11628336 4.170000e-69 272
17 TraesCS3B01G052400 chr4B 95.294 170 6 2 2759 2927 429242084 429241916 5.390000e-68 268
18 TraesCS3B01G052400 chr7D 95.181 166 7 1 2759 2923 5492045 5492210 9.020000e-66 261
19 TraesCS3B01G052400 chr2D 95.181 166 7 1 2759 2923 47658289 47658454 9.020000e-66 261
20 TraesCS3B01G052400 chr5D 93.714 175 8 3 2759 2930 513980490 513980316 3.250000e-65 259
21 TraesCS3B01G052400 chr5D 90.000 190 13 5 2759 2944 5112350 5112163 1.180000e-59 241
22 TraesCS3B01G052400 chr4A 94.578 166 8 1 2759 2923 665604286 665604121 4.200000e-64 255
23 TraesCS3B01G052400 chr4D 94.048 168 9 1 2759 2925 274467681 274467514 1.510000e-63 254
24 TraesCS3B01G052400 chr1D 94.012 167 9 1 2759 2924 293904601 293904767 5.430000e-63 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G052400 chr3B 26586232 26589510 3278 True 6056 6056 100.0000 1 3279 1 chr3B.!!$R2 3278
1 TraesCS3B01G052400 chr3B 15052789 15054511 1722 False 897 1225 87.9385 48 1690 2 chr3B.!!$F1 1642
2 TraesCS3B01G052400 chr3B 14401513 14402212 699 True 302 302 74.7900 1337 2043 1 chr3B.!!$R1 706
3 TraesCS3B01G052400 chr3A 17620810 17623747 2937 True 1886 3589 89.3285 51 3278 2 chr3A.!!$R2 3227
4 TraesCS3B01G052400 chr3A 16457238 16458027 789 True 608 608 80.6530 1250 2041 1 chr3A.!!$R1 791
5 TraesCS3B01G052400 chr3D 10642555 10644964 2409 False 1554 2937 85.8220 341 2755 2 chr3D.!!$F1 2414
6 TraesCS3B01G052400 chr3D 10375952 10377858 1906 True 825 1016 87.4885 254 1689 2 chr3D.!!$R2 1435
7 TraesCS3B01G052400 chrUn 358412747 358413536 789 True 608 608 80.6530 1250 2041 1 chrUn.!!$R1 791
8 TraesCS3B01G052400 chrUn 333045783 333046471 688 False 399 399 77.4930 1354 2045 1 chrUn.!!$F1 691
9 TraesCS3B01G052400 chrUn 43295132 43296195 1063 True 370 518 81.3975 949 2011 2 chrUn.!!$R2 1062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 255 0.109342 CACTGGTGAAACAGCCTCCT 59.891 55.0 0.0 0.0 42.21 3.69 F
249 256 0.846693 ACTGGTGAAACAGCCTCCTT 59.153 50.0 0.0 0.0 42.21 3.36 F
2113 2777 0.890683 CTCCATTGACCCTGTTTGCC 59.109 55.0 0.0 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2170 2834 0.799393 GCTTTTGAGAGGAAGTCGGC 59.201 55.000 0.00 0.0 0.00 5.54 R
2224 2888 1.134401 TCGAATCTTGAGGGCACATCC 60.134 52.381 0.00 0.0 0.00 3.51 R
3031 3707 1.787058 TGCCTAGCTGTCCCTATAGGA 59.213 52.381 21.07 3.6 44.91 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.779475 CGGAAGTGTGTTCTGGCT 57.221 55.556 0.00 0.00 0.00 4.75
18 19 2.238353 CGGAAGTGTGTTCTGGCTG 58.762 57.895 0.00 0.00 0.00 4.85
19 20 0.249868 CGGAAGTGTGTTCTGGCTGA 60.250 55.000 0.00 0.00 0.00 4.26
20 21 1.517242 GGAAGTGTGTTCTGGCTGAG 58.483 55.000 0.00 0.00 0.00 3.35
21 22 1.517242 GAAGTGTGTTCTGGCTGAGG 58.483 55.000 0.00 0.00 0.00 3.86
22 23 0.839946 AAGTGTGTTCTGGCTGAGGT 59.160 50.000 0.00 0.00 0.00 3.85
23 24 0.839946 AGTGTGTTCTGGCTGAGGTT 59.160 50.000 0.00 0.00 0.00 3.50
24 25 0.947244 GTGTGTTCTGGCTGAGGTTG 59.053 55.000 0.00 0.00 0.00 3.77
25 26 0.546122 TGTGTTCTGGCTGAGGTTGT 59.454 50.000 0.00 0.00 0.00 3.32
26 27 1.064758 TGTGTTCTGGCTGAGGTTGTT 60.065 47.619 0.00 0.00 0.00 2.83
27 28 2.171659 TGTGTTCTGGCTGAGGTTGTTA 59.828 45.455 0.00 0.00 0.00 2.41
28 29 2.808543 GTGTTCTGGCTGAGGTTGTTAG 59.191 50.000 0.00 0.00 0.00 2.34
29 30 1.807142 GTTCTGGCTGAGGTTGTTAGC 59.193 52.381 0.00 0.00 36.74 3.09
30 31 1.352083 TCTGGCTGAGGTTGTTAGCT 58.648 50.000 0.00 0.00 37.58 3.32
31 32 1.699634 TCTGGCTGAGGTTGTTAGCTT 59.300 47.619 0.00 0.00 37.58 3.74
32 33 1.808945 CTGGCTGAGGTTGTTAGCTTG 59.191 52.381 0.00 0.00 37.58 4.01
33 34 1.419762 TGGCTGAGGTTGTTAGCTTGA 59.580 47.619 0.00 0.00 37.58 3.02
34 35 2.158682 TGGCTGAGGTTGTTAGCTTGAA 60.159 45.455 0.00 0.00 37.58 2.69
35 36 2.884639 GGCTGAGGTTGTTAGCTTGAAA 59.115 45.455 0.00 0.00 37.58 2.69
36 37 3.317993 GGCTGAGGTTGTTAGCTTGAAAA 59.682 43.478 0.00 0.00 37.58 2.29
55 56 6.580788 TGAAAAGATGAAAGGTTGCATTGAA 58.419 32.000 0.00 0.00 0.00 2.69
135 141 4.472286 GTTGCAACGTGCTAACATTACAT 58.528 39.130 14.90 0.00 45.31 2.29
137 143 6.255215 GTTGCAACGTGCTAACATTACATAT 58.745 36.000 14.90 0.00 45.31 1.78
139 145 5.352846 TGCAACGTGCTAACATTACATATGT 59.647 36.000 13.93 13.93 45.31 2.29
140 146 6.535508 TGCAACGTGCTAACATTACATATGTA 59.464 34.615 11.62 11.62 45.31 2.29
195 202 1.774894 TACCGGGCCCATATCAAGCC 61.775 60.000 24.92 0.00 46.37 4.35
213 220 0.829182 CCCAGCCCAGCCCATTATTC 60.829 60.000 0.00 0.00 0.00 1.75
215 222 1.325355 CAGCCCAGCCCATTATTCAG 58.675 55.000 0.00 0.00 0.00 3.02
216 223 0.468771 AGCCCAGCCCATTATTCAGC 60.469 55.000 0.00 0.00 0.00 4.26
218 225 1.656441 CCAGCCCATTATTCAGCGC 59.344 57.895 0.00 0.00 0.00 5.92
219 226 1.656441 CAGCCCATTATTCAGCGCC 59.344 57.895 2.29 0.00 0.00 6.53
220 227 1.893808 AGCCCATTATTCAGCGCCG 60.894 57.895 2.29 0.00 0.00 6.46
221 228 1.891919 GCCCATTATTCAGCGCCGA 60.892 57.895 2.29 0.00 0.00 5.54
222 229 1.845809 GCCCATTATTCAGCGCCGAG 61.846 60.000 2.29 0.00 0.00 4.63
233 240 3.114616 CGCCGAGCTTGACCACTG 61.115 66.667 1.22 0.00 0.00 3.66
234 241 2.743928 GCCGAGCTTGACCACTGG 60.744 66.667 1.22 0.00 0.00 4.00
235 242 2.743718 CCGAGCTTGACCACTGGT 59.256 61.111 0.00 0.00 39.44 4.00
236 243 1.669115 CCGAGCTTGACCACTGGTG 60.669 63.158 5.10 0.00 35.25 4.17
237 244 1.367471 CGAGCTTGACCACTGGTGA 59.633 57.895 5.10 0.00 35.25 4.02
248 255 0.109342 CACTGGTGAAACAGCCTCCT 59.891 55.000 0.00 0.00 42.21 3.69
249 256 0.846693 ACTGGTGAAACAGCCTCCTT 59.153 50.000 0.00 0.00 42.21 3.36
250 257 1.202818 ACTGGTGAAACAGCCTCCTTC 60.203 52.381 0.00 0.00 42.21 3.46
289 311 3.584848 TCTCAGAGAAAGAGGGGGAAAAG 59.415 47.826 0.00 0.00 33.92 2.27
293 315 5.103686 TCAGAGAAAGAGGGGGAAAAGAAAA 60.104 40.000 0.00 0.00 0.00 2.29
337 364 4.824515 CTCCCTCCTCCGCTCCGT 62.825 72.222 0.00 0.00 0.00 4.69
551 600 1.005394 GGAACTTTCCTCCGTCGCA 60.005 57.895 0.34 0.00 44.11 5.10
616 668 8.237949 GGAATAAAGACCTTCTTTTTACTGCTC 58.762 37.037 6.49 0.00 43.62 4.26
627 679 3.944055 TTTACTGCTCCTCTGTCAGAC 57.056 47.619 0.00 0.00 0.00 3.51
633 685 2.307392 TGCTCCTCTGTCAGACTACTCT 59.693 50.000 0.00 0.00 0.00 3.24
637 689 5.686387 GCTCCTCTGTCAGACTACTCTCATA 60.686 48.000 0.00 0.00 0.00 2.15
638 690 5.676552 TCCTCTGTCAGACTACTCTCATAC 58.323 45.833 0.00 0.00 0.00 2.39
652 704 4.645136 ACTCTCATACGCATCCTTAGTTCA 59.355 41.667 0.00 0.00 0.00 3.18
656 708 5.912892 TCATACGCATCCTTAGTTCATCAA 58.087 37.500 0.00 0.00 0.00 2.57
676 728 9.453572 TCATCAATGCTCTTATTATTATCCCAC 57.546 33.333 0.00 0.00 0.00 4.61
697 749 3.944015 ACTAATCTGGCAAATCAGCTCAC 59.056 43.478 0.00 0.00 34.91 3.51
722 774 4.884668 TTACTGTCCCGAAACAAGAGAT 57.115 40.909 0.00 0.00 0.00 2.75
723 775 3.045601 ACTGTCCCGAAACAAGAGATG 57.954 47.619 0.00 0.00 0.00 2.90
725 777 2.996621 CTGTCCCGAAACAAGAGATGTC 59.003 50.000 0.00 0.00 42.99 3.06
726 778 2.289444 TGTCCCGAAACAAGAGATGTCC 60.289 50.000 0.00 0.00 42.99 4.02
727 779 1.067142 TCCCGAAACAAGAGATGTCCG 60.067 52.381 0.00 0.00 42.99 4.79
728 780 1.359848 CCGAAACAAGAGATGTCCGG 58.640 55.000 0.00 0.00 45.33 5.14
729 781 2.363788 CGAAACAAGAGATGTCCGGA 57.636 50.000 0.00 0.00 42.99 5.14
733 804 3.485463 AACAAGAGATGTCCGGAAACA 57.515 42.857 5.23 0.72 42.99 2.83
871 956 3.191371 GTGTCACTTCCAAATCCATGACC 59.809 47.826 0.00 0.00 36.47 4.02
916 1001 1.375326 GGAACAGGCCGGAGAAAGT 59.625 57.895 10.86 0.00 0.00 2.66
935 1033 1.053424 TAGCGGTGGTCTTGGTTTCT 58.947 50.000 0.00 0.00 0.00 2.52
937 1035 1.949257 CGGTGGTCTTGGTTTCTGC 59.051 57.895 0.00 0.00 0.00 4.26
945 1043 2.808543 GTCTTGGTTTCTGCCTGTAGTG 59.191 50.000 0.00 0.00 0.00 2.74
1023 1597 1.008538 CGGCAGCAACTCCAACAAC 60.009 57.895 0.00 0.00 0.00 3.32
1253 1895 9.089601 TGACGAATTATCATTGTACGTAACATT 57.910 29.630 0.00 0.00 38.10 2.71
1299 1945 4.202419 TGGAATGTGTAGCACTAACCTGTT 60.202 41.667 0.90 0.00 35.11 3.16
1307 1953 5.526111 TGTAGCACTAACCTGTTTTCTTGTC 59.474 40.000 0.00 0.00 0.00 3.18
1310 1958 4.785341 GCACTAACCTGTTTTCTTGTCGTG 60.785 45.833 0.00 0.00 0.00 4.35
1346 1997 8.817092 TGTTTCCCCCTTCTTATTTATGTTAG 57.183 34.615 0.00 0.00 0.00 2.34
2059 2723 4.077300 TCATCAAGCTTCAAGTGTCAGT 57.923 40.909 0.00 0.00 0.00 3.41
2111 2775 1.888512 CCACTCCATTGACCCTGTTTG 59.111 52.381 0.00 0.00 0.00 2.93
2113 2777 0.890683 CTCCATTGACCCTGTTTGCC 59.109 55.000 0.00 0.00 0.00 4.52
2170 2834 4.166919 AGATCCTGTATTGAAGGAAAGGGG 59.833 45.833 0.00 0.00 46.76 4.79
2224 2888 7.328982 CCTGATTATTCTTCTGATGACGATGAG 59.671 40.741 0.00 0.00 0.00 2.90
2251 2915 0.737367 CCTCAAGATTCGAGCGTGCA 60.737 55.000 0.00 0.00 0.00 4.57
2320 2984 1.874019 CAAGGTCCGATCGTGCTCG 60.874 63.158 15.09 0.81 38.37 5.03
2333 2997 1.598183 CGTGCTCGTGTATGCTAGAGG 60.598 57.143 0.00 0.00 0.00 3.69
2354 3018 0.178301 TTAGCGTTGGTGTGTGGACA 59.822 50.000 0.00 0.00 0.00 4.02
2408 3075 7.872061 TTCTGGTTCCAGGATATATGTATGT 57.128 36.000 17.37 0.00 35.01 2.29
2411 3078 5.186992 TGGTTCCAGGATATATGTATGTCGG 59.813 44.000 0.00 0.00 0.00 4.79
2452 3119 0.875059 CGGAGCTGTTTTGACCTTCC 59.125 55.000 0.00 0.00 0.00 3.46
2469 3136 5.901552 ACCTTCCTTATGTGTTTTGTTGTG 58.098 37.500 0.00 0.00 0.00 3.33
2476 3143 1.269723 TGTGTTTTGTTGTGCGGAACA 59.730 42.857 0.00 0.00 36.85 3.18
2500 3167 1.079197 CGTGGCATGTGAGGCTGTA 60.079 57.895 0.00 0.00 34.73 2.74
2501 3168 0.673333 CGTGGCATGTGAGGCTGTAA 60.673 55.000 0.00 0.00 34.73 2.41
2589 3256 7.587757 GCAGTTATCCTGTTTTATAATCTTGCG 59.412 37.037 0.00 0.00 43.55 4.85
2591 3258 7.499232 AGTTATCCTGTTTTATAATCTTGCGCT 59.501 33.333 9.73 0.00 0.00 5.92
2661 3337 3.119743 CCCAATGTTGCATATATCGGCAG 60.120 47.826 0.00 0.00 41.68 4.85
2664 3340 5.390885 CCAATGTTGCATATATCGGCAGTAC 60.391 44.000 0.00 0.00 41.68 2.73
2665 3341 4.600692 TGTTGCATATATCGGCAGTACT 57.399 40.909 0.00 0.00 41.68 2.73
2668 3344 4.864704 TGCATATATCGGCAGTACTGAA 57.135 40.909 27.08 11.00 37.17 3.02
2683 3359 7.334421 GGCAGTACTGAAGAAATGAATTGTCTA 59.666 37.037 27.08 0.00 0.00 2.59
2684 3360 8.721478 GCAGTACTGAAGAAATGAATTGTCTAA 58.279 33.333 27.08 0.00 0.00 2.10
2755 3431 5.244178 GCTAGACATAGTGGTAATACTGCCT 59.756 44.000 0.00 0.00 32.19 4.75
2757 3433 4.058817 GACATAGTGGTAATACTGCCTGC 58.941 47.826 0.00 0.00 32.19 4.85
2758 3434 3.711704 ACATAGTGGTAATACTGCCTGCT 59.288 43.478 0.00 0.00 32.19 4.24
2761 3437 3.375699 AGTGGTAATACTGCCTGCTACT 58.624 45.455 0.00 0.00 0.00 2.57
2762 3438 3.385111 AGTGGTAATACTGCCTGCTACTC 59.615 47.826 0.00 0.00 0.00 2.59
2763 3439 2.698797 TGGTAATACTGCCTGCTACTCC 59.301 50.000 0.00 0.00 0.00 3.85
2764 3440 2.037381 GGTAATACTGCCTGCTACTCCC 59.963 54.545 0.00 0.00 0.00 4.30
2765 3441 2.182516 AATACTGCCTGCTACTCCCT 57.817 50.000 0.00 0.00 0.00 4.20
2766 3442 1.710816 ATACTGCCTGCTACTCCCTC 58.289 55.000 0.00 0.00 0.00 4.30
2767 3443 0.631753 TACTGCCTGCTACTCCCTCT 59.368 55.000 0.00 0.00 0.00 3.69
2768 3444 0.975040 ACTGCCTGCTACTCCCTCTG 60.975 60.000 0.00 0.00 0.00 3.35
2769 3445 0.975040 CTGCCTGCTACTCCCTCTGT 60.975 60.000 0.00 0.00 0.00 3.41
2771 3447 0.176910 GCCTGCTACTCCCTCTGTTC 59.823 60.000 0.00 0.00 0.00 3.18
2773 3449 0.827368 CTGCTACTCCCTCTGTTCCC 59.173 60.000 0.00 0.00 0.00 3.97
2774 3450 0.116342 TGCTACTCCCTCTGTTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
2775 3451 1.276622 GCTACTCCCTCTGTTCCCAA 58.723 55.000 0.00 0.00 0.00 4.12
2776 3452 1.628846 GCTACTCCCTCTGTTCCCAAA 59.371 52.381 0.00 0.00 0.00 3.28
2777 3453 2.239907 GCTACTCCCTCTGTTCCCAAAT 59.760 50.000 0.00 0.00 0.00 2.32
2778 3454 3.454812 GCTACTCCCTCTGTTCCCAAATA 59.545 47.826 0.00 0.00 0.00 1.40
2779 3455 4.103311 GCTACTCCCTCTGTTCCCAAATAT 59.897 45.833 0.00 0.00 0.00 1.28
2780 3456 5.307196 GCTACTCCCTCTGTTCCCAAATATA 59.693 44.000 0.00 0.00 0.00 0.86
2781 3457 6.183361 GCTACTCCCTCTGTTCCCAAATATAA 60.183 42.308 0.00 0.00 0.00 0.98
2782 3458 6.253946 ACTCCCTCTGTTCCCAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
2783 3459 5.731678 ACTCCCTCTGTTCCCAAATATAAGT 59.268 40.000 0.00 0.00 0.00 2.24
2784 3460 6.126739 ACTCCCTCTGTTCCCAAATATAAGTC 60.127 42.308 0.00 0.00 0.00 3.01
2785 3461 5.970640 TCCCTCTGTTCCCAAATATAAGTCT 59.029 40.000 0.00 0.00 0.00 3.24
2786 3462 6.447084 TCCCTCTGTTCCCAAATATAAGTCTT 59.553 38.462 0.00 0.00 0.00 3.01
2787 3463 7.036863 TCCCTCTGTTCCCAAATATAAGTCTTT 60.037 37.037 0.00 0.00 0.00 2.52
2788 3464 7.615757 CCCTCTGTTCCCAAATATAAGTCTTTT 59.384 37.037 0.00 0.00 0.00 2.27
2789 3465 9.025041 CCTCTGTTCCCAAATATAAGTCTTTTT 57.975 33.333 0.00 0.00 0.00 1.94
2806 3482 8.171164 AGTCTTTTTAGAGATTTCAACAAGGG 57.829 34.615 0.00 0.00 0.00 3.95
2807 3483 7.998964 AGTCTTTTTAGAGATTTCAACAAGGGA 59.001 33.333 0.00 0.00 0.00 4.20
2808 3484 8.076781 GTCTTTTTAGAGATTTCAACAAGGGAC 58.923 37.037 0.00 0.00 0.00 4.46
2810 3486 9.284968 CTTTTTAGAGATTTCAACAAGGGACTA 57.715 33.333 0.00 0.00 38.49 2.59
2811 3487 8.617290 TTTTAGAGATTTCAACAAGGGACTAC 57.383 34.615 0.00 0.00 38.49 2.73
2812 3488 5.825593 AGAGATTTCAACAAGGGACTACA 57.174 39.130 0.00 0.00 38.49 2.74
2813 3489 6.380079 AGAGATTTCAACAAGGGACTACAT 57.620 37.500 0.00 0.00 38.49 2.29
2814 3490 7.496346 AGAGATTTCAACAAGGGACTACATA 57.504 36.000 0.00 0.00 38.49 2.29
2815 3491 7.331791 AGAGATTTCAACAAGGGACTACATAC 58.668 38.462 0.00 0.00 38.49 2.39
2816 3492 6.106673 AGATTTCAACAAGGGACTACATACG 58.893 40.000 0.00 0.00 38.49 3.06
2817 3493 5.471556 TTTCAACAAGGGACTACATACGA 57.528 39.130 0.00 0.00 38.49 3.43
2818 3494 5.471556 TTCAACAAGGGACTACATACGAA 57.528 39.130 0.00 0.00 38.49 3.85
2819 3495 5.068234 TCAACAAGGGACTACATACGAAG 57.932 43.478 0.00 0.00 38.49 3.79
2820 3496 3.521947 ACAAGGGACTACATACGAAGC 57.478 47.619 0.00 0.00 38.49 3.86
2821 3497 2.829720 ACAAGGGACTACATACGAAGCA 59.170 45.455 0.00 0.00 38.49 3.91
2822 3498 3.259876 ACAAGGGACTACATACGAAGCAA 59.740 43.478 0.00 0.00 38.49 3.91
2823 3499 4.250464 CAAGGGACTACATACGAAGCAAA 58.750 43.478 0.00 0.00 38.49 3.68
2824 3500 4.546829 AGGGACTACATACGAAGCAAAA 57.453 40.909 0.00 0.00 36.02 2.44
2825 3501 4.251268 AGGGACTACATACGAAGCAAAAC 58.749 43.478 0.00 0.00 36.02 2.43
2826 3502 3.061697 GGGACTACATACGAAGCAAAACG 59.938 47.826 0.00 0.00 0.00 3.60
2827 3503 3.922240 GGACTACATACGAAGCAAAACGA 59.078 43.478 0.00 0.00 0.00 3.85
2828 3504 4.031426 GGACTACATACGAAGCAAAACGAG 59.969 45.833 0.00 0.00 0.00 4.18
2829 3505 4.553323 ACTACATACGAAGCAAAACGAGT 58.447 39.130 0.00 0.00 0.00 4.18
2830 3506 3.788434 ACATACGAAGCAAAACGAGTG 57.212 42.857 0.00 0.00 0.00 3.51
2831 3507 3.386486 ACATACGAAGCAAAACGAGTGA 58.614 40.909 0.00 0.00 0.00 3.41
2832 3508 3.805422 ACATACGAAGCAAAACGAGTGAA 59.195 39.130 0.00 0.00 0.00 3.18
2833 3509 4.451096 ACATACGAAGCAAAACGAGTGAAT 59.549 37.500 0.00 0.00 0.00 2.57
2834 3510 3.521524 ACGAAGCAAAACGAGTGAATC 57.478 42.857 0.00 0.00 0.00 2.52
2835 3511 3.131396 ACGAAGCAAAACGAGTGAATCT 58.869 40.909 0.00 0.00 0.00 2.40
2836 3512 4.304110 ACGAAGCAAAACGAGTGAATCTA 58.696 39.130 0.00 0.00 0.00 1.98
2837 3513 4.150098 ACGAAGCAAAACGAGTGAATCTAC 59.850 41.667 0.00 0.00 0.00 2.59
2838 3514 4.149922 CGAAGCAAAACGAGTGAATCTACA 59.850 41.667 0.00 0.00 0.00 2.74
2839 3515 4.992381 AGCAAAACGAGTGAATCTACAC 57.008 40.909 0.00 0.00 40.60 2.90
2875 3551 9.511272 TGTCTATATATGTCCGTATGTTGTAGT 57.489 33.333 0.00 0.00 0.00 2.73
2876 3552 9.985318 GTCTATATATGTCCGTATGTTGTAGTC 57.015 37.037 0.00 0.00 0.00 2.59
2877 3553 9.170734 TCTATATATGTCCGTATGTTGTAGTCC 57.829 37.037 0.00 0.00 0.00 3.85
2878 3554 7.770366 ATATATGTCCGTATGTTGTAGTCCA 57.230 36.000 0.00 0.00 0.00 4.02
2879 3555 6.665992 ATATGTCCGTATGTTGTAGTCCAT 57.334 37.500 0.00 0.00 0.00 3.41
2880 3556 4.811969 TGTCCGTATGTTGTAGTCCATT 57.188 40.909 0.00 0.00 0.00 3.16
2881 3557 5.155278 TGTCCGTATGTTGTAGTCCATTT 57.845 39.130 0.00 0.00 0.00 2.32
2882 3558 4.932799 TGTCCGTATGTTGTAGTCCATTTG 59.067 41.667 0.00 0.00 0.00 2.32
2883 3559 5.172934 GTCCGTATGTTGTAGTCCATTTGA 58.827 41.667 0.00 0.00 0.00 2.69
2884 3560 5.640357 GTCCGTATGTTGTAGTCCATTTGAA 59.360 40.000 0.00 0.00 0.00 2.69
2885 3561 6.148150 GTCCGTATGTTGTAGTCCATTTGAAA 59.852 38.462 0.00 0.00 0.00 2.69
2886 3562 6.148150 TCCGTATGTTGTAGTCCATTTGAAAC 59.852 38.462 0.00 0.00 0.00 2.78
2887 3563 6.311723 CGTATGTTGTAGTCCATTTGAAACC 58.688 40.000 0.00 0.00 0.00 3.27
2888 3564 6.148811 CGTATGTTGTAGTCCATTTGAAACCT 59.851 38.462 0.00 0.00 0.00 3.50
2889 3565 6.575162 ATGTTGTAGTCCATTTGAAACCTC 57.425 37.500 0.00 0.00 0.00 3.85
2890 3566 5.690865 TGTTGTAGTCCATTTGAAACCTCT 58.309 37.500 0.00 0.00 0.00 3.69
2891 3567 6.833041 TGTTGTAGTCCATTTGAAACCTCTA 58.167 36.000 0.00 0.00 0.00 2.43
2892 3568 7.284074 TGTTGTAGTCCATTTGAAACCTCTAA 58.716 34.615 0.00 0.00 0.00 2.10
2893 3569 7.776030 TGTTGTAGTCCATTTGAAACCTCTAAA 59.224 33.333 0.00 0.00 0.00 1.85
2894 3570 8.626526 GTTGTAGTCCATTTGAAACCTCTAAAA 58.373 33.333 0.00 0.00 0.00 1.52
2895 3571 8.754991 TGTAGTCCATTTGAAACCTCTAAAAA 57.245 30.769 0.00 0.00 0.00 1.94
2896 3572 8.846211 TGTAGTCCATTTGAAACCTCTAAAAAG 58.154 33.333 0.00 0.00 0.00 2.27
2897 3573 9.063615 GTAGTCCATTTGAAACCTCTAAAAAGA 57.936 33.333 0.00 0.00 0.00 2.52
2898 3574 7.941919 AGTCCATTTGAAACCTCTAAAAAGAC 58.058 34.615 0.00 0.00 0.00 3.01
2899 3575 7.780271 AGTCCATTTGAAACCTCTAAAAAGACT 59.220 33.333 0.00 0.00 0.00 3.24
2900 3576 8.414003 GTCCATTTGAAACCTCTAAAAAGACTT 58.586 33.333 0.00 0.00 0.00 3.01
2901 3577 9.635404 TCCATTTGAAACCTCTAAAAAGACTTA 57.365 29.630 0.00 0.00 0.00 2.24
2917 3593 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2918 3594 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
2919 3595 7.527568 AGACTTATATTTAGGAACGGAGGAG 57.472 40.000 0.00 0.00 0.00 3.69
2959 3635 2.503331 TGCAACAGGTTACCATGTCTG 58.497 47.619 3.51 7.64 0.00 3.51
2960 3636 1.200020 GCAACAGGTTACCATGTCTGC 59.800 52.381 3.51 12.55 0.00 4.26
2961 3637 2.503331 CAACAGGTTACCATGTCTGCA 58.497 47.619 3.51 0.00 0.00 4.41
2962 3638 2.185004 ACAGGTTACCATGTCTGCAC 57.815 50.000 3.51 0.00 0.00 4.57
2963 3639 1.699634 ACAGGTTACCATGTCTGCACT 59.300 47.619 3.51 0.00 0.00 4.40
2964 3640 2.106511 ACAGGTTACCATGTCTGCACTT 59.893 45.455 3.51 0.00 0.00 3.16
2965 3641 3.149196 CAGGTTACCATGTCTGCACTTT 58.851 45.455 3.51 0.00 0.00 2.66
2966 3642 3.569701 CAGGTTACCATGTCTGCACTTTT 59.430 43.478 3.51 0.00 0.00 2.27
2967 3643 4.759693 CAGGTTACCATGTCTGCACTTTTA 59.240 41.667 3.51 0.00 0.00 1.52
2968 3644 5.240623 CAGGTTACCATGTCTGCACTTTTAA 59.759 40.000 3.51 0.00 0.00 1.52
2969 3645 5.473504 AGGTTACCATGTCTGCACTTTTAAG 59.526 40.000 3.51 0.00 0.00 1.85
2970 3646 5.472137 GGTTACCATGTCTGCACTTTTAAGA 59.528 40.000 0.00 0.00 0.00 2.10
2971 3647 6.016610 GGTTACCATGTCTGCACTTTTAAGAA 60.017 38.462 0.00 0.00 0.00 2.52
2972 3648 5.695851 ACCATGTCTGCACTTTTAAGAAG 57.304 39.130 0.00 0.00 0.00 2.85
2973 3649 5.133221 ACCATGTCTGCACTTTTAAGAAGT 58.867 37.500 0.00 0.00 0.00 3.01
2974 3650 5.594317 ACCATGTCTGCACTTTTAAGAAGTT 59.406 36.000 0.00 0.00 0.00 2.66
2975 3651 5.916883 CCATGTCTGCACTTTTAAGAAGTTG 59.083 40.000 0.00 0.00 0.00 3.16
2976 3652 5.499139 TGTCTGCACTTTTAAGAAGTTGG 57.501 39.130 0.00 0.00 0.00 3.77
2977 3653 4.947388 TGTCTGCACTTTTAAGAAGTTGGT 59.053 37.500 0.00 0.00 0.00 3.67
2978 3654 5.065988 TGTCTGCACTTTTAAGAAGTTGGTC 59.934 40.000 0.00 0.00 0.00 4.02
2979 3655 5.065988 GTCTGCACTTTTAAGAAGTTGGTCA 59.934 40.000 0.00 0.00 0.00 4.02
2980 3656 5.827797 TCTGCACTTTTAAGAAGTTGGTCAT 59.172 36.000 0.00 0.00 0.00 3.06
2981 3657 6.321181 TCTGCACTTTTAAGAAGTTGGTCATT 59.679 34.615 0.00 0.00 0.00 2.57
2982 3658 7.500892 TCTGCACTTTTAAGAAGTTGGTCATTA 59.499 33.333 0.00 0.00 0.00 1.90
2983 3659 7.422399 TGCACTTTTAAGAAGTTGGTCATTAC 58.578 34.615 0.00 0.00 0.00 1.89
2984 3660 7.067615 TGCACTTTTAAGAAGTTGGTCATTACA 59.932 33.333 0.00 0.00 0.00 2.41
2985 3661 8.082242 GCACTTTTAAGAAGTTGGTCATTACAT 58.918 33.333 0.00 0.00 0.00 2.29
2993 3669 8.420374 AGAAGTTGGTCATTACATATGTTACG 57.580 34.615 14.77 0.00 0.00 3.18
2994 3670 7.494625 AGAAGTTGGTCATTACATATGTTACGG 59.505 37.037 14.77 1.46 0.00 4.02
2995 3671 6.646267 AGTTGGTCATTACATATGTTACGGT 58.354 36.000 14.77 0.00 0.00 4.83
2996 3672 7.107542 AGTTGGTCATTACATATGTTACGGTT 58.892 34.615 14.77 0.00 0.00 4.44
2997 3673 7.608761 AGTTGGTCATTACATATGTTACGGTTT 59.391 33.333 14.77 0.00 0.00 3.27
2998 3674 7.310072 TGGTCATTACATATGTTACGGTTTG 57.690 36.000 14.77 0.00 0.00 2.93
2999 3675 7.104290 TGGTCATTACATATGTTACGGTTTGA 58.896 34.615 14.77 2.44 0.00 2.69
3000 3676 7.606839 TGGTCATTACATATGTTACGGTTTGAA 59.393 33.333 14.77 0.00 0.00 2.69
3001 3677 8.120465 GGTCATTACATATGTTACGGTTTGAAG 58.880 37.037 14.77 0.00 0.00 3.02
3002 3678 8.662141 GTCATTACATATGTTACGGTTTGAAGT 58.338 33.333 14.77 0.00 0.00 3.01
3003 3679 9.221933 TCATTACATATGTTACGGTTTGAAGTT 57.778 29.630 14.77 0.00 0.00 2.66
3004 3680 9.834628 CATTACATATGTTACGGTTTGAAGTTT 57.165 29.630 14.77 0.00 0.00 2.66
3005 3681 9.834628 ATTACATATGTTACGGTTTGAAGTTTG 57.165 29.630 14.77 0.00 0.00 2.93
3006 3682 7.499321 ACATATGTTACGGTTTGAAGTTTGA 57.501 32.000 1.41 0.00 0.00 2.69
3007 3683 7.932335 ACATATGTTACGGTTTGAAGTTTGAA 58.068 30.769 1.41 0.00 0.00 2.69
3008 3684 8.407064 ACATATGTTACGGTTTGAAGTTTGAAA 58.593 29.630 1.41 0.00 0.00 2.69
3009 3685 8.687301 CATATGTTACGGTTTGAAGTTTGAAAC 58.313 33.333 0.00 0.00 34.22 2.78
3010 3686 6.010294 TGTTACGGTTTGAAGTTTGAAACA 57.990 33.333 11.02 0.00 36.24 2.83
3011 3687 6.444633 TGTTACGGTTTGAAGTTTGAAACAA 58.555 32.000 11.02 0.00 36.24 2.83
3012 3688 6.362820 TGTTACGGTTTGAAGTTTGAAACAAC 59.637 34.615 11.02 5.73 36.24 3.32
3013 3689 5.128992 ACGGTTTGAAGTTTGAAACAACT 57.871 34.783 11.02 0.00 36.24 3.16
3014 3690 4.920927 ACGGTTTGAAGTTTGAAACAACTG 59.079 37.500 11.02 12.32 36.24 3.16
3015 3691 5.157781 CGGTTTGAAGTTTGAAACAACTGA 58.842 37.500 11.02 0.00 36.24 3.41
3016 3692 5.631512 CGGTTTGAAGTTTGAAACAACTGAA 59.368 36.000 11.02 0.00 36.24 3.02
3017 3693 6.144724 CGGTTTGAAGTTTGAAACAACTGAAA 59.855 34.615 11.02 0.00 36.24 2.69
3018 3694 7.287950 GGTTTGAAGTTTGAAACAACTGAAAC 58.712 34.615 11.02 10.11 36.24 2.78
3019 3695 7.042389 GGTTTGAAGTTTGAAACAACTGAAACA 60.042 33.333 11.02 0.00 36.24 2.83
3020 3696 8.495148 GTTTGAAGTTTGAAACAACTGAAACAT 58.505 29.630 11.02 0.00 34.94 2.71
3021 3697 7.579589 TGAAGTTTGAAACAACTGAAACATG 57.420 32.000 11.02 0.00 31.92 3.21
3022 3698 7.151308 TGAAGTTTGAAACAACTGAAACATGT 58.849 30.769 11.02 0.00 31.92 3.21
3023 3699 7.328249 TGAAGTTTGAAACAACTGAAACATGTC 59.672 33.333 11.02 0.00 31.92 3.06
3024 3700 6.099341 AGTTTGAAACAACTGAAACATGTCC 58.901 36.000 11.02 0.00 31.92 4.02
3025 3701 5.651387 TTGAAACAACTGAAACATGTCCA 57.349 34.783 0.00 0.00 0.00 4.02
3026 3702 4.992688 TGAAACAACTGAAACATGTCCAC 58.007 39.130 0.00 0.00 0.00 4.02
3027 3703 4.460731 TGAAACAACTGAAACATGTCCACA 59.539 37.500 0.00 0.00 0.00 4.17
3028 3704 5.126869 TGAAACAACTGAAACATGTCCACAT 59.873 36.000 0.00 0.00 36.96 3.21
3029 3705 6.319911 TGAAACAACTGAAACATGTCCACATA 59.680 34.615 0.00 0.00 34.26 2.29
3030 3706 6.707440 AACAACTGAAACATGTCCACATAA 57.293 33.333 0.00 0.00 34.26 1.90
3031 3707 6.899393 ACAACTGAAACATGTCCACATAAT 57.101 33.333 0.00 0.00 34.26 1.28
3032 3708 6.913170 ACAACTGAAACATGTCCACATAATC 58.087 36.000 0.00 0.00 34.26 1.75
3033 3709 6.071952 ACAACTGAAACATGTCCACATAATCC 60.072 38.462 0.00 0.00 34.26 3.01
3034 3710 5.819991 ACTGAAACATGTCCACATAATCCT 58.180 37.500 0.00 0.00 34.26 3.24
3035 3711 6.957631 ACTGAAACATGTCCACATAATCCTA 58.042 36.000 0.00 0.00 34.26 2.94
3036 3712 7.577303 ACTGAAACATGTCCACATAATCCTAT 58.423 34.615 0.00 0.00 34.26 2.57
3037 3713 8.713971 ACTGAAACATGTCCACATAATCCTATA 58.286 33.333 0.00 0.00 34.26 1.31
3038 3714 9.212641 CTGAAACATGTCCACATAATCCTATAG 57.787 37.037 0.00 0.00 34.26 1.31
3039 3715 8.156820 TGAAACATGTCCACATAATCCTATAGG 58.843 37.037 13.07 13.07 34.26 2.57
3040 3716 6.627087 ACATGTCCACATAATCCTATAGGG 57.373 41.667 18.97 4.73 34.26 3.53
3041 3717 6.331032 ACATGTCCACATAATCCTATAGGGA 58.669 40.000 18.97 6.19 40.83 4.20
3042 3718 6.213600 ACATGTCCACATAATCCTATAGGGAC 59.786 42.308 18.97 14.57 39.97 4.46
3043 3719 6.213397 CATGTCCACATAATCCTATAGGGACA 59.787 42.308 18.97 19.11 45.08 4.02
3044 3720 6.441924 ATGTCCACATAATCCTATAGGGACAG 59.558 42.308 18.97 8.04 44.67 3.51
3045 3721 8.946523 ATGTCCACATAATCCTATAGGGACAGC 61.947 44.444 18.97 0.87 44.67 4.40
3050 3726 2.606751 TCCTATAGGGACAGCTAGGC 57.393 55.000 18.97 0.00 39.58 3.93
3051 3727 1.787058 TCCTATAGGGACAGCTAGGCA 59.213 52.381 18.97 0.00 39.58 4.75
3052 3728 2.383683 TCCTATAGGGACAGCTAGGCAT 59.616 50.000 18.97 0.00 39.58 4.40
3053 3729 3.596500 TCCTATAGGGACAGCTAGGCATA 59.403 47.826 18.97 0.00 39.58 3.14
3054 3730 3.957497 CCTATAGGGACAGCTAGGCATAG 59.043 52.174 11.33 0.00 37.23 2.23
3055 3731 3.835478 ATAGGGACAGCTAGGCATAGA 57.165 47.619 10.11 0.00 0.00 1.98
3056 3732 2.711895 AGGGACAGCTAGGCATAGAT 57.288 50.000 10.11 0.00 0.00 1.98
3057 3733 2.983296 AGGGACAGCTAGGCATAGATT 58.017 47.619 10.11 0.00 0.00 2.40
3058 3734 4.133526 AGGGACAGCTAGGCATAGATTA 57.866 45.455 10.11 0.00 0.00 1.75
3059 3735 4.493618 AGGGACAGCTAGGCATAGATTAA 58.506 43.478 10.11 0.00 0.00 1.40
3060 3736 4.907875 AGGGACAGCTAGGCATAGATTAAA 59.092 41.667 10.11 0.00 0.00 1.52
3061 3737 5.549619 AGGGACAGCTAGGCATAGATTAAAT 59.450 40.000 10.11 0.00 0.00 1.40
3062 3738 6.044871 AGGGACAGCTAGGCATAGATTAAATT 59.955 38.462 10.11 0.00 0.00 1.82
3063 3739 6.717084 GGGACAGCTAGGCATAGATTAAATTT 59.283 38.462 10.11 0.00 0.00 1.82
3064 3740 7.883311 GGGACAGCTAGGCATAGATTAAATTTA 59.117 37.037 10.11 0.00 0.00 1.40
3065 3741 8.722394 GGACAGCTAGGCATAGATTAAATTTAC 58.278 37.037 10.11 0.00 0.00 2.01
3066 3742 9.495572 GACAGCTAGGCATAGATTAAATTTACT 57.504 33.333 10.11 0.00 0.00 2.24
3067 3743 9.277783 ACAGCTAGGCATAGATTAAATTTACTG 57.722 33.333 10.11 5.31 0.00 2.74
3068 3744 9.277783 CAGCTAGGCATAGATTAAATTTACTGT 57.722 33.333 10.11 0.00 0.00 3.55
3097 3773 8.715191 TCCAAATGTTGTTTATTATTGGATGC 57.285 30.769 0.00 0.00 39.75 3.91
3098 3774 7.768120 TCCAAATGTTGTTTATTATTGGATGCC 59.232 33.333 0.00 0.00 39.75 4.40
3099 3775 7.551974 CCAAATGTTGTTTATTATTGGATGCCA 59.448 33.333 0.00 0.00 38.44 4.92
3100 3776 9.111613 CAAATGTTGTTTATTATTGGATGCCAT 57.888 29.630 0.00 0.00 31.53 4.40
3101 3777 8.665643 AATGTTGTTTATTATTGGATGCCATG 57.334 30.769 0.00 0.00 31.53 3.66
3102 3778 6.047870 TGTTGTTTATTATTGGATGCCATGC 58.952 36.000 0.00 0.00 31.53 4.06
3103 3779 5.212532 TGTTTATTATTGGATGCCATGCC 57.787 39.130 0.00 0.00 31.53 4.40
3104 3780 4.652881 TGTTTATTATTGGATGCCATGCCA 59.347 37.500 0.00 0.00 31.53 4.92
3105 3781 5.307456 TGTTTATTATTGGATGCCATGCCAT 59.693 36.000 0.00 0.00 33.46 4.40
3106 3782 6.496218 TGTTTATTATTGGATGCCATGCCATA 59.504 34.615 0.00 0.00 33.46 2.74
3107 3783 6.528537 TTATTATTGGATGCCATGCCATAC 57.471 37.500 0.00 0.00 33.46 2.39
3108 3784 2.688902 ATTGGATGCCATGCCATACT 57.311 45.000 0.00 0.00 33.46 2.12
3109 3785 2.457813 TTGGATGCCATGCCATACTT 57.542 45.000 0.00 0.00 33.46 2.24
3110 3786 2.457813 TGGATGCCATGCCATACTTT 57.542 45.000 0.00 0.00 0.00 2.66
3111 3787 2.749600 TGGATGCCATGCCATACTTTT 58.250 42.857 0.00 0.00 0.00 2.27
3112 3788 2.694628 TGGATGCCATGCCATACTTTTC 59.305 45.455 0.00 0.00 0.00 2.29
3113 3789 2.287788 GGATGCCATGCCATACTTTTCG 60.288 50.000 0.00 0.00 0.00 3.46
3114 3790 1.832883 TGCCATGCCATACTTTTCGT 58.167 45.000 0.00 0.00 0.00 3.85
3115 3791 2.166829 TGCCATGCCATACTTTTCGTT 58.833 42.857 0.00 0.00 0.00 3.85
3116 3792 2.094803 TGCCATGCCATACTTTTCGTTG 60.095 45.455 0.00 0.00 0.00 4.10
3117 3793 2.735126 GCCATGCCATACTTTTCGTTGG 60.735 50.000 0.00 0.00 0.00 3.77
3118 3794 2.491693 CCATGCCATACTTTTCGTTGGT 59.508 45.455 0.00 0.00 0.00 3.67
3119 3795 3.500982 CATGCCATACTTTTCGTTGGTG 58.499 45.455 0.00 0.00 0.00 4.17
3120 3796 2.577700 TGCCATACTTTTCGTTGGTGT 58.422 42.857 0.00 0.00 0.00 4.16
3121 3797 2.952978 TGCCATACTTTTCGTTGGTGTT 59.047 40.909 0.00 0.00 0.00 3.32
3122 3798 3.381908 TGCCATACTTTTCGTTGGTGTTT 59.618 39.130 0.00 0.00 0.00 2.83
3123 3799 4.142138 TGCCATACTTTTCGTTGGTGTTTT 60.142 37.500 0.00 0.00 0.00 2.43
3129 3805 6.459670 ACTTTTCGTTGGTGTTTTAGGATT 57.540 33.333 0.00 0.00 0.00 3.01
3136 3812 7.391620 TCGTTGGTGTTTTAGGATTAAGATCT 58.608 34.615 0.00 0.00 32.66 2.75
3212 3891 3.209410 AGGTTCTGCTGAAAGTCACAAG 58.791 45.455 7.68 0.00 35.30 3.16
3215 3894 0.940126 CTGCTGAAAGTCACAAGCGT 59.060 50.000 0.00 0.00 35.30 5.07
3230 3909 4.041723 ACAAGCGTTTCAAGTTTGTATGC 58.958 39.130 0.00 6.10 40.36 3.14
3247 3926 0.970640 TGCTGTGGCAATGCTGAAAT 59.029 45.000 4.82 0.00 46.36 2.17
3265 3944 9.539825 TGCTGAAATTTAAAAAGCTCAAATACA 57.460 25.926 12.91 0.00 34.92 2.29
3274 3953 4.978083 AAGCTCAAATACAGCCTGATTG 57.022 40.909 0.00 1.05 37.63 2.67
3278 3957 4.272489 CTCAAATACAGCCTGATTGGGAA 58.728 43.478 0.00 0.00 36.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.249868 TCAGCCAGAACACACTTCCG 60.250 55.000 0.00 0.00 0.00 4.30
2 3 1.202698 ACCTCAGCCAGAACACACTTC 60.203 52.381 0.00 0.00 0.00 3.01
3 4 0.839946 ACCTCAGCCAGAACACACTT 59.160 50.000 0.00 0.00 0.00 3.16
4 5 0.839946 AACCTCAGCCAGAACACACT 59.160 50.000 0.00 0.00 0.00 3.55
5 6 0.947244 CAACCTCAGCCAGAACACAC 59.053 55.000 0.00 0.00 0.00 3.82
6 7 0.546122 ACAACCTCAGCCAGAACACA 59.454 50.000 0.00 0.00 0.00 3.72
7 8 1.680338 AACAACCTCAGCCAGAACAC 58.320 50.000 0.00 0.00 0.00 3.32
8 9 2.810400 GCTAACAACCTCAGCCAGAACA 60.810 50.000 0.00 0.00 0.00 3.18
9 10 1.807142 GCTAACAACCTCAGCCAGAAC 59.193 52.381 0.00 0.00 0.00 3.01
10 11 1.699634 AGCTAACAACCTCAGCCAGAA 59.300 47.619 0.00 0.00 35.88 3.02
11 12 1.352083 AGCTAACAACCTCAGCCAGA 58.648 50.000 0.00 0.00 35.88 3.86
12 13 1.808945 CAAGCTAACAACCTCAGCCAG 59.191 52.381 0.00 0.00 35.88 4.85
13 14 1.419762 TCAAGCTAACAACCTCAGCCA 59.580 47.619 0.00 0.00 35.88 4.75
14 15 2.185004 TCAAGCTAACAACCTCAGCC 57.815 50.000 0.00 0.00 35.88 4.85
15 16 4.275936 TCTTTTCAAGCTAACAACCTCAGC 59.724 41.667 0.00 0.00 35.49 4.26
16 17 6.205464 TCATCTTTTCAAGCTAACAACCTCAG 59.795 38.462 0.00 0.00 0.00 3.35
17 18 6.061441 TCATCTTTTCAAGCTAACAACCTCA 58.939 36.000 0.00 0.00 0.00 3.86
18 19 6.560253 TCATCTTTTCAAGCTAACAACCTC 57.440 37.500 0.00 0.00 0.00 3.85
19 20 6.959639 TTCATCTTTTCAAGCTAACAACCT 57.040 33.333 0.00 0.00 0.00 3.50
20 21 6.642540 CCTTTCATCTTTTCAAGCTAACAACC 59.357 38.462 0.00 0.00 0.00 3.77
21 22 7.203218 ACCTTTCATCTTTTCAAGCTAACAAC 58.797 34.615 0.00 0.00 0.00 3.32
22 23 7.346751 ACCTTTCATCTTTTCAAGCTAACAA 57.653 32.000 0.00 0.00 0.00 2.83
23 24 6.959639 ACCTTTCATCTTTTCAAGCTAACA 57.040 33.333 0.00 0.00 0.00 2.41
24 25 6.144563 GCAACCTTTCATCTTTTCAAGCTAAC 59.855 38.462 0.00 0.00 0.00 2.34
25 26 6.183360 TGCAACCTTTCATCTTTTCAAGCTAA 60.183 34.615 0.00 0.00 0.00 3.09
26 27 5.301551 TGCAACCTTTCATCTTTTCAAGCTA 59.698 36.000 0.00 0.00 0.00 3.32
27 28 4.099881 TGCAACCTTTCATCTTTTCAAGCT 59.900 37.500 0.00 0.00 0.00 3.74
28 29 4.370917 TGCAACCTTTCATCTTTTCAAGC 58.629 39.130 0.00 0.00 0.00 4.01
29 30 6.702723 TCAATGCAACCTTTCATCTTTTCAAG 59.297 34.615 0.00 0.00 0.00 3.02
30 31 6.580788 TCAATGCAACCTTTCATCTTTTCAA 58.419 32.000 0.00 0.00 0.00 2.69
31 32 6.159299 TCAATGCAACCTTTCATCTTTTCA 57.841 33.333 0.00 0.00 0.00 2.69
32 33 7.662604 ATTCAATGCAACCTTTCATCTTTTC 57.337 32.000 0.00 0.00 0.00 2.29
33 34 8.454570 AAATTCAATGCAACCTTTCATCTTTT 57.545 26.923 0.00 0.00 0.00 2.27
34 35 8.454570 AAAATTCAATGCAACCTTTCATCTTT 57.545 26.923 0.00 0.00 0.00 2.52
35 36 8.454570 AAAAATTCAATGCAACCTTTCATCTT 57.545 26.923 0.00 0.00 0.00 2.40
155 161 7.182761 CGGTATTTGAGTGACTTTGATGAATC 58.817 38.462 0.00 0.00 0.00 2.52
195 202 0.106066 TGAATAATGGGCTGGGCTGG 60.106 55.000 0.00 0.00 0.00 4.85
216 223 3.114616 CAGTGGTCAAGCTCGGCG 61.115 66.667 0.00 0.00 0.00 6.46
218 225 1.669115 CACCAGTGGTCAAGCTCGG 60.669 63.158 13.31 0.00 31.02 4.63
219 226 0.249868 TTCACCAGTGGTCAAGCTCG 60.250 55.000 13.31 0.00 31.02 5.03
220 227 1.604278 GTTTCACCAGTGGTCAAGCTC 59.396 52.381 13.31 0.00 31.02 4.09
221 228 1.064758 TGTTTCACCAGTGGTCAAGCT 60.065 47.619 13.31 0.00 31.02 3.74
222 229 1.334869 CTGTTTCACCAGTGGTCAAGC 59.665 52.381 13.31 9.15 31.02 4.01
223 230 1.334869 GCTGTTTCACCAGTGGTCAAG 59.665 52.381 13.31 1.07 31.02 3.02
224 231 1.388547 GCTGTTTCACCAGTGGTCAA 58.611 50.000 13.31 1.95 31.02 3.18
225 232 0.465460 GGCTGTTTCACCAGTGGTCA 60.465 55.000 13.31 6.54 31.02 4.02
226 233 0.179018 AGGCTGTTTCACCAGTGGTC 60.179 55.000 13.31 1.16 31.02 4.02
227 234 0.179018 GAGGCTGTTTCACCAGTGGT 60.179 55.000 9.70 9.70 35.62 4.16
228 235 0.890996 GGAGGCTGTTTCACCAGTGG 60.891 60.000 7.91 7.91 34.84 4.00
229 236 0.109342 AGGAGGCTGTTTCACCAGTG 59.891 55.000 0.00 0.00 34.84 3.66
230 237 0.846693 AAGGAGGCTGTTTCACCAGT 59.153 50.000 0.00 0.00 34.84 4.00
231 238 1.528129 GAAGGAGGCTGTTTCACCAG 58.472 55.000 0.00 0.00 35.49 4.00
232 239 0.110486 GGAAGGAGGCTGTTTCACCA 59.890 55.000 0.00 0.00 0.00 4.17
233 240 0.402121 AGGAAGGAGGCTGTTTCACC 59.598 55.000 0.00 0.00 0.00 4.02
234 241 1.611936 GGAGGAAGGAGGCTGTTTCAC 60.612 57.143 0.00 0.00 0.00 3.18
235 242 0.693049 GGAGGAAGGAGGCTGTTTCA 59.307 55.000 0.00 0.00 0.00 2.69
236 243 0.034960 GGGAGGAAGGAGGCTGTTTC 60.035 60.000 0.00 0.00 0.00 2.78
237 244 0.772124 TGGGAGGAAGGAGGCTGTTT 60.772 55.000 0.00 0.00 0.00 2.83
248 255 1.423794 AAGCGAGGGTTTGGGAGGAA 61.424 55.000 0.00 0.00 0.00 3.36
249 256 1.838073 GAAGCGAGGGTTTGGGAGGA 61.838 60.000 0.00 0.00 0.00 3.71
250 257 1.377333 GAAGCGAGGGTTTGGGAGG 60.377 63.158 0.00 0.00 0.00 4.30
289 311 2.254350 GACGGCGGCAAGGTTTTC 59.746 61.111 8.47 0.00 0.00 2.29
337 364 3.702048 CGGTGGGAGCGGGAGAAA 61.702 66.667 0.00 0.00 35.16 2.52
377 404 1.748493 GAGCTCTCGGATGAGACAGTT 59.252 52.381 6.43 0.00 46.25 3.16
378 405 1.340502 TGAGCTCTCGGATGAGACAGT 60.341 52.381 16.19 0.00 46.25 3.55
384 411 2.484928 CCGCTGAGCTCTCGGATGA 61.485 63.158 30.90 5.00 45.53 2.92
450 496 1.517257 CTGCAAGACCTAGACGCCG 60.517 63.158 0.00 0.00 34.07 6.46
485 531 3.679824 ACCTGAACTAGTAACTGGTGC 57.320 47.619 21.61 0.00 35.25 5.01
492 538 1.745087 CGGCCGTACCTGAACTAGTAA 59.255 52.381 19.50 0.00 35.61 2.24
616 668 4.509970 CGTATGAGAGTAGTCTGACAGAGG 59.490 50.000 5.10 0.00 30.97 3.69
627 679 5.950758 ACTAAGGATGCGTATGAGAGTAG 57.049 43.478 0.00 0.00 0.00 2.57
633 685 5.529581 TGATGAACTAAGGATGCGTATGA 57.470 39.130 0.00 0.00 0.00 2.15
637 689 3.313526 GCATTGATGAACTAAGGATGCGT 59.686 43.478 0.00 0.00 30.62 5.24
638 690 3.562973 AGCATTGATGAACTAAGGATGCG 59.437 43.478 0.00 0.00 42.22 4.73
676 728 4.197750 AGTGAGCTGATTTGCCAGATTAG 58.802 43.478 0.00 0.00 36.29 1.73
681 733 4.978083 AAATAGTGAGCTGATTTGCCAG 57.022 40.909 0.00 0.00 37.23 4.85
697 749 6.395629 TCTCTTGTTTCGGGACAGTAAATAG 58.604 40.000 0.00 0.00 0.00 1.73
722 774 2.536761 AATCGAGTTGTTTCCGGACA 57.463 45.000 1.83 0.00 0.00 4.02
723 775 5.541098 AATTAATCGAGTTGTTTCCGGAC 57.459 39.130 1.83 0.00 0.00 4.79
725 777 5.499047 GCTAATTAATCGAGTTGTTTCCGG 58.501 41.667 0.00 0.00 0.00 5.14
726 778 5.293569 AGGCTAATTAATCGAGTTGTTTCCG 59.706 40.000 0.00 0.00 0.00 4.30
727 779 6.093633 ACAGGCTAATTAATCGAGTTGTTTCC 59.906 38.462 0.00 0.00 0.00 3.13
728 780 7.073342 ACAGGCTAATTAATCGAGTTGTTTC 57.927 36.000 0.00 0.00 0.00 2.78
729 781 7.822822 ACTACAGGCTAATTAATCGAGTTGTTT 59.177 33.333 0.00 0.00 0.00 2.83
733 804 6.757010 CACACTACAGGCTAATTAATCGAGTT 59.243 38.462 0.00 0.00 0.00 3.01
871 956 5.300752 AGACCACAAGACATACTGACAAAG 58.699 41.667 0.00 0.00 0.00 2.77
883 968 2.614057 CTGTTCCACAAGACCACAAGAC 59.386 50.000 0.00 0.00 0.00 3.01
916 1001 1.053424 AGAAACCAAGACCACCGCTA 58.947 50.000 0.00 0.00 0.00 4.26
935 1033 2.348620 CTGCTGGCACTACAGGCA 59.651 61.111 0.00 0.00 42.25 4.75
945 1043 1.663702 CTTGCTGTTTGCTGCTGGC 60.664 57.895 0.00 0.00 43.37 4.85
1023 1597 2.097038 CGGAGCTTCGCCACTTCTG 61.097 63.158 0.00 0.00 0.00 3.02
1116 1690 7.442364 GCATTTACCTGATAAATCTCAGTGCTA 59.558 37.037 6.44 0.00 40.82 3.49
1267 1913 5.711506 AGTGCTACACATTCCATCATTTCAA 59.288 36.000 0.00 0.00 36.74 2.69
1299 1945 9.701098 AAACAGAATATACTACACGACAAGAAA 57.299 29.630 0.00 0.00 0.00 2.52
1307 1953 5.070047 AGGGGGAAACAGAATATACTACACG 59.930 44.000 0.00 0.00 0.00 4.49
1310 1958 7.376335 AGAAGGGGGAAACAGAATATACTAC 57.624 40.000 0.00 0.00 0.00 2.73
1346 1997 3.202151 TGGGTCCCCATGAGAATAAGTTC 59.798 47.826 5.13 0.00 41.89 3.01
1647 2303 2.681778 CCAGGAGCTCGGGTGTCT 60.682 66.667 7.83 0.00 0.00 3.41
2059 2723 5.011586 CCCTTTCCTTTAACACGGGATTTA 58.988 41.667 0.00 0.00 31.85 1.40
2111 2775 1.737838 TCATCATCAGAACAACGGGC 58.262 50.000 0.00 0.00 0.00 6.13
2113 2777 2.032550 GCCATCATCATCAGAACAACGG 59.967 50.000 0.00 0.00 0.00 4.44
2170 2834 0.799393 GCTTTTGAGAGGAAGTCGGC 59.201 55.000 0.00 0.00 0.00 5.54
2224 2888 1.134401 TCGAATCTTGAGGGCACATCC 60.134 52.381 0.00 0.00 0.00 3.51
2320 2984 4.043037 ACGCTAAACCTCTAGCATACAC 57.957 45.455 3.73 0.00 43.84 2.90
2333 2997 1.003223 GTCCACACACCAACGCTAAAC 60.003 52.381 0.00 0.00 0.00 2.01
2354 3018 1.133915 CCACCCAGGCATATTAACGGT 60.134 52.381 0.00 0.00 0.00 4.83
2408 3075 0.252330 TGGGTCATACAGGTTCCCGA 60.252 55.000 0.00 0.00 40.86 5.14
2411 3078 4.704965 GATACTTGGGTCATACAGGTTCC 58.295 47.826 0.00 0.00 30.42 3.62
2424 3091 2.403252 AAACAGCTCCGATACTTGGG 57.597 50.000 0.00 0.00 0.00 4.12
2426 3093 3.125316 GGTCAAAACAGCTCCGATACTTG 59.875 47.826 0.00 0.00 0.00 3.16
2452 3119 3.958704 TCCGCACAACAAAACACATAAG 58.041 40.909 0.00 0.00 0.00 1.73
2476 3143 1.664649 CTCACATGCCACGACACGT 60.665 57.895 0.00 0.00 42.36 4.49
2481 3148 1.540435 TACAGCCTCACATGCCACGA 61.540 55.000 0.00 0.00 0.00 4.35
2755 3431 0.116342 TGGGAACAGAGGGAGTAGCA 59.884 55.000 0.00 0.00 35.01 3.49
2757 3433 5.896073 ATATTTGGGAACAGAGGGAGTAG 57.104 43.478 0.00 0.00 44.54 2.57
2758 3434 6.906901 ACTTATATTTGGGAACAGAGGGAGTA 59.093 38.462 0.00 0.00 44.54 2.59
2761 3437 5.970640 AGACTTATATTTGGGAACAGAGGGA 59.029 40.000 0.00 0.00 44.54 4.20
2762 3438 6.253946 AGACTTATATTTGGGAACAGAGGG 57.746 41.667 0.00 0.00 44.54 4.30
2763 3439 8.581253 AAAAGACTTATATTTGGGAACAGAGG 57.419 34.615 0.00 0.00 44.54 3.69
2780 3456 8.633561 CCCTTGTTGAAATCTCTAAAAAGACTT 58.366 33.333 0.00 0.00 0.00 3.01
2781 3457 7.998964 TCCCTTGTTGAAATCTCTAAAAAGACT 59.001 33.333 0.00 0.00 0.00 3.24
2782 3458 8.076781 GTCCCTTGTTGAAATCTCTAAAAAGAC 58.923 37.037 0.00 0.00 0.00 3.01
2783 3459 7.998964 AGTCCCTTGTTGAAATCTCTAAAAAGA 59.001 33.333 0.00 0.00 0.00 2.52
2784 3460 8.171164 AGTCCCTTGTTGAAATCTCTAAAAAG 57.829 34.615 0.00 0.00 0.00 2.27
2785 3461 9.063615 GTAGTCCCTTGTTGAAATCTCTAAAAA 57.936 33.333 0.00 0.00 0.00 1.94
2786 3462 8.215050 TGTAGTCCCTTGTTGAAATCTCTAAAA 58.785 33.333 0.00 0.00 0.00 1.52
2787 3463 7.741785 TGTAGTCCCTTGTTGAAATCTCTAAA 58.258 34.615 0.00 0.00 0.00 1.85
2788 3464 7.311092 TGTAGTCCCTTGTTGAAATCTCTAA 57.689 36.000 0.00 0.00 0.00 2.10
2789 3465 6.928348 TGTAGTCCCTTGTTGAAATCTCTA 57.072 37.500 0.00 0.00 0.00 2.43
2790 3466 5.825593 TGTAGTCCCTTGTTGAAATCTCT 57.174 39.130 0.00 0.00 0.00 3.10
2791 3467 6.255887 CGTATGTAGTCCCTTGTTGAAATCTC 59.744 42.308 0.00 0.00 0.00 2.75
2792 3468 6.070995 TCGTATGTAGTCCCTTGTTGAAATCT 60.071 38.462 0.00 0.00 0.00 2.40
2793 3469 6.103997 TCGTATGTAGTCCCTTGTTGAAATC 58.896 40.000 0.00 0.00 0.00 2.17
2794 3470 6.045072 TCGTATGTAGTCCCTTGTTGAAAT 57.955 37.500 0.00 0.00 0.00 2.17
2795 3471 5.471556 TCGTATGTAGTCCCTTGTTGAAA 57.528 39.130 0.00 0.00 0.00 2.69
2796 3472 5.471556 TTCGTATGTAGTCCCTTGTTGAA 57.528 39.130 0.00 0.00 0.00 2.69
2797 3473 4.619863 GCTTCGTATGTAGTCCCTTGTTGA 60.620 45.833 0.00 0.00 0.00 3.18
2798 3474 3.617263 GCTTCGTATGTAGTCCCTTGTTG 59.383 47.826 0.00 0.00 0.00 3.33
2799 3475 3.259876 TGCTTCGTATGTAGTCCCTTGTT 59.740 43.478 0.00 0.00 0.00 2.83
2800 3476 2.829720 TGCTTCGTATGTAGTCCCTTGT 59.170 45.455 0.00 0.00 0.00 3.16
2801 3477 3.520290 TGCTTCGTATGTAGTCCCTTG 57.480 47.619 0.00 0.00 0.00 3.61
2802 3478 4.546829 TTTGCTTCGTATGTAGTCCCTT 57.453 40.909 0.00 0.00 0.00 3.95
2803 3479 4.251268 GTTTTGCTTCGTATGTAGTCCCT 58.749 43.478 0.00 0.00 0.00 4.20
2804 3480 3.061697 CGTTTTGCTTCGTATGTAGTCCC 59.938 47.826 0.00 0.00 0.00 4.46
2805 3481 3.922240 TCGTTTTGCTTCGTATGTAGTCC 59.078 43.478 0.00 0.00 0.00 3.85
2806 3482 4.620184 ACTCGTTTTGCTTCGTATGTAGTC 59.380 41.667 0.00 0.00 0.00 2.59
2807 3483 4.384846 CACTCGTTTTGCTTCGTATGTAGT 59.615 41.667 0.00 0.00 0.00 2.73
2808 3484 4.619760 TCACTCGTTTTGCTTCGTATGTAG 59.380 41.667 0.00 0.00 0.00 2.74
2809 3485 4.548494 TCACTCGTTTTGCTTCGTATGTA 58.452 39.130 0.00 0.00 0.00 2.29
2810 3486 3.386486 TCACTCGTTTTGCTTCGTATGT 58.614 40.909 0.00 0.00 0.00 2.29
2811 3487 4.383774 TTCACTCGTTTTGCTTCGTATG 57.616 40.909 0.00 0.00 0.00 2.39
2812 3488 4.929808 AGATTCACTCGTTTTGCTTCGTAT 59.070 37.500 0.00 0.00 0.00 3.06
2813 3489 4.304110 AGATTCACTCGTTTTGCTTCGTA 58.696 39.130 0.00 0.00 0.00 3.43
2814 3490 3.131396 AGATTCACTCGTTTTGCTTCGT 58.869 40.909 0.00 0.00 0.00 3.85
2815 3491 3.795561 AGATTCACTCGTTTTGCTTCG 57.204 42.857 0.00 0.00 0.00 3.79
2816 3492 5.177696 AGTGTAGATTCACTCGTTTTGCTTC 59.822 40.000 0.00 0.00 44.07 3.86
2817 3493 5.057149 AGTGTAGATTCACTCGTTTTGCTT 58.943 37.500 0.00 0.00 44.07 3.91
2818 3494 4.632153 AGTGTAGATTCACTCGTTTTGCT 58.368 39.130 0.00 0.00 44.07 3.91
2819 3495 4.992381 AGTGTAGATTCACTCGTTTTGC 57.008 40.909 0.00 0.00 44.07 3.68
2849 3525 9.511272 ACTACAACATACGGACATATATAGACA 57.489 33.333 0.00 0.00 0.00 3.41
2850 3526 9.985318 GACTACAACATACGGACATATATAGAC 57.015 37.037 0.00 0.00 0.00 2.59
2851 3527 9.170734 GGACTACAACATACGGACATATATAGA 57.829 37.037 0.00 0.00 0.00 1.98
2852 3528 8.953313 TGGACTACAACATACGGACATATATAG 58.047 37.037 0.00 0.00 0.00 1.31
2853 3529 8.866970 TGGACTACAACATACGGACATATATA 57.133 34.615 0.00 0.00 0.00 0.86
2854 3530 7.770366 TGGACTACAACATACGGACATATAT 57.230 36.000 0.00 0.00 0.00 0.86
2855 3531 7.770366 ATGGACTACAACATACGGACATATA 57.230 36.000 0.00 0.00 0.00 0.86
2856 3532 6.665992 ATGGACTACAACATACGGACATAT 57.334 37.500 0.00 0.00 0.00 1.78
2857 3533 6.474140 AATGGACTACAACATACGGACATA 57.526 37.500 0.00 0.00 0.00 2.29
2858 3534 5.353394 AATGGACTACAACATACGGACAT 57.647 39.130 0.00 0.00 0.00 3.06
2859 3535 4.811969 AATGGACTACAACATACGGACA 57.188 40.909 0.00 0.00 0.00 4.02
2860 3536 5.172934 TCAAATGGACTACAACATACGGAC 58.827 41.667 0.00 0.00 0.00 4.79
2861 3537 5.408880 TCAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
2862 3538 6.311723 GTTTCAAATGGACTACAACATACGG 58.688 40.000 0.00 0.00 0.00 4.02
2863 3539 6.148811 AGGTTTCAAATGGACTACAACATACG 59.851 38.462 0.00 0.00 0.00 3.06
2864 3540 7.390718 AGAGGTTTCAAATGGACTACAACATAC 59.609 37.037 0.00 0.00 0.00 2.39
2865 3541 7.458397 AGAGGTTTCAAATGGACTACAACATA 58.542 34.615 0.00 0.00 0.00 2.29
2866 3542 6.306987 AGAGGTTTCAAATGGACTACAACAT 58.693 36.000 0.00 0.00 0.00 2.71
2867 3543 5.690865 AGAGGTTTCAAATGGACTACAACA 58.309 37.500 0.00 0.00 0.00 3.33
2868 3544 7.739498 TTAGAGGTTTCAAATGGACTACAAC 57.261 36.000 0.00 0.00 0.00 3.32
2869 3545 8.754991 TTTTAGAGGTTTCAAATGGACTACAA 57.245 30.769 0.00 0.00 0.00 2.41
2870 3546 8.754991 TTTTTAGAGGTTTCAAATGGACTACA 57.245 30.769 0.00 0.00 0.00 2.74
2871 3547 9.063615 TCTTTTTAGAGGTTTCAAATGGACTAC 57.936 33.333 0.00 0.00 0.00 2.73
2872 3548 9.063615 GTCTTTTTAGAGGTTTCAAATGGACTA 57.936 33.333 0.00 0.00 0.00 2.59
2873 3549 7.780271 AGTCTTTTTAGAGGTTTCAAATGGACT 59.220 33.333 0.00 0.00 0.00 3.85
2874 3550 7.941919 AGTCTTTTTAGAGGTTTCAAATGGAC 58.058 34.615 0.00 0.00 0.00 4.02
2875 3551 8.533569 AAGTCTTTTTAGAGGTTTCAAATGGA 57.466 30.769 0.00 0.00 0.00 3.41
2891 3567 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2892 3568 8.765517 TCCTCCGTTCCTAAATATAAGTCTTTT 58.234 33.333 0.00 0.00 0.00 2.27
2893 3569 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
2894 3570 7.564292 ACTCCTCCGTTCCTAAATATAAGTCTT 59.436 37.037 0.00 0.00 0.00 3.01
2895 3571 7.068061 ACTCCTCCGTTCCTAAATATAAGTCT 58.932 38.462 0.00 0.00 0.00 3.24
2896 3572 7.287512 ACTCCTCCGTTCCTAAATATAAGTC 57.712 40.000 0.00 0.00 0.00 3.01
2897 3573 8.003629 AGTACTCCTCCGTTCCTAAATATAAGT 58.996 37.037 0.00 0.00 0.00 2.24
2898 3574 8.406730 AGTACTCCTCCGTTCCTAAATATAAG 57.593 38.462 0.00 0.00 0.00 1.73
2902 3578 9.458727 CATATAGTACTCCTCCGTTCCTAAATA 57.541 37.037 0.00 0.00 0.00 1.40
2903 3579 8.168725 TCATATAGTACTCCTCCGTTCCTAAAT 58.831 37.037 0.00 0.00 0.00 1.40
2904 3580 7.520798 TCATATAGTACTCCTCCGTTCCTAAA 58.479 38.462 0.00 0.00 0.00 1.85
2905 3581 7.083062 TCATATAGTACTCCTCCGTTCCTAA 57.917 40.000 0.00 0.00 0.00 2.69
2906 3582 6.692849 TCATATAGTACTCCTCCGTTCCTA 57.307 41.667 0.00 0.00 0.00 2.94
2907 3583 5.579753 TCATATAGTACTCCTCCGTTCCT 57.420 43.478 0.00 0.00 0.00 3.36
2908 3584 5.125739 CCATCATATAGTACTCCTCCGTTCC 59.874 48.000 0.00 0.00 0.00 3.62
2909 3585 5.393243 GCCATCATATAGTACTCCTCCGTTC 60.393 48.000 0.00 0.00 0.00 3.95
2910 3586 4.463186 GCCATCATATAGTACTCCTCCGTT 59.537 45.833 0.00 0.00 0.00 4.44
2911 3587 4.017808 GCCATCATATAGTACTCCTCCGT 58.982 47.826 0.00 0.00 0.00 4.69
2912 3588 4.017126 TGCCATCATATAGTACTCCTCCG 58.983 47.826 0.00 0.00 0.00 4.63
2913 3589 6.360370 TTTGCCATCATATAGTACTCCTCC 57.640 41.667 0.00 0.00 0.00 4.30
2914 3590 8.725148 CAATTTTGCCATCATATAGTACTCCTC 58.275 37.037 0.00 0.00 0.00 3.71
2915 3591 8.627208 CAATTTTGCCATCATATAGTACTCCT 57.373 34.615 0.00 0.00 0.00 3.69
2941 3617 2.226437 GTGCAGACATGGTAACCTGTTG 59.774 50.000 0.00 0.00 46.10 3.33
2959 3635 7.422399 TGTAATGACCAACTTCTTAAAAGTGC 58.578 34.615 4.50 0.00 0.00 4.40
2967 3643 8.879759 CGTAACATATGTAATGACCAACTTCTT 58.120 33.333 9.21 0.00 0.00 2.52
2968 3644 7.494625 CCGTAACATATGTAATGACCAACTTCT 59.505 37.037 9.21 0.00 0.00 2.85
2969 3645 7.279313 ACCGTAACATATGTAATGACCAACTTC 59.721 37.037 9.21 0.00 0.00 3.01
2970 3646 7.107542 ACCGTAACATATGTAATGACCAACTT 58.892 34.615 9.21 0.00 0.00 2.66
2971 3647 6.646267 ACCGTAACATATGTAATGACCAACT 58.354 36.000 9.21 0.00 0.00 3.16
2972 3648 6.913873 ACCGTAACATATGTAATGACCAAC 57.086 37.500 9.21 0.00 0.00 3.77
2973 3649 7.606839 TCAAACCGTAACATATGTAATGACCAA 59.393 33.333 9.21 0.00 0.00 3.67
2974 3650 7.104290 TCAAACCGTAACATATGTAATGACCA 58.896 34.615 9.21 0.00 0.00 4.02
2975 3651 7.542534 TCAAACCGTAACATATGTAATGACC 57.457 36.000 9.21 0.00 0.00 4.02
2976 3652 8.662141 ACTTCAAACCGTAACATATGTAATGAC 58.338 33.333 9.21 4.62 0.00 3.06
2977 3653 8.780846 ACTTCAAACCGTAACATATGTAATGA 57.219 30.769 9.21 3.83 0.00 2.57
2978 3654 9.834628 AAACTTCAAACCGTAACATATGTAATG 57.165 29.630 9.21 1.58 0.00 1.90
2979 3655 9.834628 CAAACTTCAAACCGTAACATATGTAAT 57.165 29.630 9.21 0.00 0.00 1.89
2980 3656 9.053840 TCAAACTTCAAACCGTAACATATGTAA 57.946 29.630 9.21 0.00 0.00 2.41
2981 3657 8.604640 TCAAACTTCAAACCGTAACATATGTA 57.395 30.769 9.21 0.00 0.00 2.29
2982 3658 7.499321 TCAAACTTCAAACCGTAACATATGT 57.501 32.000 1.41 1.41 0.00 2.29
2983 3659 8.687301 GTTTCAAACTTCAAACCGTAACATATG 58.313 33.333 0.00 0.00 0.00 1.78
2984 3660 8.407064 TGTTTCAAACTTCAAACCGTAACATAT 58.593 29.630 1.10 0.00 32.43 1.78
2985 3661 7.759465 TGTTTCAAACTTCAAACCGTAACATA 58.241 30.769 1.10 0.00 32.43 2.29
2986 3662 6.622549 TGTTTCAAACTTCAAACCGTAACAT 58.377 32.000 1.10 0.00 32.43 2.71
2987 3663 6.010294 TGTTTCAAACTTCAAACCGTAACA 57.990 33.333 1.10 0.00 32.43 2.41
2988 3664 6.583427 AGTTGTTTCAAACTTCAAACCGTAAC 59.417 34.615 1.10 0.00 37.05 2.50
2989 3665 6.583050 CAGTTGTTTCAAACTTCAAACCGTAA 59.417 34.615 1.10 0.00 38.34 3.18
2990 3666 6.072618 TCAGTTGTTTCAAACTTCAAACCGTA 60.073 34.615 1.10 0.00 38.34 4.02
2991 3667 4.920927 CAGTTGTTTCAAACTTCAAACCGT 59.079 37.500 1.10 0.00 38.34 4.83
2992 3668 5.157781 TCAGTTGTTTCAAACTTCAAACCG 58.842 37.500 1.10 0.00 38.34 4.44
2993 3669 7.042389 TGTTTCAGTTGTTTCAAACTTCAAACC 60.042 33.333 1.10 0.00 38.35 3.27
2994 3670 7.846485 TGTTTCAGTTGTTTCAAACTTCAAAC 58.154 30.769 1.10 11.24 38.34 2.93
2995 3671 8.494347 CATGTTTCAGTTGTTTCAAACTTCAAA 58.506 29.630 1.10 0.00 38.34 2.69
2996 3672 7.655328 ACATGTTTCAGTTGTTTCAAACTTCAA 59.345 29.630 1.10 0.00 38.34 2.69
2997 3673 7.151308 ACATGTTTCAGTTGTTTCAAACTTCA 58.849 30.769 1.10 0.00 38.34 3.02
2998 3674 7.201435 GGACATGTTTCAGTTGTTTCAAACTTC 60.201 37.037 0.00 0.00 38.34 3.01
2999 3675 6.589907 GGACATGTTTCAGTTGTTTCAAACTT 59.410 34.615 0.00 0.00 38.34 2.66
3000 3676 6.099341 GGACATGTTTCAGTTGTTTCAAACT 58.901 36.000 0.00 0.00 41.08 2.66
3001 3677 5.866633 TGGACATGTTTCAGTTGTTTCAAAC 59.133 36.000 0.00 0.00 0.00 2.93
3002 3678 5.866633 GTGGACATGTTTCAGTTGTTTCAAA 59.133 36.000 0.00 0.00 0.00 2.69
3003 3679 5.047731 TGTGGACATGTTTCAGTTGTTTCAA 60.048 36.000 0.00 0.00 0.00 2.69
3004 3680 4.460731 TGTGGACATGTTTCAGTTGTTTCA 59.539 37.500 0.00 0.00 0.00 2.69
3005 3681 4.992688 TGTGGACATGTTTCAGTTGTTTC 58.007 39.130 0.00 0.00 0.00 2.78
3006 3682 5.596836 ATGTGGACATGTTTCAGTTGTTT 57.403 34.783 0.00 0.00 34.83 2.83
3007 3683 6.707440 TTATGTGGACATGTTTCAGTTGTT 57.293 33.333 0.00 0.00 37.15 2.83
3008 3684 6.071952 GGATTATGTGGACATGTTTCAGTTGT 60.072 38.462 0.00 0.00 37.15 3.32
3009 3685 6.151648 AGGATTATGTGGACATGTTTCAGTTG 59.848 38.462 0.00 0.00 37.15 3.16
3010 3686 6.248433 AGGATTATGTGGACATGTTTCAGTT 58.752 36.000 0.00 0.00 37.15 3.16
3011 3687 5.819991 AGGATTATGTGGACATGTTTCAGT 58.180 37.500 0.00 0.00 37.15 3.41
3012 3688 9.212641 CTATAGGATTATGTGGACATGTTTCAG 57.787 37.037 0.00 0.00 37.15 3.02
3013 3689 8.156820 CCTATAGGATTATGTGGACATGTTTCA 58.843 37.037 14.11 0.00 36.11 2.69
3014 3690 7.607991 CCCTATAGGATTATGTGGACATGTTTC 59.392 40.741 21.07 0.00 38.24 2.78
3015 3691 7.294720 TCCCTATAGGATTATGTGGACATGTTT 59.705 37.037 21.07 0.00 40.93 2.83
3016 3692 6.792473 TCCCTATAGGATTATGTGGACATGTT 59.208 38.462 21.07 0.00 40.93 2.71
3017 3693 6.331032 TCCCTATAGGATTATGTGGACATGT 58.669 40.000 21.07 0.00 40.93 3.21
3018 3694 6.874278 TCCCTATAGGATTATGTGGACATG 57.126 41.667 21.07 0.00 40.93 3.21
3031 3707 1.787058 TGCCTAGCTGTCCCTATAGGA 59.213 52.381 21.07 3.60 44.91 2.94
3032 3708 2.310779 TGCCTAGCTGTCCCTATAGG 57.689 55.000 12.27 12.27 38.26 2.57
3033 3709 4.861196 TCTATGCCTAGCTGTCCCTATAG 58.139 47.826 0.00 0.00 0.00 1.31
3034 3710 4.948062 TCTATGCCTAGCTGTCCCTATA 57.052 45.455 0.00 0.00 0.00 1.31
3035 3711 3.835478 TCTATGCCTAGCTGTCCCTAT 57.165 47.619 0.00 0.00 0.00 2.57
3036 3712 3.835478 ATCTATGCCTAGCTGTCCCTA 57.165 47.619 0.00 0.00 0.00 3.53
3037 3713 2.711895 ATCTATGCCTAGCTGTCCCT 57.288 50.000 0.00 0.00 0.00 4.20
3038 3714 4.891992 TTAATCTATGCCTAGCTGTCCC 57.108 45.455 0.00 0.00 0.00 4.46
3039 3715 7.751768 AAATTTAATCTATGCCTAGCTGTCC 57.248 36.000 0.00 0.00 0.00 4.02
3040 3716 9.495572 AGTAAATTTAATCTATGCCTAGCTGTC 57.504 33.333 0.00 0.00 0.00 3.51
3041 3717 9.277783 CAGTAAATTTAATCTATGCCTAGCTGT 57.722 33.333 0.00 0.00 0.00 4.40
3042 3718 9.277783 ACAGTAAATTTAATCTATGCCTAGCTG 57.722 33.333 0.00 1.44 0.00 4.24
3071 3747 9.160496 GCATCCAATAATAAACAACATTTGGAA 57.840 29.630 5.67 0.00 34.12 3.53
3072 3748 7.768120 GGCATCCAATAATAAACAACATTTGGA 59.232 33.333 4.16 4.16 34.12 3.53
3073 3749 7.551974 TGGCATCCAATAATAAACAACATTTGG 59.448 33.333 0.00 0.00 34.12 3.28
3074 3750 8.489990 TGGCATCCAATAATAAACAACATTTG 57.510 30.769 0.00 0.00 0.00 2.32
3075 3751 9.111613 CATGGCATCCAATAATAAACAACATTT 57.888 29.630 0.00 0.00 36.95 2.32
3076 3752 7.227116 GCATGGCATCCAATAATAAACAACATT 59.773 33.333 0.00 0.00 36.95 2.71
3077 3753 6.707161 GCATGGCATCCAATAATAAACAACAT 59.293 34.615 0.00 0.00 36.95 2.71
3078 3754 6.047870 GCATGGCATCCAATAATAAACAACA 58.952 36.000 0.00 0.00 36.95 3.33
3079 3755 5.466393 GGCATGGCATCCAATAATAAACAAC 59.534 40.000 15.47 0.00 36.95 3.32
3080 3756 5.129980 TGGCATGGCATCCAATAATAAACAA 59.870 36.000 19.43 0.00 36.95 2.83
3081 3757 4.652881 TGGCATGGCATCCAATAATAAACA 59.347 37.500 19.43 0.00 36.95 2.83
3082 3758 5.212532 TGGCATGGCATCCAATAATAAAC 57.787 39.130 19.43 0.00 36.95 2.01
3083 3759 6.725369 AGTATGGCATGGCATCCAATAATAAA 59.275 34.615 35.19 13.43 36.95 1.40
3084 3760 6.255287 AGTATGGCATGGCATCCAATAATAA 58.745 36.000 35.19 14.16 36.95 1.40
3085 3761 5.829986 AGTATGGCATGGCATCCAATAATA 58.170 37.500 35.19 14.88 36.95 0.98
3086 3762 4.680407 AGTATGGCATGGCATCCAATAAT 58.320 39.130 35.19 16.20 36.95 1.28
3087 3763 4.116782 AGTATGGCATGGCATCCAATAA 57.883 40.909 35.19 16.36 36.95 1.40
3088 3764 3.812611 AGTATGGCATGGCATCCAATA 57.187 42.857 35.19 17.09 36.95 1.90
3089 3765 2.688902 AGTATGGCATGGCATCCAAT 57.311 45.000 35.19 17.66 36.95 3.16
3090 3766 2.457813 AAGTATGGCATGGCATCCAA 57.542 45.000 35.19 17.84 36.95 3.53
3091 3767 2.457813 AAAGTATGGCATGGCATCCA 57.542 45.000 35.19 18.59 38.19 3.41
3092 3768 2.287788 CGAAAAGTATGGCATGGCATCC 60.288 50.000 35.19 25.63 0.00 3.51
3093 3769 2.358898 ACGAAAAGTATGGCATGGCATC 59.641 45.455 35.19 25.21 0.00 3.91
3094 3770 2.378038 ACGAAAAGTATGGCATGGCAT 58.622 42.857 33.85 33.85 0.00 4.40
3095 3771 1.832883 ACGAAAAGTATGGCATGGCA 58.167 45.000 25.52 25.52 0.00 4.92
3096 3772 2.529151 CAACGAAAAGTATGGCATGGC 58.471 47.619 13.29 13.29 0.00 4.40
3097 3773 2.491693 ACCAACGAAAAGTATGGCATGG 59.508 45.455 10.98 2.28 35.69 3.66
3098 3774 3.057596 ACACCAACGAAAAGTATGGCATG 60.058 43.478 10.98 0.00 35.69 4.06
3099 3775 3.153919 ACACCAACGAAAAGTATGGCAT 58.846 40.909 4.88 4.88 35.69 4.40
3100 3776 2.577700 ACACCAACGAAAAGTATGGCA 58.422 42.857 0.00 0.00 35.69 4.92
3101 3777 3.636282 AACACCAACGAAAAGTATGGC 57.364 42.857 0.00 0.00 35.69 4.40
3102 3778 6.016943 TCCTAAAACACCAACGAAAAGTATGG 60.017 38.462 0.00 0.00 37.18 2.74
3103 3779 6.961576 TCCTAAAACACCAACGAAAAGTATG 58.038 36.000 0.00 0.00 0.00 2.39
3104 3780 7.754851 ATCCTAAAACACCAACGAAAAGTAT 57.245 32.000 0.00 0.00 0.00 2.12
3105 3781 7.571080 AATCCTAAAACACCAACGAAAAGTA 57.429 32.000 0.00 0.00 0.00 2.24
3106 3782 6.459670 AATCCTAAAACACCAACGAAAAGT 57.540 33.333 0.00 0.00 0.00 2.66
3107 3783 8.347035 TCTTAATCCTAAAACACCAACGAAAAG 58.653 33.333 0.00 0.00 0.00 2.27
3108 3784 8.223177 TCTTAATCCTAAAACACCAACGAAAA 57.777 30.769 0.00 0.00 0.00 2.29
3109 3785 7.804843 TCTTAATCCTAAAACACCAACGAAA 57.195 32.000 0.00 0.00 0.00 3.46
3110 3786 7.881232 AGATCTTAATCCTAAAACACCAACGAA 59.119 33.333 0.00 0.00 31.78 3.85
3111 3787 7.391620 AGATCTTAATCCTAAAACACCAACGA 58.608 34.615 0.00 0.00 31.78 3.85
3112 3788 7.611213 AGATCTTAATCCTAAAACACCAACG 57.389 36.000 0.00 0.00 31.78 4.10
3212 3891 3.421888 CACAGCATACAAACTTGAAACGC 59.578 43.478 0.00 0.00 0.00 4.84
3215 3894 3.382865 TGCCACAGCATACAAACTTGAAA 59.617 39.130 0.00 0.00 46.52 2.69
3230 3909 6.542574 TTTTAAATTTCAGCATTGCCACAG 57.457 33.333 4.70 0.00 0.00 3.66
3247 3926 7.283625 TCAGGCTGTATTTGAGCTTTTTAAA 57.716 32.000 15.27 0.00 36.63 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.